Citrus Sinensis ID: 033169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEEEcccccccEEcHHHHHHHHHHHEEEccEEccccccEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHcccccccEEEEEEEEcccccccccccHHHHHHHHHHHEEEcccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHcHHHHHHHHEccccccEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
msrgaaaagvkgkkkgatfvidcgkpvedKIMDIASLEKFLQERIKVggkagalgdsvtvtrektkitvtsdsnfsKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFniaenegeeed
Flexible Loop (DISEMBL)
msrgaaaagvkgkkkgatfvidcgkpvEDKIMDIASLEKFLQERIKVggkagalgdsvtvtrektkitvtsdsnfskryLKYLTkkylkkhnvrdwlrviasnkdrsvyelryfniaenegeeed
Low Complexity Region (SEG)
MSRgaaaagvkgkkkgaTFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSkrylkyltkkylkkHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED
Disordered region (IsUnstruct)
***************GATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIA********
Disordered Region (DISOPRED)
******************FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRY************
Disordered Region (DISEMBL)
**************KGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIA********
Disordered Region (DISPRO)
***********GKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9M9W1	124	60S ribosomal protein L22	yes	no	0.992	1.0	0.856	4e-49
Q9FE58	124	60S ribosomal protein L22	yes	no	0.776	0.782	0.855	1e-36
Q9SRX7	127	Putative 60S ribosomal pr	no	no	0.928	0.913	0.717	1e-34
Q09668	117	60S ribosomal protein L22	yes	no	0.896	0.957	0.539	3e-27
Q54JE3	116	60S ribosomal protein L22	yes	no	0.856	0.922	0.527	5e-27
P52819	130	60S ribosomal protein L22	yes	no	0.92	0.884	0.516	3e-26
Q54GK6	116	60S ribosomal protein L22	yes	no	0.856	0.922	0.518	3e-26
P47198	128	60S ribosomal protein L22	no	no	0.888	0.867	0.640	3e-25
P67985	128	60S ribosomal protein L22	yes	no	0.888	0.867	0.640	5e-25
P67984	128	60S ribosomal protein L22	no	no	0.888	0.867	0.640	5e-25

>sp|Q9M9W1|RL222_ARATH 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1

 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/125 (85%), Positives = 116/125 (92%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG AA   KGKKKG +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+
Sbjct: 1   MSRGGAAV-AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTI 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREK+KITVT+D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDR++YELRYFNIAENE
Sbjct: 60  TREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE58|RL223_ARATH 60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/97 (85%), Positives = 93/97 (95%)

Query: 18  TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSK 77
           +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FSK
Sbjct: 17  SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSK 76

Query: 78  RYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYF 114
           RYLKYLTKKYLKKHNVRDWLRVIA+NKDR++YELRYF
Sbjct: 77  RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX7|RL221_ARATH Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 102/117 (87%), Gaps = 1/117 (0%)

Query: 1   MSR-GAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVT 59
           M+R GA ++G   KKKG +FVIDC KPV+D I++IA+LEKFLQERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 60  VTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNI 116
           +TR   KI V ++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD++VYE+RYF I
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRI 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q09668|RL22_SCHPO 60S ribosomal protein L22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl22 PE=1 SV=3

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 80/115 (69%), Gaps = 3/115 (2%)

Query: 11  KGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRE-KTKITV 69
           K  K    ++ID    V DKI D+A+ EK+L +RIKV GK G LG SV V+RE  +KI V
Sbjct: 4   KNTKVSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAV 63

Query: 70  TSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 124
            +  +FS RYLKYLTKK+LKKH++RDWLRV+++ K   VYELRY+N+     EEE
Sbjct: 64  IAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54JE3|RL221_DICDI 60S ribosomal protein L22 1 OS=Dictyostelium discoideum GN=rpl22 PE=3 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 80/110 (72%), Gaps = 3/110 (2%)

Query: 14  KKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDS 73
           KK   FVIDC  P   KI+D+A+ EK+L +RIKV  K G LG +V ++++K+KI + +  
Sbjct: 10  KKSHKFVIDCTAP-AGKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDKSKIIINTTI 68

Query: 74  NFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 123
            FSKRYLKYLTKK+LK   +RD+LRV+A+ K+   YELRYFNI ++E +E
Sbjct: 69  PFSKRYLKYLTKKFLKFKQIRDFLRVVATTKN--TYELRYFNIGDSESQE 116

Dictyostelium discoideum (taxid: 44689)

>sp|P52819|RL22_CAEEL 60S ribosomal protein L22 OS=Caenorhabditis elegans GN=rpl-22 PE=1 SV=3

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 5/120 (4%)

Query: 5   AAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALG-DSVTVTRE 63
           +A   ++ KK    F ++C  PVED I+ I  LE FL E+IKV GK G L  ++V V   
Sbjct: 9   SAKKALRKKKVHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVA 68

Query: 64  KTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 123
           K+K++V S+  FSKRYLKYLTKKYLK++++RDWLRV+A NK+   YE+RYF+I  N+GE+
Sbjct: 69  KSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKN--TYEVRYFHI--NDGED 124

Caenorhabditis elegans (taxid: 6239)

>sp|Q54GK6|RL222_DICDI 60S ribosomal protein L22 2 OS=Dictyostelium discoideum GN=rpl22a PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 79/110 (71%), Gaps = 3/110 (2%)

Query: 14  KKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDS 73
           KK   FVIDC  P   KI+D+A+ EK+L +RIKV  K   LG +V ++++K+KI + +  
Sbjct: 10  KKSHKFVIDCTAP-AGKIVDVAAFEKYLHDRIKVDNKVSNLGSNVVISKDKSKIIINTTI 68

Query: 74  NFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 123
            FSKRYLKYLTKK+LK   +RD+LRV+A+ K+   YELRYFNI ++E +E
Sbjct: 69  PFSKRYLKYLTKKFLKFKQIRDFLRVVATTKN--TYELRYFNIGDSESQE 116

Dictyostelium discoideum (taxid: 44689)

>sp|P47198|RL22_RAT 60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 87/114 (76%), Gaps = 3/114 (2%)

Query: 6   AAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREK 64
            A G K KK+   F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K
Sbjct: 8   VAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 67

Query: 65  TKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAE 118
           +KITVTS+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I +
Sbjct: 68  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQ 119

Rattus norvegicus (taxid: 10116)

>sp|P67985|RL22_PIG 60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 87/114 (76%), Gaps = 3/114 (2%)

Query: 6   AAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREK 64
            A G K KK+   F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K
Sbjct: 8   VAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 67

Query: 65  TKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAE 118
           +KITVTS+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I +
Sbjct: 68  SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQ 119

Sus scrofa (taxid: 9823)

>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 87/114 (76%), Gaps = 3/114 (2%)

Query: 6   AAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREK 64
            A G K KK+   F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K
Sbjct: 8   VAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 67

Query: 65  TKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAE 118
           +KITVTS+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I +
Sbjct: 68  SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQ 119

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255542760	125	60S ribosomal protein L22, putative [Ric	1.0	1.0	0.944	2e-53
356535057	124	PREDICTED: 60S ribosomal protein L22-2-l	0.992	1.0	0.92	2e-51
356576805	124	PREDICTED: 60S ribosomal protein L22-2-l	0.992	1.0	0.912	3e-51
118482052	124	unknown [Populus trichocarpa]	0.992	1.0	0.92	6e-51
118484883	124	unknown [Populus trichocarpa]	0.992	1.0	0.92	7e-51
388521565	124	unknown [Lotus japonicus]	0.992	1.0	0.912	1e-50
357442479	119	60S ribosomal protein L22-like protein [	0.944	0.991	0.940	2e-50
255638043	124	unknown [Glycine max]	0.992	1.0	0.904	3e-50
118484642	124	unknown [Populus trichocarpa]	0.968	0.975	0.909	3e-50
351726188	119	uncharacterized protein LOC100305544 [Gl	0.944	0.991	0.932	5e-50

>gi|255542760|ref|XP_002512443.1| 60S ribosomal protein L22, putative [Ricinus communis] gi|223548404|gb|EEF49895.1| 60S ribosomal protein L22, putative [Ricinus communis]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/125 (94%), Positives = 120/125 (96%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG+AAAGVKGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV
Sbjct: 1   MSRGSAAAGVKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TR K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR VYELRYFNIAENE
Sbjct: 61  TRGKSKITVASDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRGVYELRYFNIAENE 120

Query: 121 GEEED 125
           GEEED
Sbjct: 121 GEEED 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535057|ref|XP_003536065.1| PREDICTED: 60S ribosomal protein L22-2-like [Glycine max]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/125 (92%), Positives = 118/125 (94%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG+A A  KGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGDS+TV
Sbjct: 1   MSRGSATAA-KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
            REKTKI VTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRS+YELRYFNIAENE
Sbjct: 60  VREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576805|ref|XP_003556520.1| PREDICTED: 60S ribosomal protein L22-2-like [Glycine max]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/125 (91%), Positives = 118/125 (94%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG+A A  KGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGAL D++TV
Sbjct: 1   MSRGSATAA-KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALADTITV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREKTKI VTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRS+YELRYFNIAENE
Sbjct: 60  TREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482052|gb|ABK92957.1| unknown [Populus trichocarpa]

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/125 (92%), Positives = 118/125 (94%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MS+ A A G KGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGD+VTV
Sbjct: 1   MSK-ATAPGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREK KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAENE
Sbjct: 60  TREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484883|gb|ABK94308.1| unknown [Populus trichocarpa]

 Score =  204 bits (518), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/125 (92%), Positives = 118/125 (94%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MS+ A A G KGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGD+VTV
Sbjct: 1   MSK-ATAPGPKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREK KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR+VYELRYFNIAENE
Sbjct: 60  TREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521565|gb|AFK48844.1| unknown [Lotus japonicus]

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/125 (91%), Positives = 117/125 (93%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG  A G KGKKK  +F IDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGD+VTV
Sbjct: 1   MSRGGVA-GAKGKKKSVSFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREK+KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE
Sbjct: 60  TREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442479|ref|XP_003591517.1| 60S ribosomal protein L22-like protein [Medicago truncatula] gi|355480565|gb|AES61768.1| 60S ribosomal protein L22-like protein [Medicago truncatula] gi|388502928|gb|AFK39530.1| unknown [Medicago truncatula]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 116/118 (98%)

Query: 8   AGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKI 67
           +GVKGKKKG +FVIDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREK+KI
Sbjct: 2   SGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKI 61

Query: 68  TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
           TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDR++YELRYFNIAENEGEEED
Sbjct: 62  TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEEED 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638043|gb|ACU19336.1| unknown [Glycine max]

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/125 (90%), Positives = 117/125 (93%), Gaps = 1/125 (0%)

Query: 1   MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV 60
           MSRG+A A  KGKKKGATF IDC KPVEDKIMDIASLEKFLQERIKVGGKAGAL D++TV
Sbjct: 1   MSRGSATAA-KGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALADTITV 59

Query: 61  TREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
           TREKTKI VTSDSNFSKRYLKYLTKKYLKKHNV DWLRVIASNKDRS+YELRYFNIAENE
Sbjct: 60  TREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVWDWLRVIASNKDRSIYELRYFNIAENE 119

Query: 121 GEEED 125
           GEEED
Sbjct: 120 GEEED 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484642|gb|ABK94193.1| unknown [Populus trichocarpa]

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 116/121 (95%)

Query: 5   AAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREK 64
           A A+G KGKKKG TF +DC KPVEDKIMDIASLEKFLQERIKVGGKAGALGD+VTVTREK
Sbjct: 4   ATASGAKGKKKGVTFTVDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREK 63

Query: 65  TKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 124
           +KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVI+SNKDR+VYELRYFNIAENEGEEE
Sbjct: 64  SKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVISSNKDRNVYELRYFNIAENEGEEE 123

Query: 125 D 125
           D
Sbjct: 124 D 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726188|ref|NP_001236862.1| uncharacterized protein LOC100305544 [Glycine max] gi|255625861|gb|ACU13275.1| unknown [Glycine max]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 116/118 (98%)

Query: 8   AGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKI 67
           +G KGKKKGA+FVIDC KPVEDKIMDIASLEKFLQERIKVGGKAGALGDS+TVTR+K+KI
Sbjct: 2   SGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKI 61

Query: 68  TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
           TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK+RSVYELRYFNIAENEGEEED
Sbjct: 62  TVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKERSVYELRYFNIAENEGEEED 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2078107	124	AT3G05560 [Arabidopsis thalian	0.864	0.870	0.75	3.7e-39
TAIR|locus:2180260	124	AT5G27770 [Arabidopsis thalian	0.864	0.870	0.731	4.3e-38
TAIR|locus:2024715	127	AT1G02830 [Arabidopsis thalian	0.864	0.850	0.587	2.4e-28
RGD|621189	128	Rpl22 "ribosomal protein L22"	0.84	0.820	0.546	2.6e-24
UNIPROTKB|F1N301	128	RPL22 "Uncharacterized protein	0.84	0.820	0.546	4.2e-24
UNIPROTKB|P35268	128	RPL22 "60S ribosomal protein L	0.84	0.820	0.546	4.2e-24
UNIPROTKB|P67985	128	RPL22 "60S ribosomal protein L	0.84	0.820	0.546	4.2e-24
MGI|MGI:99262	128	Rpl22 "ribosomal protein L22"	0.84	0.820	0.546	4.2e-24
RGD|2324589	128	LOC100363800 "ribosomal protei	0.84	0.820	0.546	4.2e-24
UNIPROTKB|Q6PDV8	128	LOC100363800 "RCG31311" [Rattu	0.84	0.820	0.546	4.2e-24

TAIR|locus:2078107 AT3G05560 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 81/108 (75%), Positives = 90/108 (83%)

Query:    18 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSX 77
             +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+TREK+KITVT+D  FS 
Sbjct:    17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSK 76

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          HNVRDWLRVIA+NKDR++YELRYFNIAENEGEEED
Sbjct:    77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2180260 AT5G27770 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/108 (73%), Positives = 89/108 (82%)

Query:    18 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSX 77
             +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FS 
Sbjct:    17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSK 76

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          HNVRDWLRVIA+NKDR++YELRYFNIAENE EEED
Sbjct:    77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2024715 AT1G02830 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 64/109 (58%), Positives = 80/109 (73%)

Query:    18 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSX 77
             +FVIDC KPV+D I++IA+LEKFLQERIKV GKAGALG+SV++TR   KI V ++SNFS 
Sbjct:    19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSK 78

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGE-EED 125
                          +N+RDWLRVIASNKD++VYE+RYF I +     EED
Sbjct:    79 RYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEED 127

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

RGD|621189 Rpl22 "ribosomal protein L22" [Rattus norvegicus (taxid:10116)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0046632 "alpha-beta T cell differentiation" evidence=ISO

UNIPROTKB|F1N301 RPL22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P35268 RPL22 "60S ribosomal protein L22" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0003723 "RNA binding" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0046632 "alpha-beta T cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|P67985 RPL22 "60S ribosomal protein L22" [Sus scrofa (taxid:9823)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0008201 "heparin binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:99262 Rpl22 "ribosomal protein L22" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0008201 "heparin binding" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0046632 "alpha-beta T cell differentiation" evidence=IMP

RGD|2324589 LOC100363800 "ribosomal protein L22-like" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q6PDV8 LOC100363800 "RCG31311" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 59/108 (54%), Positives = 73/108 (67%)

Query:    19 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSX 77
             F +DC  PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS 
Sbjct:    21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80

Query:    78 XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                          +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:    81 RYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FE58	RL223_ARATH	No assigned EC number	0.8556	0.776	0.7822	yes	no
Q54GK6	RL222_DICDI	No assigned EC number	0.5181	0.856	0.9224	yes	no
Q23BV5	RL22_TETTS	No assigned EC number	0.5181	0.864	0.9152	N/A	no
P67985	RL22_PIG	No assigned EC number	0.6403	0.888	0.8671	yes	no
Q98TF8	RL22_CHICK	No assigned EC number	0.6666	0.792	0.7734	yes	no
Q9SRX7	RL221_ARATH	No assigned EC number	0.7179	0.928	0.9133	no	no
P13732	RL22_TRIGR	No assigned EC number	0.5775	0.904	0.8692	N/A	no
Q54JE3	RL221_DICDI	No assigned EC number	0.5272	0.856	0.9224	yes	no
Q09668	RL22_SCHPO	No assigned EC number	0.5391	0.896	0.9572	yes	no
P52865	RL22_GADMO	No assigned EC number	0.6190	0.816	0.816	N/A	no
Q4R5I3	RL22_MACFA	No assigned EC number	0.6403	0.888	0.8671	N/A	no
P35268	RL22_HUMAN	No assigned EC number	0.6732	0.784	0.7656	yes	no
P05749	RL22A_YEAST	No assigned EC number	0.4339	0.832	0.8595	yes	no
Q5I0R6	RL22L_XENTR	No assigned EC number	0.5583	0.944	0.9833	yes	no
P52819	RL22_CAEEL	No assigned EC number	0.5166	0.92	0.8846	yes	no
Q9M9W1	RL222_ARATH	No assigned EC number	0.856	0.992	1.0	yes	no
P50886	RL22_XENLA	No assigned EC number	0.6036	0.864	0.8437	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam01776	112	pfam01776, Ribosomal_L22e, Ribosomal L22e protein	5e-59
PTZ00198	122	PTZ00198, PTZ00198, 60S ribosomal protein L22; Pro	3e-47

>gnl|CDD|201965 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family

 Score =  177 bits (450), Expect = 5e-59
 Identities = 77/114 (67%), Positives = 90/114 (78%), Gaps = 2/114 (1%)

Query: 12  GKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTS 71
            KK    FVIDC  PVED I D+A+ EKFL ERIKV GK G LG+ VT+ R+K KITVTS
Sbjct: 1   KKKVTLKFVIDCSHPVEDGIFDVANFEKFLHERIKVNGKTGNLGNKVTIERDKNKITVTS 60

Query: 72  DSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
           +  FSKRYLKYLTKKYLKK+N+RDWLRV+A++KD   YELRYFNI E+E EEE+
Sbjct: 61  EIPFSKRYLKYLTKKYLKKNNLRDWLRVVATSKD--SYELRYFNINEDEDEEEE 112

Length = 112

>gnl|CDD|173474 PTZ00198, PTZ00198, 60S ribosomal protein L22; Provisional

 Score =  147 bits (374), Expect = 3e-47
 Identities = 67/110 (60%), Positives = 81/110 (73%), Gaps = 2/110 (1%)

Query: 13  KKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSD 72
           KKK   F IDC  P ED I+D++  E+FLQ+RIKV GK G LG+ V V+REK KITVT+ 
Sbjct: 15  KKKKKKFKIDCTIPAEDGIIDLSGFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTT 74

Query: 73  SNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 122
             FSKRYLKYLTKKYLKK  +RD+LRV+A+ K    YEL+YFNI + E E
Sbjct: 75  IPFSKRYLKYLTKKYLKKKQLRDFLRVVATGKG--TYELKYFNIQDEEEE 122

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PTZ00198	122	60S ribosomal protein L22; Provisional	100.0
PF01776	112	Ribosomal_L22e: Ribosomal L22e protein family; Int	100.0
KOG3434	125	consensus 60S ribosomal protein L22 [Translation,	100.0

>PTZ00198 60S ribosomal protein L22; Provisional

Probab=100.00  E-value=1.4e-66  Score=386.42  Aligned_cols=116  Identities=57%  Similarity=0.903  Sum_probs=109.0

Q ss_pred             ccccccccCccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhhhhH
Q 033169            4 GAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYL   83 (125)
Q Consensus         4 ~~~~~~~~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYLKYL   83 (125)
                      ++....+.++|..++|+||||+||||+|||+++||+|||||||||||+||||+.|+|++++++|+|+|++||||||||||
T Consensus         6 ~~~~~~~~~kk~~~kF~IDCt~PveD~I~d~a~fekfL~erIKV~GK~gnLg~~V~v~~~k~ki~V~s~~~FSKRYLKYL   85 (122)
T PTZ00198          6 RGRKRQKQVKKKKKKFKIDCTIPAEDGIIDLSGFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYL   85 (122)
T ss_pred             ccccccchhcccceEEEEEcCCcccCCcccHHHHHHHHHHhEEECCCcCccCCcEEEEEECCEEEEEecccccHHHHHHH
Confidence            44445566678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccCCCceEEEEeccCCCCeEEEEeeeecCCCC
Q 033169           84 TKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEG  121 (125)
Q Consensus        84 tKKyLKk~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~  121 (125)
                      ||||||||+|||||||||++|  ++||||||||++|||
T Consensus        86 TKKyLKK~~LRDwlRVVA~~K--~~YELRYfnI~~d~~  121 (122)
T PTZ00198         86 TKKYLKKKQLRDFLRVVATGK--GTYELKYFNIQDEEE  121 (122)
T ss_pred             HHHHHhhhhhhheEEEEecCC--CeEEEEEEEecCcCC
Confidence            999999999999999999999  999999999976654

>PF01776 Ribosomal_L22e: Ribosomal L22e protein family; InterPro: IPR002671 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1e-66  Score=382.62  Aligned_cols=112  Identities=69%  Similarity=1.079  Sum_probs=91.3

Q ss_pred             CccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhhhhHHHhhhhcc
Q 033169           12 GKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKH   91 (125)
Q Consensus        12 ~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYLKYLtKKyLKk~   91 (125)
                      +||+.++|+||||+||+|||||+|+||+|||+||||||++||||+.|+|++++++|+|+|++|||||||||||||||||+
T Consensus         1 kkk~~~kF~IDCt~pveD~I~d~~~fe~fL~erIKV~gk~gnlg~~V~i~~~~~ki~V~s~v~fsKrYLKYLTKKyLKK~   80 (112)
T PF01776_consen    1 KKKQTLKFTIDCTHPVEDGIMDPADFEKFLQERIKVNGKTGNLGNKVTISRDKNKITVTSEVPFSKRYLKYLTKKYLKKN   80 (112)
T ss_dssp             --EEEEEEEEE-HHSSSTS---SHHHHHHHHHHHHHHSCSSSSTTTEEEEE-SSEEEEEESSS-SHHHHHHHHHHHHTTS
T ss_pred             CCcccEEEEEEeCCcccCceecHHHHHHHHHHheEeCCcccccCCeEEEEecCCEEEEEecccccHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeccCCCCeEEEEeeeecCCCCCCCC
Q 033169           92 NVRDWLRVIASNKDRSVYELRYFNIAENEGEEED  125 (125)
Q Consensus        92 ~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e~ee  125 (125)
                      +|||||||||++|  ++||||||||++|||||||
T Consensus        81 ~LRdwlrVva~~K--~~YeLrYfni~~d~ee~e~  112 (112)
T PF01776_consen   81 NLRDWLRVVASSK--DTYELRYFNINQDEEEEEE  112 (112)
T ss_dssp             SSTTTEEECCSCS--TCEEEEE------------
T ss_pred             chhheEEEEEcCC--CeEEEEEEecCCCcccccC
Confidence            9999999999999  9999999999999888886

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. Rattus norvegicus (Rat) L22 is related to ribosomal proteins from other eukaryotes and is identical in amino acid sequence to human EAP, the EBER 1 (Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) encoded RNA) associated protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_M 4A1B_M 4A19_M 4A18_M 3IZR_W 3IZS_W.

>KOG3434 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-61  Score=360.00  Aligned_cols=123  Identities=63%  Similarity=0.979  Sum_probs=115.8

Q ss_pred             CCcccccccccCccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhh
Q 033169            1 MSRGAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYL   80 (125)
Q Consensus         1 m~r~~~~~~~~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYL   80 (125)
                      |||.+++...+++|..++|+||||+||||||||+|+||+|||||||||||+||||+.|+|++.+++|+|+|+++||+|||
T Consensus         2 ~~k~~~~~~~~~kKv~~~f~iDct~p~eDgI~d~A~fe~fLqerIKv~GK~gnLg~vv~ie~~kskitV~s~~~Fs~ryl   81 (125)
T KOG3434|consen    2 SAKKALRKTAKKKKVHLRFTIDCTNPVEDGILDIADLEKFLQERIKVNGKVGNLGNVVTIERSKSKITVVSTVHFSKRYL   81 (125)
T ss_pred             chhhhhhhccccceeEEEEEEEecCccccccccHHHHHHHHHHHhhhcccccccCCeEEEecCCcEEEEEecCCccHHHH
Confidence            67777775567788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhhccCCCceEEEEeccCCCCeEEEEeeeecCCCCCCCC
Q 033169           81 KYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED  125 (125)
Q Consensus        81 KYLtKKyLKk~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e~ee  125 (125)
                      ||||||||||++|||||||||+++  ++||||||||+++++|+||
T Consensus        82 KyltkkYLkk~~LRdwlrvva~~k--~~yelryf~i~~~~~~~e~  124 (125)
T KOG3434|consen   82 KYLTKKYLKKNNLRDWLRVVATDK--NTYELRYFQISDGEDEEEE  124 (125)
T ss_pred             HHHHHHHHhhhhHHHHHHHhhccC--ceEEEEecccCCCcccccc
Confidence            999999999999999999999999  9999999999988766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3izr_W	130	Localization Of The Large Subunit Ribosomal Protein		3e-42
4a18_M	118	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-17
3izs_W	121	Localization Of The Large Subunit Ribosomal Protein		2e-12
3zf7_V	130	High-resolution Cryo-electron Microscopy Structure		8e-11

>pdb|3IZR|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 90/109 (82%), Gaps = 1/109 (0%)
Query: 18  TFVIDCGKPVEDKIMDIASLEKFLQERIKV-GGKAGALGDSVTVTREKTKITVTSDSNFS 76
           +FVIDC KPVEDKIM+IASLEKFLQERIKV GGKAG LGDSVTVTR+KTK+TVTSD  FS
Sbjct: 22  SFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFS 81
Query: 77  XXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
                         HNVRDWLRVIA+NKDR+VYELRYFNIAENEGEEED
Sbjct: 82  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED 130

>pdb|4A18|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 118

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 19  FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXX 78
           F IDC +PVEDK++ I    +FL+ +IKVGGK G LG+++T++ +  KI V S   FS  
Sbjct: 17  FKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKR 76
Query: 79  XXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 122
                        ++R++L V +S  D++ Y+LRYFNI +++ E
Sbjct: 77  YLKYLTKKYLKKQDLRNYLYVTSS--DKNSYQLRYFNIQQDQAE 118

>pdb|3IZS|W Chain W, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 121

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 18  TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSX 77
           TF +D   P E+ + D AS  K+L + IKV G  G LG++VTVT + T +TV S + FS 
Sbjct: 14  TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSG 73
Query: 78  XXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNI 116
                        + +RDW+R +++  +   Y L ++ +
Sbjct: 74  KYLKYLTKKYLKKNQLRDWIRFVSTKTNE--YRLAFYQV 110

>pdb|3ZF7|V Chain V, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 130

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 19  FVIDCGKPVEDKIMD---IASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNF 75
           F IDC  P  D I     +++ +++ Q+ +K+ G+ G L   V V   +  +++T+   +
Sbjct: 26  FKIDCSIPASDGIFSDDILSNFQQYFQDNVKLNGRKGKLTSKVRVNMRENTLSITTTMAY 85
Query: 76  SXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENE 120
                           ++RDW+R++A  KD   Y+L+YFNI + E
Sbjct: 86  RKKYFKYLTKKFLKKKDLRDWIRILAKGKD--TYQLKYFNIQDQE 128
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	4e-54
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	3e-51
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M Length = 118

 Score =  150 bits (380), Expect = 1e-48
 Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)

Query: 4   GAAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRE 63
                  + KK    F IDC +PVEDK++ I    +FL+ +IKVGGK G LG+++T++ +
Sbjct: 2   SFRKKTKQVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISND 61

Query: 64  KTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 122
             KI V S   FSKRYLKYLTKKYLKK ++R++L V +S+K+   Y+LRYFNI +++ E
Sbjct: 62  DKKINVQSTIPFSKRYLKYLTKKYLKKQDLRNYLYVTSSDKN--SYQLRYFNIQQDQAE 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 39  KFLQERIKVGGKA----GALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHN-- 92
           +FL+++I+    A    G++ +++   +   K  +  +    +R +  +   +L K    
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAI-LDFLPKIEEN 558

Query: 93  -VR----DWLRVIASNKDRSVYE 110
            +     D LR+    +D +++E
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3iz5_W	130	60S ribosomal protein L22 (L22E); eukaryotic ribos	100.0
3izc_W	121	60S ribosomal protein RPL22 (L22E); eukaryotic rib	100.0
4a18_M	118	RPL22, ribosomal protein L22; ribosome, eukaryotic	100.0

>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M

Probab=100.00  E-value=1.1e-66  Score=384.27  Aligned_cols=110  Identities=52%  Similarity=0.901  Sum_probs=99.2

Q ss_pred             cCccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhhhhHHHhhhhc
Q 033169           11 KGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKK   90 (125)
Q Consensus        11 ~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYLKYLtKKyLKk   90 (125)
                      +.+|+.++|+||||+||||||||+|+||+||||||||||++||||+.|+|++++++|+|+|++|||||||||||||||||
T Consensus         9 ~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK   88 (118)
T 4a18_M            9 QVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKK   88 (118)
T ss_dssp             ---CCCEEEEEECHHHHHTTCCCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEEEEccCcccCceecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhh
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEeccCCCCeEEEEeeeecCCCCC
Q 033169           91 HNVRDWLRVIASNKDRSVYELRYFNIAENEGE  122 (125)
Q Consensus        91 ~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e  122 (125)
                      |+|||||||||++|  ++||||||||++||||
T Consensus        89 ~~LRDwlRVVA~~K--~~YeLrYfnI~~de~e  118 (118)
T 4a18_M           89 QDLRNYLYVTSSDK--NSYQLRYFNIQQDQAE  118 (118)
T ss_dssp             TTCTTTEEEEEEET--TEEEEEECC-------
T ss_pred             ccccceEEEEecCC--CeEEEEEEeccCcCCC
Confidence            99999999999999  9999999999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00