Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 120
cd00325 230
cd00325, chitinase_glyco_hydro_19, Glycoside hydro
5e-27 pfam00182 232
pfam00182, Glyco_hydro_19, Chitinase class I
3e-23 smart00270 38
smart00270, ChtBD1, Chitin binding domain
7e-07 cd00035 39
cd00035, ChtBD1, Hevein or type 1 chitin binding d
2e-06 pfam00187 38
pfam00187, Chitin_bind_1, Chitin recognition prote
9e-06 cd06921 40
cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chit
7e-05 cd11618 44
cd11618, ChtBD1_1, Hevein or type 1 chitin binding
0.003
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain
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Score = 99.3 bits (248), Expect = 5e-27
Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 42 VTPKFFNGILNQA-DASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVT 100
VT F GI + D+ C K FY+ AF+ A SF FG TG ++ REIAAFFAH +
Sbjct: 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTS 60
Query: 101 HETGHM 106
HETG
Sbjct: 61 HETGGG 66
Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I
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Score = 89.4 bits (222), Expect = 3e-23
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 41 IVTPKFFNGILNQA-DASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHV 99
IVT F+ +L D +C GK FY+ AF+ A SF FG TG ++ REIAAFFA
Sbjct: 1 IVTRSLFDQMLKHRNDGACPGKGFYTYDAFIAAANSFPGFGTTGDDDTRKREIAAFFAQT 60
Query: 100 THETGH 105
+HET
Sbjct: 61 SHETTG 66
>gnl|CDD|214593 smart00270, ChtBD1, Chitin binding domain
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Score = 42.4 bits (100), Expect = 7e-07
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQ+GYCG+ DEYCG G Q
Sbjct: 16 CCSQFGYCGSGDEYCGRGCQSQ 37
>gnl|CDD|211311 cd00035, ChtBD1, Hevein or type 1 chitin binding domain
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Score = 41.2 bits (97), Expect = 2e-06
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQ+GYCGT D+YCG G Q
Sbjct: 16 CCSQYGYCGTGDDYCGEGCQ 35
Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. Length = 39
>gnl|CDD|143950 pfam00187, Chitin_bind_1, Chitin recognition protein
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Score = 39.7 bits (93), Expect = 9e-06
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQ+G+CG++++YCG G Q
Sbjct: 16 CCSQFGWCGSTEDYCGPGCQ 35
>gnl|CDD|211312 cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains
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Score = 37.1 bits (86), Expect = 7e-05
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQWG+CG++D+YCG G Q
Sbjct: 17 CCSQWGWCGSTDDYCGDGCQ 36
This subfamily includes Hevein, a major IgE-binding allergen in natural rubber latex. ChtBD1 is a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. Length = 40
>gnl|CDD|211316 cd11618, ChtBD1_1, Hevein or type 1 chitin binding domain; filamentous ascomycete subfamily
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Score = 33.1 bits (76), Expect = 0.003
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCS +G+CG + ++CG G Q G
Sbjct: 18 CCSAYGWCGNTSDHCGVGCQPG 39
Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. Length = 44
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
120
KOG4742 286
consensus Predicted chitinase [General function pr
99.97 PF00182 232
Glyco_hydro_19: Chitinase class I; InterPro: IPR00
99.96 cd00325 230
chitinase_glyco_hydro_19 Glycoside hydrolase famil
99.95 PF00187 40
Chitin_bind_1: Chitin recognition protein; InterPr
99.09 smart00270 38
ChtBD1 Chitin binding domain.
98.96 cd00035 40
ChtBD1 Chitin binding domain, involved in recognit
98.59 cd06918 51
ChtBD1_like Domain observed in several metazoan pr
96.42 COG3179 206
Predicted chitinase [General function prediction o
95.57
>KOG4742 consensus Predicted chitinase [General function prediction only]
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Probab=99.97 E-value=2e-32 Score=219.04 Aligned_cols=108 Identities=39% Similarity=0.668 Sum_probs=100.5
Q ss_pred CChhhhcCCCCccccCCCC-CCCCccccccccchhhhccccc-CCCcCcCCcccchHHHHHHhcCCCcccCCCChhhHHH
Q 033376 13 TSDEYCGAGSQQGPYDAPP-ATNDVSVVDIVTPKFFNGILNQ-ADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMR 90 (120)
Q Consensus 13 ~t~~yCg~gCQsg~C~~~~-~~~~~~vssiiTea~Fd~lf~~-~~~~c~~~~fYty~~fi~Aa~~fp~F~~~G~~~~~kr 90 (120)
++++||+.+|++++|.++. +.+..+|+++||+.+||+||++ ++..|++++||||++||.|++.||+|+++|+..+.||
T Consensus 36 ~~~~~~~~~c~~g~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kr 115 (286)
T KOG4742|consen 36 TTPPYCKFGCGPGPCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKR 115 (286)
T ss_pred cccccccCCCCCCCCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccch
Confidence 8999999999999998863 4467899999999999999999 5455999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCC---------C----CeEEeeccCC-CCCCCC
Q 033376 91 EIAAFFAHVTHET---------G----HMADKHDNCG-PAKMND 120 (120)
Q Consensus 91 ElAAf~a~~shET---------~----g~c~~~E~~~-~~~~~~ 120 (120)
||||||||++||| + +|||+||+.+ ...|||
T Consensus 116 eiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~ 159 (286)
T KOG4742|consen 116 EIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCD 159 (286)
T ss_pred hhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCC
Confidence 9999999999999 5 8999999999 889997
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3
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Probab=99.96 E-value=4.8e-30 Score=201.12 Aligned_cols=73 Identities=47% Similarity=0.758 Sum_probs=65.5
Q ss_pred cccchhhhccccc-CCCcCcCCcccchHHHHHHhcCCCcccCCCChhhHHHHHHHHhhhhcCCCCCeEEeeccC
Q 033376 41 IVTPKFFNGILNQ-ADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHMADKHDNC 113 (120)
Q Consensus 41 iiTea~Fd~lf~~-~~~~c~~~~fYty~~fi~Aa~~fp~F~~~G~~~~~krElAAf~a~~shET~g~c~~~E~~ 113 (120)
|||+++||+|||| +++.||+++||||++||+|+++||+|++||+++++||||||||||++|||+|+++++|++
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~ 74 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIG 74 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTS
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccc
Confidence 7999999999999 679999999999999999999999999999999999999999999999998665555543
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain
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Probab=99.95 E-value=2.3e-29 Score=197.09 Aligned_cols=72 Identities=44% Similarity=0.751 Sum_probs=67.0
Q ss_pred ccchhhhccccc-CCCcCcCCcccchHHHHHHhcCCCcccCCCChhhHHHHHHHHhhhhcCCCCCeEEeeccC
Q 033376 42 VTPKFFNGILNQ-ADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHMADKHDNC 113 (120)
Q Consensus 42 iTea~Fd~lf~~-~~~~c~~~~fYty~~fi~Aa~~fp~F~~~G~~~~~krElAAf~a~~shET~g~c~~~E~~ 113 (120)
||+++||+||+| ++..||+++||||++||+||++||+|+++|+++++||||||||||++|||+|+++++|+.
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~ 73 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDG 73 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccc
Confidence 689999999999 688999999999999999999999999999999999999999999999999776666654
Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e
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Probab=99.09 E-value=1.8e-11 Score=72.58 Aligned_cols=25 Identities=60% Similarity=1.375 Sum_probs=22.0
Q ss_pred cccccccccccCChhhhcCCCCcccc
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPY 27 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C 27 (120)
++|||+|||||+|++||+.+||+ +|
T Consensus 16 ~~CCS~~G~CG~t~~yCg~gCQ~-~C 40 (40)
T PF00187_consen 16 GLCCSQYGYCGTTSDYCGAGCQS-QC 40 (40)
T ss_dssp G-EEETTSBEESSHHHHSTTEES-ST
T ss_pred CCccCCCCcccCChhhhhccccc-CC
Confidence 68999999999999999999995 45
g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
>smart00270 ChtBD1 Chitin binding domain
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Probab=98.96 E-value=2.5e-10 Score=67.02 Aligned_cols=24 Identities=63% Similarity=1.430 Sum_probs=22.5
Q ss_pred cccccccccccCChhhhcCCCCcc
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQG 25 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg 25 (120)
++|||+|||||++.+||+.|||++
T Consensus 14 ~~CCS~~G~CG~t~~yCg~gCqs~ 37 (38)
T smart00270 14 NLCCSQFGYCGSGDEYCGKGCQSQ 37 (38)
T ss_pred CCccCCCcCccCCHHHHhccccCC
Confidence 589999999999999999999984
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K
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Probab=98.59 E-value=1.7e-08 Score=59.69 Aligned_cols=26 Identities=62% Similarity=1.352 Sum_probs=24.0
Q ss_pred cccccccccccCChhhhcCCCCccccC
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPYD 28 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C~ 28 (120)
++|||++||||++.+||+.+||++ |.
T Consensus 14 ~~CCS~~G~CG~t~~~Cg~gcq~~-c~ 39 (40)
T cd00035 14 GLCCSQFGYCGTTDDYCGRGCQSG-CW 39 (40)
T ss_pred CccccccccccCCccccccccccc-cC
Confidence 579999999999999999999997 64
lactis killer toxin alpha subunit, occurs singly or multiply
>cd06918 ChtBD1_like Domain observed in several metazoan proteins
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Probab=96.42 E-value=0.0014 Score=40.71 Aligned_cols=21 Identities=48% Similarity=1.159 Sum_probs=18.2
Q ss_pred cccccccccccCChhhhc-CCC
Q 033376 2 WQCCSQWGYCGTSDEYCG-AGS 22 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg-~gC 22 (120)
..|||.+||||+|.+||. .+|
T Consensus 27 ~pCCS~~gwCG~t~~hC~C~~C 48 (51)
T cd06918 27 KPCCSNGGYCGSGSEHCDCPGC 48 (51)
T ss_pred CcccCCCceeCCCcccccCCCC
Confidence 469999999999999996 555
The pattern of conserved cysteine residues resembles that of chitin binding domains found in plants and fungi.
>COG3179 Predicted chitinase [General function prediction only]
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Probab=95.57 E-value=0.0047 Score=47.91 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=39.6
Q ss_pred cccchhhhcccccCCCcCcCCcccchHHHHHHhc-CCCcccCCCChhhHHHHHHHHhhhhcCCCCCeEEeec
Q 033376 41 IVTPKFFNGILNQADASCVGKNFYSRSAFLDALG-SFSQFGRTGAEEDTMREIAAFFAHVTHETGHMADKHD 111 (120)
Q Consensus 41 iiTea~Fd~lf~~~~~~c~~~~fYty~~fi~Aa~-~fp~F~~~G~~~~~krElAAf~a~~shET~g~c~~~E 111 (120)
.|++..|.+|+|++ .+.| ..++.|+. ....||- +.+-.+|.||||+.||++||-=+.|
T Consensus 3 ~i~e~~~~ki~p~a-----~k~~---~~v~~al~~~l~~~gi-----~~p~r~AmFlAQ~~HESggf~rl~E 61 (206)
T COG3179 3 TITEVDLRKIFPKA-----RKEF---VDVIVALQPALDEAGI-----TTPLRQAMFLAQVMHESGGFTRLDE 61 (206)
T ss_pred chhHHHHHHhcchh-----hhhh---HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhhcCCceeehh
Confidence 57888999999984 2333 23444444 2335542 3477899999999999999765555
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 120
d1dxja_ 242
d.2.1.1 (A:) Plant class II chitinase {Jack bean (
2e-22 d2baaa_ 243
d.2.1.1 (A:) Plant class II chitinase {Barley (Hor
1e-21 d9wgaa4 42
g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {W
2e-08 d9wgaa2 34
g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Whe
3e-08 d9wgaa3 43
g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wh
4e-08 d9wgaa1 52
g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Whea
5e-08 d1ulka2 41
g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phy
7e-07 d1en2a1 45
g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Ur
1e-06 d1uhaa1 42
g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phyt
1e-06 d1uhaa2 40
g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phy
2e-06 d1q9ba_ 43
g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 39
1e-05 d1en2a2 41
g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (U
3e-04
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242
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class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Jack bean (Canavalia ensiformis) [TaxId: 3823]
Score = 86.2 bits (213), Expect = 2e-22
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 38 VVDIVTPKFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFF 96
V ++ F+ +L ++ D +C GK FYS +AF+ A SF FG TG RE+AAF
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 97 AHVTHETGH 105
A +HET
Sbjct: 62 AQTSHETTG 70
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243
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class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 83.5 bits (206), Expect = 1e-21
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 37 SVVDIVTPKFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAF 95
SV IV+ F+ +L ++ D +C K FY+ AF+ A +F FG TG+ + RE+AAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60
Query: 96 FAHVTHETGH 105
A +HET
Sbjct: 61 LAQTSHETTG 70
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 42
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class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Score = 45.1 bits (107), Expect = 2e-08
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCS+WG CG YCGAG Q G DA
Sbjct: 17 CCSKWGSCGIGPGYCGAGCQSGGCDA 42
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 34
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class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Score = 44.0 bits (104), Expect = 3e-08
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 3 QCCSQWGYCGTSDEYCGAGSQQGP 26
CCSQ+G+CG EYCGAG Q GP
Sbjct: 7 HCCSQYGHCGFGAEYCGAGCQGGP 30
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 43
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class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Score = 44.0 bits (104), Expect = 4e-08
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGP 26
CCSQWG+CG E+CG G Q G
Sbjct: 17 CCSQWGFCGLGSEFCGGGCQSGA 39
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 52
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class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Score = 44.1 bits (104), Expect = 5e-08
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDAPPAT 33
CCSQ+GYCG +YCG G Q G
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNGACWTSKRC 46
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 41
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-C
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Score = 40.9 bits (96), Expect = 7e-07
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGP 26
CCSQ+G+CG SD +CG G Q
Sbjct: 17 CCSQYGWCGNSDGHCGEGCQSQC 39
>d1en2a1 g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Urtica dioica), UDA [TaxId: 3501]} Length = 45
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Isolectin VI
species: Stinging nettle (Urtica dioica), UDA [TaxId: 3501]
Score = 40.1 bits (94), Expect = 1e-06
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCS WG+CG S+ YCG +
Sbjct: 17 CCSIWGWCGDSEPYCGRTCE 36
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 42
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-D
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Score = 40.1 bits (94), Expect = 1e-06
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQWGYCGT+D YCG G Q
Sbjct: 18 CCSQWGYCGTTDNYCGQGCQ 37
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 40
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-D
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Score = 39.7 bits (93), Expect = 2e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCS++G+CG SD++C G Q
Sbjct: 17 CCSKYGWCGYSDDHCEDGCQSQ 38
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Length = 43
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Hevein
species: Hevea brasiliensis [TaxId: 3981]
Score = 37.4 bits (87), Expect = 1e-05
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 4 CCSQWGYCGTSDEYCGA 20
CCSQWG+CG++DEYC
Sbjct: 17 CCSQWGWCGSTDEYCSP 33
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 120
d2baaa_ 243
Plant class II chitinase {Barley (Hordeum vulgare)
99.97 d1dxja_ 242
Plant class II chitinase {Jack bean (Canavalia ens
99.97 d9wgaa2 34
Wheat germ agglutinin (WGA) {Wheat (Triticum aesti
99.56 d9wgaa3 43
Wheat germ agglutinin (WGA) {Wheat (Triticum aesti
99.26 d9wgaa4 42
Wheat germ agglutinin (WGA) {Wheat (Triticum aesti
99.23 d9wgaa1 52
Wheat germ agglutinin (WGA) {Wheat (Triticum aesti
99.23 d1uhaa1 42
Lectin-D {American pokeweed (Phytolacca americana)
99.07 d1ulka2 41
Lectin-C {American pokeweed (Phytolacca americana)
99.07 d1uhaa2 40
Lectin-D {American pokeweed (Phytolacca americana)
99.07 d1en2a1 45
Isolectin VI {Stinging nettle (Urtica dioica), UDA
99.03 d1q9ba_ 43
Hevein {Hevea brasiliensis [TaxId: 3981]}
98.95 d1en2a2 41
Isolectin VI {Stinging nettle (Urtica dioica), UDA
98.78 d1mmca_ 30
Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth
98.62 d1p9ga_ 41
Antifungal peptide 2 {Hardy rubber tree (Eucommia
97.92
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=99.97 E-value=1.4e-32 Score=213.69 Aligned_cols=84 Identities=35% Similarity=0.574 Sum_probs=80.1
Q ss_pred cccccccchhhhccccc-CCCcCcCCcccchHHHHHHhcCCCcccCCCChhhHHHHHHHHhhhhcCCCC-----------
Q 033376 37 SVVDIVTPKFFNGILNQ-ADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETG----------- 104 (120)
Q Consensus 37 ~vssiiTea~Fd~lf~~-~~~~c~~~~fYty~~fi~Aa~~fp~F~~~G~~~~~krElAAf~a~~shET~----------- 104 (120)
+|++|||+++||+|||| ++..||+++||||++||+|+++||+|+++|+++++||||||||||++|||+
T Consensus 1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~~~ 80 (243)
T d2baaa_ 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAF 80 (243)
T ss_dssp CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTSTTTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGG
T ss_pred CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhchhhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCCch
Confidence 58999999999999999 778899999999999999999999999999999999999999999999996
Q ss_pred --CeEEeeccCCCCCCCC
Q 033376 105 --HMADKHDNCGPAKMND 120 (120)
Q Consensus 105 --g~c~~~E~~~~~~~~~ 120 (120)
|||+++|+++...|||
T Consensus 81 ~~g~~~~~e~~~~~~yc~ 98 (243)
T d2baaa_ 81 AWGYCFKQERGASSDYCT 98 (243)
T ss_dssp GCTTCCSBCCSCCCCCCC
T ss_pred hhcccchhccCCcccccc
Confidence 7999999999888886
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Jack bean (Canavalia ensiformis) [TaxId: 3823]
Probab=99.97 E-value=5.3e-32 Score=210.26 Aligned_cols=84 Identities=36% Similarity=0.589 Sum_probs=79.4
Q ss_pred cccccccchhhhccccc-CCCcCcCCcccchHHHHHHhcCCCcccCCCChhhHHHHHHHHhhhhcCCCC-----------
Q 033376 37 SVVDIVTPKFFNGILNQ-ADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETG----------- 104 (120)
Q Consensus 37 ~vssiiTea~Fd~lf~~-~~~~c~~~~fYty~~fi~Aa~~fp~F~~~G~~~~~krElAAf~a~~shET~----------- 104 (120)
+|++|||+++||+|||| ++..||+++||||++||+|+++||+|+++|+.+++||||||||||++|||+
T Consensus 1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fytY~~fi~Aa~~fp~F~~~g~~~~~krelAAFlAq~~hET~g~~~~~e~~~~ 80 (242)
T d1dxja_ 1 DVGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETTGGAAGSPDGPY 80 (242)
T ss_dssp CGGGTSCHHHHHHHTTTTTCTTSSCSSCSCHHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGG
T ss_pred CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhcchhccCCCchhhHHHHHHHHhcccccCCCCcccCCCCcc
Confidence 48999999999999999 778899999999999999999999999999999999999999999999997
Q ss_pred --CeEEeeccCCCCCCCC
Q 033376 105 --HMADKHDNCGPAKMND 120 (120)
Q Consensus 105 --g~c~~~E~~~~~~~~~ 120 (120)
||||++|++++.+||+
T Consensus 81 ~~g~~~~~~~~~~~~~~~ 98 (242)
T d1dxja_ 81 AWGYCFVTERDKSNKYCD 98 (242)
T ss_dssp GCTTCCSBCSCCCCCCCC
T ss_pred ccCcceeecccccccccc
Confidence 6899999988888874
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Probab=99.56 E-value=3.8e-16 Score=86.94 Aligned_cols=29 Identities=59% Similarity=1.193 Sum_probs=26.8
Q ss_pred CcccccccccccCChhhhcCCCCccccCC
Q 033376 1 MWQCCSQWGYCGTSDEYCGAGSQQGPYDA 29 (120)
Q Consensus 1 ~~~CCS~~G~CG~t~~yCg~gCQsg~C~~ 29 (120)
+++|||||||||+|++|||.|||+++|..
T Consensus 5 ~~~CCS~~G~CGtt~~yCg~GCQsG~C~~ 33 (34)
T d9wgaa2 5 NNHCCSQYGHCGFGAEYCGAGCQGGPCRA 33 (34)
T ss_dssp GGCEECTTSBEECSHHHHSTTCCBSSCSS
T ss_pred CCCcccccccccCchhhhcccccCCcccC
Confidence 37999999999999999999999999964
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Probab=99.26 E-value=6.2e-13 Score=77.61 Aligned_cols=28 Identities=50% Similarity=1.316 Sum_probs=26.0
Q ss_pred cccccccccccCChhhhcCCCCccccCC
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPYDA 29 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C~~ 29 (120)
++|||+|||||+|++||+.|||+++|..
T Consensus 15 g~CCS~~G~CG~t~~~Cg~gCqsG~C~~ 42 (43)
T d9wgaa3 15 NLCCSQWGFCGLGSEFCGGGCQSGACST 42 (43)
T ss_dssp GCEECTTSBEECSHHHHSTTCCSSSCSS
T ss_pred CCeeCCCccccCCchhhcCCccCCcCCC
Confidence 6899999999999999999999998853
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Probab=99.23 E-value=1.3e-12 Score=75.92 Aligned_cols=27 Identities=56% Similarity=1.280 Sum_probs=25.4
Q ss_pred cccccccccccCChhhhcCCCCccccC
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPYD 28 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C~ 28 (120)
++|||+|||||+|++||+.|||+++|.
T Consensus 15 g~CCS~~G~CG~t~~~Cg~gCqsG~C~ 41 (42)
T d9wgaa4 15 NYCCSKWGSCGIGPGYCGAGCQSGGCD 41 (42)
T ss_dssp GCEECTTSCEECSHHHHSTTCCBSSCC
T ss_pred CCccCCCccccCCcchhcCCCcCCcCC
Confidence 689999999999999999999998885
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Wheat germ agglutinin (WGA)
species: Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
Probab=99.23 E-value=1.4e-12 Score=78.94 Aligned_cols=29 Identities=48% Similarity=1.145 Sum_probs=27.2
Q ss_pred cccccccccccCChhhhcCCCCccccCCC
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPYDAP 30 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C~~~ 30 (120)
++|||+|||||+|++||+.|||+++|...
T Consensus 15 g~CCS~~G~CG~t~~yCg~gCq~g~C~~~ 43 (52)
T d9wgaa1 15 NLCCSQYGYCGMGGDYCGKGCQNGACWTS 43 (52)
T ss_dssp GCEECTTSCEECSHHHHSTTCCSSSCSSC
T ss_pred CCeeCCCccccCCcchhcCCCcCCcccCC
Confidence 68999999999999999999999999875
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-D
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Probab=99.07 E-value=1.5e-11 Score=71.33 Aligned_cols=26 Identities=65% Similarity=1.538 Sum_probs=23.9
Q ss_pred cccccccccccCChhhhcCCCCccccC
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPYD 28 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C~ 28 (120)
++|||+|||||+|.+||+.||||. |.
T Consensus 16 g~CCS~~G~CG~t~~yCg~GCqsn-C~ 41 (42)
T d1uhaa1 16 GKCCSQWGYCGTTDNYCGQGCQSQ-CD 41 (42)
T ss_dssp GCEECTTSCEESSHHHHSTTCCBC-TT
T ss_pred CCccCCCCcccCchhhhccccccc-CC
Confidence 689999999999999999999995 63
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-C
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Probab=99.07 E-value=1.6e-11 Score=70.79 Aligned_cols=25 Identities=52% Similarity=1.139 Sum_probs=23.6
Q ss_pred cccccccccccCChhhhcCCCCcccc
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPY 27 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C 27 (120)
++|||+|||||+|++||+.||||+ |
T Consensus 15 g~CCS~~G~CG~t~~~Cg~gCqs~-C 39 (41)
T d1ulka2 15 ELCCSQYGWCGNSDGHCGEGCQSQ-C 39 (41)
T ss_dssp GCEECTTSBEECSHHHHSTTCCBC-T
T ss_pred CCccCCCccccCccchhccccccC-C
Confidence 689999999999999999999996 5
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Lectin-D
species: American pokeweed (Phytolacca americana) [TaxId: 3527]
Probab=99.07 E-value=1.9e-11 Score=70.24 Aligned_cols=25 Identities=44% Similarity=1.031 Sum_probs=23.5
Q ss_pred cccccccccccCChhhhcCCCCcccc
Q 033376 2 WQCCSQWGYCGTSDEYCGAGSQQGPY 27 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~gCQsg~C 27 (120)
++|||+|||||+|++||+.|||++ |
T Consensus 15 g~CCS~~G~CG~t~~~Cg~gCqs~-C 39 (40)
T d1uhaa2 15 DMCCSKYGWCGYSDDHCEDGCQSQ-C 39 (40)
T ss_dssp TCEECTTSBEECSHHHHSTTCCBC-C
T ss_pred CCccCCCccccCccccccCccccc-C
Confidence 689999999999999999999986 6
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Hevein
species: Hevea brasiliensis [TaxId: 3981]
Probab=98.95 E-value=9.6e-11 Score=68.17 Aligned_cols=26 Identities=50% Similarity=1.276 Sum_probs=23.4
Q ss_pred cccccccccccCChhhhc--CCCCccccC
Q 033376 2 WQCCSQWGYCGTSDEYCG--AGSQQGPYD 28 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg--~gCQsg~C~ 28 (120)
++|||+|||||+|++||+ .|||+. |.
T Consensus 15 g~CCS~~G~CG~T~~yC~~~~gCqs~-C~ 42 (43)
T d1q9ba_ 15 NLCCSQWGWCGSTDEYCSPDHNCQSN-CK 42 (43)
T ss_dssp GCEECTTSCEESSHHHHCGGGTCCBS-CC
T ss_pred CCccCCcCceeCchhhcCCCCCccCc-CC
Confidence 689999999999999998 599995 74
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Antimicrobial peptide 2, AC-AMP2
domain: Antimicrobial peptide 2, AC-AMP2
species: Tassel (Amaranthus caudatus) [TaxId: 3567]
Probab=98.62 E-value=3.7e-09 Score=55.45 Aligned_cols=20 Identities=55% Similarity=1.396 Sum_probs=18.6
Q ss_pred CcccccccccccCChhhhcC
Q 033376 1 MWQCCSQWGYCGTSDEYCGA 20 (120)
Q Consensus 1 ~~~CCS~~G~CG~t~~yCg~ 20 (120)
|+|||||+||||.+..|||.
T Consensus 11 sgmccsqfgycg~gpkycgr 30 (30)
T d1mmca_ 11 SGMCCSQFGYCGKGPKYCGR 30 (30)
T ss_dssp TTCEECTTSCEESSHHHHCC
T ss_pred CcchhhhcCcccCCccccCC
Confidence 68999999999999999974
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]}
Back Show information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Plant lectins/antimicrobial peptides
family: Hevein-like agglutinin (lectin) domain
domain: Antifungal peptide 2
species: Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]
Probab=97.92 E-value=1.2e-06 Score=48.65 Aligned_cols=20 Identities=60% Similarity=1.511 Sum_probs=18.8
Q ss_pred cccccccccccCChhhhcCC
Q 033376 2 WQCCSQWGYCGTSDEYCGAG 21 (120)
Q Consensus 2 ~~CCS~~G~CG~t~~yCg~g 21 (120)
++|||.|||||++..|||.|
T Consensus 14 glccsiygycgsgaaycgag 33 (41)
T d1p9ga_ 14 GLCCSIYGYCGSGAAYCGAG 33 (41)
T ss_dssp TCEEETTSCEECSHHHHSTT
T ss_pred ceeEEEeeeecCCcceecCC
Confidence 78999999999999999975
