Citrus Sinensis ID: 033416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE
Secondary Structure (PSIPRED)
ccccHHcccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHEccHHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgteevkdqemvdgnapeesqktmpssEEEEAALKKKyggivpkkppliskdherayfdsadwalgkqgvekpkgplealrpklqptqqqtryrkspyapaggedggsappedatane
Flexible Loop (DISEMBL)
msgteevkdqemvdgnapeesqktmpssEEEEAALKkkyggivpkkppliskDHERAYFDSADWALGKQGVEkpkgplealrpklqptqqqtryrkspyapaggedggsappedatane
Low Complexity Region (SEG)
MSGTEEVKDQEMVDGNAPEESQKTMPsseeeeaaLKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE
Disordered region (IsUnstruct)
*********************************************************YFDSADWA******************************************************
Disordered Region (DISOPRED)
**************************************************SKDHERAYFDSADWAL*****************************************************
Disordered Region (DISEMBL)
***********************************KKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKL**********************************
Disordered Region (DISPRO)
******************************EEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQG*************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
225453078	116	PREDICTED: uncharacterized protein LOC10	0.966	0.991	0.808	5e-48
147860363	110	hypothetical protein VITISV_013098 [Viti	0.882	0.954	0.828	2e-44
224119264	114	predicted protein [Populus trichocarpa]	0.915	0.956	0.818	2e-44
224120740	115	predicted protein [Populus trichocarpa]	0.915	0.947	0.827	2e-44
297797425	118	hypothetical protein ARALYDRAFT_496610 [	0.983	0.991	0.756	3e-43
449445951	117	PREDICTED: uncharacterized protein LOC10	0.974	0.991	0.75	3e-42
18424791	115	cAMP-regulated phosphoprotein 19-related	0.957	0.991	0.739	9e-42
358248730	117	uncharacterized protein LOC100817767 [Gl	0.983	1.0	0.731	7e-40
357451455	117	hypothetical protein MTR_2g064890 [Medic	0.983	1.0	0.739	8e-40
356556947	117	PREDICTED: uncharacterized protein LOC10	0.983	1.0	0.731	1e-39

>gi|225453078|ref|XP_002270339.1| PREDICTED: uncharacterized protein LOC100241624 [Vitis vinifera] gi|296087204|emb|CBI33578.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 104/115 (90%)

Query: 5   EEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADW 64
           E V+  E VDGN P+ ++K+MPSS+EEEAA+KK+YGGI+PKKPPLISKDHERAYFDSADW
Sbjct: 2   ENVEQHEQVDGNGPDNAEKSMPSSQEEEAAVKKRYGGIMPKKPPLISKDHERAYFDSADW 61

Query: 65  ALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           ALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAP+ GEDGGS+P ED   NE
Sbjct: 62  ALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPSDGEDGGSSPAEDMATNE 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860363|emb|CAN80447.1| hypothetical protein VITISV_013098 [Vitis vinifera]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 97/105 (92%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MSG E V+  E VDGN P+ ++K+MPSS+EEEAA+KK+YGGI+PKKPPLISKDHERAYFD
Sbjct: 1   MSGMENVEQHEQVDGNGPDNAEKSMPSSQEEEAAVKKRYGGIMPKKPPLISKDHERAYFD 60

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGE 105
           SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAP+ GE
Sbjct: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPSDGE 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119264|ref|XP_002331268.1| predicted protein [Populus trichocarpa] gi|118485324|gb|ABK94521.1| unknown [Populus trichocarpa] gi|222873693|gb|EEF10824.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 99/110 (90%), Gaps = 1/110 (0%)

Query: 10  QEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQ 69
           Q+ VDGN  E+ + +MPSS++EE  +KKKYGGI+PKKPPLISKDHERAYFDSADWALGKQ
Sbjct: 6   QDQVDGNLSED-KSSMPSSKQEEEVVKKKYGGILPKKPPLISKDHERAYFDSADWALGKQ 64

Query: 70  GVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           GV+KPKGPLEALRPKLQPTQQQTRYRKSPYAPA GED GSA  EDATANE
Sbjct: 65  GVDKPKGPLEALRPKLQPTQQQTRYRKSPYAPADGEDAGSASSEDATANE 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120740|ref|XP_002330940.1| predicted protein [Populus trichocarpa] gi|118483473|gb|ABK93635.1| unknown [Populus trichocarpa] gi|118483822|gb|ABK93803.1| unknown [Populus trichocarpa] gi|222873134|gb|EEF10265.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 99/110 (90%), Gaps = 1/110 (0%)

Query: 10  QEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQ 69
           QE V+GN  E+ +  MPS ++EE A+KKKYGGI+PKKPPLISKDHERA+FDSADWALGKQ
Sbjct: 7   QEQVNGNLSED-KSCMPSYKQEEEAVKKKYGGIMPKKPPLISKDHERAFFDSADWALGKQ 65

Query: 70  GVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           G EKPKGPLEALRPKLQPTQQQTRYRKSPYAPA GEDGGSAP EDATANE
Sbjct: 66  GAEKPKGPLEALRPKLQPTQQQTRYRKSPYAPADGEDGGSAPSEDATANE 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797425|ref|XP_002866597.1| hypothetical protein ARALYDRAFT_496610 [Arabidopsis lyrata subsp. lyrata] gi|297312432|gb|EFH42856.1| hypothetical protein ARALYDRAFT_496610 [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 103/119 (86%), Gaps = 2/119 (1%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MS  E+VK+Q  V GN   E++K+MPSS++EEAA+KKKYGG++PKKPPLISKDHERAYFD
Sbjct: 1   MSSAEDVKEQS-VQGNLTNEAEKSMPSSQQEEAAVKKKYGGLMPKKPPLISKDHERAYFD 59

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPA-GGEDGGSAPPEDATAN 118
           SADWALGKQGV KPKGPLEALRPKLQPTQQQTRYRKSP AP+ GGEDGG+A  E  + N
Sbjct: 60  SADWALGKQGVAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSEGGEDGGAAQAEGGSGN 118

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445951|ref|XP_004140735.1| PREDICTED: uncharacterized protein LOC101206373 isoform 1 [Cucumis sativus]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 99/116 (85%)

Query: 4   TEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSAD 63
           +E +K+ E V G+    S+++M SS +EE  +KKKYGGIVPKKPPLISKDHERAYFDSAD
Sbjct: 2   SEHIKEAERVGGDGHVGSEESMSSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSAD 61

Query: 64  WALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           WALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSP AP+ GEDGG+A  E AT+NE
Sbjct: 62  WALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPCAPSDGEDGGTAQNEYATSNE 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424791|ref|NP_568985.1| cAMP-regulated phosphoprotein 19-related protein [Arabidopsis thaliana] gi|16648718|gb|AAL25551.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gi|20453353|gb|AAM19915.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gi|21618212|gb|AAM67262.1| unknown [Arabidopsis thaliana] gi|332010460|gb|AED97843.1| cAMP-regulated phosphoprotein 19-related protein [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%), Gaps = 5/119 (4%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MS  E+VK+Q    GN   E++K+MPSS++EEA +KKKYGG++PKKPPLISKDHERAYFD
Sbjct: 1   MSSAEDVKEQ----GNLTNEAEKSMPSSQQEEAVVKKKYGGLMPKKPPLISKDHERAYFD 56

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPA-GGEDGGSAPPEDATAN 118
           SADWALGKQGV KPKGPLEALRPKLQPTQQQTRYRKSP AP+ GGEDGG+A  E  + N
Sbjct: 57  SADWALGKQGVAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSEGGEDGGAAQAEGGSGN 115

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248730|ref|NP_001240186.1| uncharacterized protein LOC100817767 [Glycine max] gi|255627847|gb|ACU14268.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 101/119 (84%), Gaps = 2/119 (1%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MS  EE KD   +D +A +ES   MPS +++E ++KKKYGG++PKKPPLISKDHERAYFD
Sbjct: 1   MSNIEENKDLGQMDVDASDES-ANMPSPQKQEESVKKKYGGMLPKKPPLISKDHERAYFD 59

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           SADWALGKQG EKPKGPLEALRPKLQPTQQQTRYRKSPYAP+ GE+GGS P EDA +N+
Sbjct: 60  SADWALGKQGGEKPKGPLEALRPKLQPTQQQTRYRKSPYAPS-GEEGGSVPAEDAPSNQ 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451455|ref|XP_003596004.1| hypothetical protein MTR_2g064890 [Medicago truncatula] gi|217075588|gb|ACJ86154.1| unknown [Medicago truncatula] gi|355485052|gb|AES66255.1| hypothetical protein MTR_2g064890 [Medicago truncatula] gi|388494902|gb|AFK35517.1| unknown [Medicago truncatula]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 98/119 (82%), Gaps = 2/119 (1%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MS  E+ KD   +D +A + S   MPS +++E  LKKKYGGIVPKKPPLISKDHERAYFD
Sbjct: 1   MSNIEDSKDIGQMDVDASDGSV-NMPSPQKQEETLKKKYGGIVPKKPPLISKDHERAYFD 59

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           SADWALGKQG  KPKGPLEALRPKLQPTQQQTRYRKSPYAP+ GE+GGS P EDA +NE
Sbjct: 60  SADWALGKQGGSKPKGPLEALRPKLQPTQQQTRYRKSPYAPS-GEEGGSVPSEDAASNE 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556947|ref|XP_003546781.1| PREDICTED: uncharacterized protein LOC100779452 [Glycine max]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 100/119 (84%), Gaps = 2/119 (1%)

Query: 1   MSGTEEVKDQEMVDGNAPEESQKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFD 60
           MS  EE K    +D NA ++S   MPSS+++E A+KKKYGG++PKKPPLISKDHERAYFD
Sbjct: 1   MSNIEENKYLGQMDVNASDKS-ANMPSSQKQEEAVKKKYGGMLPKKPPLISKDHERAYFD 59

Query: 61  SADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPAGGEDGGSAPPEDATANE 119
           SADWALGKQG +KPKGPLEALRPKLQPTQQQTRYRKSPYAP+ GE+GGS P ED  +NE
Sbjct: 60  SADWALGKQGGDKPKGPLEALRPKLQPTQQQTRYRKSPYAPS-GEEGGSVPAEDVPSNE 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2164376	140	AT5G64130 "AT5G64130" [Arabido	0.571	0.485	0.811	1.1e-38
TAIR|locus:2007191	137	AT1G69510 "AT1G69510" [Arabido	0.941	0.817	0.554	3.5e-27
TAIR|locus:505006476	102	AT4G16146 "AT4G16146" [Arabido	0.579	0.676	0.513	3.4e-13

TAIR|locus:2164376 AT5G64130 "AT5G64130" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 56/69 (81%), Positives = 61/69 (88%)

Query:    51 SKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQPTQQQTRYRKSPYAPA-GGEDGGS 109
             ++DHERAYFDSADWALGKQGV KPKGPLEALRPKLQPTQQQTRYRKSP AP+ GGEDGG+
Sbjct:    72 NQDHERAYFDSADWALGKQGVAKPKGPLEALRPKLQPTQQQTRYRKSPCAPSEGGEDGGA 131

Query:   110 APPEDATAN 118
             A  E  + N
Sbjct:   132 AQAEGGSGN 140

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2007191 AT1G69510 "AT1G69510" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 66/119 (55%), Positives = 82/119 (68%)

Query:     5 EEVKDQEMVDGNAPEESQKTMPXXXXXXXXLKKKYGGIVPKKPPLISKDHERAYFDSADW 64
             E+VK +E++D +AP ++ K           +KKKYGG++PKK PLISKDHERA+FDSADW
Sbjct:     2 EDVKGKEIID-DAPIDN-KVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADW 59

Query:    65 ALGKQGVEKPKGPLEALRPKLQPT-QQQTRYRKSPYAPAGGED----GGSAPPEDATAN 118
             ALGKQ  +KPKGPLEALRPKLQPT QQQ R R+  Y+    ED       AP + A A+
Sbjct:    60 ALGKQKGQKPKGPLEALRPKLQPTPQQQPRARRMAYSSGETEDTEIDNNEAPDDQACAS 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006476 AT4G16146 "AT4G16146" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 37/72 (51%), Positives = 47/72 (65%)

Query:    38 KYGGIVPKKPPLISKDHERAYFDSADWALGKQGV---EKPKGPLEALRPKLQPTQQQTRY 94
             KYGG+VPKK PLISKD +RA+FDSADWAL KQ     ++    +E LRPKLQ T ++   
Sbjct:    25 KYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIEKLRPKLQRTPRKQLS 84

Query:    95 RKSPYAPAGGED 106
              + P    G E+
Sbjct:    85 PRRPTCATGNEN 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.128   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       111   0.00091  102 3  11 23  0.47    31
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.30u 0.17s 13.47t   Elapsed:  00:00:00
  Total cpu time:  13.30u 0.17s 13.47t   Elapsed:  00:00:00
  Start:  Sat May 11 02:27:51 2013   End:  Sat May 11 02:27:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam04667	87	pfam04667, Endosulfine, cAMP-regulated phosphoprot	5e-22

>gnl|CDD|147027 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/endosulfine conserved region

 Score = 82.5 bits (204), Expect = 5e-22
 Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 22  QKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGV---EKPKGPL 78
              + S   +E  +KKKYG + PKK PL  K  ER YFDS D+AL K G    + PKGPL
Sbjct: 1   NIDLSSLSPQELKIKKKYGKLPPKKDPLQKKLQERKYFDSGDYALAKAGGSTSQDPKGPL 60

Query: 79  EALRPKLQPTQ--QQTRYRKSPYAPAG 103
             LRPKLQ     +++  R+     A 
Sbjct: 61  GGLRPKLQNPPQLKESIARRRTSGSAA 87

Conserved region found in both cAMP-regulated phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. No function has yet been assigned to ARPP-19. Endosulfine is the endogenous ligand for the ATP-dependent potassium (K ATP) channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism. In both cases the region occupies the majority of the protein. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PF04667	86	Endosulfine: cAMP-regulated phosphoprotein/endosul	99.93
KOG4076	121	consensus Regulator of ATP-sensitive K+ channels A	99.89

>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1

Probab=99.93  E-value=2e-26  Score=161.50  Aligned_cols=81  Identities=40%  Similarity=0.573  Sum_probs=71.5

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCCCCccccccccCccccchhhhhhhcCCCCCCC--CcccCCCCCCCCC--CcCCCCCC
Q 033416           22 QKTMPSSEEEEAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKG--PLEALRPKLQPTQ--QQTRYRKS   97 (119)
Q Consensus        22 ~~~~~~~~~eE~kL~~KYG~L~~Kk~~L~~k~keRKYFDSgDyam~Kag~~~~~~--pie~L~pkl~PTp--q~lp~Rk~   97 (119)
                      +++++++++||++|++|||+|++++.+|++|+++|||||||||||+||++.+...  ++..+.+.+.+|+  .+++.|++
T Consensus         1 ~~~~~~~~~eE~kl~~kYG~l~~~~~~L~kkl~~rKYFDSgDyam~Ka~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~   80 (86)
T PF04667_consen    1 QVDISSLSEEEAKLKAKYGKLPPKKKLLQKKLQKRKYFDSGDYAMAKAGKKSSQGPGPTGKLPPPLPNPPHVSQSIPRRP   80 (86)
T ss_pred             CcccccccHHHHHHHHHcCCCCCCchhhhhhhccccccchHHHHHHHhhcccccCcCcCcCCCCCCCCCcccccccCCCC
Confidence            3688999999999999999999999899999999999999999999999986554  5677888888888  58888988


Q ss_pred             CcccC
Q 033416           98 PYAPA  102 (119)
Q Consensus        98 s~~~~  102 (119)
                      .|.+.
T Consensus        81 ~~~s~   85 (86)
T PF04667_consen   81 TTTSP   85 (86)
T ss_pred             CCCCC
Confidence            88764

No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].

>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.9e-24  Score=157.00  Aligned_cols=80  Identities=23%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCCcccccc-ccCccccchhhhhhhcCCCCCCCCc----c-cC-CCCCCCCCCcCCCC
Q 033416           23 KTMPSSEEEEAALKKKYGGIVPKKPPLISKD-HERAYFDSADWALGKQGVEKPKGPL----E-AL-RPKLQPTQQQTRYR   95 (119)
Q Consensus        23 ~~~~~~~~eE~kL~~KYG~L~~Kk~~L~~k~-keRKYFDSgDyam~Kag~~~~~~pi----e-~L-~pkl~PTpq~lp~R   95 (119)
                      .+...+.++|.+++..||+||.+++||.||+ ++|||||||||||+||++.+..++.    . .+ ++.+|||++++|.|
T Consensus        26 ~~ek~~epkl~~ky~~~GklP~~sd~l~krlQkgrKyFDSGDYam~KAk~~~~~~~~~~~~k~~~~t~~~~~~~e~~p~r  105 (121)
T KOG4076|consen   26 SPEKKEEPKLKKKYPSYGKLPGGSDFLRKRLQKGRKYFDSGDYAMAKAKMKNKQLPTANPDKNNLPTGDHIPTPEDLPAR  105 (121)
T ss_pred             ChhhhhCHHHHHHHHHhCCCCcccHHHHHHHHhcccccccchHHHHHhhcccccCCccccccCCCCCCCCCcCccccccc
Confidence            3444455555566666899999999999998 5699999999999999999877654    1 34 78999999999999


Q ss_pred             CCCcccC
Q 033416           96 KSPYAPA  102 (119)
Q Consensus        96 k~s~~~~  102 (119)
                      ++|+++.
T Consensus       106 k~S~~s~  112 (121)
T KOG4076|consen  106 KPSLVSP  112 (121)
T ss_pred             cccccCC
Confidence            9998885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00