Citrus Sinensis ID: 033485

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccEEccccccccHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHccHHHHHccccccccccccccEEEEcHHHHHccHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHccccccccccEccc
Coil and Loop (DISEMBL)
mgkcpnrkvkkrrySHKTARLAKFLRKGDDAVYdelqrsdsaknplpfdedlpgmgqyyclhcdryfahesvrdehfkTKRHKKRVkemmgpkphtqldadlaagmgmpdngpklmpv
Flexible Loop (DISEMBL)
mgkcpnrkvkkrryshktarlakflrkgddAVYDelqrsdsaknplpFDEDLPGMGQYYCLHCDRYFAHesvrdehfktkrhkkrvkemmgpkphTQLDADLAAGMGMPDNGPKLMPV
Low Complexity Region (SEG)
MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV
Disordered region (IsUnstruct)
***************************************************LPGMGQYYCLHCDRYFAHESV**********************************************
Disordered Region (DISOPRED)
********************LAKFLRKGDDAVYD*****************LPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPD********
Disordered Region (DISEMBL)
****************KTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRD****************GPKPHTQLDADLAAGMGMPDNGPKLMPV
Disordered Region (DISPRO)
***********************FLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q08004	166	Bud site selection protei	yes	no	0.771	0.548	0.405	5e-12
B0BLT0	128	Zinc finger protein 593 O	yes	no	0.567	0.523	0.506	5e-12
Q9U239	128	Zinc finger protein 593 h	yes	no	0.661	0.609	0.425	2e-10
Q553S1	141	Zinc finger protein 593 h	yes	no	0.838	0.702	0.388	3e-10
Q9P370	124	Zinc finger protein bud20	yes	no	0.661	0.629	0.4	3e-10
O00488	134	Zinc finger protein 593 O	yes	no	0.779	0.686	0.424	4e-10
Q8SWF6	104	Zinc finger C2H2 protein	yes	no	0.788	0.894	0.36	1e-08
Q9DB42	134	Zinc finger protein 593 O	yes	no	0.491	0.432	0.474	4e-08
Q9W3Y0	162	Zinc finger protein 593 h	yes	no	0.5	0.364	0.416	4e-08

>sp|Q08004|BUD20_YEAST Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD20 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 10/101 (9%)

Query: 13  RYS---HKTARLAKFLRKGDDAVYDELQRSDSAKNPL--PFDEDLPGMGQYYCLHCDRYF 67
           RYS   +KT R  + L    D +Y++L   +S +  L  P DE  PG+GQ+YC+HC +Y 
Sbjct: 3   RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 58

Query: 68  AHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM 108
                   H K K HK+RVKE+ G  P+TQ  +D AAG  +
Sbjct: 59  ETAIALKTHLKGKVHKRRVKELRGV-PYTQEVSDAAAGYNL 98

Involved in positioning the proximal bud pole signal.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B0BLT0|ZN593_XENTR Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 48  FDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
            D  LPG  Q+YCLHC RYF       EHFKTK HK+R+K+ +  +P+TQ +A+ AAGMG
Sbjct: 51  IDYQLPGNAQHYCLHCSRYFVDLKTLKEHFKTKVHKRRLKQ-LREEPYTQEEAERAAGMG 109

Query: 108 --MPDNGPKLMPV 118
             +P   PKL+ V
Sbjct: 110 SYIP---PKLINV 119

Xenopus tropicalis (taxid: 8364)

>sp|Q9U239|ZN593_CAEEL Zinc finger protein 593 homolog OS=Caenorhabditis elegans GN=Y56A3A.18 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 30  DAVYDELQRSDSAKN-PLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE 88
           D ++++L+   +AK      D DLPG GQ+YC+ C+R+F  E  R  H KTK HK RVK 
Sbjct: 24  DQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKTRQLHRKTKLHKNRVK- 82

Query: 89  MMGPKPHTQLDADLAAGMGM 108
            +   P+TQ +A+ A G G 
Sbjct: 83  TLKEVPYTQAEANAAGGSGF 102

Caenorhabditis elegans (taxid: 6239)

>sp|Q553S1|ZN593_DICDI Zinc finger protein 593 homolog OS=Dictyostelium discoideum GN=DDB_G0275351 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 9   VKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAK-NPLPFDEDLPGMGQYYCLHCDRYF 67
            KK++Y  K AR  K   K  D ++DE+Q     K +    D DLPGMGQ YC+HC ++F
Sbjct: 12  TKKKQY--KRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQNYCIHCSKHF 69

Query: 68  AHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL 115
                   H K K HK RVKE+   KP++  ++ +       DNG KL
Sbjct: 70  VTNEDLQSHIKGKPHKIRVKELK-TKPYSLAESQIPV-----DNGVKL 111

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P370|BUD20_SCHPO Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud20 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 30  DAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM 89
           D ++++L  S+   + LP D DLPG+GQ+YC+ C RYF        H K K HK+R+K +
Sbjct: 29  DQIHNDLTESEKF-DKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKVHKRRLKNL 87

Query: 90  MGPKPHTQLDADLAAGMGMP 109
              +P+TQ +A+ A  +G P
Sbjct: 88  R-EEPYTQEEAEAAVNIGQP 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O00488|ZN593_HUMAN Zinc finger protein 593 OS=Homo sapiens GN=ZNF593 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 7/99 (7%)

Query: 15  SHKTARL--AKFLRKGDDAVYDELQRSDSAK-NPLP---FDEDLPGMGQYYCLHCDRYFA 68
           +H  AR   AK  R   D ++ EL+   SA+  P P   FD DLPG G + CL C RYF 
Sbjct: 12  AHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFI 71

Query: 69  HESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
             +    HF++K HKKR+K+ +  +P++Q +A+ AAGMG
Sbjct: 72  DSTNLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGMG 109

Negatively modulates the DNA binding activity of Oct-2 and therefore its transcriptional regulatory activity. Could act either by binding to DNA octamer or by interacting with Oct-2. May also be a modulator of other octamer-binding proteins.

Homo sapiens (taxid: 9606)

>sp|Q8SWF6|Z231_ENCCU Zinc finger C2H2 protein ECU02_0310 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_0310 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

Query: 7   RKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRY 66
           R+  K R   K ARL  F  K  D V ++++    ++  + +D +LPG G +YC  CDR+
Sbjct: 11  RRSNKNRLRIKRARL--FGPKDIDQVKEDIE----SQKKIEYDPELPGGGHFYCCECDRH 64

Query: 67  FAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGM 106
           F  E V  EH ++  H++R KE+     H+Q DA+ A G+
Sbjct: 65  FITEKVLMEHKRSNPHRRRAKEVREV-AHSQRDAEWAVGL 103

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|Q9DB42|ZN593_MOUSE Zinc finger protein 593 OS=Mus musculus GN=Znf593 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 49  DEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
           D DLPG G + CL C RYF   +    HF++K HKKR+K+ +  +P++Q +A+ AAGMG
Sbjct: 52  DPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGMG 109

Negatively modulates the DNA binding activity of Oct-2 and therefore its transcriptional regulatory activity. Could act either by binding to DNA octamer or by interacting with Oct-2. May also be a modulator of other octamer-binding proteins.

Mus musculus (taxid: 10090)

>sp|Q9W3Y0|ZN593_DROME Zinc finger protein 593 homolog OS=Drosophila melanogaster GN=CG3224 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 48  FDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
            D D PG  Q+YC+HC +YF  ++    HF+TK HK+R+K  +  +P++  +A+ AAG G
Sbjct: 49  VDLDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLK-ALEIEPYSIEEAERAAGRG 107

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
225441207	119	PREDICTED: zinc finger protein 593-like	0.991	0.983	0.820	1e-50
224068781	120	predicted protein [Populus trichocarpa]	0.991	0.975	0.796	9e-48
224138758	122	predicted protein [Populus trichocarpa]	0.991	0.959	0.791	1e-47
449451052	119	PREDICTED: zinc finger protein 593-like	0.974	0.966	0.791	1e-47
351722567	119	uncharacterized protein LOC100527632 [Gl	0.974	0.966	0.791	1e-47
351726910	119	uncharacterized protein LOC100499707 [Gl	0.991	0.983	0.769	1e-47
388519937	119	unknown [Lotus japonicus]	0.991	0.983	0.769	4e-47
116786054	125	unknown [Picea sitchensis]	0.966	0.912	0.763	1e-46
388492068	119	unknown [Medicago truncatula]	0.991	0.983	0.743	4e-45
297739955	120	unnamed protein product [Vitis vinifera]	0.991	0.975	0.745	4e-44

>gi|225441207|ref|XP_002270931.1| PREDICTED: zinc finger protein 593-like [Vitis vinifera]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 105/117 (89%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+RKVKKRRYSHKTAR  KFL KGDDAVYDEL + +  K PLP DEDLPGMGQYYCL
Sbjct: 3   GKCPSRKVKKRRYSHKTARRDKFLLKGDDAVYDELNKPEGEKKPLPVDEDLPGMGQYYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           HCDRYFA+ +VRDEHFKTKRHKKR+K+MMGP PHTQLDADLAAGMG+PDNGPKLM +
Sbjct: 63  HCDRYFANVAVRDEHFKTKRHKKRLKQMMGPAPHTQLDADLAAGMGLPDNGPKLMSI 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068781|ref|XP_002326198.1| predicted protein [Populus trichocarpa] gi|118482423|gb|ABK93134.1| unknown [Populus trichocarpa] gi|222833391|gb|EEE71868.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSA-KNPLPFDEDLPGMGQYYC 60
           GKCP+RKVKKRRYSHKTAR +KFL K DDAVY+ELQ+ D   K+ LP DEDLPGMGQYYC
Sbjct: 3   GKCPSRKVKKRRYSHKTARRSKFLLKADDAVYEELQKPDGEMKSILPLDEDLPGMGQYYC 62

Query: 61  LHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           LHCDRYFA+ +VRDEHFKTKRHKKRVK+MMGP PHTQLDA+LAAGMG PDNG KLM +
Sbjct: 63  LHCDRYFANVTVRDEHFKTKRHKKRVKQMMGPAPHTQLDAELAAGMGAPDNGLKLMSM 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138758|ref|XP_002322894.1| predicted protein [Populus trichocarpa] gi|222867524|gb|EEF04655.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 104/120 (86%), Gaps = 3/120 (2%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQR---SDSAKNPLPFDEDLPGMGQY 58
           GKCP+RKVKKRRYSHKTAR +KFL KGDDAVY+ELQ+    +  +  LP DEDLPGMGQY
Sbjct: 3   GKCPSRKVKKRRYSHKTARRSKFLLKGDDAVYEELQQKPDGEMKEATLPLDEDLPGMGQY 62

Query: 59  YCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           YCLHCDRYFA+ SVRDEHFKTKRHKKRVK+MMGP PHTQLDADLAAGMG PDNG KLM +
Sbjct: 63  YCLHCDRYFANVSVRDEHFKTKRHKKRVKQMMGPAPHTQLDADLAAGMGAPDNGLKLMSM 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451052|ref|XP_004143276.1| PREDICTED: zinc finger protein 593-like [Cucumis sativus] gi|449482412|ref|XP_004156274.1| PREDICTED: zinc finger protein 593-like [Cucumis sativus]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 101/115 (87%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+R VKKRRYSHKTAR  KFL KGDD VY+EL + +  +  LP DEDLPGMGQYYCL
Sbjct: 3   GKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYNELAKPEVERPSLPVDEDLPGMGQYYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLM 116
           HCDRYFA+ SVRDEHFKTKRH+KRVK+M+GP PHTQLDA+LAAGMGMPDNGPKLM
Sbjct: 63  HCDRYFANVSVRDEHFKTKRHRKRVKQMLGPAPHTQLDAELAAGMGMPDNGPKLM 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722567|ref|NP_001235201.1| uncharacterized protein LOC100527632 [Glycine max] gi|255632816|gb|ACU16761.1| unknown [Glycine max]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 100/115 (86%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+R VKKRRYSHKTAR  KF  KGDD VY +L + D  + PLP DEDLPGMGQYYCL
Sbjct: 3   GKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDQERPPLPVDEDLPGMGQYYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLM 116
           HCDRYFA+ +VRDEHFKTKRHKKR+K+MMGP PHTQLDADLA+GMGMPDNGPKLM
Sbjct: 63  HCDRYFANITVRDEHFKTKRHKKRIKQMMGPAPHTQLDADLASGMGMPDNGPKLM 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726910|ref|NP_001238678.1| uncharacterized protein LOC100499707 [Glycine max] gi|255625975|gb|ACU13332.1| unknown [Glycine max]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 101/117 (86%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+R VKKRRYSHKTAR  KF  KGDD VY +L + D  + PLP DEDLPGMGQYYCL
Sbjct: 3   GKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDEERAPLPLDEDLPGMGQYYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           HCDRYF++ +VRDEHFKTKRHKKR+K+MMGP PHTQLDAD+AAGMGMPDNGPKLM +
Sbjct: 63  HCDRYFSNVAVRDEHFKTKRHKKRIKQMMGPAPHTQLDADVAAGMGMPDNGPKLMSM 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519937|gb|AFK48030.1| unknown [Lotus japonicus]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 100/117 (85%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+R VKKRRYSHKTAR  KFL  GDD VY +L + D  + PLP DEDLPGMGQYYCL
Sbjct: 3   GKCPHRHVKKRRYSHKTARRTKFLNMGDDLVYAQLNKPDEERIPLPVDEDLPGMGQYYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           HCDRYF++ +VRDEHFK+KRHKKR K+MMGP PHTQLDADLAAGMGMPDNGPKLM +
Sbjct: 63  HCDRYFSNVAVRDEHFKSKRHKKRAKQMMGPAPHTQLDADLAAGMGMPDNGPKLMSM 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116786054|gb|ABK23952.1| unknown [Picea sitchensis]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 103/114 (90%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+R+VKKRR ++K+AR AKFL KGDDAVY++LQ+ +  + PLP DEDLPGMGQ+YCL
Sbjct: 3   GKCPHRRVKKRRLANKSARRAKFLVKGDDAVYEDLQKPEDERKPLPIDEDLPGMGQFYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL 115
           HCDRYFA+ S+RDEHF+TKRHKKRVK+M GP PHTQLDA+LAAGMGMPDNGPKL
Sbjct: 63  HCDRYFANISIRDEHFQTKRHKKRVKQMQGPAPHTQLDAELAAGMGMPDNGPKL 116

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492068|gb|AFK34100.1| unknown [Medicago truncatula]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 99/117 (84%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCL 61
           GKCP+RKVKKRR SHKT R +KFL KGDD VYDEL +    + PLP DEDLPGMGQ+YCL
Sbjct: 3   GKCPHRKVKKRRLSHKTDRRSKFLIKGDDMVYDELNKPQEDRKPLPLDEDLPGMGQHYCL 62

Query: 62  HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           HCDR+FA  +VRDEHFKTK+H++RVK+MMG  PHTQLDADLA GMGMPDNGPKLM +
Sbjct: 63  HCDRFFASVAVRDEHFKTKKHRRRVKQMMGDAPHTQLDADLAGGMGMPDNGPKLMSM 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739955|emb|CBI30137.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 1/118 (0%)

Query: 2   GKCPNRKVKKRRYSHKTARLAKFLRKGDD-AVYDELQRSDSAKNPLPFDEDLPGMGQYYC 60
           GKCP+RKVKKRRYSHKTAR  KFL K    + +  L + +  K PLP DEDLPGMGQYYC
Sbjct: 3   GKCPSRKVKKRRYSHKTARRDKFLLKDILLSTFSILNKPEGEKKPLPVDEDLPGMGQYYC 62

Query: 61  LHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           LHCDRYFA+ +VRDEHFKTKRHKKR+K+MMGP PHTQLDADLAAGMG+PDNGPKLM +
Sbjct: 63  LHCDRYFANVAVRDEHFKTKRHKKRLKQMMGPAPHTQLDADLAAGMGLPDNGPKLMSI 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2057926	198	AT2G36930 [Arabidopsis thalian	0.983	0.585	0.732	1.9e-44
UNIPROTKB|Q5ZIT0	133	ZNF593 "Uncharacterized protei	0.838	0.744	0.424	3.3e-15
CGD|CAL0006015	176	orf19.2934 [Candida albicans (	0.779	0.522	0.42	1.4e-14
ZFIN|ZDB-GENE-040426-1789	129	znf593 "zinc finger protein 59	0.864	0.790	0.407	1.4e-14
SGD|S000004064	166	BUD20 "Protein involved in bud	0.788	0.560	0.404	2.1e-13
DICTYBASE|DDB_G0275351	141	DDB_G0275351 "C2H2-type zinc f	0.830	0.695	0.392	2.7e-13
WB|WBGene00013236	128	Y56A3A.18 [Caenorhabditis eleg	0.838	0.773	0.384	2.7e-13
UNIPROTKB|O00488	134	ZNF593 "Zinc finger protein 59	0.872	0.768	0.398	3.4e-13
POMBASE|SPAC19B12.11c	124	SPAC19B12.11c "zinc finger pro	0.847	0.806	0.367	4.4e-13
GENEDB_PFALCIPARUM|PF14_0612	104	PF14_0612 "hypothetical protei	0.796	0.903	0.404	6.4e-12

TAIR|locus:2057926 AT2G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 85/116 (73%), Positives = 96/116 (82%)

Query:     1 MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYC 60
             MG+CP RKVKKRR SHKTAR  KF  KGDD VY EL++ ++   PL  DEDLPGMGQ+YC
Sbjct:     1 MGRCPTRKVKKRRLSHKTARRDKFEVKGDDLVYTELRKPETEIKPLQLDEDLPGMGQFYC 60

Query:    61 LHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLM 116
             LHCDRYF++ SVRD+HFKTK+HKKRV  MMG  PH+QLDADLA GMGMPDNGPKLM
Sbjct:    61 LHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGMPDNGPKLM 116

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q5ZIT0 ZNF593 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 45/106 (42%), Positives = 66/106 (62%)

Query:     6 NRKVKKRRYSHKTARLAKFLRKG-D-DAVYDELQRSDSAK--NPLPFDEDLPGMGQYYCL 61
             +R+    R +H  AR AK  R+  D D ++ +L+   +A+     P D DLPG  Q+YCL
Sbjct:     6 SRRTGAHR-AHSLARQAKTKRRRRDLDEIHADLEPGRAARLLRQEP-DPDLPGCAQFYCL 63

Query:    62 HCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
             HC RYF   +   EHF++K HKKR+K++   +P+TQ +A+ AAGMG
Sbjct:    64 HCARYFVDLTSMKEHFRSKVHKKRLKQL-SEEPYTQEEAERAAGMG 108

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

CGD|CAL0006015 orf19.2934 [Candida albicans (taxid:5476)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 42/100 (42%), Positives = 61/100 (61%)

Query:    13 RYSHKTARLAKFLRKGD-DAVYDELQRSDSA---KNPLPFDEDLPGMGQYYCLHCDRYFA 68
             RYS K  +  +  R  D D +Y++L   +S    KN  P DE  PG+GQYYC+ C +YF 
Sbjct:     3 RYSVKRYKTKR--RTRDLDLIYNDLSSPESINKLKNQ-PLDELKPGLGQYYCIQCAKYFE 59

Query:    69 HESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM 108
             ++   D H K+K HK+RVK +   +P+T L+A+ AAG+ M
Sbjct:    60 NQISLDRHTKSKIHKRRVKSL-NERPYTPLEAEAAAGVNM 98

GO:0005730 "nucleolus" evidence=IEA

GO:0000282 "cellular bud site selection" evidence=IEA

ZFIN|ZDB-GENE-040426-1789 znf593 "zinc finger protein 593" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/108 (40%), Positives = 63/108 (58%)

Query:     1 MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKN-PLPFDEDLPGMGQYY 59
             +G   N K K    + KT R  K L    D ++ ++  +++AK      D D+ G GQ+Y
Sbjct:     7 VGNHNNGKKKNIAKTWKTKRRTKDL----DQIHADMIPTNAAKLLKQDVDYDVTGCGQHY 62

Query:    60 CLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
             CLHC RYF       EHFK+K HKKR+K++   +P+TQ +A+ AAGMG
Sbjct:    63 CLHCARYFVDLKTLKEHFKSKPHKKRLKQLR-EEPYTQAEAERAAGMG 109

GO:0008270 "zinc ion binding" evidence=IEA

SGD|S000004064 BUD20 "Protein involved in bud-site selection" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 40/99 (40%), Positives = 56/99 (56%)

Query:    13 RYSHKTARLAKFLRKGD-DAVYDELQRSDSAKNPL--PFDEDLPGMGQYYCLHCDRYFAH 69
             RYS K  +  +  R  D D +Y++L   +S +  L  P DE  PG+GQ+YC+HC +Y   
Sbjct:     3 RYSVKRYKTKR--RTRDLDLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYMET 60

Query:    70 ESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM 108
                   H K K HK+RVKE+ G  P+TQ  +D AAG  +
Sbjct:    61 AIALKTHLKGKVHKRRVKELRGV-PYTQEVSDAAAGYNL 98

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0000282 "cellular bud site selection" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0275351 DDB_G0275351 "C2H2-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 42/107 (39%), Positives = 57/107 (53%)

Query:    10 KKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAK-NPLPFDEDLPGMGQYYCLHCDRYFA 68
             KK++Y  K AR  K   K  D ++DE+Q     K +    D DLPGMGQ YC+HC ++F 
Sbjct:    13 KKKQY--KRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQNYCIHCSKHFV 70

Query:    69 HESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL 115
                    H K K HK RVKE+   KP++  ++ +       DNG KL
Sbjct:    71 TNEDLQSHIKGKPHKIRVKELK-TKPYSLAESQIPV-----DNGVKL 111

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00013236 Y56A3A.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 40/104 (38%), Positives = 58/104 (55%)

Query:     5 PNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKN-PLPFDEDLPGMGQYYCLHC 63
             P+   +K   S+KT +      K  D ++++L+   +AK      D DLPG GQ+YC+ C
Sbjct:     2 PSGGQRKHTISNKTRKRPG---KDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIEC 58

Query:    64 DRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
             +R+F  E  R  H KTK HK RVK +    P+TQ +A+ A G G
Sbjct:    59 ERHFVDEKTRQLHRKTKLHKNRVKTLK-EVPYTQAEANAAGGSG 101

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|O00488 ZNF593 "Zinc finger protein 593" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 45/113 (39%), Positives = 66/113 (58%)

Query:     1 MGKCPNRKVKKRRYSHKTARLAKFLRKGDDA--VYDELQRSDSAK-NPLP---FDEDLPG 54
             MG+  +R+    R +H  AR  K  R+  D   ++ EL+   SA+  P P   FD DLPG
Sbjct:     1 MGR--SRRTGAHR-AHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPG 57

Query:    55 MGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
              G + CL C RYF   +    HF++K HKKR+K++   +P++Q +A+ AAGMG
Sbjct:    58 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL-SVEPYSQEEAERAAGMG 109

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

POMBASE|SPAC19B12.11c SPAC19B12.11c "zinc finger protein, human ZNF593 ortholog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 39/106 (36%), Positives = 60/106 (56%)

Query:     8 KVKKRRYSHKTARLAKFLRK--G-D-DAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHC 63
             +V ++R  H     A F  +  G D D ++++L  S+   + LP D DLPG+GQ+YC+ C
Sbjct:     3 RVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKF-DKLPIDPDLPGLGQHYCIEC 61

Query:    64 DRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMP 109
              RYF        H K K HK+R+K +   +P+TQ +A+ A  +G P
Sbjct:    62 ARYFDSSQALLVHKKGKVHKRRLKNLR-EEPYTQEEAEAAVNIGQP 106

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0612 PF14_0612 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 40/99 (40%), Positives = 55/99 (55%)

Query:     7 RKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNP-LPFDEDLPGMGQYYCLHCDR 65
             RK K  R + K+  L    RK D   YD++  +D    P LP DE+  G GQ+ C  CD 
Sbjct:     6 RKKKNPRNTIKSKILKTRKRKRD---YDQVY-NDYFNEPELPLDENKKGCGQFKCFACDI 61

Query:    66 YFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAA 104
             YF +   + +H K+K+HK+RVK++   K HT  DA  AA
Sbjct:    62 YFINNDAKIQHEKSKKHKRRVKQLNQEKAHTYKDALRAA 100

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_kg.C_280011	SubName- Full=Putative uncharacterized protein; (121 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•	•				0.529
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.510
	grail3.0106016302	hypothetical protein (217 aa)				•	•				0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
COG5112	126	COG5112, UFD2, U1-like Zn-finger-containing protei	8e-20
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	2e-08
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-06

>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General function prediction only]

 Score = 77.8 bits (191), Expect = 8e-20
 Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 3/106 (2%)

Query: 1   MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYC 60
           MG+  + K KKRR +    +  +   +  D + ++L   +S K  LP+D +LPG+GQ+YC
Sbjct: 1   MGRS-DTKRKKRRSNRLRIKRTRLFGRDLDQIKNDLSTKESQKK-LPYDPELPGLGQHYC 58

Query: 61  LHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGM 106
           + C RYF  E    EH K K HK+R KE+    P+TQ DA+ A G+
Sbjct: 59  IECARYFITEKALMEHKKGKVHKRRAKELRE-VPYTQEDAEAAVGL 103

Length = 126

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 57 QYYCLHCDRYFAHESVRDEHFKTKRHK 83
          Q+YC+ CD+YF  E+  + H K+K+HK
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 41.1 bits (97), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 55 MGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM 89
           G +YC  C+  F  E   + H K K+HKK VK+ 
Sbjct: 1  TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	100.0
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	100.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	99.11
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	99.04
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	98.56
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.46
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	98.32
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	98.19
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.57
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	97.31
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.68
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.51
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	96.43
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.42
PLN02748	468	tRNA dimethylallyltransferase	96.4
PHA02768	55	hypothetical protein; Provisional	96.15
smart00355	26	ZnF_C2H2 zinc finger.	95.9
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	94.84
KOG2384	223	consensus Major histocompatibility complex protein	93.57
PHA00616	44	hypothetical protein	93.3
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	93.09
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	93.04
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.98
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.09
KOG1994	268	consensus Predicted RNA binding protein, contains	91.77
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	90.53
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	90.04
KOG3032	264	consensus Uncharacterized conserved protein [Funct	89.04
PTZ00448	373	hypothetical protein; Provisional	88.74
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	88.35
PF13821	55	DUF4187: Domain of unknown function (DUF4187)	87.97
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	87.74
PHA00732	79	hypothetical protein	86.54
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	85.9
KOG2893	341	consensus Zn finger protein [General function pred	81.73
PHA00733	128	hypothetical protein	81.02
PHA00733	128	hypothetical protein	80.18
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	80.07

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=100.00  E-value=1.8e-39  Score=238.47  Aligned_cols=105  Identities=35%  Similarity=0.590  Sum_probs=90.8

Q ss_pred             cchhhhhhhhhcccCC-CchHHHHhhccCcCCCCCCCCCCCCCCCCcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           12 RRYSHKTARLAKFLRK-GDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        12 ~~~~~kt~rrt~~~~k-D~DqI~~dl~~~~~~~~~~~~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      ++.......|++-+++ |||||++||........++++|+||||+|||||++|+|||+++++|+.|++||.||||||+|+
T Consensus        11 ~~~~~hr~~r~r~~~r~dLDqi~~dl~~~~~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   11 HRSNRHRINRTRGRARKDLDQIDEDLETQKGKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             ccchhHHHHhhhccCcccccccccccccccchhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            3333344456666555 999999999765544568999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHhcCCC-CCCCCCCCCC
Q 033485           91 GPKPHTQLDADLAAGMG-MPDNGPKLMP  117 (118)
Q Consensus        91 ~~~pytq~eAe~aag~g-~~dng~~l~~  117 (118)
                       ++||||+|||+|+||| +|++++++++
T Consensus        91 -~~PySQeeAe~A~G~g~vpp~~~~~~s  117 (129)
T KOG3408|consen   91 -EVPYSQEEAEAAAGMGFVPPKKLKVES  117 (129)
T ss_pred             -cCCccHHHHHHhccCCcCCCcchhhhh
Confidence             6799999999999999 8899988765

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=100.00  E-value=1.7e-35  Score=214.91  Aligned_cols=104  Identities=38%  Similarity=0.692  Sum_probs=88.5

Q ss_pred             CCCCCcccccccchhhhhhhhhcccCCCchHHHHhhccCcCCCCCCCCCCCCCCCCcccccccccccCChHHHHHHhcch
Q 033485            1 MGKCPNRKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus         1 ~~~~~~~~~k~~~~~~kt~rrt~~~~kD~DqI~~dl~~~~~~~~~~~~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      ||+- ..|+|+++.+.=.-.|||.+++|||||++||. ..+..+.+|+|++|||+|||||++|+|||+++.+|..|.+||
T Consensus         1 Mgr~-~~Krk~~~~~~~~i~rtr~~grDlDqi~nDls-~~Es~~Klp~Dp~lPGlGqhYCieCaryf~t~~aL~~Hkkgk   78 (126)
T COG5112           1 MGRS-DTKRKKRRSNRLRIKRTRLFGRDLDQIKNDLS-TKESQKKLPYDPELPGLGQHYCIECARYFITEKALMEHKKGK   78 (126)
T ss_pred             CCch-hHhHhhhccchhHHHHHHHhcccHHHHHHhcc-hhhhhccCCCCCCCCCCceeeeehhHHHHHHHHHHHHHhccc
Confidence            4443 34666777666555678888889999999994 344456789999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhCCCCCCHHHHHHhcCCC
Q 033485           81 RHKKRVKEMMGPKPHTQLDADLAAGMG  107 (118)
Q Consensus        81 ~HKrrvK~l~~~~pytq~eAe~aag~g  107 (118)
                      +|+||+|+|+ +.||||++||||+|+.
T Consensus        79 vHkRR~KelR-evpytQe~aeaAvg~~  104 (126)
T COG5112          79 VHKRRAKELR-EVPYTQEDAEAAVGLT  104 (126)
T ss_pred             hhHHHHHHHh-cCcchhHHHHHHhccc
Confidence            9999999999 5699999999999954

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=99.11  E-value=2.8e-11  Score=66.67  Aligned_cols=27  Identities=48%  Similarity=1.077  Sum_probs=25.5

Q ss_pred             cccccccccccCChHHHHHHhcchhhH
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHK   83 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HK   83 (118)
                      ||||++|+++|.++.+|..|++|+.||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            699999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=99.04  E-value=1.5e-10  Score=65.96  Aligned_cols=34  Identities=41%  Similarity=0.796  Sum_probs=31.6

Q ss_pred             CCcccccccccccCChHHHHHHhcchhhHHHHHH
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE   88 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~   88 (118)
                      .|.|||++|+++|.++.++.+|++|+.|+++++.
T Consensus         1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CcCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            3689999999999999999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.56  E-value=5.8e-08  Score=58.25  Aligned_cols=35  Identities=40%  Similarity=0.841  Sum_probs=21.7

Q ss_pred             CCcccccccccccCC--hHHHHHHhcchhhHHHHHHh
Q 033485           55 MGQYYCLHCDRYFAH--ESVRDEHFKTKRHKKRVKEM   89 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~--~~~l~~H~ksK~HKrrvK~l   89 (118)
                      |..|||.+|++||.+  .++.+.|..|..|+.+|++.
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            457999999999954  36889999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.46  E-value=9e-08  Score=51.03  Aligned_cols=25  Identities=32%  Similarity=0.898  Sum_probs=24.3

Q ss_pred             ccccccccccCChHHHHHHhcchhh
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTKRH   82 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK~H   82 (118)
                      |||..|++.|.+..+|..|++|+.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999998

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=98.32  E-value=2e-07  Score=71.84  Aligned_cols=36  Identities=44%  Similarity=0.909  Sum_probs=32.6

Q ss_pred             CCcccccccccccCCh--HHHHHHhcchhhHHHHHHhh
Q 033485           55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~--~~l~~H~ksK~HKrrvK~l~   90 (118)
                      +..|||+|||.|..++  ++.++|+.|++|+++|+.+.
T Consensus         1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY   38 (165)
T KOG3454|consen    1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYY   38 (165)
T ss_pred             CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHH
Confidence            3579999999999875  99999999999999999984

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.3e-07  Score=78.43  Aligned_cols=35  Identities=31%  Similarity=0.644  Sum_probs=33.2

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHHhhC
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMG   91 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~~   91 (118)
                      ++||++|++.|.++.+|..|..||+|+++|.+|+.
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999973

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.57  E-value=5.1e-05  Score=59.54  Aligned_cols=37  Identities=27%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      ..|.|||.+||=-|.+.-+|..|+++|+|.+++..+.
T Consensus        72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             ccCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            4578999999999999999999999999999887663

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=97.31  E-value=7.6e-05  Score=64.29  Aligned_cols=32  Identities=34%  Similarity=0.678  Sum_probs=29.4

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHH
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE   88 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~   88 (118)
                      .+||+.|+|||...++|..|+.||.|.+.++.
T Consensus       238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~  269 (470)
T COG5188         238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQG  269 (470)
T ss_pred             ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhh
Confidence            68999999999999999999999999996544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.11  E-value=0.00024  Score=36.83  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.68  E-value=0.0011  Score=35.49  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=21.0

Q ss_pred             ccccccccccCChHHHHHHhcch
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      |.|..|++.|.+..+|..|.+..
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            78999999999999999999653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.51  E-value=0.00086  Score=44.07  Aligned_cols=31  Identities=32%  Similarity=0.697  Sum_probs=26.5

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHH
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVK   87 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK   87 (118)
                      .+.|..|++.|.+...|..|++++.|.++..
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            6999999999999999999999999988653

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=96.43  E-value=0.0012  Score=51.61  Aligned_cols=36  Identities=31%  Similarity=0.647  Sum_probs=32.5

Q ss_pred             CCcccccccccccCCh--HHHHHHhcchhhHHHHHHhh
Q 033485           55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~--~~l~~H~ksK~HKrrvK~l~   90 (118)
                      |..|||++|.+|..++  ++.+.|.-|+.|.+.++.+.
T Consensus         1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY   38 (188)
T COG5136           1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYY   38 (188)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHH
Confidence            4579999999999985  89999999999999998874

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.42  E-value=0.0016  Score=32.90  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=18.3

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|++.|.+...|..|+.+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6799999999999999999864

...

>PLN02748 tRNA dimethylallyltransferase

Probab=96.40  E-value=0.0027  Score=55.53  Aligned_cols=36  Identities=25%  Similarity=0.508  Sum_probs=32.7

Q ss_pred             Cccccccccc-ccCChHHHHHHhcchhhHHHHHHhhC
Q 033485           56 GQYYCLHCDR-YFAHESVRDEHFKTKRHKKRVKEMMG   91 (118)
Q Consensus        56 GqfYC~~Cdr-~F~~~~~l~~H~ksK~HKrrvK~l~~   91 (118)
                      -+|+|..|++ -|..+..-..|++|+.|+++++.++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            4678999998 89999999999999999999998853

>PHA02768 hypothetical protein; Provisional

Probab=96.15  E-value=0.0026  Score=41.19  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|...++|..|+++
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~   27 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK   27 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh
Confidence            58999999999999999999988

>smart00355 ZnF_C2H2 zinc finger

Probab=95.90  E-value=0.0055  Score=30.97  Aligned_cols=21  Identities=33%  Similarity=0.808  Sum_probs=19.6

Q ss_pred             ccccccccccCChHHHHHHhc
Q 033485           58 YYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |.|..|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            579999999999999999987

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=94.84  E-value=0.017  Score=48.95  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             CCcccccccccccCC-hHHHHHHhcchhhHHHHHH
Q 033485           55 MGQYYCLHCDRYFAH-ESVRDEHFKTKRHKKRVKE   88 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~-~~~l~~H~ksK~HKrrvK~   88 (118)
                      .|.+||.+|-.||.+ ..+...|.+||.|+-+|..
T Consensus         8 ~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~K   42 (336)
T KOG0150|consen    8 QPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAK   42 (336)
T ss_pred             ccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHH
Confidence            578999999999998 5899999999999987654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=93.57  E-value=0.029  Score=45.19  Aligned_cols=41  Identities=20%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             CCCCCCCCCcccccccccccCChHHHHHHhcchhhHHHHHHh
Q 033485           48 FDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM   89 (118)
Q Consensus        48 ~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l   89 (118)
                      .++-.++...|||+.|+.||.+. .--.|++|-.|.-.++.+
T Consensus        75 p~nss~~e~lfyCE~Cd~~ip~~-~~snH~tSttHllsl~~~  115 (223)
T KOG2384|consen   75 PMNSSRDEALFYCEVCDIYIPNS-KKSNHFTSTTHLLSLQHI  115 (223)
T ss_pred             cccCCCCCccchhhhhhhhccCC-CCccchhhHHHHhhhccC
Confidence            34456677789999999999863 335688888887777665

>PHA00616 hypothetical protein

Probab=93.30  E-value=0.033  Score=34.63  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|++-|...+.|..|+++
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~   23 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLS   23 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHH
Confidence            6799999999999999999954

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=93.09  E-value=0.052  Score=45.16  Aligned_cols=32  Identities=31%  Similarity=0.579  Sum_probs=27.4

Q ss_pred             CCCCcccccccccccCChHHHHHHhcchhhHH
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKTKRHKK   84 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKr   84 (118)
                      .|...|-|.+|+|-|.+.++|..|+.|--+-+
T Consensus       211 TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K  242 (279)
T KOG2462|consen  211 TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK  242 (279)
T ss_pred             cCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence            57778999999999999999999998765544

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=93.04  E-value=0.043  Score=47.44  Aligned_cols=35  Identities=26%  Similarity=0.629  Sum_probs=32.0

Q ss_pred             CcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      --+||..|+|.|.+..+...|++||.|+.++....
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~  101 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQ  101 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHHhhcchhhhhhh
Confidence            36899999999999999999999999999988754

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.98  E-value=0.062  Score=29.19  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=17.2

Q ss_pred             ccccccccccCChHHHHHHhc
Q 033485           58 YYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .-|..|+|.| ...+|..|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3699999999 6889999975

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.09  E-value=0.092  Score=33.16  Aligned_cols=26  Identities=27%  Similarity=0.677  Sum_probs=23.1

Q ss_pred             ccccccccccCChHHHHHHhcchhhHHHH
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTKRHKKRV   86 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK~HKrrv   86 (118)
                      -||.-|-..|.+   |..|+.|..|++=.
T Consensus         6 GYCE~C~~ky~~---l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    6 GYCENCRVKYDD---LEEHIQSEKHRKFA   31 (49)
T ss_pred             ccCccccchhhh---HHHHhCCHHHHHHH
Confidence            399999999984   99999999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]

Probab=91.77  E-value=0.091  Score=43.18  Aligned_cols=25  Identities=28%  Similarity=0.576  Sum_probs=22.7

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .+.|||.+|+--|.+...|-.|.-|
T Consensus       237 ~eh~YC~fCG~~y~~~edl~ehCPG  261 (268)
T KOG1994|consen  237 SEHYYCFFCGIKYKDEEDLYEHCPG  261 (268)
T ss_pred             ccceEEEEeccccCCHHHHHHhCCC
Confidence            3689999999999999999999865

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=90.53  E-value=0.13  Score=32.54  Aligned_cols=25  Identities=20%  Similarity=0.655  Sum_probs=22.3

Q ss_pred             cccccccccCChHHHHHHhcchhhHHHH
Q 033485           59 YCLHCDRYFAHESVRDEHFKTKRHKKRV   86 (118)
Q Consensus        59 YC~~Cdr~F~~~~~l~~H~ksK~HKrrv   86 (118)
                      ||.-|--.|.   .|..|+.|..|++=.
T Consensus         7 YCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        7 YCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             ccccHhHHHh---hHHHHhccHHHHHHH
Confidence            9999999998   688999999998744

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=90.04  E-value=0.077  Score=44.47  Aligned_cols=34  Identities=18%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      .|||..|-|.|.+++.|+.|..|--|.|.+-...
T Consensus        25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~   58 (309)
T KOG2837|consen   25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFA   58 (309)
T ss_pred             HHHHHHHHHHhccccccccccCCHHHHHHHHHHH
Confidence            5899999999999999999999999999887764

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.04  E-value=0.4  Score=39.52  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=34.2

Q ss_pred             CCCCcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      -..|+.-|..|+--.. ++.-..|..||+|+-.|..|+
T Consensus        31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            3479999999999999 999999999999999999997

>PTZ00448 hypothetical protein; Provisional

Probab=88.74  E-value=0.71  Score=39.92  Aligned_cols=49  Identities=12%  Similarity=0.221  Sum_probs=40.1

Q ss_pred             CcccccccccccCChHHHHHHhcchhhHHHHHHh-hCCCCCCHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM-MGPKPHTQLDADLAA  104 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l-~~~~pytq~eAe~aa  104 (118)
                      +.|-|..|+-.|.+......|++|=-|+=+||.- .+-.|-|.+|=+...
T Consensus       313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~eF~~~i  362 (373)
T PTZ00448        313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQ  362 (373)
T ss_pred             CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            3688999999999999999999999999888874 445578877765443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=88.35  E-value=0.25  Score=26.67  Aligned_cols=16  Identities=31%  Similarity=0.785  Sum_probs=13.1

Q ss_pred             CCCcccccccccccCC
Q 033485           54 GMGQYYCLHCDRYFAH   69 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~   69 (118)
                      |...|-|..|++.|.+
T Consensus        11 ~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen   11 GEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             SSSSEEESSSSEEESS
T ss_pred             CCCCCCCCCCcCeeCc
Confidence            4456999999999974

...

>PF13821 DUF4187: Domain of unknown function (DUF4187)

Probab=87.97  E-value=0.27  Score=31.46  Aligned_cols=23  Identities=17%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      -+||..|+-.|.+...|..|.-|
T Consensus        27 ~~YC~~Cg~~Y~d~~dL~~~CPG   49 (55)
T PF13821_consen   27 HNYCFWCGTKYDDEEDLERNCPG   49 (55)
T ss_pred             CceeeeeCCccCCHHHHHhCCCC
Confidence            57999999999999999887654

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=87.74  E-value=0.21  Score=43.23  Aligned_cols=29  Identities=31%  Similarity=0.792  Sum_probs=27.2

Q ss_pred             CcccccccccccCChHHHHHHhcchhhHH
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTKRHKK   84 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK~HKr   84 (118)
                      ..+.|.+|-+-|.+...|+.|++-|.|+|
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK~Hrr  222 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRR  222 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhccCcc
Confidence            35799999999999999999999999987

>PHA00732 hypothetical protein

Probab=86.54  E-value=0.46  Score=32.28  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|++.|.+..+|..|.+.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhc
Confidence            6799999999999999999863

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=85.90  E-value=0.41  Score=24.80  Aligned_cols=21  Identities=38%  Similarity=0.781  Sum_probs=15.1

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|+ |..+.+.|..|++.
T Consensus         1 y~C~~C~-y~t~~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCS-YSTSKSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS--EESHHHHHHHHHH
T ss_pred             CCCCCCC-CcCCHHHHHHHHHh
Confidence            6799999 55558999999864

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=81.73  E-value=0.63  Score=38.98  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=21.5

Q ss_pred             cccccccccCChHHHHHHhcchh
Q 033485           59 YCLHCDRYFAHESVRDEHFKTKR   81 (118)
Q Consensus        59 YC~~Cdr~F~~~~~l~~H~ksK~   81 (118)
                      .|-||+|-|.++..|.+|++-|.
T Consensus        12 wcwycnrefddekiliqhqkakh   34 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH   34 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc
Confidence            89999999999999999998874

>PHA00733 hypothetical protein

Probab=81.02  E-value=0.99  Score=32.95  Aligned_cols=20  Identities=20%  Similarity=0.454  Sum_probs=10.4

Q ss_pred             ccccccccccCChHHHHHHh
Q 033485           58 YYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~   77 (118)
                      |-|..|++.|.....|..|.
T Consensus       100 ~~C~~CgK~F~~~~sL~~H~  119 (128)
T PHA00733        100 KVCPVCGKEFRNTDSTLDHV  119 (128)
T ss_pred             ccCCCCCCccCCHHHHHHHH
Confidence            45555555555555555554

>PHA00733 hypothetical protein

Probab=80.18  E-value=1.4  Score=32.23  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.4

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|.+.
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~   95 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRY   95 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhc
Confidence            4569999999999999999999874

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=80.07  E-value=1.1  Score=42.61  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CCCCCCCCcccccccccccCChHHHHHHhcch
Q 033485           49 DEDLPGMGQYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        49 dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      -.+.|-...+||..|++.|.+.++|+.|.++-
T Consensus       871 ~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTH  902 (958)
T KOG1074|consen  871 GRPGPVNNAHVCNVCGKQFSSSAALEIHMRTH  902 (958)
T ss_pred             CCCCcccchhhhccchhcccchHHHHHhhhcC
Confidence            34455556799999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1zr9_A	124	Solution Structure Of A Human C2h2-Type Zinc Finger		5e-11

>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger Protein Length = 124

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 22  AKFLRKGDDAVYDELQRSDSAK-NPLP---FDEDLPGMGQYYCLHCDRYFAHESVRDEHF 77
           AK  R   D ++ EL+   SA+  P P   FD DLPG G + CL C RYF   +    HF
Sbjct: 11  AKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHF 70
Query: 78  KTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
           ++K HKKR+K+ +  +P++Q +A+ AAGMG
Sbjct: 71  RSKDHKKRLKQ-LSVEPYSQEEAERAAGMG 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	1e-26
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	2e-04

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Length = 124

 Score = 94.8 bits (235), Expect = 1e-26
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 9   VKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAK----NPLPFDEDLPGMGQYYCLHCD 64
                +  K  R    L    D ++ EL+   SA+        FD DLPG G + CL C 
Sbjct: 2   HHHHHHLEKAKRRRPDL----DEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACA 57

Query: 65  RYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKLMPV 118
           RYF   +    HF++K HKKR+K+ +  +P++Q +A+ AAGMG     P+ + V
Sbjct: 58  RYFIDSTNLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGMGS-YVPPRRLAV 109

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Length = 77

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
          M ++YC +CD Y  H+  SVR  H   ++HK+ VK+
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	99.97
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.67
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	98.48
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.73
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	97.69
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.01
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.9
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	96.89
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.87
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	96.87
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.82
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.79
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.79
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	96.76
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.76
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.76
1ard_A	29	Yeast transcription factor ADR1; transcription reg	96.69
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	96.69
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	96.67
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	96.67
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.66
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	96.62
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.62
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	96.61
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.6
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.59
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.59
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.59
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	96.59
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	96.57
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	96.57
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.56
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	96.56
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	96.55
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.53
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.52
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	96.52
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	96.52
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.52
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.51
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.51
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	95.52
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	96.5
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.5
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.5
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.49
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.49
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	96.48
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.48
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.48
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	96.48
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.47
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.47
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.47
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.46
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	96.44
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	96.44
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.44
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.44
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.44
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.43
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.43
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.42
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.42
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.42
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.4
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.4
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.4
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.39
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.38
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.38
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.37
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.37
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	96.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.37
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.37
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.37
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.36
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.36
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	96.36
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	96.36
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.35
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.35
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.35
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.35
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.35
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.35
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.35
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.35
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	95.35
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.34
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.33
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	96.33
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.32
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.32
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.31
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.31
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.29
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.28
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.28
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.26
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.26
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	96.24
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.24
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.23
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.22
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.21
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	96.21
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	95.2
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.19
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.19
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.18
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.17
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.16
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.16
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	96.15
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	96.14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.14
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.12
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	96.1
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.09
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.09
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	96.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	96.05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	96.03
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	96.02
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.99
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	95.96
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	95.95
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.72
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	95.71
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.71
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	95.63
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.54
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	95.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	95.52
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.49
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	95.47
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.43
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	95.33
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.25
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.21
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.17
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	95.14
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.11
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.07
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	95.04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.0
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	94.97
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	94.96
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	94.92
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	94.87
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.86
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	94.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	94.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	94.67
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.62
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.42
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	94.4
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	94.39
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.37
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.32
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	94.31
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	94.29
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.24
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.23
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	94.17
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	94.07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	94.06
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	93.96
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	93.93
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.9
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	93.87
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	93.85
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	93.75
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	93.73
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.7
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	93.69
2epa_A	72	Krueppel-like factor 10; transforming growth facto	93.67
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	93.62
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	93.46
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	93.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.45
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	93.44
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	93.42
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	93.37
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	93.36
2epa_A	72	Krueppel-like factor 10; transforming growth facto	93.36
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	93.32
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.23
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	93.21
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.12
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	93.01
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	92.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	92.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	92.74
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	92.67
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.63
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	92.49
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	92.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	92.22
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	92.21
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	92.16
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.13
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	91.93
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	91.89
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	91.7
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	90.92
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	90.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	90.74
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	90.51
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	90.11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	90.06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	88.75
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	88.13
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	87.27
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	87.19
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	87.07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	86.88
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	85.38
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	84.91
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	83.49

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=99.97  E-value=1.2e-31  Score=195.72  Aligned_cols=90  Identities=40%  Similarity=0.613  Sum_probs=62.3

Q ss_pred             hhhhhhcccCCCchHHHHhhccCcCCC-C---CCCCCCCCCCCCcccccccccccCChHHHHHHhcchhhHHHHHHhhCC
Q 033485           17 KTARLAKFLRKGDDAVYDELQRSDSAK-N---PLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGP   92 (118)
Q Consensus        17 kt~rrt~~~~kD~DqI~~dl~~~~~~~-~---~~~~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~~~   92 (118)
                      ||+||++    |+|||++||.++.... .   ++++|+|+||.++|||++|+|+|.+.++|.+|++||.|++||+.|. +
T Consensus        10 ~tkrr~r----DlDqI~~dl~~e~~~k~~~~~~~~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~-~   84 (124)
T 1zr9_A           10 KAKRRRP----DLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS-V   84 (124)
T ss_dssp             ------------------------------CCSCSSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT-S
T ss_pred             hhcccCC----CHHHHHHHHHhHHHHHhhccccccccccCCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc-c
Confidence            6677776    9999999997655332 3   7899999999999999999999999999999999999999999998 6


Q ss_pred             CCCCHHHHHHhcCCCCCCC
Q 033485           93 KPHTQLDADLAAGMGMPDN  111 (118)
Q Consensus        93 ~pytq~eAe~aag~g~~dn  111 (118)
                      .||||+|||+|||||++..
T Consensus        85 ~p~Tq~eAe~aag~g~~~~  103 (124)
T 1zr9_A           85 EPYSQEEAERAAGMGSYVP  103 (124)
T ss_dssp             CSSCTTTSSCSCCCCCCC-
T ss_pred             CCCcHHHHHHhccCCCCCC
Confidence            7999999999999998443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.67  E-value=1.1e-08  Score=72.91  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             CCCCcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      .+.+.|||..|++||.++.+|.+|+.||.|+++++.+.
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            35678999999999999999999999999999999763

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=98.48  E-value=7.6e-08  Score=65.04  Aligned_cols=36  Identities=42%  Similarity=0.872  Sum_probs=31.1

Q ss_pred             CCcccccccccccCC--hHHHHHHhcchhhHHHHHHhh
Q 033485           55 MGQYYCLHCDRYFAH--ESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~--~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      |..|||.+|+.||.+  .++++.|+.|++|+++++...
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy   38 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHH
Confidence            468999999999943  577899999999999998873

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.73  E-value=1.5e-05  Score=56.58  Aligned_cols=35  Identities=23%  Similarity=0.559  Sum_probs=32.3

Q ss_pred             CcccccccccccCChHHHHHHhcchhhHHHHHHhh
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      ..+||.+|+..|.+++.+..|+.|+.|+++|+.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~   65 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHh
Confidence            35899999999999999999999999999998774

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=97.69  E-value=9.8e-06  Score=68.29  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=46.7

Q ss_pred             hhhcccCCCchHHHHhhccCcCC--CCCCCCCCCCCCCCcccccccccccCChHHHHHHhcchhhHHHHH
Q 033485           20 RLAKFLRKGDDAVYDELQRSDSA--KNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVK   87 (118)
Q Consensus        20 rrt~~~~kD~DqI~~dl~~~~~~--~~~~~~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK   87 (118)
                      +|+.-+. |+|.|...+..+.+.  +.. .+.   -..+.+||..|+|+|.++.++..|+.||+|++.+.
T Consensus       258 ~Rt~PL~-dld~~~~~~~~eFE~~~w~~-~~~---~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~  322 (402)
T 4dgw_A          258 FKSYALL-DAAAVENLIKSDFEHSYCRG-SLR---SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNES  322 (402)
T ss_dssp             HHHCTTS-CHHHHHHHHHHHHHHTGGGT-CCE---ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHH
T ss_pred             HHhcCCc-CHHHHHHHHHHHHHHHHhhc-CCc---CCCcCeeehhhhhhhccccccHHHhcccccchhHH
Confidence            4677664 999999877654432  221 121   12457899999999999999999999999999653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.01  E-value=0.00047  Score=36.47  Aligned_cols=26  Identities=31%  Similarity=0.612  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|..|++.|.+...|..|++.
T Consensus         8 ~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCCccCCCCCcccCcHHHHHHHHHH
Confidence            34569999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.90  E-value=0.00058  Score=35.99  Aligned_cols=26  Identities=35%  Similarity=0.537  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.....|..|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHH
Confidence            34579999999999999999999865

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=96.89  E-value=0.00056  Score=35.71  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.87  E-value=0.00048  Score=35.75  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|..|++.|.+...|..|++.
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHH
Confidence            34569999999999999999999753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=96.87  E-value=0.00057  Score=38.84  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             CCCCcccccccccccCChHHHHHHh
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~   77 (118)
                      -|...|.|..|++.|.+.++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4556799999999999999999997

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.82  E-value=0.00075  Score=33.01  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=20.3

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|..|++.|.+...|..|.++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            7899999999999999999864

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.00061  Score=35.98  Aligned_cols=26  Identities=27%  Similarity=0.616  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            6 SGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.00061  Score=35.68  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.....|..|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            34579999999999999999999853

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.76  E-value=0.00051  Score=33.84  Aligned_cols=24  Identities=21%  Similarity=0.571  Sum_probs=21.2

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +.|-|..|++.|.+...|..|++.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHH
Confidence            358899999999999999999854

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.76  E-value=0.00083  Score=35.12  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHH
Confidence            34579999999999999999999753

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.76  E-value=0.00064  Score=35.82  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHH
Confidence            34579999999999999999999853

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=96.69  E-value=0.00074  Score=33.34  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=20.8

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            48899999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.69  E-value=0.00092  Score=33.04  Aligned_cols=23  Identities=22%  Similarity=0.667  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|.+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            58899999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=96.67  E-value=0.00073  Score=33.48  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.67  E-value=0.00076  Score=33.61  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|...+.|..|.++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            58899999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.66  E-value=0.0012  Score=36.00  Aligned_cols=26  Identities=27%  Similarity=0.545  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHHh
Confidence            34569999999999999999999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=96.62  E-value=0.0011  Score=36.04  Aligned_cols=26  Identities=27%  Similarity=0.541  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHHh
Confidence            34569999999999999999999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.62  E-value=0.001  Score=35.85  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+.+.|..|+++
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.61  E-value=0.00082  Score=33.20  Aligned_cols=23  Identities=30%  Similarity=0.665  Sum_probs=20.9

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|++.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            58899999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.60  E-value=0.0015  Score=36.23  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.59  E-value=0.00096  Score=35.10  Aligned_cols=25  Identities=16%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.....|..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            3569999999999999999999863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.59  E-value=0.0014  Score=36.59  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHHh
Confidence            34569999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.59  E-value=0.0014  Score=35.83  Aligned_cols=26  Identities=35%  Similarity=0.591  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhhh
Confidence            34569999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.59  E-value=0.0011  Score=35.86  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.57  E-value=0.0013  Score=36.32  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.....|..|++.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCcCeECCCCCcccCchHHHHHHHhH
Confidence            34579999999999999999999864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.57  E-value=0.00087  Score=33.08  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            58899999999999999999853

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.56  E-value=0.0013  Score=36.09  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHTT
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHH
Confidence            3469999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.56  E-value=0.0015  Score=35.42  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|++.|.+...|..|++.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCCCeECCCCCCCcCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.55  E-value=0.0013  Score=35.58  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+.+.|..|+++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            4569999999999999999999754

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.53  E-value=0.00092  Score=35.37  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CCcccccccccccCCh-HHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHE-SVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~-~~l~~H~ks   79 (118)
                      ...|-|..|++.|... ..|..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCeECCCCChhhccCHHHHHHHHHh
Confidence            3469999999999999 999999853

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.53  E-value=0.0017  Score=35.94  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.52  E-value=0.0019  Score=35.83  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHh
Confidence            4569999999999999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=96.52  E-value=0.0011  Score=35.83  Aligned_cols=26  Identities=23%  Similarity=0.560  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhhh
Confidence            34569999999999999999999753

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.52  E-value=0.002  Score=35.79  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHHh
Confidence            44579999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.52  E-value=0.00094  Score=35.76  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             CCCcccccccccccCChHHHHHH-hc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEH-FK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H-~k   78 (118)
                      |...|.|..|++.|.+...|..| .+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHH
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999 54

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.51  E-value=0.0017  Score=35.99  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.51  E-value=0.0011  Score=35.96  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.2

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|-|.+|++.|.+...|..|++
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHH
Confidence            3456999999999999999999985

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.52  E-value=0.00041  Score=34.03  Aligned_cols=23  Identities=26%  Similarity=0.657  Sum_probs=20.8

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|.+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            47899999999999999999864

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=96.50  E-value=0.0016  Score=35.97  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.50  E-value=0.0018  Score=35.88  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHHH
Confidence            34579999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.50  E-value=0.0014  Score=36.35  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH
Confidence            4569999999999999999999864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.49  E-value=0.002  Score=35.61  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.49  E-value=0.0016  Score=36.21  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHHH
Confidence            34579999999999999999999865

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.48  E-value=0.0016  Score=35.97  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.48  E-value=0.0012  Score=36.10  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHH
Confidence            34569999999999999999999854

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.48  E-value=0.002  Score=35.69  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhh
Confidence            34569999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.48  E-value=0.0019  Score=35.85  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.48  E-value=0.0015  Score=36.09  Aligned_cols=26  Identities=31%  Similarity=0.701  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|..|++.|.+...|..|+++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHh
Confidence            34569999999999999999999753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.47  E-value=0.0018  Score=35.92  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCChhHHHHHhHh
Confidence            4569999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.47  E-value=0.0019  Score=35.88  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.47  E-value=0.002  Score=35.79  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHh
Confidence            34569999999999999999999864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.46  E-value=0.0017  Score=36.14  Aligned_cols=26  Identities=27%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.44  E-value=0.0021  Score=35.58  Aligned_cols=25  Identities=16%  Similarity=0.484  Sum_probs=22.4

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=96.44  E-value=0.0022  Score=35.52  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.44  E-value=0.0015  Score=36.30  Aligned_cols=26  Identities=23%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHH
Confidence            34569999999999999999999863

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.44  E-value=0.002  Score=35.63  Aligned_cols=26  Identities=27%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHh
Confidence            34569999999999999999999865

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.44  E-value=0.0013  Score=34.59  Aligned_cols=23  Identities=17%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999853

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.43  E-value=0.0019  Score=35.46  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.43  E-value=0.0019  Score=35.72  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh
Confidence            4569999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.43  E-value=0.0022  Score=35.62  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCcCCCccChhhCChHHHHHHHHH
Confidence            34569999999999999999999865

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.42  E-value=0.0016  Score=36.00  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCccCCccChhhCCHHHHHHHHHh
Confidence            4569999999999999999999753

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.42  E-value=0.0018  Score=35.90  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.42  E-value=0.0019  Score=35.64  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.40  E-value=0.0018  Score=36.04  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999874

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.40  E-value=0.0018  Score=35.75  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHh
Confidence            4569999999999999999999853

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.40  E-value=0.002  Score=35.69  Aligned_cols=26  Identities=31%  Similarity=0.638  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+.+.|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhh
Confidence            34569999999999999999999865

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.39  E-value=0.0012  Score=32.56  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|.+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            47899999999999999999753

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.38  E-value=0.0018  Score=35.96  Aligned_cols=26  Identities=23%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.....|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHH
Confidence            34569999999999999999999753

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.38  E-value=0.0019  Score=35.75  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCcCccCCCccchhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.37  E-value=0.0019  Score=36.05  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.....|..|++.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHHH
Confidence            34569999999999999999999753

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.37  E-value=0.0017  Score=36.11  Aligned_cols=25  Identities=16%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.37  E-value=0.0025  Score=35.20  Aligned_cols=25  Identities=24%  Similarity=0.684  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|-|..|++.|.+...|..|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCCCEECCccCchhCChHHHHHHhH
Confidence            3456999999999999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.37  E-value=0.0017  Score=35.89  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=96.37  E-value=0.0019  Score=35.91  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.37  E-value=0.0019  Score=35.87  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=96.36  E-value=0.0022  Score=35.40  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCcCeECCccccccCChHHHHHHHHH
Confidence            34569999999999999999999864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=96.36  E-value=0.0021  Score=35.63  Aligned_cols=26  Identities=31%  Similarity=0.630  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTG
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHh
Confidence            34569999999999999999999865

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.36  E-value=0.0019  Score=35.74  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH
Confidence            4569999999999999999999864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=96.36  E-value=0.0021  Score=35.67  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0018  Score=35.86  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHh
Confidence            34569999999999999999999865

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0019  Score=35.93  Aligned_cols=26  Identities=23%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.....|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999863

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0021  Score=35.62  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=96.35  E-value=0.0016  Score=36.18  Aligned_cols=26  Identities=23%  Similarity=0.495  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0019  Score=36.00  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999854

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0016  Score=36.15  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=22.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.+...|..|+++
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999853

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0023  Score=35.32  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.35  E-value=0.0019  Score=35.61  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            4569999999999999999999753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.35  E-value=0.00059  Score=34.06  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|.+...|..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            47899999999999999999864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.34  E-value=0.0019  Score=32.10  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.8

Q ss_pred             cccccccccccCChHHHHHH-hc
Q 033485           57 QYYCLHCDRYFAHESVRDEH-FK   78 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H-~k   78 (118)
                      .|-|..|++.|.+...|..| .+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQK   24 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTT
T ss_pred             CcCCcccCcccCChHHHHHHHHH
Confidence            47899999999999999999 44

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.0017  Score=35.90  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHH
Confidence            34569999999999999999999853

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.002  Score=35.67  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.0015  Score=36.19  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.002  Score=35.56  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCchHHHHHHHHh
Confidence            4569999999999999999999853

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.32  E-value=0.0016  Score=36.02  Aligned_cols=26  Identities=35%  Similarity=0.696  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|..|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHh
Confidence            34569999999999999999999753

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.32  E-value=0.0022  Score=35.48  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHH
Confidence            34569999999999999999999864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.31  E-value=0.0017  Score=35.95  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHH
Confidence            34569999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.31  E-value=0.0017  Score=35.68  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+.+.|..|+++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999754

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.31  E-value=0.002  Score=35.67  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999753

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.29  E-value=0.0019  Score=35.95  Aligned_cols=26  Identities=19%  Similarity=0.523  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHH
Confidence            34579999999999999999999753

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.28  E-value=0.0018  Score=35.97  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+.+.|..|+++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHH
Confidence            34569999999999999999999754

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.28  E-value=0.0021  Score=35.58  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.28  E-value=0.0018  Score=37.13  Aligned_cols=27  Identities=30%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             CcccccccccccCChHHHHHHhcchhh
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTKRH   82 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK~H   82 (118)
                      ..|.|..|++.|.+...|..|+++..+
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            358999999999999999999876544

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.27  E-value=0.0018  Score=35.97  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.....|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHh
Confidence            34569999999999999999999753

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.26  E-value=0.0025  Score=35.29  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.26  E-value=0.0017  Score=36.10  Aligned_cols=26  Identities=23%  Similarity=0.574  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCeECcccChhhCCHHHHHHHHHH
Confidence            34569999999999999999999753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.24  E-value=0.0018  Score=35.61  Aligned_cols=26  Identities=31%  Similarity=0.648  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHh
Confidence            34569999999999999999999853

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.24  E-value=0.0019  Score=35.69  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.23  E-value=0.0015  Score=31.95  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=20.5

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.....|..|.+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999853

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.22  E-value=0.002  Score=35.76  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHH
Confidence            34579999999999999999999864

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.21  E-value=0.0026  Score=35.10  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHH
Confidence            4569999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=96.21  E-value=0.0021  Score=35.71  Aligned_cols=26  Identities=27%  Similarity=0.611  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=95.20  E-value=0.00079  Score=33.50  Aligned_cols=23  Identities=35%  Similarity=0.859  Sum_probs=20.9

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|.+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            58899999999999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.19  E-value=0.0021  Score=35.65  Aligned_cols=25  Identities=32%  Similarity=0.547  Sum_probs=22.1

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|-|..|++.|.+...|..|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHH
Confidence            3456999999999999999999985

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.19  E-value=0.0023  Score=35.47  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHH
Confidence            34569999999999999999999753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.18  E-value=0.0019  Score=35.81  Aligned_cols=25  Identities=16%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHH
Confidence            3469999999999999999999853

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.17  E-value=0.0021  Score=35.59  Aligned_cols=26  Identities=31%  Similarity=0.655  Sum_probs=22.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHH
Confidence            34569999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.16  E-value=0.0026  Score=31.22  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=20.8

Q ss_pred             ccccc--ccccccCChHHHHHHhcc
Q 033485           57 QYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.  .|++.|.+.+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            47899  999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.16  E-value=0.0023  Score=35.53  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECcccCCccCCHhHHHHHHHH
Confidence            4569999999999999999999754

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.15  E-value=0.0024  Score=35.35  Aligned_cols=26  Identities=27%  Similarity=0.592  Sum_probs=22.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|+++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHH
Confidence            34569999999999999999999753

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.15  E-value=0.003  Score=35.55  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHh
Confidence            34579999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=96.14  E-value=0.0024  Score=36.46  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=22.3

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|.|..|++.|.....|..|++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhh
Confidence            3457999999999999999999986

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.14  E-value=0.002  Score=35.70  Aligned_cols=26  Identities=15%  Similarity=0.452  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|.+|++.|.+...|..|+++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999864

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.14  E-value=0.0023  Score=35.48  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHH
Confidence            34569999999999999999999853

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.14  E-value=0.0023  Score=35.47  Aligned_cols=26  Identities=27%  Similarity=0.659  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.+...|..|++.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHH
Confidence            34569999999999999999999853

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.12  E-value=0.0022  Score=36.74  Aligned_cols=25  Identities=20%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|+++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~   26 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRT   26 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHH
Confidence            4568899999999999999988763

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.11  E-value=0.0025  Score=35.29  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccChhhCCHHHHHHHHHH
Confidence            4569999999999999999999753

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.10  E-value=0.0022  Score=35.45  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHH
Confidence            4569999999999999999999854

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.09  E-value=0.0016  Score=35.82  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|.+...|..|+++
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCCeECcccCcccCCHHHHHHHHHH
Confidence            4569999999999999999999753

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.09  E-value=0.0022  Score=35.52  Aligned_cols=25  Identities=28%  Similarity=0.592  Sum_probs=22.1

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|-|..|++.|.+...|..|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHH
Confidence            3456999999999999999999975

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=96.09  E-value=0.0036  Score=31.71  Aligned_cols=23  Identities=22%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             ccccc--ccccccCChHHHHHHhcc
Q 033485           57 QYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.  .|++.|.+.+.|..|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            47897  999999999999999865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=96.05  E-value=0.0027  Score=36.74  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=22.0

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        22 ~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHH
Confidence            3469999999999999999999753

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.04  E-value=0.0037  Score=37.93  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             CCCCCCCcccccccccccCChHHHHHHhcc
Q 033485           50 EDLPGMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        50 edlpg~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...++...|.|..|++.|.+...|..|++.
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~   39 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTV   39 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHH
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHH
Confidence            334556679999999999999999999753

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.03  E-value=0.0029  Score=34.95  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=22.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.....|..|+++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHH
Confidence            34569999999999999999999854

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=96.02  E-value=0.0029  Score=33.73  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.2

Q ss_pred             CCCcccccc--cccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+  |++.|.+.+.|..|+++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            445799995  99999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.99  E-value=0.0029  Score=35.95  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             CCcccccc--cccccCChHHHHHHhcc
Q 033485           55 MGQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+  |++.|.+.+.|..|+++
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            34699986  99999999999999863

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=95.96  E-value=0.0039  Score=31.66  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             ccccc--ccccccCChHHHHHHhcc
Q 033485           57 QYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.  .|++.|.+.+.|..|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHH
Confidence            57899  899999999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=95.95  E-value=0.0038  Score=38.53  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|-|.+|++.|...+.|..|+++
T Consensus        31 kp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C           31 RPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG
T ss_pred             cCeECCCCCCCcCCHHHHHHHhCc
Confidence            468999999999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.72  E-value=0.0043  Score=36.63  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=20.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|++.
T Consensus        38 ~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           38 VKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH
Confidence            3458899999999999999888754

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=95.71  E-value=0.0053  Score=36.89  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=10.8

Q ss_pred             ccccccccccCChHHHHHHhc
Q 033485           58 YYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |.|..|++.|.+...|..|++
T Consensus        50 ~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           50 FQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             EECTTTCCEESCHHHHHHHHT
T ss_pred             eECCCCCchhCCHHHHHHHHH
Confidence            455555555555555555543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.71  E-value=0.0045  Score=52.07  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             Cccccccccc------ccCChHHHHHHhcchhhHHHHHHhh
Q 033485           56 GQYYCLHCDR------YFAHESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        56 GqfYC~~Cdr------~F~~~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      .+|+|..|++      .+..+..-..|++|+.|+++|+..+
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~  399 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNT  399 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHH
Confidence            3589999999      8999999999999999999998764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=95.63  E-value=0.0049  Score=35.20  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C           31 KPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCcchhCCHHHHHHHHHH
Confidence            348999999999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.54  E-value=0.004  Score=36.77  Aligned_cols=26  Identities=35%  Similarity=0.604  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|..|++.|.+...|..|+++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~   32 (66)
T 2drp_A            7 GEHTYRCKVCSRVYTHISNFCRHYVT   32 (66)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcceECCCCcchhCCHHHHHHHHHH
Confidence            34579999999999999999999864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.53  E-value=0.0069  Score=38.43  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.....|..|+++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh
Confidence            4569999999999999999999865

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=95.52  E-value=0.00082  Score=35.00  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.7

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+.+.|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.49  E-value=0.008  Score=36.00  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=19.1

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~   31 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERI   31 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3457888888888888888888754

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.47  E-value=0.0064  Score=32.12  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CCCccccc--ccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.  .|++.|.+.+.|..|++.
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHH
Confidence            34568999  599999999999999753

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.45  E-value=0.0062  Score=37.14  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|.|..|++.|.+...|..|++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~   28 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQR   28 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHH
Confidence            3456788888888888888888864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.43  E-value=0.007  Score=36.58  Aligned_cols=25  Identities=24%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|++.
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~   36 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRV   36 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHh
Confidence            4568999999999999999999864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.33  E-value=0.0085  Score=34.62  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      +...|-|.+|++.|.+...|..|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH
Confidence            4456999999999999999999975

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.25  E-value=0.0077  Score=36.09  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.+|++.|.+...|..|++.
T Consensus        36 ~~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A           36 RPFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHH
Confidence            359999999999999999999753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.21  E-value=0.0092  Score=34.48  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=19.2

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|.+...|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH
Confidence            47888999999998888888864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.17  E-value=0.011  Score=36.50  Aligned_cols=24  Identities=33%  Similarity=0.583  Sum_probs=20.1

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|+++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKI   84 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH
Confidence            358899999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=95.14  E-value=0.011  Score=36.27  Aligned_cols=24  Identities=29%  Similarity=0.613  Sum_probs=18.8

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|+++
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHHh
Confidence            347888888888888888888764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.11  E-value=0.0086  Score=36.16  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=18.7

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|+++
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHHh
Confidence            347888888888888888888753

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.08  E-value=0.016  Score=36.80  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=32.3

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHHhhC
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMG   91 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~~   91 (118)
                      .-.|..|+.-|...-++..|+=|+.|..+|+.+.+
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            45899999999999999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.07  E-value=0.0094  Score=35.99  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=21.4

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        41 ~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           41 KPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHh
Confidence            359999999999999999999853

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.05  E-value=0.0092  Score=36.11  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|-|..|++.|.+...|..|+++
T Consensus        44 ~~~~C~~C~k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           44 KPYRCNICGAQFNRPANLKTHTRI   67 (74)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCEECCCCCchhCCHHHHHHHHHh
Confidence            459999999999999999999853

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=95.04  E-value=0.0098  Score=33.91  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~   23 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT   23 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh
Confidence            7899999999999999999854

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.00  E-value=0.017  Score=35.14  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=21.2

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|..|++.|.+...|..|++.
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~   40 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRT   40 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHH
Confidence            34568899999999999999999864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=94.97  E-value=0.012  Score=36.92  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=20.2

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.+|++.|.+...|..|++.
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCcCccCCHHHHHHHHHH
Confidence            358899999999999999999753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=94.96  E-value=0.013  Score=33.81  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.9

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..|++.|.+...|..|++
T Consensus        29 ~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           29 KPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            45899999999999999999974

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.92  E-value=0.012  Score=35.92  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             CCcccccccccccCChHHHHHHhc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...|-|..|++.|.+...|..|++
T Consensus        13 ~k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           13 EKPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCeECCCcCchhCCHHHHHHHHH
Confidence            456899999999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=94.87  E-value=0.0089  Score=36.82  Aligned_cols=24  Identities=17%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|-|.+|++.|.+.+.|..|+++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~   26 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRA   26 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHH
Confidence            358999999999999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.86  E-value=0.018  Score=35.98  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=18.3

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .+.|.|..|++.|.+...|..|++.
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~   30 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRC   30 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHh
Confidence            3457788888888888888887753

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.84  E-value=0.016  Score=31.89  Aligned_cols=25  Identities=16%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             CCccccc--ccccccCChHHHHHHhcc
Q 033485           55 MGQYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|.  .|++.|.+...|..|+++
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~~   36 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRRS   36 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            4569998  899999999999999865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.75  E-value=0.017  Score=36.06  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=19.0

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|+++
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH
Confidence            357888888888888888888764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.73  E-value=0.016  Score=37.52  Aligned_cols=29  Identities=17%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             CCCcccccccccccCChHHHHHHhcchhh
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKTKRH   82 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ksK~H   82 (118)
                      +...|.|.+|++.|.+...|..|++...|
T Consensus        77 ~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            44579999999999999999999876544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.67  E-value=0.018  Score=34.98  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|-|.+|++.|.+...|..|++.
T Consensus        45 ~~~~C~~C~~~f~~~~~L~~H~~~   68 (77)
T 2cot_A           45 KPYKCDECGKAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            459999999999999999999864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.62  E-value=0.016  Score=38.03  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=12.6

Q ss_pred             cccccccccccCChHHHHHHh
Q 033485           57 QYYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~   77 (118)
                      .|-|.+|++.|.+...|..|+
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~   48 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHL   48 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHH
T ss_pred             CEECCCCCCCcCcHHHHhhhh
Confidence            455666666666666666655

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.42  E-value=0.019  Score=37.58  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|.|.+|++.|.+...|..|++
T Consensus        53 ~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           53 AAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCCEeCCHHHHHHhCc
Confidence            3446999999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.40  E-value=0.018  Score=34.95  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..|++.|.+...|..|++
T Consensus        37 ~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           37 LRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             cccCCCCCCchhCCHHHHHHHHH
Confidence            45999999999999999999974

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.39  E-value=0.024  Score=38.29  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=21.4

Q ss_pred             CCCCCCcccccccccccCChHHHHHHhc
Q 033485           51 DLPGMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        51 dlpg~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...|...|-|.+|++.|.+...|..|++
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r   39 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVD   39 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHH
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHH
Confidence            4566677888888888888888888864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.37  E-value=0.017  Score=36.01  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=14.7

Q ss_pred             CCcccccccccccCChHHHHHHhc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...|.|..|++.|.+...|..|++
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~   28 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKL   28 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHH
Confidence            345666666666666666666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.32  E-value=0.018  Score=36.97  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|.+|++.|.+...|..|+++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHH
Confidence            3469999999999999999999865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.31  E-value=0.018  Score=37.13  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             CCCcccccccccccC-ChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFA-HESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~-~~~~l~~H~ks   79 (118)
                      +...|.|..|++.|. +...|..|++.
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~   47 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHMEV   47 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHHH
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHHH
Confidence            345789999999999 99999999854

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.29  E-value=0.015  Score=35.42  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=21.6

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCCccCCHHHHHHHHHH
Confidence            469999999999999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.24  E-value=0.023  Score=36.15  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|.+|++.|.+...|..|++
T Consensus        72 ~~~~C~~C~~~f~~~~~L~~H~~   94 (106)
T 2ee8_A           72 KPFKCQECGKGFCQSRTLAVHKT   94 (106)
T ss_dssp             CTTSCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCcCCcccCHHHHHHHHH
Confidence            45889999999999999999974

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.23  E-value=0.023  Score=36.69  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=19.1

Q ss_pred             CCCcccccccccccCChHHHHHHhc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |...|-|..|++.|.+...|..|++
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~   28 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNR   28 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHH
Confidence            4556788888888888888888864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.17  E-value=0.011  Score=33.30  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=21.8

Q ss_pred             CCCccccc--ccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.  .|++.|...+.|..|+++
T Consensus        15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           15 PDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            34579996  799999999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.07  E-value=0.022  Score=34.71  Aligned_cols=24  Identities=42%  Similarity=0.888  Sum_probs=20.0

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.+|++.|.+...|..|++.
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~   37 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKR   37 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHH
Confidence            458899999999999999988753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=94.06  E-value=0.03  Score=35.02  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=24.6

Q ss_pred             CCCCCCCCcccccc--cccccCChHHHHHHhcc
Q 033485           49 DEDLPGMGQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        49 dedlpg~GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ..++.....|.|..  |++.|.+...|..|++.
T Consensus         7 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   39 (100)
T 2ebt_A            7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT   39 (100)
T ss_dssp             CCCCCSCCCEECCSSSCCCEESCHHHHHHHHHH
T ss_pred             CcccccCcceEcCCCCCCCcccCHHHHHHHHHH
Confidence            34556667899997  99999999999999863

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.96  E-value=0.058  Score=35.85  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=25.1

Q ss_pred             CCCCCCCCCcccccc--cccccCChHHHHHHhc
Q 033485           48 FDEDLPGMGQYYCLH--CDRYFAHESVRDEHFK   78 (118)
Q Consensus        48 ~dedlpg~GqfYC~~--Cdr~F~~~~~l~~H~k   78 (118)
                      .+.-..|...|-|.+  |++.|...+.|..|++
T Consensus        18 ~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~r   50 (73)
T 1x3c_A           18 FPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQ   50 (73)
T ss_dssp             CSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHH
T ss_pred             ccccccCCCCeECCCCCcChhHcCHHHHHHHhh
Confidence            344456667899976  9999999999999973

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.93  E-value=0.025  Score=36.33  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CCcccccccccccCChHHHHHHhc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...|.|.+|++.|.+...|..|++
T Consensus        67 ~~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           67 YKKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             TGGGEEGGGTEECSSHHHHHHHHH
T ss_pred             CCCccCccccchhCCHHHHHHHHH
Confidence            346999999999999999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.90  E-value=0.024  Score=35.31  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CcccccccccccCChHHHHHHhcch
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      ..|.|..|++.|.+...|..|++..
T Consensus        30 ~~~~C~~C~k~f~~~~~L~~H~~~h   54 (88)
T 1llm_C           30 KPFACDICGRKFARSDERKRHRDIQ   54 (88)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHh
Confidence            3589999999999999999998653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=93.87  E-value=0.025  Score=34.02  Aligned_cols=24  Identities=25%  Similarity=0.438  Sum_probs=21.3

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A           28 RPYPCQYCGKRFHQKSDMKKHTFI   51 (82)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeeCCcCChhhCCHHHHHHHHHH
Confidence            458999999999999999999853

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=93.85  E-value=0.025  Score=34.75  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..|++.|.+...|..|++
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~   55 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIR   55 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.75  E-value=0.028  Score=34.92  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.5

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..|++.|.+...|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            45899999999999999999975

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.73  E-value=0.022  Score=36.69  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.+|++.|.+...|..|++.
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCEECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999853

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.70  E-value=0.035  Score=32.45  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CCcccccccccccCChHHHHHHhc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...+||..|+..|.+-.+|..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            347899999999999999999963

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=93.69  E-value=0.032  Score=33.34  Aligned_cols=28  Identities=32%  Similarity=0.713  Sum_probs=23.7

Q ss_pred             CCCCCccccc--ccccccCChHHHHHHhcc
Q 033485           52 LPGMGQYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        52 lpg~GqfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      -++...|.|.  .|++.|.+...|..|+++
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   43 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRI   43 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHh
Confidence            4566789997  599999999999999853

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=93.67  E-value=0.042  Score=32.78  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             CCCCCcccccc--cccccCChHHHHHHhcc
Q 033485           52 LPGMGQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        52 lpg~GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      -.....|.|.+  |++.|.+...|..|++.
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~   41 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRT   41 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHH
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHh
Confidence            44567899999  99999999999999853

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.62  E-value=0.035  Score=35.92  Aligned_cols=26  Identities=15%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|..|++.|.+...|..|++.
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCEECCccCchhcCHHHHHHHHHH
Confidence            44579999999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.46  E-value=0.041  Score=35.32  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|.+|++.|.+...|..|++.
T Consensus        13 ~~~~~~C~~C~~~f~~~~~l~~H~~~   38 (107)
T 1wjp_A           13 NKEVYQCRLCNAKLSSLLEQGSHERL   38 (107)
T ss_dssp             CCCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHH
Confidence            34568999999999999999999865

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=93.46  E-value=0.052  Score=34.46  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~   67 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYI   67 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGG
T ss_pred             CCcCCCCccchhCCHHHHHHHHHH
Confidence            358899999999999999998764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.45  E-value=0.036  Score=36.22  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=14.5

Q ss_pred             cccccccccccCChHHHHHH
Q 033485           57 QYYCLHCDRYFAHESVRDEH   76 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H   76 (118)
                      .|-|.+|++.|.+...|..|
T Consensus        62 ~~~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           62 MFTCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             CCCCSSSCCCCSSHHHHHHH
T ss_pred             CeECCCCCCeeCCHHHHHHH
Confidence            46677777777777777777

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=93.44  E-value=0.031  Score=35.92  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=20.1

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..|++.|.+...|..|++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~   87 (119)
T 2jp9_A           65 KPFQCKTCQRKFSRSDHLKTHTR   87 (119)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCccCchhCCHHHHHHHHH
Confidence            45899999999999999999985

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.42  E-value=0.026  Score=33.59  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|. ...|..|+++
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~   31 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH
Confidence            45688999999999 8889888753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.37  E-value=0.036  Score=35.77  Aligned_cols=22  Identities=23%  Similarity=0.558  Sum_probs=12.6

Q ss_pred             cccccccccccCChHHHHHHhc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|.|..|++.|.+...|..|++
T Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           94 PYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCccchhCCHHHHHHHHH
Confidence            3556666666666555555553

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.36  E-value=0.019  Score=34.24  Aligned_cols=25  Identities=16%  Similarity=0.118  Sum_probs=21.9

Q ss_pred             CCccccc-ccccccCChHHHHHHhcc
Q 033485           55 MGQYYCL-HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~-~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|. .|++.|.....|..|++.
T Consensus        34 ~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A           34 RLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             SSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CcCccCCcccCcccccHHHHHHHHHh
Confidence            3469999 999999999999999863

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=93.36  E-value=0.044  Score=32.69  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             Ccccccc--cccccCChHHHHHHhcc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|-|.+  |++.|.+...|..|+++
T Consensus        46 ~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           46 KPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CCccCCCCCCCcccCCHHHHHhHhhc
Confidence            4589975  99999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=93.32  E-value=0.021  Score=39.62  Aligned_cols=26  Identities=27%  Similarity=0.599  Sum_probs=21.6

Q ss_pred             CCCCcccccccccccCChHHHHHHhc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|...|-|.+|++.|.+...|..|++
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~   43 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFN   43 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHH
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHH
Confidence            35567889999999999999999975

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.23  E-value=0.033  Score=34.62  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|.+...|..|+++
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~   25 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT   25 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH
Confidence            58999999999999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.21  E-value=0.03  Score=34.08  Aligned_cols=24  Identities=17%  Similarity=0.546  Sum_probs=21.4

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~   69 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADN   69 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             cceECCCCCChhCCHHHHHHHHHH
Confidence            369999999999999999999853

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.12  E-value=0.027  Score=36.82  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             Cccccccccccc-CChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYF-AHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F-~~~~~l~~H~ks   79 (118)
                      ..|-|..|++.| .+...|..|++.
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~   57 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMEN   57 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHH
Confidence            468999999999 999999999753

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.01  E-value=0.044  Score=35.76  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|-|.+|++.|.....|..|+++
T Consensus        22 ~~kpy~C~~C~k~F~~~~~L~~H~~~   47 (88)
T 1x6f_A           22 QNSTYQCKHCDSKLQSTAELTSHLNI   47 (88)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCEeCCHHHHHHHHHH
Confidence            44579999999999999999999864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=92.80  E-value=0.057  Score=35.10  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|++.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~   56 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLV   56 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            458899999999988888888763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.75  E-value=0.054  Score=34.72  Aligned_cols=22  Identities=41%  Similarity=0.910  Sum_probs=12.8

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.| .|++.|.+...|..|++
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~   30 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMS   30 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHH
T ss_pred             CCEec-cCCCccCCHHHHHHHHH
Confidence            34566 56666666666666654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.74  E-value=0.047  Score=32.83  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             Ccccccc--cccccCChHHHHHHhc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|..  |++.|.+...|..|++
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~   61 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMK   61 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHH
Confidence            3589999  9999999999999986

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.67  E-value=0.045  Score=34.06  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |.|..|++.|.+...|..|+++
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHH
T ss_pred             cCCCCCCcccCCHHHHHHHHHh
Confidence            8899999999999999999853

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.63  E-value=0.046  Score=37.91  Aligned_cols=23  Identities=30%  Similarity=0.730  Sum_probs=17.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|.+...|..|+++
T Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           78 RYQCLACGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             CEEESSSCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCCCcCCHHHHHHHhHH
Confidence            47777788888777777777643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=92.49  E-value=0.065  Score=32.72  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=15.9

Q ss_pred             Ccccccc--cccccCChHHHHHHhc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~k   78 (118)
                      +.|.|..  |++.|.+...|..|++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~   28 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLR   28 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHT
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHH
Confidence            4566777  7777777777777765

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=92.30  E-value=0.067  Score=37.53  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=17.3

Q ss_pred             CcccccccccccCChHHHHHHhcc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..|++.|.+...|..|+++
T Consensus       160 ~~~~C~~C~~~f~~~~~L~~H~~~  183 (190)
T 2i13_A          160 KPYKCPECGKSFSRRDALNVHQRT  183 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHh
Confidence            347777777777777777777754

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=92.22  E-value=0.032  Score=36.94  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|+++
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~   96 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRY   96 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH
Confidence            3568999999999999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=92.21  E-value=0.067  Score=34.31  Aligned_cols=24  Identities=21%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             Ccccc--cccccccCChHHHHHHhcc
Q 033485           56 GQYYC--LHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC--~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|  ..|++.|.+...|..|+++
T Consensus        93 ~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           93 KPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             CCeeCCCCCCccccCCHHHHHHHHhc
Confidence            45899  8999999999999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=92.16  E-value=0.064  Score=32.27  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=20.0

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..  |++.|.+...|..|+++
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~   55 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKV   55 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHH
Confidence            488988  99999999999999853

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.13  E-value=0.11  Score=32.22  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             CCCCCCcccccccccccCChHHHHHHhc
Q 033485           51 DLPGMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        51 dlpg~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      +....+.|-|.-|++.|.-...|..|++
T Consensus         6 ~~~~~~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A            6 SGQDGGRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SSCCSSCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ccccCCceeCCcccccccchHHHHhhhh
Confidence            3444589999999999999999999986

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=91.93  E-value=0.065  Score=35.38  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|..|++.|.+...|..|++.
T Consensus       100 ~~~C~~C~k~f~~~~~l~~H~~~  122 (129)
T 2wbt_A          100 TKVCPVCKKEFTSTDSALDHVCK  122 (129)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            48999999999999999999864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.89  E-value=0.08  Score=31.77  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.7

Q ss_pred             CCCcccccc--cccccCChHHHHHHhc
Q 033485           54 GMGQYYCLH--CDRYFAHESVRDEHFK   78 (118)
Q Consensus        54 g~GqfYC~~--Cdr~F~~~~~l~~H~k   78 (118)
                      |...|.|..  |++.|.+...|..|++
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~   30 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKK   30 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHH
Confidence            345788987  9999999999999986

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.70  E-value=0.068  Score=36.02  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             CCcccccccccccCChHHHHHH-hc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEH-FK   78 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H-~k   78 (118)
                      ...|-|..|++.|.+...|..| ++
T Consensus        48 ekpf~C~~Cgk~F~~~~~L~~H~~r   72 (102)
T 2ghf_A           48 NSSYVCVECNFLTKRYDALSEHNLK   72 (102)
T ss_dssp             SCCEEETTTTEEESSTHHHHTHHHH
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH
Confidence            3459999999999999999999 54

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=90.92  E-value=0.077  Score=37.20  Aligned_cols=27  Identities=33%  Similarity=0.687  Sum_probs=9.2

Q ss_pred             CCCCcccccccccccCChHHHHHHhcc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +|...|.|..|++.|.+...|..|++.
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   43 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRT   43 (190)
T ss_dssp             --------------CCSSHHHHHGGGC
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHH
Confidence            344567777777777777777777653

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.86  E-value=0.12  Score=31.98  Aligned_cols=25  Identities=20%  Similarity=0.107  Sum_probs=21.5

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .-.|-|..|++.|.+...|..|++.
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~   47 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTM   47 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHH
T ss_pred             cCCCcccccccccCCHHHHHHHHHH
Confidence            3457799999999999999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=90.74  E-value=0.14  Score=34.58  Aligned_cols=25  Identities=20%  Similarity=0.107  Sum_probs=21.9

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|.|..|++.|.+...|..|++.
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~   47 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTM   47 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHT
T ss_pred             hcccccccCCcccCCHHHHHHHHHh
Confidence            4578999999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=90.51  E-value=0.11  Score=34.80  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=16.4

Q ss_pred             Ccccccc--cccccCChHHHHHHhcc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..  |++.|.+...|..|+++
T Consensus       127 ~~~~C~~~~C~~~f~~~~~L~~H~~~  152 (155)
T 2gli_A          127 KPYVCKLPGCTKRYTDPSSLRKHVKT  152 (155)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCCCccccCCHHHHHHHHHh
Confidence            4567766  77777777777777653

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=90.11  E-value=0.11  Score=31.23  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             ccc--cccccccCChHHHHHHhcc
Q 033485           58 YYC--LHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC--~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|  ..|++.|.+...|..|+++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~   25 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS   25 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH
Confidence            779  8999999999999999853

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=90.06  E-value=0.18  Score=35.21  Aligned_cols=24  Identities=38%  Similarity=0.593  Sum_probs=17.7

Q ss_pred             Ccccccc--cccccCChHHHHHHhcc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|..  |++.|.+...|..|+++
T Consensus       133 ~~~~C~~~~C~k~F~~~~~L~~H~~~  158 (190)
T 1tf6_A          133 LPYECPHEGCDKRFSLPSRLKRHEKV  158 (190)
T ss_dssp             CSSBCCSSSCCCBCSSHHHHHHHHTS
T ss_pred             CCccCCCCCCCchhcCHHHHHHHHHH
Confidence            3577866  88888888888888753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=88.75  E-value=0.2  Score=33.77  Aligned_cols=24  Identities=38%  Similarity=0.724  Sum_probs=19.1

Q ss_pred             CCcccccc--cccccCChHHHHHHhc
Q 033485           55 MGQYYCLH--CDRYFAHESVRDEHFK   78 (118)
Q Consensus        55 ~GqfYC~~--Cdr~F~~~~~l~~H~k   78 (118)
                      ...|.|.+  |++.|.+...|..|++
T Consensus       118 ~~~~~C~~~~C~k~f~~~~~L~~H~~  143 (155)
T 2rpc_A          118 EKPFKCEFEGCDRRFANSSDRKKHMH  143 (155)
T ss_dssp             SCSBCCSSTTCCCCBSSHHHHHHSST
T ss_pred             CCCccCCCCCCCCccCCHHHHHHHHH
Confidence            34588886  8888888888888875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.13  E-value=0.24  Score=33.22  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=19.8

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|++.|.+...|..|++.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~   25 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINS   25 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHH
T ss_pred             cCCcCCCccccCCHHHHHHHHHh
Confidence            57899999999999999999864

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=87.27  E-value=0.23  Score=36.14  Aligned_cols=25  Identities=20%  Similarity=0.594  Sum_probs=22.4

Q ss_pred             cccccccccCChHHHHHHhcchhhHHHH
Q 033485           59 YCLHCDRYFAHESVRDEHFKTKRHKKRV   86 (118)
Q Consensus        59 YC~~Cdr~F~~~~~l~~H~ksK~HKrrv   86 (118)
                      ||..|-..|.+   |..|+.|..|..-+
T Consensus        89 yCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           89 YCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             EETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             Cccchhhhhhh---HHHHcCCHHHHHHH
Confidence            99999999996   77999999996655

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=87.19  E-value=0.28  Score=31.69  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             Cccccc--ccccccCChHHHHHHhcc
Q 033485           56 GQYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.  .|++.|.+...|..|++.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~   29 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHT   29 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGG
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHH
Confidence            468999  899999999999999864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.07  E-value=0.033  Score=32.73  Aligned_cols=25  Identities=12%  Similarity=0.203  Sum_probs=21.9

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|..|++.|.+...|..|++.
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~   61 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGN   61 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHh
Confidence            4579999999999999999999865

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=86.88  E-value=0.37  Score=33.60  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             CCCcccc--cccccccCChHHHHHHhcc
Q 033485           54 GMGQYYC--LHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC--~~Cdr~F~~~~~l~~H~ks   79 (118)
                      +...|.|  ..|++.|.+...|..|+++
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGG
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHH
Confidence            4456888  8899999999999998764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=85.38  E-value=0.068  Score=31.76  Aligned_cols=20  Identities=15%  Similarity=0.431  Sum_probs=13.1

Q ss_pred             CCcccccccccccCChHHHH
Q 033485           55 MGQYYCLHCDRYFAHESVRD   74 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~   74 (118)
                      ...|.|..|++.|.....|.
T Consensus        12 ~k~~~C~~C~k~F~~~~~l~   31 (62)
T 1vd4_A           12 RASFKCPVCSSTFTDLEANQ   31 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH
T ss_pred             CCCccCCCCCchhccHHHhH
Confidence            34577777777777665553

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=84.91  E-value=0.37  Score=27.52  Aligned_cols=23  Identities=13%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|..|-+.|.+...|..|+..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            49999999999999999999843

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=83.49  E-value=0.31  Score=28.74  Aligned_cols=26  Identities=15%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             CCCCcccccccccccCChHHHHHHhc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|...|.|.+|++.|....++..|..
T Consensus        35 ~~~k~~~C~~C~k~f~~~~~~~~~~~   60 (62)
T 1vd4_A           35 PMTGTFRCTFCHTEVEEDESAMPKKD   60 (62)
T ss_dssp             TTTTEEBCSSSCCBCEECTTCSCCCC
T ss_pred             CCCCCEECCCCCCccccCcccccccc
Confidence            56678999999999998776655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	8e-28
d2vrda1	61	g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human	7e-05

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (236), Expect = 8e-28
 Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 47  PFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGM 106
            FD DLPG G + CL C RYF   +    HF++K HKKR+K+ +  +P++Q +A+ AAGM
Sbjct: 5   EFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGM 63

Query: 107 G 107
           G
Sbjct: 64  G 64

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 7e-05
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
          M ++YC +CD Y  H+  SVR  H   ++HK+ VK+
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	99.97
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	98.72
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.94
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	97.22
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.96
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	96.89
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.86
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	96.81
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	96.79
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.77
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.77
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	96.75
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.66
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.37
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.21
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.17
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.16
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.13
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	96.13
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.99
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.94
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	95.84
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.74
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.47
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.39
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	95.3
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.0
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.68
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.39
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.29
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.92
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.79
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	93.6
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	92.87
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	92.84
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	92.1
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.45
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.0
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.85
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	85.81
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	85.22
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.29
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.21
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	81.35

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-32  Score=178.07  Aligned_cols=64  Identities=45%  Similarity=0.775  Sum_probs=61.3

Q ss_pred             CCCCCCCCCCCCCcccccccccccCChHHHHHHhcchhhHHHHHHhhCCCCCCHHHHHHhcCCCC
Q 033485           44 NPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM  108 (118)
Q Consensus        44 ~~~~~dedlpg~GqfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~~~~pytq~eAe~aag~g~  108 (118)
                      .++++|+|+||+|||||++|+|||+|+++|++|++||+|||||++|+ ++||||+|||+|||||+
T Consensus         2 ~~~e~D~D~pG~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~-~~p~t~~eae~AaG~Gs   65 (67)
T d1zr9a1           2 PNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS-VEPYSQEEAERAAGMGS   65 (67)
T ss_dssp             CSCSSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT-SCSSCTTTSSCSCCCCC
T ss_pred             CCCCCCCCCCCCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhc-cCcCCHHHHHHhcCCcC
Confidence            36899999999999999999999999999999999999999999998 57999999999999996

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.7e-09  Score=65.99  Aligned_cols=36  Identities=42%  Similarity=0.872  Sum_probs=32.0

Q ss_pred             CCcccccccccccCC--hHHHHHHhcchhhHHHHHHhh
Q 033485           55 MGQYYCLHCDRYFAH--ESVRDEHFKTKRHKKRVKEMM   90 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~--~~~l~~H~ksK~HKrrvK~l~   90 (118)
                      |+.|||.+|+.||.+  .++.+.|+.|++|++++++.-
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            468999999999974  478999999999999999874

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.94  E-value=7.7e-06  Score=50.66  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHHh
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM   89 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l   89 (118)
                      ..||..|+.+|.+..+-++|..||.|.++++.-
T Consensus        21 nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            349999999999999999999999999999864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.8e-05  Score=41.77  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.1

Q ss_pred             CCCCcccccccccccCChHHHHHHhcc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|...|.|.+|++.|...+.|..|++.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCccccCCCCCCcccChHHHHHHccc
Confidence            366789999999999999999999864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00018  Score=39.74  Aligned_cols=26  Identities=27%  Similarity=0.639  Sum_probs=23.5

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|.|.+|++.|...+.|..|++.
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccc
Confidence            55689999999999999999999865

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00032  Score=39.22  Aligned_cols=27  Identities=30%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             CCCCcccccccccccCChHHHHHHhcc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|...|-|..|++.|...+.|..|+++
T Consensus         7 TgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           7 TGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            356789999999999999999999864

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0002  Score=38.52  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.+|+|.|...+.|..|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            58899999999999999999976

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0004  Score=38.92  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.2

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|+|.|...++|..|.++
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCcc
Confidence            44579999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00024  Score=39.71  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+|++.|....+|..|++.
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCEeCCCCcccccchHHHHHHccc
Confidence            56789999999999999999999754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0002  Score=38.26  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.3

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.+|+|.|...+.|..|+++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            58999999999999999999875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.77  E-value=0.0003  Score=37.66  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=21.3

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.+|++.|...+.|..|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            58899999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00029  Score=39.22  Aligned_cols=27  Identities=41%  Similarity=0.848  Sum_probs=23.9

Q ss_pred             CCCCcccccccccccCChHHHHHHhcc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|...|-|.+|++.|...+.|..|++.
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            356789999999999999999999864

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00028  Score=37.30  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHhcc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.+|+|.|...+.|..|++.
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            48899999999999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0006  Score=36.72  Aligned_cols=27  Identities=33%  Similarity=0.631  Sum_probs=25.1

Q ss_pred             ccccccccccCChHHHHHHhcchhhHH
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTKRHKK   84 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK~HKr   84 (118)
                      |-|.+|+-.|.+.-+|..|++||.|-+
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            789999999999999999999999853

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00076  Score=36.35  Aligned_cols=23  Identities=17%  Similarity=0.512  Sum_probs=20.9

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.+  |+|.|...+.|..|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            588988  99999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.00083  Score=36.05  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=20.7

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.+  |+|.|...+.|..|+++
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCc
Confidence            588988  99999999999999864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.16  E-value=0.0015  Score=41.81  Aligned_cols=32  Identities=22%  Similarity=0.553  Sum_probs=30.6

Q ss_pred             ccccccccccCChHHHHHHhcchhhHHHHHHh
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM   89 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l   89 (118)
                      -||..|+--.++++...+|..||+|.+.|+.+
T Consensus        33 ~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999876

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0011  Score=35.81  Aligned_cols=23  Identities=13%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|-|.+  |+|.|...+.|..|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            588999  99999999999999864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0012  Score=36.03  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             Ccccccc--cccccCChHHHHHHhcc
Q 033485           56 GQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        56 GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      ..|.|.+  |+|.|...+.|..|+++
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            3589999  99999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0014  Score=37.15  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.9

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|.|.+|++.|....+|..|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            46899999999999999999964

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.00071  Score=36.18  Aligned_cols=23  Identities=30%  Similarity=0.665  Sum_probs=20.8

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.+  |+|.|...++|+.|+++
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            478988  99999999999999875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0024  Score=34.45  Aligned_cols=23  Identities=22%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             ccccc--ccccccCChHHHHHHhcc
Q 033485           57 QYYCL--HCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~--~Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.  .|++.|...+.|..|+++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCc
Confidence            48895  599999999999999976

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0022  Score=37.17  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             CCcccccccccccCChHHHHHHhcc
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      ...|-|.+|++.|...+.|..|+++
T Consensus        28 ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1          28 LRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             ccCCcCCCcCCEecCHHHHHHHHhc
Confidence            3468999999999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0042  Score=32.46  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             ccccccccccCChHHHHHHhcch
Q 033485           58 YYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      +-|.+|++-|.....|+.|.++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            57999999999999999999873

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.39  E-value=0.0038  Score=35.37  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             CCcccccccccccCChHHHHHHhcch
Q 033485           55 MGQYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        55 ~GqfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      ...|.|.+|+|.|.+-.+|-.|.++-
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CCccCCCCCCCccCCcccccchHhhh
Confidence            35799999999999999999998653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0018  Score=37.91  Aligned_cols=26  Identities=23%  Similarity=0.467  Sum_probs=23.0

Q ss_pred             CCCcccccc--cccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|.+  |++.|...++|..|+++
T Consensus        15 gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          15 PDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCCCeECCcCCCCccccCchHHHhhccc
Confidence            456899988  99999999999999865

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.00  E-value=0.0067  Score=33.72  Aligned_cols=23  Identities=26%  Similarity=0.600  Sum_probs=21.3

Q ss_pred             CcccccccccccCChHHHHHHhc
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ..|-|..|+..|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            47999999999999999999974

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0058  Score=32.89  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=22.5

Q ss_pred             cccccccccccCChHHHHHHhcchh
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKR   81 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~   81 (118)
                      .|.|.+|.-.-.++++|++|.++|.
T Consensus         2 py~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             Cccccccccccccchhhhhhhhccc
Confidence            4789999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0067  Score=33.59  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             ccccc--cccccCChHHHHHHhcc
Q 033485           58 YYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      |-|.+  |++.|...+.|..|+++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~   25 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL   25 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCCCeeCChhHhccccCe
Confidence            67887  99999999999999876

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.011  Score=31.33  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             cccccccccccCChHHHHHHhc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .+-|.+|++.|.-.+-|+.|+-
T Consensus         2 ~hvc~ecgkaf~essklkrh~l   23 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQL   23 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGG
T ss_pred             cchHHHHhHHHHHHHHHHHHhh
Confidence            4689999999999999999974

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.92  E-value=0.011  Score=33.18  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             cccccccccccCChHHHHHHh
Q 033485           57 QYYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~   77 (118)
                      .-||..||..|.+-+.|..|.
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHH
Confidence            359999999999999999995

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.024  Score=33.60  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=32.4

Q ss_pred             cccccccccccCChHHHHHHhcchhhHHHHHHhhC
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMG   91 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK~HKrrvK~l~~   91 (118)
                      .--|.+|+.-+.+..+...|.=|+.|..+|++..+
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~   40 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   40 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             cccCcccceeeeeecchHhhhhhHHHHHHHHHHHH
Confidence            56899999999999999999999999999998764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.60  E-value=0.016  Score=30.83  Aligned_cols=22  Identities=36%  Similarity=0.661  Sum_probs=20.0

Q ss_pred             cccccccccccCChHHHHHHhc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|-|..|+|.|..+...+.|.+
T Consensus         3 Pf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHG
T ss_pred             Ccccchhhhhhhcchhhhhhhh
Confidence            5899999999999999999964

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.025  Score=30.03  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             cccccccccccCChHHHHHHhcch
Q 033485           57 QYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      .|-|.+|++.-.-.+.|+.|.++.
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsH   24 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTH   24 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CccccccCcccCCHHHHHHHHHHh
Confidence            478999999999999999999874

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.017  Score=33.10  Aligned_cols=21  Identities=43%  Similarity=0.971  Sum_probs=19.0

Q ss_pred             cccccccccccCChHHHHHHhc
Q 033485           57 QYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|-| .|++.|....+|..|++
T Consensus         3 ~y~C-~Cgk~F~~~~~l~~H~~   23 (53)
T d2csha1           3 LYPC-QCGKSFTHKSQRDRHMS   23 (53)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHH
T ss_pred             CCCC-CCCCeECCHHHhHHHhh
Confidence            5899 59999999999999975

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.037  Score=33.02  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CCCCcccccccccccCChHHHHHHhc
Q 033485           53 PGMGQYYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        53 pg~GqfYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      ...+-|-|-.|+|.|.++.-|.+|..
T Consensus         2 rE~~l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           2 REAGILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             cccceeeccccccccCCHHHHhHhHH
Confidence            34578999999999999999999863

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=92.10  E-value=0.048  Score=28.07  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             ccccccccccCChHHHHHHhcc
Q 033485           58 YYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |.|-.|.|.|...++|..|.+-
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            5799999999999999999864

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.035  Score=29.70  Aligned_cols=23  Identities=30%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             cccccc--cccccCChHHHHHHhcc
Q 033485           57 QYYCLH--CDRYFAHESVRDEHFKT   79 (118)
Q Consensus        57 qfYC~~--Cdr~F~~~~~l~~H~ks   79 (118)
                      .|.|.+  |++.+.+.++|..|+++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            478887  99999999999999875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.074  Score=29.25  Aligned_cols=25  Identities=20%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             CcccccccccccCChHHHHHHhcch
Q 033485           56 GQYYCLHCDRYFAHESVRDEHFKTK   80 (118)
Q Consensus        56 GqfYC~~Cdr~F~~~~~l~~H~ksK   80 (118)
                      .+.-|..|++-|.+.-.|+.|.-|.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklsh   28 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSH   28 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGS
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhccc
Confidence            3678999999999999999997653

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=0.12  Score=28.31  Aligned_cols=21  Identities=24%  Similarity=0.743  Sum_probs=19.8

Q ss_pred             cccccccccccCChHHHHHHh
Q 033485           57 QYYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~   77 (118)
                      -|-|++|=||+.++..|..|+
T Consensus         7 LyiCEfCLKYmks~~~l~RH~   27 (33)
T d1m36a_           7 LYLCEFCLKYMKSRTILQQHM   27 (33)
T ss_dssp             CEECSSSCCEESCHHHHHHHH
T ss_pred             eeeehhhhhhhCCHHHHHHHH
Confidence            588999999999999999997

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.81  E-value=0.19  Score=26.05  Aligned_cols=20  Identities=20%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             cccccccccCChHHHHHHhc
Q 033485           59 YCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        59 YC~~Cdr~F~~~~~l~~H~k   78 (118)
                      .|..|++.|.+.--|+.|.+
T Consensus         2 qcp~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccc
Confidence            49999999999999988864

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=0.21  Score=28.63  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.1

Q ss_pred             CCCcccccccccccCChHHHHHHhcc
Q 033485           54 GMGQYYCLHCDRYFAHESVRDEHFKT   79 (118)
Q Consensus        54 g~GqfYC~~Cdr~F~~~~~l~~H~ks   79 (118)
                      |...|-|..|++.|.-..+|..|..+
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            67789999999999999999999843

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.29  E-value=0.27  Score=25.86  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=17.7

Q ss_pred             cccc--ccccccCChHHHHHHhc
Q 033485           58 YYCL--HCDRYFAHESVRDEHFK   78 (118)
Q Consensus        58 fYC~--~Cdr~F~~~~~l~~H~k   78 (118)
                      |-|.  -||+.|.+.+-|+.|.+
T Consensus         4 y~c~hegcdk~fs~ps~lkrhek   26 (29)
T d2j7ja2           4 YECPHEGCDKRFSLPSRLKRHEK   26 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHH
T ss_pred             ccCCccCccccccCHHHHhhhhh
Confidence            5564  49999999999999975

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.21  E-value=0.33  Score=24.75  Aligned_cols=21  Identities=24%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             cccccccccccCChHHHHHHh
Q 033485           57 QYYCLHCDRYFAHESVRDEHF   77 (118)
Q Consensus        57 qfYC~~Cdr~F~~~~~l~~H~   77 (118)
                      .|.|..|...|.....|++|.
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            378999999999999999997

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=81.35  E-value=0.36  Score=25.84  Aligned_cols=21  Identities=29%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             ccccccccccCChHHHHHHhc
Q 033485           58 YYCLHCDRYFAHESVRDEHFK   78 (118)
Q Consensus        58 fYC~~Cdr~F~~~~~l~~H~k   78 (118)
                      |-|..|+|-|.....|-.|..
T Consensus         2 f~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           2 YPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             EECTTTCCEESSHHHHHHHHT
T ss_pred             cccccccchhhHHHHHHHHHH
Confidence            789999999999999988863