Citrus Sinensis ID: 033492

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHEHHHHHHHHHHHcccccccEEcccEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEcEEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHccccccc
Coil and Loop (DISEMBL)
MNQRFCCLIVLFLSVvpllaagdrkgalvggwkpiedpkekhvMEIGQFAVTEYNKQsksalkfesvekgetqvvsgtNYRLILVvkdgpstkkFEAVVWEkpwehfksltsfkpmvk
Flexible Loop (DISEMBL)
MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALkfesvekgetqvvsgtnyrlilvvkdgpstKKFEAVVWEkpwehfksltsfkpmvk
Low Complexity Region (SEG)
MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK
Disordered region (IsUnstruct)
***RFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYN***************ETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSL********
Disordered Region (DISOPRED)
***RFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMV*
Disordered Region (DISEMBL)
MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK
Disordered Region (DISPRO)
*NQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q6TPK4	116	Cysteine proteinase inhib	N/A	no	0.788	0.801	0.526	7e-26
Q41916	122	Cysteine proteinase inhib	yes	no	0.754	0.729	0.588	2e-25
Q10J94	123	Cysteine proteinase inhib	yes	no	0.805	0.772	0.453	9e-18
P31726	135	Cystatin-1 OS=Zea mays GN	N/A	no	0.822	0.718	0.448	1e-17
P09229	140	Cysteine proteinase inhib	no	no	0.771	0.65	0.439	7e-17
Q84WT8	117	Cysteine proteinase inhib	no	no	0.711	0.717	0.482	2e-13
Q41906	125	Cysteine proteinase inhib	no	no	0.771	0.728	0.413	6e-13
Q8H0X6	234	Cysteine proteinase inhib	no	no	0.974	0.491	0.373	1e-12
Q945Q1	101	Cysteine proteinase inhib	no	no	0.813	0.950	0.371	2e-12
Q06445	97	Cysteine proteinase inhib	N/A	no	0.745	0.907	0.415	7e-12

>sp|Q6TPK4|CYT1_ACTDE Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%)

Query: 22  GDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYR 81
           G RK    GGW+PIE      V ++ QFAV+E+NKQ+   L+++SV +G TQVV+GTNYR
Sbjct: 22  GGRKLVAAGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYR 81

Query: 82  LILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
           L++  KDG     +EAVVW+KPW HF++LTSF+
Sbjct: 82  LVIAAKDGAVVGNYEAVVWDKPWMHFRNLTSFR 114

Specific inhibitor of papain family cysteine proteinases. Inhibits papain, chymopapain, bromelain, ficin, human cathepsins B, H and L, actinidain and house dustmite endopeptidase 1, but does not inhibit human bleomycin hydrolase. Inhibits papain with an IC(50) of 2.47 nM. Does not inhibit cysteine proteinases belonging to other families including clostripain, streptopain and calpain.
Actinidia deliciosa (taxid: 3627)

>sp|Q41916|CYT5_ARATH Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%), Gaps = 1/90 (1%)

Query: 27  ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVV 86
           A VGGW PI +  +  V+EIG+FAV+EYNK+S+S LKFE+V  GETQVVSGTNYRL +  
Sbjct: 26  ARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAA 85

Query: 87  KDGPS-TKKFEAVVWEKPWEHFKSLTSFKP 115
            DG   +K + A+VW+KPW  F++LTSF+P
Sbjct: 86  NDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10J94|CYT8_ORYSJ Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 21  AGDR-KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTN 79
            G+R  G LVGGW PI D  + H+ E+G +AV  +   S   L+F  V  GE QVVSG N
Sbjct: 23  GGNRGHGPLVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMN 82

Query: 80  YRLILVVKD-GPSTKKFEAVVWEKPWEHFKSLTSFKP 115
           YRL++   D   +T  + AVV+E+ W + + LTSFKP
Sbjct: 83  YRLVVSASDPAGATASYVAVVYEQSWTNTRQLTSFKP 119

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P31726|CYT1_MAIZE Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 20  AAGDRKGALVGGWKPI-EDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGT 78
           +  D  G L GG K +  +  +  + E+ +FAV E+N+++ + L FE + K +TQVV+GT
Sbjct: 32  SVADNAGMLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGT 91

Query: 79  NYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
            Y L + VKDG   K +EA VWEKPWE+FK L  FKP+
Sbjct: 92  MYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPV 129

Zea mays (taxid: 4577)

>sp|P09229|CYT1_ORYSJ Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 63/91 (69%)

Query: 26  GALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
           G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   + QVV+GT Y   + 
Sbjct: 44  GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 103

Query: 86  VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
           VK+G + K +EA VWEKPW  FK L  FKP+
Sbjct: 104 VKEGDAKKLYEAKVWEKPWMDFKELQEFKPV 134

There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84WT8|CYT4_ARATH Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana GN=CYS4 PE=3 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 33  KPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPS- 91
           KPI++  +  V+ + ++A+ E+NK+SK  L F  V +G TQVVSGT Y L +  KDG   
Sbjct: 33  KPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGK 92

Query: 92  TKKFEAVVWEKPWEHFKSLTSFKPM 116
            K +EAVV EK W H KSL SFK +
Sbjct: 93  IKNYEAVVVEKLWLHSKSLESFKAL 117

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41906|CYT3_ARATH Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 25  KGALVGGWKPIEDPKEKHVME-IGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
           K  ++GG   +   +    +E + +FA+ E+NKQ    L+F+ + K   QVV+GT Y L 
Sbjct: 31  KTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLT 90

Query: 84  LVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
           L  K+G  TK FEA VW KPW +FK L  FK 
Sbjct: 91  LEAKEGDQTKNFEAKVWVKPWMNFKQLQEFKE 122

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0X6|CYT6_ARATH Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 1   MNQRFCCLIVLF---LSVVPLLAAG----DRKGALVGGWKPI-EDPKEKHVMEIGQFAVT 52
           M  RF   IV F   L +  L+A+     + + ALVGG   +  +     V  + +FAV 
Sbjct: 2   MRSRFLLFIVFFSLSLFISSLIASDLGFCNEEMALVGGVGDVPANQNSGEVESLARFAVD 61

Query: 53  EYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTS 112
           E+NK+  + L+F  V K + QVV+GT + L L + +    K +EA VW KPW +FK L  
Sbjct: 62  EHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQE 121

Query: 113 FKP 115
           FKP
Sbjct: 122 FKP 124

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945Q1|CYT1_ARATH Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 21  AGDRKGALVGGWKPIE-DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTN 79
           A  + G +VGG + I+ +  +  V  + +FAV E+NK     L+++ +   +TQVV+GT 
Sbjct: 2   ADQQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTM 61

Query: 80  YRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
           + L + V DG + K +EA V EK WE+ K L SF  +
Sbjct: 62  HHLTVEVADGETNKVYEAKVLEKAWENLKQLESFNHL 98

Involved in suppression of hypersensitive cell death activated by either avirulent pathogen or oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06445|CYTI_VIGUN Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 27  ALVGGWKPIEDPKEK-HVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
           A +GG + +   +    +  + +FAV E+NK+  + L+F  V   + QVVSGT Y + L 
Sbjct: 2   AALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLE 61

Query: 86  VKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
            KDG   K +EA VWEKPW +FK L  FK
Sbjct: 62  AKDGGQKKVYEAKVWEKPWLNFKELQEFK 90

Vigna unguiculata (taxid: 3917)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
11596186	118	cystatin-like protein [Citrus x paradisi	1.0	1.0	1.0	2e-62
357447931	117	Cysteine proteinase inhibitor [Medicago	0.940	0.948	0.612	4e-31
388510172	117	unknown [Medicago truncatula]	0.940	0.948	0.612	4e-31
449527163	118	PREDICTED: cysteine proteinase inhibitor	0.822	0.822	0.632	3e-28
300432981	120	phytocystatin 5-3 [Brassica rapa subsp.	0.949	0.933	0.528	2e-26
297741794	146	unnamed protein product [Vitis vinifera]	0.762	0.616	0.622	2e-26
359495539	118	PREDICTED: cysteine proteinase inhibitor	0.762	0.762	0.622	4e-26
147854421	118	hypothetical protein VITISV_013491 [Viti	0.762	0.762	0.622	5e-26
300432979	120	phytocystatin 5-2 [Brassica rapa subsp.	0.949	0.933	0.504	6e-26
224086460	113	predicted protein [Populus trichocarpa]	0.737	0.769	0.636	1e-25

>gi|11596186|gb|AAG38521.1|AF283536_1 cystatin-like protein [Citrus x paradisi]

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS 60
           MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS
Sbjct: 1   MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS 60

Query: 61  ALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK 118
           ALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK
Sbjct: 61  ALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMVK 118

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447931|ref|XP_003594241.1| Cysteine proteinase inhibitor [Medicago truncatula] gi|355483289|gb|AES64492.1| Cysteine proteinase inhibitor [Medicago truncatula]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 81/111 (72%)

Query: 6   CCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE 65
             + VLFLSVV +    D K ALVGGW PI++ K+  V+EI +FAVTEY KQS S L F 
Sbjct: 6   VAIFVLFLSVVSVFTVSDGKDALVGGWTPIKNVKDPQVVEIAKFAVTEYGKQSGSKLSFV 65

Query: 66  SVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
            V KGETQVVSGTNYRL+L  K   +TK +EA+VWEKPW H K+LTSFKP+
Sbjct: 66  KVIKGETQVVSGTNYRLVLAAKVVSATKNYEALVWEKPWLHLKNLTSFKPV 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510172|gb|AFK43152.1| unknown [Medicago truncatula]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 81/111 (72%)

Query: 6   CCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE 65
             + VLFLSVV +    D K ALVGGW PI++ K+  V+EI +FAVTEY KQS S L F 
Sbjct: 6   VAIFVLFLSVVSVFTVSDGKDALVGGWTPIKNVKDPQVVEIAKFAVTEYGKQSGSKLSFV 65

Query: 66  SVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
            V KGETQVVSGTNYRL+L  K   +TK +EA+VWEKPW H K+LTSFKP+
Sbjct: 66  KVIKGETQVVSGTNYRLVLAAKVVSATKNYEALVWEKPWLHLKNLTSFKPV 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527163|ref|XP_004170582.1| PREDICTED: cysteine proteinase inhibitor 5-like [Cucumis sativus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 21  AGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS-ALKFESVEKGETQVVSGTN 79
           A  RKG+++GGW  I D K+ HV EIG+FAV EYNKQSK  A++F+SV  GETQVV+GTN
Sbjct: 21  AAARKGSMLGGWSKIPDLKDPHVEEIGKFAVAEYNKQSKGVAIEFKSVVSGETQVVAGTN 80

Query: 80  YRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKPMV 117
           YRL++  K G S  K+EA+VWEKPWE+FK LTSFKP+ 
Sbjct: 81  YRLLIDAKRGESMSKYEAIVWEKPWENFKKLTSFKPVA 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432981|gb|ADK13078.1| phytocystatin 5-3 [Brassica rapa subsp. pekinensis]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 82/121 (67%), Gaps = 9/121 (7%)

Query: 1   MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS 60
           MN +     +LFL++V L +    + AL GGW PI D K  H++EIG+FAV+EYNKQSKS
Sbjct: 1   MNNK--TTFILFLALV-LCSLYVSQAALTGGWSPISDVKNAHIVEIGEFAVSEYNKQSKS 57

Query: 61  ALKFESVEKGETQVVSGTNYRLILVVKDGPS------TKKFEAVVWEKPWEHFKSLTSFK 114
            LKF  V  GE+Q+V+G NYRLIL   +G +      +KK+EAVVWEKPW    +LTSFK
Sbjct: 58  GLKFVEVVSGESQIVAGMNYRLILAANEGVAIAGNGESKKYEAVVWEKPWLKSMNLTSFK 117

Query: 115 P 115
           P
Sbjct: 118 P 118

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741794|emb|CBI33099.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 72/90 (80%)

Query: 24  RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
           R  AL GGW+PI++  +  V EIG+FAVTE+NKQ+  +LKF+SV  GETQVVSGTNYRL+
Sbjct: 54  RTEALAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYRLV 113

Query: 84  LVVKDGPSTKKFEAVVWEKPWEHFKSLTSF 113
           +V +DG  + K+EAVVWEKPW  F++LTSF
Sbjct: 114 VVAEDGGVSNKYEAVVWEKPWMGFRNLTSF 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495539|ref|XP_003635016.1| PREDICTED: cysteine proteinase inhibitor 1-like [Vitis vinifera]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 72/90 (80%)

Query: 24  RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
           R  AL GGW+PI++  +  V EIG+FAVTE+NKQ+  +LKF+SV  GETQVVSGTNYRL+
Sbjct: 26  RTEALAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYRLV 85

Query: 84  LVVKDGPSTKKFEAVVWEKPWEHFKSLTSF 113
           +V +DG  + K+EAVVWEKPW  F++LTSF
Sbjct: 86  VVAEDGGVSNKYEAVVWEKPWMGFRNLTSF 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854421|emb|CAN82794.1| hypothetical protein VITISV_013491 [Vitis vinifera]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 72/90 (80%)

Query: 24  RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
           R  AL GGW+PI++  +  V EIG+FAVTE+NKQ+  +LKF+SV  GETQVVSGTNYRL+
Sbjct: 26  RTEALAGGWRPIKNISDPXVQEIGEFAVTEHNKQAXESLKFQSVVSGETQVVSGTNYRLV 85

Query: 84  LVVKDGPSTKKFEAVVWEKPWEHFKSLTSF 113
           +V +DG  + K+EAVVWEKPW  F++LTSF
Sbjct: 86  VVAEDGGVSNKYEAVVWEKPWMGFRNLTSF 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432979|gb|ADK13077.1| phytocystatin 5-2 [Brassica rapa subsp. pekinensis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 80/121 (66%), Gaps = 9/121 (7%)

Query: 1   MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS 60
           MN +   ++ L L++  L  +   + A  GGW PI D K  H++EIG+FAV+EYNKQSKS
Sbjct: 1   MNNKTTFIVFLSLALCSLYVS---QAARTGGWSPISDVKSAHIVEIGEFAVSEYNKQSKS 57

Query: 61  ALKFESVEKGETQVVSGTNYRLILVVKDGPS------TKKFEAVVWEKPWEHFKSLTSFK 114
            LKF  V  GE+Q+V+G NYRLIL   +G +      +KK+EAVVWEKPW    +LTSFK
Sbjct: 58  GLKFVEVVSGESQIVAGMNYRLILAANEGVAIAGNGESKKYEAVVWEKPWLKSMNLTSFK 117

Query: 115 P 115
           P
Sbjct: 118 P 118

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086460|ref|XP_002307893.1| predicted protein [Populus trichocarpa] gi|222853869|gb|EEE91416.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 73/88 (82%), Gaps = 1/88 (1%)

Query: 28  LVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVK 87
           L+GGW PI+D K+KHV+EI +FAV E+NK++KS L  ES+ KGE+QVVSGTNYRL+L VK
Sbjct: 24  LLGGWSPIKDLKDKHVVEIAEFAVAEHNKEAKSNLMLESIVKGESQVVSGTNYRLVLAVK 83

Query: 88  DGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
            G +   ++AVV+EKPWE+ KSLTSF+P
Sbjct: 84  -GRANATYQAVVYEKPWENLKSLTSFQP 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.915	0.885	0.526	1.9e-26
UNIPROTKB|Q6TPK4	116	Q6TPK4 "Cysteine proteinase in	0.889	0.905	0.509	1.4e-25
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.923	0.931	0.446	3.2e-17
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.762	0.72	0.417	6.9e-15
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	0.974	0.491	0.390	3e-14
TAIR|locus:2177063	101	CYS1 "cystatin-1" [Arabidopsis	0.788	0.920	0.382	1.5e-12
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.652	0.331	0.415	4.5e-11
UNIPROTKB|P01035	148	CST3 "Cystatin-C" [Bos taurus	0.898	0.716	0.384	4.2e-08
RGD|1310978	158	Cst5 "cystatin D" [Rattus norv	0.711	0.531	0.306	1.5e-06
TAIR|locus:2045537	147	CYS2 "PHYTOCYSTATIN 2" [Arabid	0.593	0.476	0.383	3.4e-06

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 59/112 (52%), Positives = 80/112 (71%)

Query:     5 FCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKF 64
             F  L+ L + ++PL A+     A VGGW PI +  +  V+EIG+FAV+EYNK+S+S LKF
Sbjct:     7 FLLLLSLVVVLLPLYASA---AARVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKF 63

Query:    65 ESVEKGETQVVSGTNYRLILVVKDGPS-TKKFEAVVWEKPWEHFKSLTSFKP 115
             E+V  GETQVVSGTNYRL +   DG   +K + A+VW+KPW  F++LTSF+P
Sbjct:    64 ETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEP 115

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

UNIPROTKB|Q6TPK4 Q6TPK4 "Cysteine proteinase inhibitor 1" [Actinidia deliciosa (taxid:3627)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 55/108 (50%), Positives = 77/108 (71%)

Query:     9 IVLFLSVVPLLAA--GDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFES 66
             ++LFL ++ L AA  G RK    GGW+PIE      V ++ QFAV+E+NKQ+   L+++S
Sbjct:     8 LLLFL-LLALSAAVVGGRKLVAAGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQS 66

Query:    67 VEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
             V +G TQVV+GTNYRL++  KDG     +EAVVW+KPW HF++LTSF+
Sbjct:    67 VVRGYTQVVAGTNYRLVIAAKDGAVVGNYEAVVWDKPWMHFRNLTSFR 114

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 50/112 (44%), Positives = 69/112 (61%)

Query:     8 LIVLFLSVVPLLAA--GDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE 65
             LI L L ++PL++   G   G  +G  KPI++  +  V+ + ++A+ E+NK+SK  L F 
Sbjct:     6 LICLSLILLPLVSVVEGLGGGGGLGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFV 65

Query:    66 SVEKGETQVVSGTNYRLILVVKDGPST-KKFEAVVWEKPWEHFKSLTSFKPM 116
              V +G TQVVSGT Y L +  KDG    K +EAVV EK W H KSL SFK +
Sbjct:    66 KVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESFKAL 117

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 38/91 (41%), Positives = 53/91 (58%)

Query:    25 KGALVGGWKPIEDPKEKHVME-IGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
             K  ++GG   +   +    +E + +FA+ E+NKQ    L+F+ + K   QVV+GT Y L 
Sbjct:    31 KTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLT 90

Query:    84 LVVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
             L  K+G  TK FEA VW KPW +FK L  FK
Sbjct:    91 LEAKEGDQTKNFEAKVWVKPWMNFKQLQEFK 121

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 48/123 (39%), Positives = 66/123 (53%)

Query:     1 MNQRFCCLIVLF-LSV-VPLLAAGD-----RKGALVGGWKPIE-DPKEKHVMEIGQFAVT 52
             M  RF   IV F LS+ +  L A D      + ALVGG   +  +     V  + +FAV 
Sbjct:     2 MRSRFLLFIVFFSLSLFISSLIASDLGFCNEEMALVGGVGDVPANQNSGEVESLARFAVD 61

Query:    53 EYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTS 112
             E+NK+  + L+F  V K + QVV+GT + L L + +    K +EA VW KPW +FK L  
Sbjct:    62 EHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQE 121

Query:   113 FKP 115
             FKP
Sbjct:   122 FKP 124

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2177063 CYS1 "cystatin-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 36/94 (38%), Positives = 56/94 (59%)

Query:    21 AGDRKGALVGGWKPIE-DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTN 79
             A  + G +VGG + I+ +  +  V  + +FAV E+NK     L+++ +   +TQVV+GT 
Sbjct:     2 ADQQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTM 61

Query:    80 YRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSF 113
             + L + V DG + K +EA V EK WE+ K L SF
Sbjct:    62 HHLTVEVADGETNKVYEAKVLEKAWENLKQLESF 95

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query:    41 KHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVW 100
             K + +I  FAV E+N++  + L+   V K   QVV+G  YRL L V +    K +EA VW
Sbjct:    59 KEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVW 118

Query:   101 EKPWEHFKSLTSFKPMV 117
              KPW +FK L  FK ++
Sbjct:   119 VKPWMNFKQLQEFKNII 135

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

UNIPROTKB|P01035 CST3 "Cystatin-C" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 45/117 (38%), Positives = 60/117 (51%)

Query:     9 IVLFLSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVE 68
             + L L+V P  A G RKG L+GG     D  E+ V E   FAV+E+NK+S  A +   V 
Sbjct:    19 LALALAVSPAAAQGPRKGRLLGGLMEA-DVNEEGVQEALSFAVSEFNKRSNDAYQSRVVR 77

Query:    69 --KGETQVVSGTNYRLILVVKDGPST-KKFEAVVWEKPWE---HFK--SLTSFKPMV 117
               +   QVVSG NY   L V+ G +T  K +A +   P+    H K   L SF+  V
Sbjct:    78 VVRARKQVVSGMNY--FLDVELGRTTCTKSQANLDSCPFHNQPHLKREKLCSFQVYV 132

GO:0005576 "extracellular region" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

RGD|1310978 Cst5 "cystatin D" [Rattus norvegicus (taxid:10116)]

 Score = 87 (35.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%)

Query:     9 IVLFLSVVPLLAAGDR-KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESV 67
             + L L+V P  +   + K   VGG +P  DP +K V ++  FAV  YN  +        +
Sbjct:    27 LTLALTVNPAASTNAKGKQVAVGGVEPA-DPNDKEVQKVINFAVKTYNDMNNDLYLSRPI 85

Query:    68 E--KGETQVVSGTNYRLILVVKDGPSTK 93
                    QVVSG N+ L + +     TK
Sbjct:    86 RVMSASQQVVSGKNFYLKIELGQTMCTK 113

GO:0002062 "chondrocyte differentiation" evidence=IEA;ISO

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISO

GO:0005576 "extracellular region" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0048469 "cell maturation" evidence=IEA;ISO

TAIR|locus:2045537 CYS2 "PHYTOCYSTATIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query:    46 IGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRL-ILVVKDGPSTKKFEAVVWEKPW 104
             IG  A T+      + L+F  V   + QVV+G  Y L I V +   ST+ F++VV  +PW
Sbjct:    73 IGSIAKTD--TAISNPLQFSRVVSAQKQVVAGLKYYLRIEVTQPNGSTRMFDSVVVIQPW 130

Query:   105 EHFKSLTSFKPMV 117
              H K L  F P+V
Sbjct:   131 LHSKQLLGFTPVV 143

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41916	CYT5_ARATH	No assigned EC number	0.5888	0.7542	0.7295	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013094001 SubName- Full=Chromosome undetermined scaffold_435, whole genome shotgun sequence; Flags- Fragment; (140 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
smart00043	107	smart00043, CY, Cystatin-like domain	1e-16
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	8e-16
pfam00031	92	pfam00031, Cystatin, Cystatin domain	3e-11

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 69.4 bits (170), Expect = 1e-16
 Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 27  ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE--SVEKGETQVVSGTNYRLIL 84
             +GG   +  P +  V E   FAV EYNK+S    +     V   ++QVV+GTNY L +
Sbjct: 1   LCLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKV 59

Query: 85  VVKDGPSTKK----------------FEAVVWEKPWEHFKSLTSFKP 115
            V +    K                   A VWEKPWE+   L  FK 
Sbjct: 60  EVGETNCKKLSVDLENCPFLDQGEKFCTAKVWEKPWENKIKLVEFKC 106

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 67.1 bits (164), Expect = 8e-16
 Identities = 39/106 (36%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 30  GGWKPIEDPKEKHVMEIGQFAVTEYNKQS-KSALKFESVEKGETQVVSGTNYRLILVVKD 88
           GG   I    +  V E+  FAV EYNK+S    L+F  V   ++QVV+GTNY + +   D
Sbjct: 1   GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGD 59

Query: 89  GPSTKK-------------------FEAVVWEKPWEHFKSLTSFKP 115
               K                      A VWEKPWE+FK L SFK 
Sbjct: 60  TNCKKSSVPLDCPDCKLLEEGKKKFCTAKVWEKPWENFKELLSFKC 105

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 55.0 bits (133), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 30  GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSA-LKFESVEKGETQVVSGTNYRLILVVKD 88
           GG  P  +  +  V E   FA+ +YN +S +   +   V + ++QVV+G NY + + V +
Sbjct: 1   GGLSPA-NDNDPEVQEALDFALAKYNAKSNNYYFELVEVLRAKSQVVAGMNYYIKVEVGE 59

Query: 89  GPSTKK---FEAVVW-EKPWEHFKSLTSFK 114
              +K     E     ++  E F     FK
Sbjct: 60  TNCSKSKKDLEDCPLLDEKQEGFCKAQVFK 89

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
cd00042	105	CY Substituted updates: Jan 30, 2002	99.89
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.88
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.85
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.6
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.09
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	98.72
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	96.29
TIGR01572	265	A_thl_para_3677 Arabidopsis paralogous family TIGR	90.93
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	88.7

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.89  E-value=1.5e-22  Score=133.56  Aligned_cols=84  Identities=46%  Similarity=0.727  Sum_probs=78.2

Q ss_pred             ceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCC-eEEEEEEEEEEEEeceEEEEEEEEEEeCC------------------
Q 033492           30 GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSA-LKFESVEKGETQVVSGTNYRLILVVKDGP------------------   90 (118)
Q Consensus        30 GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~-~~~~~V~~a~~QVVaG~nY~l~v~~~~~~------------------   90 (118)
                      |||.++ +.+||++++++++|+.+||+++++. |.+.+|+++++|||+|++|++++++.+++                  
T Consensus         1 gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~~   79 (105)
T cd00042           1 GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLEE   79 (105)
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCccccccccccccc
Confidence            899995 8999999999999999999999988 77899999999999999999999999863                  


Q ss_pred             -CceeEEEEEEEecCCCceEEEEee
Q 033492           91 -STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 -~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                       ....|.+.||.+||.+..++++++
T Consensus        80 ~~~~~C~~~V~~~pw~~~~~l~~~~  104 (105)
T cd00042          80 GKKKFCTAKVWEKPWENFKELLSFK  104 (105)
T ss_pred             CCCEEEEEEEEecCCCCceeeeecc
Confidence             578999999999999999999875

>smart00043 CY Cystatin-like domain

Probab=99.88  E-value=1.4e-22  Score=134.34  Aligned_cols=86  Identities=41%  Similarity=0.628  Sum_probs=78.5

Q ss_pred             ccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeE--EEEEEEEEEEEeceEEEEEEEEEEeCC-Cc------------
Q 033492           28 LVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALK--FESVEKGETQVVSGTNYRLILVVKDGP-ST------------   92 (118)
Q Consensus        28 ~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~-~~------------   92 (118)
                      ++|||.++ +.+||++++++++|+++||+++++.|.  +.+++++++|||+|++|++++++.+++ +.            
T Consensus         2 ~~Gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~~   80 (107)
T smart00043        2 CLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFLD   80 (107)
T ss_pred             CCCCCccC-CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCCC
Confidence            68999995 899999999999999999999998887  689999999999999999999999876 11            


Q ss_pred             ---eeEEEEEEEecCCCceEEEEee
Q 033492           93 ---KKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        93 ---~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                         ..|.++||.+||+++.++++|+
T Consensus        81 ~~~~~C~~~V~~~pw~~~~~~~~~~  105 (107)
T smart00043       81 QGEKFCTAKVWEKPWENKIKLVEFK  105 (107)
T ss_pred             CCccEEEEEEEecCCCCccCcccee
Confidence               4899999999999999998875

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.85  E-value=1.1e-20  Score=122.32  Aligned_cols=74  Identities=41%  Similarity=0.687  Sum_probs=67.6

Q ss_pred             ceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEEEEEEeceEEEEEEEEEEeCC-----------------
Q 033492           30 GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSAL--KFESVEKGETQVVSGTNYRLILVVKDGP-----------------   90 (118)
Q Consensus        30 GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------------   90 (118)
                      |||+++ +++||++++++++|+.+||+++++.+  .+.+|++|++|||+|++|+|++++.+++                 
T Consensus         1 Gg~~~~-~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~~   79 (94)
T PF00031_consen    1 GGPSPV-DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEEQ   79 (94)
T ss_dssp             SSEEEE-CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBESTT
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCccccC
Confidence            899995 88999999999999999999996665  5699999999999999999999998862                 


Q ss_pred             -CceeEEEEEEEecC
Q 033492           91 -STKKFEAVVWEKPW  104 (118)
Q Consensus        91 -~~~~c~~~V~~~PW  104 (118)
                       ....|.++||.+||
T Consensus        80 ~~~~~C~~~v~~~pW   94 (94)
T PF00031_consen   80 PWTKFCKFTVWERPW   94 (94)
T ss_dssp             SSEEEEEEEEEEECG
T ss_pred             CceeeEEEEEEECCC
Confidence             56799999999999

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.60  E-value=9.1e-15  Score=105.50  Aligned_cols=86  Identities=38%  Similarity=0.566  Sum_probs=76.2

Q ss_pred             CCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEec--eEEEEEEEEEEeC-CCceeEEEEEEE
Q 033492           25 KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVS--GTNYRLILVVKDG-PSTKKFEAVVWE  101 (118)
Q Consensus        25 ~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVa--G~nY~l~v~~~~~-~~~~~c~~~V~~  101 (118)
                      ..+...+|.+|.|+++|.+|++++||+.++| +.+++++|.+|.+++.|-++  |++|+|.+.+.+. ++...|++.||+
T Consensus       110 ~~p~~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~  188 (202)
T PF07430_consen  110 ATPQSKKWIPIPNINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWE  188 (202)
T ss_pred             cCcccCCCEECCCCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEE
Confidence            4566789999999999999999999999999 67899999999999999885  6999999999998 688999999999


Q ss_pred             e-cCCCceEEE
Q 033492          102 K-PWEHFKSLT  111 (118)
Q Consensus       102 ~-PW~~~~~l~  111 (118)
                      . +|.++.+++
T Consensus       189 k~~~sk~i~i~  199 (202)
T PF07430_consen  189 KQFLSKKIKIL  199 (202)
T ss_pred             eccCcceEEEE
Confidence            7 577765443

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.09  E-value=2.2e-10  Score=82.92  Aligned_cols=91  Identities=29%  Similarity=0.403  Sum_probs=82.7

Q ss_pred             CCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE--EEEeceEEEEEEEEEEeC-CCceeEEEEEEE
Q 033492           25 KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGE--TQVVSGTNYRLILVVKDG-PSTKKFEAVVWE  101 (118)
Q Consensus        25 ~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~--~QVVaG~nY~l~v~~~~~-~~~~~c~~~V~~  101 (118)
                      +....+||.+|+|+.+|.+|+++++++.+++-+.++.++|.+|.+.+  .|..+|++|++.+++.|- .+...|.+.|++
T Consensus         3 ~~~~~~~w~~ip~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e   82 (202)
T PF07430_consen    3 QVPFSPKWIKIPDVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIE   82 (202)
T ss_pred             CcccCcccccCCcccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeee
Confidence            44678999999999999999999999999999999999999999999  889999999999999876 478899999999


Q ss_pred             ec--CCCceEEEEeee
Q 033492          102 KP--WEHFKSLTSFKP  115 (118)
Q Consensus       102 ~P--W~~~~~l~sf~~  115 (118)
                      +-  |++.++|.|+-.
T Consensus        83 ~~~~~~~~~kl~s~l~   98 (202)
T PF07430_consen   83 EKPQLTRIRKLASILA   98 (202)
T ss_pred             hhhhhhhhhhhheeeE
Confidence            85  999999988754

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=98.72  E-value=7.4e-08  Score=62.55  Aligned_cols=66  Identities=14%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCC---CceeEEEEEEEe
Q 033492           37 DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGP---STKKFEAVVWEK  102 (118)
Q Consensus        37 ~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~c~~~V~~~  102 (118)
                      ..+.+-+..+++.|+.+||+..+.++.|++|++|..|..+|..|+|++.+.+..   ..+.+++.||..
T Consensus         9 ~T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~   77 (92)
T TIGR01638         9 ETNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL   77 (92)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence            346667889999999999999999999999999999999999999999999764   345556666653

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=96.29  E-value=0.086  Score=39.33  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcCCCe---EEEEEEEEEEEEec--eEEEEEEEEEEeCC---CceeEEEEEEEe
Q 033492           37 DPKEKHVMEIGQFAVTEYNKQSKSAL---KFESVEKGETQVVS--GTNYRLILVVKDGP---STKKFEAVVWEK  102 (118)
Q Consensus        37 ~~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~c~~~V~~~  102 (118)
                      +++.-..+++|+-|..-+|-..++.+   .+..|.+|+..+++  |-+|.|.+.+.+-.   ....|.++|+..
T Consensus         3 ~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f~   76 (220)
T PF06907_consen    3 NPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFFK   76 (220)
T ss_dssp             -TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEET
T ss_pred             CCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEec
Confidence            56677788999999999998877765   34789999999985  78999999998753   678999999983

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572

Probab=90.93  E-value=0.55  Score=36.01  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCC---CceeEEEEEEEe
Q 033492           43 VMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGP---STKKFEAVVWEK  102 (118)
Q Consensus        43 v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~c~~~V~~~  102 (118)
                      ++-.|+.++.-||-..+.+++|..|.+.-++..+=+.|+|++++-+.+   ..+.|+..|.++
T Consensus        42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~  104 (265)
T TIGR01572        42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQ  104 (265)
T ss_pred             HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEec
Confidence            577899999999999999999999999999999999999999999875   567788877765

This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=88.70  E-value=0.27  Score=32.09  Aligned_cols=7  Identities=14%  Similarity=0.111  Sum_probs=4.8

Q ss_pred             CcchHHH
Q 033492            1 MNQRFCC    7 (118)
Q Consensus         1 m~~~~~~    7 (118)
                      |++|.++
T Consensus         1 MaSK~~l    7 (95)
T PF07172_consen    1 MASKAFL    7 (95)
T ss_pred             CchhHHH
Confidence            8887644

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1eqk_A	102	Solution Structure Of Oryzacystatin-I, A Cysteine P		6e-18
3ul5_A	139	Saccharum Officinarum Canecystatin-1 In Space Group		2e-12
3ima_B	91	Complex Strcuture Of Tarocystatin And Papain Length		3e-10
2l4v_A	135	Three Dimensional Structure Of Pineapple Cystatin L		2e-09
2w9p_A	87	Crystal Structure Of Potato Multicystatin Length =		4e-08
3l0r_A	115	Crystal Structure Of Salivary Cystatin From The Sof		2e-06
3lh4_A	115	Crystal Structure Of Sialostatin L2 Length = 115		8e-05
3mwz_A	115	Crystal Structure Of The Selenomethionine Derivativ		1e-04

>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine Proteinase Inhibitor Of The Rice, Oryza Sativa L. Japonica Length = 102

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 26  GALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
           G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   + QVV+GT Y   + 
Sbjct: 6   GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 65
Query: 86  VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
           VK+G + K +EA VWEKPW  FK L  FKP+
Sbjct: 66  VKEGDAKKLYEAKVWEKPWMDFKELQEFKPV 96

>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221 Length = 139

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 20  AAGDRKGALVGGWK--PIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSG 77
           A   R+  +VG  +  P     +   +E+ +FAV E+N ++ + L+FE + K   QVV+G
Sbjct: 37  AHNGRRVGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAG 96
Query: 78  TNYRLILVVKDGPSTKK-FEAVVWEKPWEHFKSLTSFKPM 116
           T +   + VK+    KK +EA VWEK WE+FK L SF+P+
Sbjct: 97  TMHHFTVQVKEAGGGKKLYEAKVWEKVWENFKQLQSFQPV 136

>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 27  ALVGGWKPIEDPKEK-HVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
           AL+GG   +E  +    V E+ +FAV E+NK+  + L+F  + K + QVVSG  + L + 
Sbjct: 1   ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 86  VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
           V +G   K +EA VW + W + K L  F P+
Sbjct: 61  VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91

>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin Length = 135

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 45  EIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPW 104
           ++ +FAV EYN ++ + L+F  V K + QVVSG  + L + V D    K +EA VWE+ W
Sbjct: 61  DLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWEQVW 120
Query: 105 EHFKSLTSF 113
            +F+ L  F
Sbjct: 121 MNFRQLQEF 129

>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 35  IEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKK 94
           + +P      E+ +FA+ +YNK+  + L+F      + QVV+G  Y + L   D    KK
Sbjct: 5   VPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKK 64
Query: 95  -FEAVVWEKPWEHFKSLTSFK 114
            ++A +W K WE FK +  FK
Sbjct: 65  IYKAKIWVKEWEDFKKVVEFK 85

>pdb|3L0R|A Chain A, Crystal Structure Of Salivary Cystatin From The Soft Tick Ornithodoros Moubata Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 20/107 (18%)
Query: 27  ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLIL-- 84
           ++ GGW   +DP E   +E+  FA +   +  +      +V++ ETQVV+G NY+L +  
Sbjct: 2   SIPGGWTR-QDPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEI 60
Query: 85  -----------------VVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
                            V KD        AV++  PW++ KS+TS++
Sbjct: 61  SPSVCKIGEVQYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107

>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2 Length = 115

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVE---KGETQVVSGTNYRLI 83
          AL GG++   +  +   +E+  +A + ++ Q      F++V    K ETQ V+GTNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLT 63
Query: 84 LVVKDG 89
          L V + 
Sbjct: 64 LKVAES 69

>pdb|3MWZ|A Chain A, Crystal Structure Of The Selenomethionine Derivative Of The L 22,47, 100 M Mutant Of Sialostatin L2 Length = 115

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESV---EKGETQVVSGTNYRLI 83
          AL GG++   +  +   +E   +A + ++ Q      F++V    K ETQ V+GTNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLEXAHYATSTWSAQQPGKTHFDTVVEVXKVETQTVAGTNYRLT 63
Query: 84 LVVKDG 89
          L V + 
Sbjct: 64 LKVAES 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	3e-40
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	1e-38
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	3e-36
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	2e-35
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	3e-27
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	4e-26
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	3e-21
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	2e-17
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	4e-17
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	7e-17
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	1e-16

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score =  128 bits (323), Expect = 3e-40
 Identities = 40/92 (43%), Positives = 62/92 (67%)

Query: 24  RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLI 83
             G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   + QVV+GT Y   
Sbjct: 4   DGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFT 63

Query: 84  LVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
           + VK+G + K +EA VWEKPW  FK L  FKP
Sbjct: 64  IEVKEGDAKKLYEAKVWEKPWMDFKELQEFKP 95

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score =  125 bits (315), Expect = 1e-38
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 20  AAGDRKGALVGGWK--PIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSG 77
               R+  ++GG    P+ +       ++ +FAV EYN ++ + L+F  V K + QVVSG
Sbjct: 34  DQEPREHPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSG 93

Query: 78  TNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
             + L + V D    K +EA VWE+ W +F+ L  F  
Sbjct: 94  MMHYLTVEVNDAGKKKLYEAKVWEQVWMNFRQLQEFTY 131

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score =  118 bits (296), Expect = 3e-36
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 31  GWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGP 90
           G   + +P      E+ +FA+ +YNK+  + L+F      + QVV+G  Y + L   D  
Sbjct: 1   GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDA 60

Query: 91  STKK-FEAVVWEKPWEHFKSLTSFKPM 116
             KK ++A +W K WE FK +  FK +
Sbjct: 61  GKKKIYKAKIWVKEWEDFKKVVEFKLV 87

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score =  116 bits (291), Expect = 2e-35
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 27  ALVGGWKPIED-PKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
           AL+GG   +E       V E+ +FAV E+NK+  + L+F  + K + QVVSG  + L + 
Sbjct: 1   ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60

Query: 86  VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
           V +G   K +EA VW + W + K L  F P+
Sbjct: 61  VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 95.9 bits (238), Expect = 3e-27
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 27  ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEK---GETQVVSGTNYRLI 83
           AL GG++   +  +   +E+  +A + ++ Q      F++V +    ETQ V+GTNYRL 
Sbjct: 4   ALRGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLT 63

Query: 84  LVV------------------KDGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
           L V                      + +    V++    +  KS+ SF+ 
Sbjct: 64  LKVAESTCELTSTYNKDTCQANANAAQRTCTTVIYR-NMQGEKSINSFEC 112

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 93.3 bits (231), Expect = 4e-26
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 20/107 (18%)

Query: 27  ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVV 86
           ++ GGW    DP E   +E+  FA +   +  +      +V++ ETQVV+G NY+L + +
Sbjct: 2   SIPGGWTRQ-DPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEI 60

Query: 87  -------------------KDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
                              KD        AV++  PW++ KS+TS++
Sbjct: 61  SPSVCKIGEVQYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima} Length = 95

 Score = 80.3 bits (197), Expect = 3e-21
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 15/89 (16%)

Query: 35  IEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSG-----TNYRLILVVKDG 89
           + DP    V EI +FA+ ++ +Q+   L    V+ G  Q++ G       Y LIL  K  
Sbjct: 14  VNDP---RVKEIAEFALKQHAEQN---LILAGVDAG--QIIKGIPHWDNYYNLILSAKHS 65

Query: 90  PST--KKFEAVVWEKPWEHFKSLTSFKPM 116
           P    K +  VV EK  ++   L +F P+
Sbjct: 66  PHEFSKFYNVVVLEKASDNSLKLVAFVPL 94

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 71.1 bits (173), Expect = 2e-17
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 24/118 (20%)

Query: 20  AAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS---ALKFESVEKGETQVVS 76
           +A  +   L GG     D  +K V     FA++EYNK         +   V     Q+V 
Sbjct: 2   SASAQSRTLAGGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVG 60

Query: 77  GTNYRLILVVKDGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
           G NY   +       TK                         + E PWE   S+ ++K
Sbjct: 61  GVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 118

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 70.2 bits (171), Expect = 4e-17
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 23/109 (21%)

Query: 28  LVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRLILV 85
           L+G   P+ D  ++ +    QFA+ EYN+ S        V     + Q+VSG  Y L + 
Sbjct: 2   LLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVE 60

Query: 86  VKDGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
           +      K                        VV+  PW +   L   K
Sbjct: 61  IGRTTCPKSSGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 109

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 69.8 bits (170), Expect = 7e-17
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 20  AAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE--SVEKGETQVVSG 77
           ++  +   LVGG       +E+ V     FAV EYNK S          V +   Q+V+G
Sbjct: 1   SSPGKPPRLVGGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAG 59

Query: 78  TNYRLILVVKDGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
            NY L + +     TK                         ++  PW+   +L+   
Sbjct: 60  VNYFLDVELCRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST 116

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 69.5 bits (169), Expect = 1e-16
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 24/118 (20%)

Query: 20  AAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE--SVEKGETQVVSG 77
           +         G  K I    +  V++  +++V ++N  +     F+   + +   Q+V G
Sbjct: 8   SQDLNSRVKPGFPKTI-KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG 66

Query: 78  TNYRLILVVKDGPSTKK---------------------FEAVVWEKPWEHFKSLTSFK 114
             Y L + +      K                        + VW  PW     +   +
Sbjct: 67  LKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLR 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	100.0
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	99.97
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	99.97
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.97
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.97
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.96
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.94
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.94
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.94
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.94
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.93
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.93
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.92
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.87
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.86
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	96.5
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	92.86

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=100.00  E-value=2.2e-32  Score=176.97  Aligned_cols=90  Identities=38%  Similarity=0.608  Sum_probs=81.8

Q ss_pred             cccceeeeCC-CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEecCC
Q 033492           27 ALVGGWKPIE-DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWE  105 (118)
Q Consensus        27 ~~~GG~~~i~-~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~PW~  105 (118)
                      .++|||+++. +++||+++++++||+.+||+++|+.|.|.+|+++++|||||+||+|+++++++++.+.|++.||++||+
T Consensus         1 ~~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~~~~~~~y~a~V~~~pW~   80 (91)
T 3ima_B            1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGKKKVYEAKVWVQAWL   80 (91)
T ss_dssp             CCBTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEEEEEEEEGGG
T ss_pred             CCCcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCceEEEEEEEEEeeCC
Confidence            3789999953 689999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CceEEEEeeec
Q 033492          106 HFKSLTSFKPM  116 (118)
Q Consensus       106 ~~~~l~sf~~~  116 (118)
                      |+++|+||+|+
T Consensus        81 ~~~~l~~F~~~   91 (91)
T 3ima_B           81 NSKKLHEFSPI   91 (91)
T ss_dssp             TEEEEEEEEC-
T ss_pred             CcEEEEEEEeC
Confidence            99999999986

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=99.97  E-value=8.7e-31  Score=172.41  Aligned_cols=93  Identities=43%  Similarity=0.791  Sum_probs=88.1

Q ss_pred             CCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEecC
Q 033492           25 KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPW  104 (118)
Q Consensus        25 ~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~PW  104 (118)
                      ..+++|||+++.+++||+++++++||+.+||+++++.|.|++|+++++|||||+||+|+++++++++.+.|+++||++||
T Consensus         5 ~~~~~GG~~~~~~~~~~~v~~~a~~Av~~~n~~~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~~~~~~~c~~~V~~~PW   84 (102)
T 1eqk_A            5 GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPW   84 (102)
T ss_dssp             SCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTT
T ss_pred             cCCCCcccccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCcEEEEEEEEEeeC
Confidence            45689999996458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeeecC
Q 033492          105 EHFKSLTSFKPMV  117 (118)
Q Consensus       105 ~~~~~l~sf~~~~  117 (118)
                      .++++|++|+++.
T Consensus        85 ~~~~~l~~f~c~~   97 (102)
T 1eqk_A           85 MDFKELQEFKPVD   97 (102)
T ss_dssp             TTBCCEEEEECCC
T ss_pred             CCceEEEEEEcCC
Confidence            9999999999875

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=99.97  E-value=8.1e-31  Score=181.13  Aligned_cols=94  Identities=38%  Similarity=0.646  Sum_probs=78.4

Q ss_pred             CCCcccceeeeCC--CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEe-CCCceeEEEEEE
Q 033492           24 RKGALVGGWKPIE--DPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKD-GPSTKKFEAVVW  100 (118)
Q Consensus        24 ~~~~~~GG~~~i~--~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~-~~~~~~c~~~V~  100 (118)
                      +...++|||+++.  +++||+++++++||+.+||+++|+.|.|.+|+++++|||||+||+|++++.+ +++.+.|+++||
T Consensus        41 ~~~~~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~l~~~kVv~a~sQVVAG~nY~L~V~a~d~~g~~~~y~a~Vw  120 (139)
T 3ul5_A           41 RRVGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKLYEAKVW  120 (139)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEECSSCCEEEEEEEEE
T ss_pred             CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEEEecCEEEEEEEEEecCCCCeEEEEEEEE
Confidence            4667899999953  7899999999999999999999999999999999999999999999999999 678999999999


Q ss_pred             EecCCCceEEEEeeecC
Q 033492          101 EKPWEHFKSLTSFKPMV  117 (118)
Q Consensus       101 ~~PW~~~~~l~sf~~~~  117 (118)
                      ++||+|+++|+||+|+.
T Consensus       121 ekPW~n~k~L~sF~p~~  137 (139)
T 3ul5_A          121 EKVWENFKQLQSFQPVG  137 (139)
T ss_dssp             EETTTTEEEEEEEEECC
T ss_pred             EeeCCCceEEEEEEEcC
Confidence            99999999999999986

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.97  E-value=9.7e-30  Score=175.27  Aligned_cols=93  Identities=33%  Similarity=0.538  Sum_probs=88.6

Q ss_pred             CCCcccceeeeCCC---CCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEE
Q 033492           24 RKGALVGGWKPIED---PKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVW  100 (118)
Q Consensus        24 ~~~~~~GG~~~i~~---~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~  100 (118)
                      +..+++|||+++ +   ++|++++++++||+.+||+++|+.|.|++|+++++|||||+||+|++++.++++.+.|+++||
T Consensus        38 ~~~~~~GG~~~i-~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f~kVv~a~~QVVAG~nY~l~vev~~~~~~~~c~a~Vw  116 (135)
T 2l4v_A           38 REHPIMGGIYDA-PLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVW  116 (135)
T ss_dssp             CCCCCCCCSSCC-CCTTTTSHHHHHHHHHHHHHHHHHTSCCCEEEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCCCCccCcC-CCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEecCEEEEEEEEEecCCceEEEEEEEE
Confidence            346789999996 6   899999999999999999999999999999999999999999999999999998999999999


Q ss_pred             EecCCCceEEEEeeecC
Q 033492          101 EKPWEHFKSLTSFKPMV  117 (118)
Q Consensus       101 ~~PW~~~~~l~sf~~~~  117 (118)
                      ++||+|+++|++|+|++
T Consensus       117 ~kPW~n~~~L~~f~~~~  133 (135)
T 2l4v_A          117 EQVWMNFRQLQEFTYLG  133 (135)
T ss_dssp             ECSSSCCEEEEEEEECS
T ss_pred             EecCCCceEEEEEEecC
Confidence            99999999999999986

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.97  E-value=1.1e-29  Score=162.62  Aligned_cols=86  Identities=31%  Similarity=0.612  Sum_probs=81.8

Q ss_pred             eeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeC-CCceeEEEEEEEecCCCceE
Q 033492           31 GWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDG-PSTKKFEAVVWEKPWEHFKS  109 (118)
Q Consensus        31 G~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~-~~~~~c~~~V~~~PW~~~~~  109 (118)
                      ||+++.|++||+++++++||+.+||+++|+.+.+++|+++++|||||+||+|+++++++ .+...|+++||++||+++++
T Consensus         1 G~~~~~~~~d~~v~~~~~fAv~~~n~~~n~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~~~~   80 (87)
T 2w9q_A            1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKK   80 (87)
T ss_dssp             CCEECSSTTSHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEE
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCCeEEEEEEEEEeeCCCceE
Confidence            78997779999999999999999999999999999999999999999999999999995 57789999999999999999


Q ss_pred             EEEeeec
Q 033492          110 LTSFKPM  116 (118)
Q Consensus       110 l~sf~~~  116 (118)
                      |++|+|+
T Consensus        81 l~~f~~~   87 (87)
T 2w9q_A           81 VVEFKLV   87 (87)
T ss_dssp             EEEEEEC
T ss_pred             EEeeccC
Confidence            9999986

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.96  E-value=3.2e-28  Score=158.69  Aligned_cols=86  Identities=31%  Similarity=0.494  Sum_probs=81.1

Q ss_pred             CCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceE-----EEEEEEEEEeC--CCceeEEE
Q 033492           25 KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGT-----NYRLILVVKDG--PSTKKFEA   97 (118)
Q Consensus        25 ~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~-----nY~l~v~~~~~--~~~~~c~~   97 (118)
                      .++++|||+++ |+|||+++++++||+++||++   .+.|.+|+++  |||||+     ||+|+++++++  .+.+.|++
T Consensus         2 ~~~~~Gg~~~i-~~nd~~v~e~a~fAv~e~N~~---~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~~~~~~~~~y~a   75 (95)
T 2kxg_A            2 PGPAIGEVIGI-SVNDPRVKEIAEFALKQHAEQ---NLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEFSKFYNV   75 (95)
T ss_dssp             CCCSSCCCCCC-CTTCHHHHHHHHHHHHHCCTT---CCEEEEEEEE--EEECSSCSSCCEEEEEEEEESCTTSCCEEEEE
T ss_pred             CCCCCCcceEC-CCCCHHHHHHHHHHHHHHHhh---CcEEEEEEEE--eEecCccccCccEEEEEEEecCCCCCceEEEE
Confidence            35689999997 999999999999999999987   6899999999  999999     99999999999  67889999


Q ss_pred             EEEEecCCCceEEEEeeec
Q 033492           98 VVWEKPWEHFKSLTSFKPM  116 (118)
Q Consensus        98 ~V~~~PW~~~~~l~sf~~~  116 (118)
                      +||++||+|+++|+||+|+
T Consensus        76 ~Vw~kpW~n~~~L~sF~~~   94 (95)
T 2kxg_A           76 VVLEKASDNSLKLVAFVPL   94 (95)
T ss_dssp             EEEEETTTTEEEEEEEEEC
T ss_pred             EEEEccCCCcEEEEEeEec
Confidence            9999999999999999997

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.94  E-value=1.5e-26  Score=153.42  Aligned_cols=87  Identities=28%  Similarity=0.407  Sum_probs=81.3

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEEEEEEeceEEEEEEEEEEeCC--------------
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSAL--KFESVEKGETQVVSGTNYRLILVVKDGP--------------   90 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~--------------   90 (118)
                      +++|||+++ +++||+++++++||+.+||+++++.|  .+.+|+++++|||||++|+|++++++++              
T Consensus         1 ~~~Gg~~~~-~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t~C~k~~~~~~~C~~~   79 (111)
T 1yvb_I            1 RLLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFH   79 (111)
T ss_dssp             CCTTCEECC-CTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSSEEEEEEEEEEEBSSCSSSSCSSCCCBC
T ss_pred             CCCCCceEC-CCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCCC
Confidence            378999995 89999999999999999999999887  8899999999999999999999999984              


Q ss_pred             ------CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ------STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ------~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                            +...|.++||.+||.++.+|++|+
T Consensus        80 ~~~~~~~~~~C~~~V~~~pW~~~~~l~~~~  109 (111)
T 1yvb_I           80 DEPEMAKYTTCTFVVYSIPWLNQIKLLESK  109 (111)
T ss_dssp             SSTTTSCCEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CCcccccccEEEEEEEecCCCCccEeeccc
Confidence                  468899999999999999999986

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.94  E-value=2.5e-27  Score=154.15  Aligned_cols=82  Identities=29%  Similarity=0.407  Sum_probs=76.2

Q ss_pred             cceeeeCCCCCcHHHHHHHHHHHHHHHHhc-CCCeEEEEEEEE-----------EEEEeceEEEEEEEEEEeCCCceeEE
Q 033492           29 VGGWKPIEDPKEKHVMEIGQFAVTEYNKQS-KSALKFESVEKG-----------ETQVVSGTNYRLILVVKDGPSTKKFE   96 (118)
Q Consensus        29 ~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~-~~~~~~~~V~~a-----------~~QVVaG~nY~l~v~~~~~~~~~~c~   96 (118)
                      .|||++| |+ ||+++++|+||++++|++. ++.++|.+|+++           ++| |||+||+|++++.++    .|+
T Consensus         1 ~Ggw~~i-dv-~~~iqela~FAV~e~nk~~~~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltlea~d~----~ye   73 (97)
T 2o9u_X            1 MGEWEII-DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVYASDK----LFR   73 (97)
T ss_dssp             -CCCEEE-CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEEETTE----EC-
T ss_pred             CCCceEC-CC-CHHHHHHHHHHHHHHhccccCCCcEEEEEEEcccccccccchhhee-eccEEEEEEEEEeCC----ceE
Confidence            4999998 99 9999999999999999987 889999999999           999 999999999999876    899


Q ss_pred             EEEEEecCCCceEEEEeeecC
Q 033492           97 AVVWEKPWEHFKSLTSFKPMV  117 (118)
Q Consensus        97 ~~V~~~PW~~~~~l~sf~~~~  117 (118)
                      +.||++||+++++|+||+++.
T Consensus        74 A~V~ekpw~n~k~L~sF~~~~   94 (97)
T 2o9u_X           74 ADISEDYKTRGRKLLRFNGPV   94 (97)
T ss_dssp             CEEEEETTTCCEEEEECCCCC
T ss_pred             EEEEEecCCCcEEeeEccCCC
Confidence            999999999999999999864

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.94  E-value=4e-26  Score=153.85  Aligned_cols=90  Identities=27%  Similarity=0.336  Sum_probs=77.1

Q ss_pred             CCCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCC--eEEEEEEEEEEEEeceEEEEEEEEEEeCC-----------
Q 033492           24 RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSA--LKFESVEKGETQVVSGTNYRLILVVKDGP-----------   90 (118)
Q Consensus        24 ~~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~--~~~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------   90 (118)
                      +++.++|||+++ +++||+++++++||+.+||+++++.  |.+.+|+++++|||+|++|+|+++++++.           
T Consensus         5 ~~~~~~Gg~~~~-~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~C   83 (120)
T 3gax_A            5 KPPRLVGGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELCRTTCTKTQPNLDNC   83 (120)
T ss_dssp             -------CCEEE-CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEESCC--CCCC
T ss_pred             ccCccCCCCEeC-CCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecCeEEEEEEEEEeeeccCCCCCcccC
Confidence            367889999996 8999999999999999999999998  57799999999999999999999999852           


Q ss_pred             ---------CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ---------STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ---------~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                               +...|+++||.+||+++.+|++++
T Consensus        84 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~  116 (120)
T 3gax_A           84 PFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST  116 (120)
T ss_dssp             CBCSSHHHHCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCcCCccccCceEEEEEEEecCCCCeEEeccce
Confidence                     468999999999999999999875

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.94  E-value=9.4e-26  Score=152.23  Aligned_cols=88  Identities=28%  Similarity=0.384  Sum_probs=78.8

Q ss_pred             Cc-ccceeeeCCCCCcHHHHHHHHHHHHHHHHh-cCCCeEE--EEEEEEEEEEeceEEEEEEEEEEeCC-----------
Q 033492           26 GA-LVGGWKPIEDPKEKHVMEIGQFAVTEYNKQ-SKSALKF--ESVEKGETQVVSGTNYRLILVVKDGP-----------   90 (118)
Q Consensus        26 ~~-~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~-~~~~~~~--~~V~~a~~QVVaG~nY~l~v~~~~~~-----------   90 (118)
                      .. ++|||+++ +++||+++++++||+.+||++ +++.|.|  .+|+++++|||+|+||+|++++++++           
T Consensus         7 ~~~~~Gg~~~~-~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t~C~k~~~~~~~C   85 (122)
T 1roa_A            7 SRTLAGGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNC   85 (122)
T ss_dssp             -----CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSC
T ss_pred             cCcCCCCCeEC-CCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccC
Confidence            44 89999996 999999999999999999999 9999855  99999999999999999999999874           


Q ss_pred             ---------CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ---------STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ---------~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                               +...|.++||.+||+++.+|++|+
T Consensus        86 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~  118 (122)
T 1roa_A           86 PFNDQPKLKEEEFCSFQINEVPWEDKISILNYK  118 (122)
T ss_dssp             CBCCSTTCCCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCCcccccceEEEEEEEecccCCccEECccc
Confidence                     368899999999999999999986

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.93  E-value=1.4e-25  Score=150.58  Aligned_cols=87  Identities=31%  Similarity=0.616  Sum_probs=78.3

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEEEEEEeceEEEEEEEEEEeC---------------
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSAL--KFESVEKGETQVVSGTNYRLILVVKDG---------------   89 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~---------------   89 (118)
                      .++|||+++ +++||+++++++||+.  |+++++.|  .+.+|++|++|||||+||+|+++++++               
T Consensus         2 ~~~GG~~~i-~~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~~~~~~~~~C~   78 (115)
T 3l0r_A            2 SIPGGWTRQ-DPTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEVQYSAEQCV   78 (115)
T ss_dssp             -CCCSCEEE-CTTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBTTBCCCTTTCC
T ss_pred             CCcccceeC-CCCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEeeEEEEEEEEEecccccccccccccccCc
Confidence            478999996 8899999999999999  88888887  669999999999999999999999864               


Q ss_pred             ----CCceeEEEEEEEecCCCceEEEEeeec
Q 033492           90 ----PSTKKFEAVVWEKPWEHFKSLTSFKPM  116 (118)
Q Consensus        90 ----~~~~~c~~~V~~~PW~~~~~l~sf~~~  116 (118)
                          .+...|.++||++||+++.+|++|.--
T Consensus        79 ~~~~~~~~~C~~~V~~~PW~~~~~l~~~~~~  109 (115)
T 3l0r_A           79 PKDAQQKSTCVAVIYHVPWQNQKSVTSYRCE  109 (115)
T ss_dssp             BSCTTSCEEEEEEEEEEGGGTEEEEEEEEEC
T ss_pred             ccCCCceeEEEEEEEEecCCCeeEEEEEEcc
Confidence                267899999999999999999999743

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.93  E-value=6e-25  Score=150.39  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=81.5

Q ss_pred             CCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCe--EEEEEEEEEEEEeceEEEEEEEEEEeCC------------
Q 033492           25 KGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSAL--KFESVEKGETQVVSGTNYRLILVVKDGP------------   90 (118)
Q Consensus        25 ~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~------------   90 (118)
                      ...++|||+++ +++||+++++++||+.+||+++++.|  ++.+|+++++|||||+||+|++++++++            
T Consensus        13 ~~~~~Gg~~~~-~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~t~C~K~~~~~~~~C   91 (131)
T 2ch9_A           13 SRVKPGFPKTI-KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDC   91 (131)
T ss_dssp             CSSCCCCCEEC-CTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCGGGC
T ss_pred             cccCCCCCeeC-CCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCCeEEEEEEEEEcccccCCCCCccccC
Confidence            45789999995 89999999999999999999999987  5699999999999999999999999752            


Q ss_pred             ---------CceeEEEEEEEecCCCceEEEEeee
Q 033492           91 ---------STKKFEAVVWEKPWEHFKSLTSFKP  115 (118)
Q Consensus        91 ---------~~~~c~~~V~~~PW~~~~~l~sf~~  115 (118)
                               +...|.++||.+||+++.+|++|.-
T Consensus        92 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~~  125 (131)
T 2ch9_A           92 DFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC  125 (131)
T ss_dssp             CBCCSTTTCCEEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CcccCcccccccEEEEEEEEecCCCeeEEEEEec
Confidence                     1248999999999999999999974

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.92  E-value=2.8e-24  Score=143.71  Aligned_cols=87  Identities=30%  Similarity=0.472  Sum_probs=78.8

Q ss_pred             CcccceeeeCCCC-CcHHHHHHHHHHHHHHHHhcC-CCe--EEEEEEEEEEEEeceEEEEEEEEEEeC------------
Q 033492           26 GALVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSK-SAL--KFESVEKGETQVVSGTNYRLILVVKDG------------   89 (118)
Q Consensus        26 ~~~~GG~~~i~~~-~d~~v~~~a~~Av~~~n~~~~-~~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~------------   89 (118)
                      +.++|||+++ ++ +||+++++++||+.+||++++ +.|  .+++|+++++|||||+||+|+++++++            
T Consensus         3 ~~~~Gg~~~~-~~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~~   81 (115)
T 3mwz_A            3 LALRGGYRER-SNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCELTSTYNKDT   81 (115)
T ss_dssp             CCCSSCCEEE-CTTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCTTT
T ss_pred             cccCCcceEC-CCCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCCEEEEEEEEEEeccccCCCcCCccc
Confidence            4789999996 67 999999999999999999998 665  668999999999999999999999753            


Q ss_pred             ------CCceeEEEEEEEecCCCceEEEEee
Q 033492           90 ------PSTKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        90 ------~~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                            .+...|+++||.+| .++.+|++|+
T Consensus        82 C~~~~~~~~~~C~~~V~~~P-~~~~~l~~~~  111 (115)
T 3mwz_A           82 CQANANAAQRTCTTVIYRNM-QGEKSINSFE  111 (115)
T ss_dssp             CCCCTTSCEEEEEEEEEECT-TSCEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEEEECC-CCEEEEcccc
Confidence                  26789999999999 9999999986

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.87  E-value=4.1e-22  Score=130.32  Aligned_cols=85  Identities=18%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEe-c-C
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEK-P-W  104 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~-P-W  104 (118)
                      +|+|||+++ +++||++++++++|+.++|++.|..|.+.+++++++|||||+||+|++++.++.   .+++.||.. | |
T Consensus         1 mm~GG~~~~-~~~~~evq~i~~~a~~~~n~~~~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~---~~h~~vy~~lp~~   76 (98)
T 2oct_A            1 MMSGAPSAT-QPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             -CCSSCCCC-EECCHHHHHHHHHHHHHHHHHHTSCCSCCEEEEEEEEEEEEEEEEEEEECSTTC---EEEEEEEEESSTT
T ss_pred             CCcccCcCC-CCCCHHHHHHHHHHHHHHHhhcCCccceeEEEEEEEEEeCCEEEEEEEEECCCc---EEEEEEEecCCCC
Confidence            379999995 779999999999999999999999998899999999999999999999998876   789999997 4 8


Q ss_pred             CCceEEEEeee
Q 033492          105 EHFKSLTSFKP  115 (118)
Q Consensus       105 ~~~~~l~sf~~  115 (118)
                      .+..+|+||+.
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 2oct_A           77 NKSLTLSNYQT   87 (98)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            88999999864

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.86  E-value=7.5e-23  Score=133.50  Aligned_cols=85  Identities=20%  Similarity=0.244  Sum_probs=78.4

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEec--C
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKP--W  104 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~P--W  104 (118)
                      +++|||+++ +++||+++++++||+.++|+++|+.|++.+|+++++|||||+||+|+++++++.   -.++.||...  |
T Consensus         1 ~~~GG~~~~-~~~d~ev~~~a~~av~~~n~~~n~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~---c~~~~V~~~l~~~   76 (98)
T 1cyu_A            1 MIPGGLSEA-KPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YLHLKVFKSLPGQ   76 (98)
T ss_dssp             CCCSSCSSE-EESCTTHHHHHHHTCTTTTTSSCCSSSCEEEEEEEEECSSSCEEEEEEEECSSC---BCEEEEECCCSSS
T ss_pred             CCCcccccC-CCCCHHHHHHHHHHHHHHHhhcCCCcceEEEEEEEEEEecceEEEEEEEEcCCc---EEEEEEecCCCCC
Confidence            379999995 889999999999999999999999999999999999999999999999999886   5689999974  7


Q ss_pred             CCceEEEEeee
Q 033492          105 EHFKSLTSFKP  115 (118)
Q Consensus       105 ~~~~~l~sf~~  115 (118)
                      .+.++|++|+.
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 1cyu_A           77 NEDLVLTGYQV   87 (98)
T ss_dssp             CCCCEEEEEEC
T ss_pred             CCCeEEEEEec
Confidence            88999999975

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=96.50  E-value=0.061  Score=39.04  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=56.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcCCCe---EEEEEEEEEEEEec--eEEEEEEEEEEeCC---CceeEEEEEEEec
Q 033492           37 DPKEKHVMEIGQFAVTEYNKQSKSAL---KFESVEKGETQVVS--GTNYRLILVVKDGP---STKKFEAVVWEKP  103 (118)
Q Consensus        37 ~~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~c~~~V~~~P  103 (118)
                      +++.-..+++|+-|+.-+|-..++.+   .+..|.+|+.++++  |.+|.+++.+.+..   ....|.++|+..+
T Consensus         4 ~psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~Vlf~~   78 (222)
T 2bo9_B            4 PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPS   78 (222)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEEC
T ss_pred             CCcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEEEEcc
Confidence            66777788999999999999887765   44789999999996  68999999999874   5789999999874

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=92.86  E-value=0.57  Score=30.05  Aligned_cols=69  Identities=19%  Similarity=0.052  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEe----ceEEEEEEEEEEeCC------------------CceeEEEE
Q 033492           41 KHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVV----SGTNYRLILVVKDGP------------------STKKFEAV   98 (118)
Q Consensus        41 ~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVV----aG~nY~l~v~~~~~~------------------~~~~c~~~   98 (118)
                      ..|++++..|+..||+++.+.. +.+.+++.-+-.    -|+.+.+.+.+.++.                  -.+.|...
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~n-lFRLl~~~p~p~~~~d~~~~~~v~FtIkETvC~~~~~~~p~~CdFke~G~vk~C~Gt   81 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEAN-LYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGT   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSE-EEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCCccc-eeeeecccCCCccCCCCCCcceeEEEEeeeecCCCCCCCcccCCccCCCeeeeceEE
Confidence            4688999999999999986654 345555554443    356788888887653                  35578888


Q ss_pred             EEEecCCCceEE
Q 033492           99 VWEKPWEHFKSL  110 (118)
Q Consensus        99 V~~~PW~~~~~l  110 (118)
                      |...+......|
T Consensus        82 v~~~~~~~~~~i   93 (101)
T 1kwi_A           82 VTLDQIKDPLDI   93 (101)
T ss_dssp             ECCC----CCEE
T ss_pred             EEecCCCceEEe
Confidence            887765554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	5e-35
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	6e-19
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	2e-16
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	7e-16
d1kwia_	98	d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {P	3e-06

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score =  114 bits (286), Expect = 5e-35
 Identities = 40/94 (42%), Positives = 62/94 (65%)

Query: 22  GDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYR 81
               G ++GG +P+ +  + H++++ +FAVTE+NK++ S L+FE +   + QVV+GT Y 
Sbjct: 2   SSDGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYY 61

Query: 82  LILVVKDGPSTKKFEAVVWEKPWEHFKSLTSFKP 115
             + VK+G + K +EA VWEKPW  FK L  FKP
Sbjct: 62  FTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKP 95

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 6e-19
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 24/108 (22%)

Query: 30  GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS---ALKFESVEKGETQVVSGTNYRLILVV 86
           GG     D  +K V     FA++EYNK         +   V     Q+V G NY   +  
Sbjct: 1   GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKF 59

Query: 87  KDGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
                TK                         + E PWE   S+ ++K
Sbjct: 60  GRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 107

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.0 bits (163), Expect = 2e-16
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 23/107 (21%)

Query: 30  GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE--SVEKGETQVVSGTNYRLILVVK 87
           G   P+ D  ++ +    QFA+ EYN+ S          V   + Q+VSG  Y L + + 
Sbjct: 1   GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIG 59

Query: 88  DGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
                K                        VV+  PW +   L   K
Sbjct: 60  RTTCPKSSGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 106

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 7e-16
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 23/107 (21%)

Query: 30  GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFE--SVEKGETQVVSGTNYRLILVVK 87
           GG       +E+ V     FAV EYNK S          V +   Q+V+G NY L + + 
Sbjct: 1   GGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELG 59

Query: 88  DGPSTKKFE--------------------AVVWEKPWEHFKSLTSFK 114
               TK                         ++  PW+   +L+   
Sbjct: 60  RTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST 106

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.4 bits (94), Expect = 3e-06
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 21/88 (23%)

Query: 45  EIGQFAVTEYNKQSKSALKFE--SVEKGETQVV-SGTNYRLILVVKDGPSTKK------- 94
           E    AV   N+QS  A  +    +++        GT   +   VK+    +        
Sbjct: 6   EAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPEL 65

Query: 95  -----------FEAVVWEKPWEHFKSLT 111
                          V     +    +T
Sbjct: 66  CDFKENGRVKQCVGTVTLDQIKDPLDIT 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	100.0
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.93
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.74
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.7
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.52
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	97.49

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=100.00  E-value=1.6e-32  Score=179.49  Aligned_cols=94  Identities=43%  Similarity=0.781  Sum_probs=89.8

Q ss_pred             CCCcccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEec
Q 033492           24 RKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKP  103 (118)
Q Consensus        24 ~~~~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~P  103 (118)
                      ...+++|||+++.|++||+++++++||+.+||+++++.|+|++|+++++|||+|+||+|++++.+++..+.|+++||++|
T Consensus         4 ~~~~l~GG~~~i~d~nd~~v~e~a~~Av~~~N~~~~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~~~~~k~c~~~Vw~~p   83 (102)
T d1eqka_           4 DGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKP   83 (102)
T ss_dssp             CSCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBT
T ss_pred             CCCcccCCcccCCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEEEeeeeccceeEEEEEEEccCCccEEEEEEEEEee
Confidence            35689999999778999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             CCCceEEEEeeecC
Q 033492          104 WEHFKSLTSFKPMV  117 (118)
Q Consensus       104 W~~~~~l~sf~~~~  117 (118)
                      |+++.+|++|+|+.
T Consensus        84 W~~~~~l~~f~~~~   97 (102)
T d1eqka_          84 WMDFKELQEFKPVD   97 (102)
T ss_dssp             TTTBCCEEEEECCC
T ss_pred             CCCccEEEEEEEcC
Confidence            99999999999974

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.6e-26  Score=148.90  Aligned_cols=84  Identities=27%  Similarity=0.380  Sum_probs=76.0

Q ss_pred             ceeeeCCCCCcHHHHHHHHHHHHHHHHhcCC-Ce--EEEEEEEEEEEEeceEEEEEEEEEEeCC----------------
Q 033492           30 GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKS-AL--KFESVEKGETQVVSGTNYRLILVVKDGP----------------   90 (118)
Q Consensus        30 GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~-~~--~~~~V~~a~~QVVaG~nY~l~v~~~~~~----------------   90 (118)
                      |||.++ |++||+++++++||+.+||+++++ .|  .+++|++|++|||||++|+|+++++++.                
T Consensus         1 GG~~~~-~~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~T~C~K~~~~~~~c~~~~~   79 (111)
T d1roaa_           1 GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQ   79 (111)
T ss_dssp             CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCBCCS
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecCcEEEEEEEEEecccccccccccccccccC
Confidence            999995 999999999999999999999874 45  5699999999999999999999998653                


Q ss_pred             ----CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ----STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ----~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                          +...|+++||++||+++.+|++++
T Consensus        80 ~~~~~~~~C~~~V~~~PW~~~~~v~~~~  107 (111)
T d1roaa_          80 PKLKEEEFCSFQINEVPWEDKISILNYK  107 (111)
T ss_dssp             TTCCCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ccccceEEEEEEEEEcccCCceEEeecc
Confidence                467899999999999999999875

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=1.9e-25  Score=146.36  Aligned_cols=84  Identities=27%  Similarity=0.391  Sum_probs=76.8

Q ss_pred             ceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeE--EEEEEEEEEEEeceEEEEEEEEEEeCC-----------------
Q 033492           30 GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALK--FESVEKGETQVVSGTNYRLILVVKDGP-----------------   90 (118)
Q Consensus        30 GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~-----------------   90 (118)
                      ||+.++ +++||+++++++||+.+||+.+++.|.  +.+|++|++|||+|++|+|++++++++                 
T Consensus         1 Gg~~~~-~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~~   79 (108)
T d1cewi_           1 GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFHDEP   79 (108)
T ss_dssp             CCCEEC-CTTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTCTTHHHHHHHHCS
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecCcEEEEEEEEEecccccccccccccccccCc
Confidence            899995 999999999999999999999999975  479999999999999999999998643                 


Q ss_pred             ---CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ---STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ---~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                         +...|+++||++||+++.+|++++
T Consensus        80 ~~~~~~~C~~~V~~~pW~~~~~v~~~~  106 (108)
T d1cewi_          80 EMAKYTTCTFVVYSIPWLNQIKLLESK  106 (108)
T ss_dssp             SCSCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ccCceEEEEEEEEEeccCCceEeeecc
Confidence               357999999999999999998864

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=145.59  Aligned_cols=84  Identities=26%  Similarity=0.340  Sum_probs=77.3

Q ss_pred             ceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEE--EEEEEEEEEEeceEEEEEEEEEEeCC-----------------
Q 033492           30 GGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKF--ESVEKGETQVVSGTNYRLILVVKDGP-----------------   90 (118)
Q Consensus        30 GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~--~~V~~a~~QVVaG~nY~l~v~~~~~~-----------------   90 (118)
                      |||.+ .+++||+++++++||+.+||+.+++.|.|  .+|++|++|||+|++|+|++++++++                 
T Consensus         1 Gg~~~-~~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~~   79 (110)
T d1r4ca_           1 GGPMD-ASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQP   79 (110)
T ss_dssp             CCCEE-CCTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETTSSCGGGCCBCCST
T ss_pred             CCCcc-CCCCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccCCEEEEEEEEeecccccCccccccCccccCc
Confidence            89999 59999999999999999999999998854  89999999999999999999998653                 


Q ss_pred             ---CceeEEEEEEEecCCCceEEEEee
Q 033492           91 ---STKKFEAVVWEKPWEHFKSLTSFK  114 (118)
Q Consensus        91 ---~~~~c~~~V~~~PW~~~~~l~sf~  114 (118)
                         +...|+++||++||+++.+|++++
T Consensus        80 ~~~~~~~C~~~V~~~PW~~~~~l~~~~  106 (110)
T d1r4ca_          80 HLKRKAFCSFQIYAVPWQGTMTLSKST  106 (110)
T ss_dssp             TTCCEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             cccceEEEEEEEEEeccCCceEEeeee
Confidence               466899999999999999999875

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-18  Score=110.36  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEe-cCC
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEK-PWE  105 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~-PW~  105 (118)
                      +|+|||++ ..+.+|++++++.....+.+++.|.+|...++++.++|||||+||+|+++++++.   .+|+.||.. |..
T Consensus         1 mm~GG~s~-~~~at~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVaG~NYfIKV~vg~~~---~~HlrV~~~Lp~~   76 (98)
T d1stfi_           1 MMSGAPSA-TQPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             CCBSCCCC-CEECCHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECGGG
T ss_pred             CcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCCC
Confidence            58999999 6889999999999999999999999998889999999999999999999999987   899999997 887


Q ss_pred             Cc-eEEEEeee
Q 033492          106 HF-KSLTSFKP  115 (118)
Q Consensus       106 ~~-~~l~sf~~  115 (118)
                      +. .+|+++.-
T Consensus        77 ~~~l~L~~~q~   87 (98)
T d1stfi_          77 NKPLTLSNYQT   87 (98)
T ss_dssp             CCCCEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            75 79998863

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=104.55  Aligned_cols=85  Identities=21%  Similarity=0.286  Sum_probs=77.6

Q ss_pred             cccceeeeCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEeceEEEEEEEEEEeCCCceeEEEEEEEe-cCC
Q 033492           27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEK-PWE  105 (118)
Q Consensus        27 ~~~GG~~~i~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~~~~~c~~~V~~~-PW~  105 (118)
                      +|+|||++ ..+.+|++|++++....+++++.|..|.-.+.++.++|||||+||+++++++++.   .+|+.||.. |..
T Consensus         1 mm~GG~s~-~~~at~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVAGtNYfIKV~vG~~~---~vHlrVf~~Lp~~   76 (98)
T d1nb5i_           1 MIPGGLSE-AKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YMHLKVFKSLPGQ   76 (98)
T ss_dssp             CCTTSCCC-CEECCHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECTTS
T ss_pred             CccCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCCC
Confidence            58999999 6889999999999999999999999998889999999999999999999999887   899999997 887


Q ss_pred             C-ceEEEEeee
Q 033492          106 H-FKSLTSFKP  115 (118)
Q Consensus       106 ~-~~~l~sf~~  115 (118)
                      + ..+|+++.-
T Consensus        77 ~~~l~L~~~q~   87 (98)
T d1nb5i_          77 NEDLVLTGYQV   87 (98)
T ss_dssp             CCCCEEEEEEE
T ss_pred             CCccEEEEEEc
Confidence            6 479998863

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=1.5e-14  Score=92.39  Aligned_cols=70  Identities=20%  Similarity=0.107  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCe--EEEEEEEEEEEEe-ceEEEEEEEEEEeCC------------------CceeEEEEEE
Q 033492           42 HVMEIGQFAVTEYNKQSKSAL--KFESVEKGETQVV-SGTNYRLILVVKDGP------------------STKKFEAVVW  100 (118)
Q Consensus        42 ~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVV-aG~nY~l~v~~~~~~------------------~~~~c~~~V~  100 (118)
                      .|++++++|+.+||+++++.+  ++.+|.+++.|+| +|++|+|++++++++                  ..+.|++.||
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT~C~k~~~~~~~~C~~~~~~~~~~C~~~V~   82 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVT   82 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCCcEEEEEEEEEEeecCCcCCCChHHCccccCCcceEEEEEEE
Confidence            588999999999999999886  5589999999999 899999999998765                  4668999999


Q ss_pred             EecCCCceEEE
Q 033492          101 EKPWEHFKSLT  111 (118)
Q Consensus       101 ~~PW~~~~~l~  111 (118)
                      ..||.+...|+
T Consensus        83 ~~pw~~~~~vt   93 (98)
T d1kwia_          83 LDQIKDPLDIT   93 (98)
T ss_dssp             CC----CCEEE
T ss_pred             EcCcCCEEEEE
Confidence            99999877664

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0015  Score=40.36  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHHhcCCCe---EEEEEEEEEEEEec--eEEEEEEEEEEeCC---CceeEEEEEEEec
Q 033492           34 PIEDPKEKHVMEIGQFAVTEYNKQSKSAL---KFESVEKGETQVVS--GTNYRLILVVKDGP---STKKFEAVVWEKP  103 (118)
Q Consensus        34 ~i~~~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~c~~~V~~~P  103 (118)
                      +| +++.-...++|+-|+.-+|-..++.+   .+.+|.+|+.++++  |-+|.|++.+.+-.   ....|.++|+...
T Consensus         2 ei-~psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~~~~e~~~~CsA~Vlfp~   78 (98)
T d2bo9b1           2 EI-PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPS   78 (98)
T ss_dssp             BC-CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEEC
T ss_pred             CC-CCcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhcccccccceeEEEEEEcC
Confidence            44 67777888999999999999887765   44799999999996  68999999998863   4558999999953