Citrus Sinensis ID: 033609

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MEGAGSSSVSDNGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHEEEccccccccccccccHHccccc
Coil and Loop (DISEMBL)
megagsssvsdngsssvsgnsssettrvplsEVVSDCVKRWFRDTLkeakggdinmQVLVGQMYFSgygvardaqkgriwisrasrtrssvwkvgekhpgynasdsdsdemkees
Flexible Loop (DISEMBL)
megagsssvsdngsssvsgnsssettrvplsevvsdCVKRWFRDTLkeakggdinmqVLVGQMYFSGYGVARdaqkgriwisrasrtrssvwkvgekhpgynasdsdsdemkees
Low Complexity Region (SEG)
MEGAgsssvsdngsssvsgnsssETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNAsdsdsdEMKEES
Disordered region (IsUnstruct)
******************************SEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS******W***********************
Disordered Region (DISOPRED)
*******************************EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR***W***********************
Disordered Region (DISEMBL)
*****************************LSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPG***************
Disordered Region (DISPRO)
**************************RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKH*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGAGSSSVSDNGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
351725577	100	uncharacterized protein LOC100527831 [Gl	0.852	0.98	0.792	8e-40
449483597	100	PREDICTED: uncharacterized LOC101206121	0.773	0.89	0.842	2e-39
225439584	100	PREDICTED: uncharacterized protein LOC10	0.773	0.89	0.831	6e-39
356506766	100	PREDICTED: uncharacterized protein LOC10	0.852	0.98	0.782	1e-38
357506359	100	hypothetical protein MTR_7g071210 [Medic	0.773	0.89	0.764	1e-35
28393833	157	unknown protein [Arabidopsis thaliana] g	0.947	0.694	0.610	1e-33
30680897	163	uncharacterized protein [Arabidopsis tha	0.947	0.668	0.610	2e-33
388502396	101	unknown [Lotus japonicus]	0.669	0.762	0.844	2e-33
255559591	159	conserved hypothetical protein [Ricinus	0.782	0.566	0.711	5e-33
356567959	159	PREDICTED: uncharacterized protein LOC10	0.791	0.572	0.703	4e-32

>gi|351725577|ref|NP_001238121.1| uncharacterized protein LOC100527831 [Glycine max] gi|255633328|gb|ACU17021.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 89/101 (88%), Gaps = 3/101 (2%)

Query: 15  SSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDA 74
           SSV G  S    RV LSEVV+DCVKRWFRD LKEAK GDINMQVLVGQMY+ GYGV RDA
Sbjct: 3   SSVGGERSE---RVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYYGGYGVPRDA 59

Query: 75  QKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115
           QKGR+W+++ASRTRSSVWKVG+KHPGYNASDSDSDE+KE+S
Sbjct: 60  QKGRVWLTKASRTRSSVWKVGDKHPGYNASDSDSDELKEDS 100

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483597|ref|XP_004156634.1| PREDICTED: uncharacterized LOC101206121 [Cucumis sativus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 84/89 (94%)

Query: 27  RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           RVPLSEVVSDCVKRWF+DTLKEAK GDINMQVLVGQMY+SGYGV RDAQKGRIW+++ASR
Sbjct: 12  RVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRIWMTKASR 71

Query: 87  TRSSVWKVGEKHPGYNASDSDSDEMKEES 115
           +RSSVWKV +KHPGYNASDSDSDE+  +S
Sbjct: 72  SRSSVWKVSDKHPGYNASDSDSDELTRDS 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439584|ref|XP_002265642.1| PREDICTED: uncharacterized protein LOC100243041 isoform 1 [Vitis vinifera] gi|359481191|ref|XP_003632590.1| PREDICTED: uncharacterized protein LOC100243041 [Vitis vinifera]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 85/89 (95%)

Query: 27  RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           RVPLSEVVSDCVKRWF+DTL+EAK GD++MQVLVGQMY+SGYGV RDAQKGR+W++RASR
Sbjct: 12  RVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKGRVWMTRASR 71

Query: 87  TRSSVWKVGEKHPGYNASDSDSDEMKEES 115
           TRSSVWKV +KHPGYNASDSDSDE+K +S
Sbjct: 72  TRSSVWKVSDKHPGYNASDSDSDELKGDS 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506766|ref|XP_003522147.1| PREDICTED: uncharacterized protein LOC100794599 [Glycine max]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 88/101 (87%), Gaps = 3/101 (2%)

Query: 15  SSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDA 74
           SSV G  S    RV LSEVV+DCVKRWFRD LKEAK GDINMQVLVGQMY SGYGV RDA
Sbjct: 3   SSVGGERSG---RVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDA 59

Query: 75  QKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115
           QKGR+W+++AS+ RSSVWKVG+KHPGYNASDSDSDE+KE+S
Sbjct: 60  QKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS 100

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506359|ref|XP_003623468.1| hypothetical protein MTR_7g071210 [Medicago truncatula] gi|355498483|gb|AES79686.1| hypothetical protein MTR_7g071210 [Medicago truncatula]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 81/89 (91%)

Query: 27  RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           R PLS VV+DCVKRWF+DTL+EAK GD+NMQ+LVGQMY SGYGVA+DAQKG++W+++ASR
Sbjct: 12  RFPLSGVVADCVKRWFKDTLREAKAGDVNMQILVGQMYCSGYGVAKDAQKGKLWLTKASR 71

Query: 87  TRSSVWKVGEKHPGYNASDSDSDEMKEES 115
            RSSVWKVG+K PGYNASDSDSDE  E+S
Sbjct: 72  VRSSVWKVGDKRPGYNASDSDSDESNEDS 100

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393833|gb|AAO42324.1| unknown protein [Arabidopsis thaliana] gi|110737142|dbj|BAF00521.1| hypothetical protein [Arabidopsis thaliana]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 86/113 (76%), Gaps = 4/113 (3%)

Query: 1   MEGAGSSSVSDNGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLV 60
           +E AGS S    GS+    + S    RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLV
Sbjct: 49  LEKAGSHS----GSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLV 104

Query: 61  GQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKE 113
           GQMY SGYG+ +D  KGR WI++ASRTRSS W+V +K PGYNASDSDS++ K+
Sbjct: 105 GQMYCSGYGIPKDENKGRAWINKASRTRSSAWQVSDKPPGYNASDSDSNDKKD 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680897|ref|NP_196155.2| uncharacterized protein [Arabidopsis thaliana] gi|332003481|gb|AED90864.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 86/113 (76%), Gaps = 4/113 (3%)

Query: 1   MEGAGSSSVSDNGSSSVSGNSSSETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLV 60
           +E AGS S    GS+    + S    RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLV
Sbjct: 55  LEKAGSHS----GSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLV 110

Query: 61  GQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKE 113
           GQMY SGYG+ +D  KGR WI++ASRTRSS W+V +K PGYNASDSDS++ K+
Sbjct: 111 GQMYCSGYGIPKDENKGRAWINKASRTRSSAWQVSDKPPGYNASDSDSNDKKD 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502396|gb|AFK39264.1| unknown [Lotus japonicus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 73/77 (94%)

Query: 27  RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           RVPLSEVV+DCVKRWF+DTLKEAKGGDINMQVLVGQMY +GYGV +DAQKGRIW+++ASR
Sbjct: 13  RVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPKDAQKGRIWLTKASR 72

Query: 87  TRSSVWKVGEKHPGYNA 103
            RSSVWKVG+K PGYNA
Sbjct: 73  VRSSVWKVGDKRPGYNA 89

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559591|ref|XP_002520815.1| conserved hypothetical protein [Ricinus communis] gi|223539946|gb|EEF41524.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 79/90 (87%)

Query: 26  TRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
            R+PLS VVSDCV+RWF+DTLKEAK GDI+MQVLVGQMYF+GYG+ +D+QKGR WI+RAS
Sbjct: 66  NRLPLSNVVSDCVRRWFQDTLKEAKAGDISMQVLVGQMYFNGYGIPKDSQKGRAWINRAS 125

Query: 86  RTRSSVWKVGEKHPGYNASDSDSDEMKEES 115
           ++R S WKV +K PGY ASDSDSDE K+++
Sbjct: 126 KSRVSAWKVSDKRPGYAASDSDSDEGKDDA 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567959|ref|XP_003552182.1| PREDICTED: uncharacterized protein LOC100779520 [Glycine max]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 75/91 (82%)

Query: 24  ETTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISR 83
           +  R PL++VVSDC KRWF+DTLKEAK GD  MQVLVGQMY+SGYGVARD QKG  WIS+
Sbjct: 64  QQCRTPLAKVVSDCSKRWFQDTLKEAKAGDTTMQVLVGQMYYSGYGVARDPQKGHAWISK 123

Query: 84  ASRTRSSVWKVGEKHPGYNASDSDSDEMKEE 114
           ASR R+SVWK+  K PGY ASDSDS E++E+
Sbjct: 124 ASRNRNSVWKLCGKRPGYRASDSDSCELEEK 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2057227	138	AT2G38450 [Arabidopsis thalian	0.695	0.579	0.743	1.3e-29
TAIR|locus:2153559	163	AT5G05360 [Arabidopsis thalian	0.756	0.533	0.643	1.2e-28

TAIR|locus:2057227 AT2G38450 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/82 (74%), Positives = 72/82 (87%)

Query:    24 ETTR--VPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWI 81
             ETTR  VPLS VVSDC KRWF+DTL+EAK G+I MQVL+GQMY+SGYGV +DA+KGR+WI
Sbjct:    49 ETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWI 108

Query:    82 SRASRTRSSVWKVGEKHPGYNA 103
             ++ASR RSSVWKV +K PGYNA
Sbjct:   109 TKASRVRSSVWKVIDKRPGYNA 130

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153559 AT5G05360 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 56/87 (64%), Positives = 69/87 (79%)

Query:    27 RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
             RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMY SGYG+ +D  KGR WI++ASR
Sbjct:    77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKASR 136

Query:    87 TRSSVWKVGEKHPGYNAXXXXXXEMKE 113
             TRSS W+V +K PGYNA      + K+
Sbjct:   137 TRSSAWQVSDKPPGYNASDSDSNDKKD 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115        90   0.00091  102 3  11 22  0.37    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  118 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Total cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Start:  Thu May  9 21:12:38 2013   End:  Thu May  9 21:12:38 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	2e-04
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	5e-04
smart00671	36	smart00671, SEL1, Sel1-like repeats	7e-04

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
             +R   K A+ G+ + Q+L+G+MY  G GV RD +K   W  +A+ 
Sbjct: 176 YLYR---KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHP 99
            W+R     A  G       +G MY +G GV  D  K   +  +A++  +    +     
Sbjct: 98  DWYR---CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154

Query: 100 GYNASDSDSD 109
           G         
Sbjct: 155 GLAYLSGLQA 164

Length = 292

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 34.5 bits (80), Expect = 7e-04
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 57 QVLVGQMYFSGYGVARDAQKGRIWISRA 84
          Q  +GQMY  G GV +D +K   +  +A
Sbjct: 4  QYNLGQMYEYGLGVPKDLEKALEYYKKA 31

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	99.13
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.08
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	99.07
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.83
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.52
KOG4014	248	consensus Uncharacterized conserved protein (conta	97.39
KOG4014	248	consensus Uncharacterized conserved protein (conta	96.54
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.65
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.94
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.15
TIGR02552	135	LcrH_SycD type III secretion low calcium response	88.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.59
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	87.38
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.04
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.74
TIGR02552	135	LcrH_SycD type III secretion low calcium response	82.06
PRK15359	144	type III secretion system chaperone protein SscB;	80.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	80.35

>smart00671 SEL1 Sel1-like repeats

Probab=99.13  E-value=1e-10  Score=64.93  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033609           54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS   89 (115)
Q Consensus        54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~   89 (115)
                      +.||+.||.||..|.|+++|..+|+.||++||++|+
T Consensus         1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            368999999999999999999999999999999986

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.08  E-value=3e-10  Score=88.06  Aligned_cols=59  Identities=29%  Similarity=0.418  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ..|..||.   +++.++++.||++||.||..|.||++|+.+|++||++||++|+..+.+..+
T Consensus       172 ~~A~~~~~---~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~  230 (292)
T COG0790         172 KKALYLYR---KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG  230 (292)
T ss_pred             HhHHHHHH---HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36899999   999999999999999999999999999999999999999999976666555

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=99.07  E-value=1.6e-10  Score=65.29  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=33.4

Q ss_pred             HHHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHhcCC
Q 033609           54 INMQVLVG--QMYFSGY-GVARDAQKGRIWISRASRTRS   89 (115)
Q Consensus        54 ~~Aq~~LG--~mY~~G~-Gv~kD~~kA~~Wl~kAA~~G~   89 (115)
                      +.||++||  .||..|. |+++|+.+|++||++|+++||
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            57999999  9999999 899999999999999999996

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.05  E-value=4.7e-10  Score=86.97  Aligned_cols=60  Identities=22%  Similarity=0.260  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchh---hhccc
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVW---KVGEK   97 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~---~~~~~   97 (115)
                      ...|..||+   ++++.|++.+|++||.||..|.||++|+.+|++||++||++|+..+   .+..+
T Consensus        93 ~~~A~~~~~---~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~  155 (292)
T COG0790          93 KTKAADWYR---CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLG  155 (292)
T ss_pred             HHHHHHHHH---HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            466899999   9999999999999999999999999999999999999999999987   65555

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.83  E-value=8.2e-09  Score=88.88  Aligned_cols=61  Identities=16%  Similarity=0.117  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ....|++||.   .||+.|++.|+++|+.||..|.||++|..+|+.||++||++|++.+.+.++
T Consensus       343 d~~~A~~yy~---~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~  403 (552)
T KOG1550|consen  343 DYRRAFEYYS---LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLG  403 (552)
T ss_pred             cHHHHHHHHH---HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHH
Confidence            3457999999   999999999999999999999999999999999999999999877665544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.52  E-value=3e-07  Score=79.30  Aligned_cols=62  Identities=23%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHh-------cCCchhhhcccCC
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSG-YGVARDAQKGRIWISRASR-------TRSSVWKVGEKHP   99 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G-~Gv~kD~~kA~~Wl~kAA~-------~G~~~~~~~~~~~   99 (115)
                      ...+..||+   .+|+.|+..||+.+|.||+.| .||.+|+++|+.||++|++       +|++.+....++.
T Consensus       228 ~~~a~~~~~---~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~  297 (552)
T KOG1550|consen  228 LSEAFKYYR---EAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRL  297 (552)
T ss_pred             hhHHHHHHH---HHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence            356899999   999999999999999999999 9999999999999999999       8988877777643

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=97.39  E-value=0.00093  Score=52.72  Aligned_cols=48  Identities=23%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|.++--   ||++.+++.|+.++.+||..|.||++|..+|..+-.+|-+
T Consensus       185 dka~qfa~---kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e  232 (248)
T KOG4014|consen  185 DKALQFAI---KACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE  232 (248)
T ss_pred             HHHHHHHH---HHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence            34555555   9999999999999999999999999999999999888865

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=96.54  E-value=0.0037  Score=49.39  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------C--CCc----------CCHHHHHHHHHHHHhcCCchhhh
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSG--------Y--GVA----------RDAQKGRIWISRASRTRSSVWKV   94 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G--------~--Gv~----------kD~~kA~~Wl~kAA~~G~~~~~~   94 (115)
                      ...|.+++.   ++++.++..|+|+|.-||..|        .  |-+          +|..+|+++-.+|++.+++-+-.
T Consensus       128 ~~Ka~~y~t---raCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCA  204 (248)
T KOG4014|consen  128 SEKAERYMT---RACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACA  204 (248)
T ss_pred             cHHHHHHHH---HhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHh
Confidence            456899999   999999999999999999988        1  555          89999999999999999987655


Q ss_pred             cccC
Q 033609           95 GEKH   98 (115)
Q Consensus        95 ~~~~   98 (115)
                      +..|
T Consensus       205 N~Sr  208 (248)
T KOG4014|consen  205 NVSR  208 (248)
T ss_pred             hHHH
Confidence            5443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.03  E-value=0.14  Score=27.06  Aligned_cols=30  Identities=13%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus         1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            4678999999995    78999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.90  E-value=0.23  Score=29.95  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|...|+   ++....  ++.+.+.||.+|.    ...++.+|+.+|+++.+..
T Consensus        13 ~~~A~~~~~---~~l~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen   13 YDEAIAAFE---QALKQDPDNPEAWYLLGRILY----QQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHH---HHHCCSTTHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC
Confidence            467888888   666554  8899999999999    4679999999999997643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=92.65  E-value=0.42  Score=28.97  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           34 VSDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      ..+.|..+|+   ++.+.  .++.+.+++|.+|..   ..+++.+|+..|++|.+.
T Consensus        18 ~~~~A~~~~~---~ai~~~p~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen   18 DYEEAIEYFE---KAIELDPNNAEAYYNLGLAYMK---LGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHH---HHHHHSTTHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHc
Confidence            3467888999   55544  588999999999985   113799999999999763

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.07  E-value=0.8  Score=24.28  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.+.+++|.+|.    ...++.+|+..|++|.+.
T Consensus         1 a~~~~~~g~~~~----~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYF----QLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH----HhCCchHHHHHHHHHHHH
Confidence            467899999999    478999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.94  E-value=0.81  Score=28.41  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHH-HCCC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           35 SDCVKRWFRDTLKEA-KGGD-----INMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA-~~Gd-----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      .+.|..+|++.++-. ..|+     +.+.++||.+|..    ..|+++|+.+|++|.+
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   21 YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            456888888555442 2332     5677899999884    6689999999999975

...

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.15  E-value=0.97  Score=24.94  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 033609           56 MQVLVGQMYFSGYGVARDAQKGRIWISRAS   85 (115)
Q Consensus        56 Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA   85 (115)
                      |..+||.+|..    ..|+++|+.+|++|.
T Consensus         1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            46789999995    679999999999965

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=88.18  E-value=2.9  Score=28.08  Aligned_cols=45  Identities=7%  Similarity=-0.096  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           37 CVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        37 ~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .|..+|+   ++...  .++...+.+|.+|..    ..++.+|+.||+++.+..
T Consensus        69 ~A~~~~~---~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        69 EAIDAYA---LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHH---HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence            3455555   33322  245666666666663    446666666666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.59  E-value=1.4  Score=23.67  Aligned_cols=29  Identities=7%  Similarity=-0.011  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.++.+||.+|..    ..++.+|..|++++.+
T Consensus         2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRA----QGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence            3578999999995    5799999999999975

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=87.38  E-value=0.67  Score=25.18  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCC
Q 033609           34 VSDCVKRWFRDTLKEAKGGD   53 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd   53 (115)
                      ....|++||+   +||++||
T Consensus        23 d~~~A~~~~~---~Aa~~g~   39 (39)
T PF08238_consen   23 DYEKAFKWYE---KAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHH---HHHHTT-
T ss_pred             cccchHHHHH---HHHHccC
Confidence            4778999999   9999986

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.15  E-value=0.81  Score=23.67  Aligned_cols=29  Identities=10%  Similarity=0.229  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +|+|++|.+|..    ..+..+|+..|++..++
T Consensus         1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    1 DALYRLARCYYK----LGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence            488999999996    46999999999987654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=87.04  E-value=1.9  Score=25.81  Aligned_cols=51  Identities=12%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           33 VVSDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        33 ~~~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      ...+.|...|+   ++..  -++..+.+.||.+|..    ..++.+|..++++.......
T Consensus         5 ~~~~~A~~~~~---~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    5 GDYDEAIELLE---KALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             THHHHHHHHHH---HHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTT
T ss_pred             cCHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcC
Confidence            34567889999   5544  3699999999999995    57999999999988765543

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.26  E-value=2.3  Score=22.31  Aligned_cols=29  Identities=14%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.+.+|.+|..    ..|+.+|...|+++.+.
T Consensus         2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQ----LGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHH----TTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            567899999996    66999999999999763

...

>smart00028 TPR Tetratricopeptide repeats

Probab=82.74  E-value=1.9  Score=20.24  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.+.+|.+|..    ..++.+|..+|+++.+.
T Consensus         2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLK----LGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence            356788888884    56899999999988754

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=82.06  E-value=5.7  Score=26.58  Aligned_cols=48  Identities=8%  Similarity=-0.069  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      +.|..+|+   ++..  -.++.+.+.+|.+|..    ..++.+|+.+|+++......
T Consensus        34 ~~A~~~~~---~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552        34 DEALKLFQ---LLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             HHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCC
Confidence            55788888   5544  3578999999999984    56889999999999776543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=80.49  E-value=8  Score=27.36  Aligned_cols=46  Identities=7%  Similarity=-0.022  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++..  -+++.+.++||.+|..    -.++.+|+..|++|.+..
T Consensus        75 ~~A~~~y~---~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         75 TTAINFYG---HALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHH---HHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            44667777   4444  4577888888887774    457778888888887643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=80.35  E-value=7.6  Score=29.16  Aligned_cols=48  Identities=10%  Similarity=0.057  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      +.|..+|+   ++.+.  .++.+.++||..+..    ..|+.+|+.+|+++.+...+
T Consensus       127 ~~A~~~l~---~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        127 PQTREMID---KALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHH---HHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            44555665   44443  366777777777763    45777777777777665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	7e-07
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	9e-07
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	5e-06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	6e-06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-05
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-06
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	5e-06
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	7e-05
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-04
1klx_A	138	Cysteine rich protein B; structural genomics, heli	7e-06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	3e-05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	4e-04

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
            WFR   + A+ G    + ++G  Y +G GV +D  +  IW  +A
Sbjct: 64  DWFR---RAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           +W+R   K A  GD   Q+ +  MY+ G GV +D  + R+  S+++ 
Sbjct: 208 QWYR---KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 40 RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
             +   ++A+ G+   Q+ +G  YF G    +D  +   W  RA
Sbjct: 28 EQLK---QKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRA 69

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
             F    + A+ G+   Q  +G +   G   A++  K   W  ++
Sbjct: 244 VLFS---QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
            W+    K A+ G++     +G MY  G GV R+      W  ++
Sbjct: 172 EWYS---KAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 36  DCVK--RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           D  +   W++   K A  G    Q  +G MY  G GV  D  +   W   A
Sbjct: 94  DYAQAVIWYK---KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
            WFR   K A  G+   Q  +G     G GV +D Q+  IW+ +A+
Sbjct: 352 EWFR---KAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           +WFR     A+ G  + Q  +G  YF G GV RD    R W S+A
Sbjct: 136 KWFR---LAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
            W R   K A+ G    QV +G++Y+ G GV RD  +   W   AS
Sbjct: 388 IWMR---KAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 40 RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
          ++F    K     + +    +G +Y+ G GV ++ +K   + ++A
Sbjct: 27 KYFE---KACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
             +    K  +  +      +G M ++G GV R+ ++      + 
Sbjct: 207 ARYS---KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
            ++    K       N   L+G +Y+SG GV+++  K   + S+A
Sbjct: 63  SFYA---KACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           +++    K            +G +Y  G  V RD +K   + ++A
Sbjct: 99  QYYS---KACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
             +    K     D       G MY  G G  ++ ++     S+A
Sbjct: 171 ASYD---KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
            +F    K     D +   ++G +Y +G G  +D +K      +A
Sbjct: 135 EYFT---KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
                    A+ G  +    + Q++  G G   D     ++   A 
Sbjct: 343 DHLL---TAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           ++               ++L+G++Y+ G  V  DA+       +A
Sbjct: 272 KYLD---NGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKA 313

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
             F    K            +GQ+Y  GY      QK    +  A
Sbjct: 308 AHFE---KAVGREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTA 348

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 4/41 (9%), Positives = 11/41 (26%), Gaps = 3/41 (7%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIW 80
              +   K    G+ N  + +  +Y        +    +  
Sbjct: 95  SLLK---KAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQI 132

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 41.3 bits (98), Expect = 7e-06
 Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           +++    K     D +  +++G   ++G GV ++ ++      +A
Sbjct: 82  QYYS---KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 40 RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
          ++     K  +    N    +G  Y +G  V +D +K   + S+A
Sbjct: 46 QYLS---KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 40  RWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84
           +      K  + G  + ++++ ++  +    A D       +  A
Sbjct: 74  QLAE---KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA 115

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 40  RWFRDTLKEAKGGD----INMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
              +     A+  +    ++ Q+L+G +Y SG     D  K   +   +S
Sbjct: 110 TLLQ---DAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.43
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.38
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.02
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.42
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	93.86
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	93.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.19
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.47
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	92.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	92.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	92.02
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	91.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	91.2
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	91.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	91.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	90.92
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	90.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	90.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	90.42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	90.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	90.08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	90.05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	89.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	89.93
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	89.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	89.85
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	89.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	89.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	89.41
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	89.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	89.29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	89.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	89.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	88.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	88.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	88.8
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	88.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	88.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	88.37
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	88.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	87.93
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	87.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	87.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	87.89
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	87.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	87.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	87.59
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	86.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	86.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	86.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	86.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	86.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	86.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	85.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	85.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	85.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	85.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	85.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	85.29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	84.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	84.73
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	84.09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	83.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	83.19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	83.06
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	82.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	82.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	82.22
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	81.99
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	81.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	81.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	81.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	81.2
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	80.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	80.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	80.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	80.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	80.24

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.43  E-value=3.6e-13  Score=93.04  Aligned_cols=57  Identities=18%  Similarity=0.131  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           38 VKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        38 A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      |+.||+   ++++.|++.|+++||.+|..|.||++|+.+|+.||++|+++|++.+.++++
T Consensus        44 A~~~~~---~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg  100 (138)
T 1klx_A           44 LFQYLS---KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG  100 (138)
T ss_dssp             HHHHHH---HHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHH---HHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            555555   555555555555555555555555555555555555555555555444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.38  E-value=9.3e-13  Score=90.94  Aligned_cols=64  Identities=14%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhcccC
Q 033609           32 EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKH   98 (115)
Q Consensus        32 ~~~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~~   98 (115)
                      ......|+.||+   ++++.|++.|+++||.+|..|.||++|+.+|++||++|+++|++.+...+++
T Consensus        74 ~~d~~~A~~~~~---~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~  137 (138)
T 1klx_A           74 KKDLRKAAQYYS---KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN  137 (138)
T ss_dssp             CCCHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred             CccHHHHHHHHH---HHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence            345678999999   9999999999999999999999999999999999999999999998887764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=3.6e-10  Score=81.82  Aligned_cols=61  Identities=10%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC----chhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS----SVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~----~~~~~~~~   97 (115)
                      ....|+.||+   ++++.|++.|+++||.+|..|.||++|+.+|+.||++|+++|+    +.+.+.++
T Consensus        68 ~~~~A~~~~~---~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg  132 (212)
T 3rjv_A           68 DYPQARQLAE---KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG  132 (212)
T ss_dssp             CHHHHHHHHH---HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence            3455677777   7777777777777777777777777777777777777777776    45444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.02  E-value=3.1e-10  Score=91.38  Aligned_cols=60  Identities=12%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhcc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGE   96 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~   96 (115)
                      ....|+.||+   +++++|++.|+++||.||..|.||++|+.+|+.||++|+++|+..+...+
T Consensus       337 d~~~A~~~~~---~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l  396 (452)
T 3e4b_A          337 YPQKALDHLL---TAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA  396 (452)
T ss_dssp             CHHHHHHHHH---HHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CHHHHHHHHH---HHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4456777777   77777777777777777777777777777777777777777777655443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=5.4e-10  Score=80.86  Aligned_cols=61  Identities=11%  Similarity=0.082  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCC--CcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKG-GDINMQVLVGQMYFSGYG--VARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~-Gd~~Aq~~LG~mY~~G~G--v~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ....|+.||+   ++++. +++.|+++||.+|..|.|  |++|+.+|+.||++|+++|+..+....+
T Consensus       144 d~~~A~~~~~---~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~  207 (212)
T 3rjv_A          144 DDVKASEYFK---GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD  207 (212)
T ss_dssp             CHHHHHHHHH---HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4567999999   99998 999999999999999988  9999999999999999999988765543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.97  E-value=6.3e-10  Score=89.55  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ....|+.||+   +++ .|++.|+++||.||..|.||++|+.+|+.||++|+++|++.+.+.++
T Consensus       302 d~~~A~~~~~---~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg  361 (452)
T 3e4b_A          302 DAKAAEAHFE---KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIA  361 (452)
T ss_dssp             CHHHHHHHHH---TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             CHHHHHHHHH---HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHH
Confidence            3455677777   777 77777777777777777777777777777777777777776665555

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.81  E-value=9.4e-09  Score=81.93  Aligned_cols=61  Identities=23%  Similarity=0.389  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhcccC
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKH   98 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~~   98 (115)
                      .+.|+.||+   ++++.|++.|++.||.+|..|.||++|+.+|+.||++|+++|++.+.+.++.
T Consensus        59 ~~~A~~~~~---~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~  119 (490)
T 2xm6_A           59 LTQAMDWFR---RAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGV  119 (490)
T ss_dssp             HHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            456888998   8899999999999999999999999999999999999999998887776663

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.77  E-value=1.8e-08  Score=80.35  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ..+.|..||+   ++++.|++.++++||.+|..|.||++|+.+|+.||++|+++|++.+.+.++
T Consensus       346 ~~~~A~~~~~---~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg  406 (490)
T 2xm6_A          346 EHKKAVEWFR---KAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4567899999   999999999999999999999999999999999999999999988776665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=1.3e-07  Score=68.81  Aligned_cols=62  Identities=13%  Similarity=0.042  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhcccCCC
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPG  100 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~~~~  100 (115)
                      +.|..||+   ++++.+++.++++||.+|..|.|+.+|+.+|+.||++|++.|+..+.....+..
T Consensus       203 ~~A~~~~~---~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~  264 (273)
T 1ouv_A          203 KEALARYS---KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLK  264 (273)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHH---HHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44556666   666666666666666666666666666666666666666666655554444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.42  E-value=6.8e-07  Score=64.93  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      .+.|..||+   ++++.+++.++++||.+|..|.|+..|+.+|+.||++|++.+++.+.+.++
T Consensus        58 ~~~A~~~~~---~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg  117 (273)
T 1ouv_A           58 LKKAASFYA---KACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG  117 (273)
T ss_dssp             HHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence            345666777   777777777777777777777777777777777777777766655544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.60  E-value=0.13  Score=30.08  Aligned_cols=47  Identities=13%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++.+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        25 ~~~A~~~~~---~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A           25 YDEAIEYYQ---KALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence            356888999   66554  588999999999985    569999999999998763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=93.86  E-value=0.16  Score=33.88  Aligned_cols=54  Identities=15%  Similarity=0.063  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVG   95 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~   95 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+.....+.+.
T Consensus       123 ~~~A~~~~~---~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a~~~  178 (184)
T 3vtx_A          123 HDKAIEAYE---KTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKAKYE  178 (184)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHHHHC
T ss_pred             chhHHHHHH---HHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCHHHH
Confidence            356788888   55543  588999999999884    5689999999999988764444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=93.49  E-value=0.19  Score=31.27  Aligned_cols=46  Identities=7%  Similarity=0.046  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+.
T Consensus        23 ~~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A           23 ASRALALFE---ELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             HHHHHHHHH---HHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            467889999   66554  578999999999985    56899999999999753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.19  E-value=0.12  Score=33.05  Aligned_cols=31  Identities=16%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      ++.-++.||..++.    .+|+.+|+.||++|.++
T Consensus         4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~   34 (104)
T 2v5f_A            4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQ   34 (104)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHh
Confidence            45678999999984    78999999999999875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.47  E-value=0.13  Score=37.12  Aligned_cols=51  Identities=10%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc-CCCCcC------CHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFS-GYGVAR------DAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~-G~Gv~k------D~~kA~~Wl~kAA~~G   88 (115)
                      .+.|+..|+   ++.+..  +..|.++||..|.. |.-++.      ++.+|+..|++|.+..
T Consensus        62 ~~eAi~~le---~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           62 IQEAITKFE---EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            357888999   777765  89999999999974 332444      8999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.23  E-value=0.42  Score=28.70  Aligned_cols=47  Identities=15%  Similarity=0.004  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHH-HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDIN-MQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~-Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++. +.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        16 ~~~A~~~~~---~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A           16 IENALQALE---EFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHH---HHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            466888998   65544  5778 99999999984    568999999999998765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=92.20  E-value=0.41  Score=31.88  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+..|++|.+..
T Consensus        47 ~~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           47 YDLAKKYIC---TYINVQERDPKAHRFLGLLYEL----EENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhC
Confidence            356788888   65554  588899999998884    568889999999888754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=92.04  E-value=0.59  Score=28.02  Aligned_cols=47  Identities=2%  Similarity=-0.167  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  -.++.+.+++|.+|..    ..++.+|+.+|++|.+..
T Consensus        20 ~~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A           20 YREAVHCYD---QLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            466888999   6554  3588999999999985    569999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=92.02  E-value=0.59  Score=27.59  Aligned_cols=48  Identities=6%  Similarity=0.005  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS   89 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~   89 (115)
                      .+.|..+|+   ++...  .+..+.+.+|.+|..    ..++.+|+.+|+++.+...
T Consensus        22 ~~~A~~~~~---~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A           22 YTESIDLFE---KAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHH---HHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCc
Confidence            456888888   65544  578899999999884    4589999999999987653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.62  E-value=0.52  Score=30.58  Aligned_cols=46  Identities=11%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+.
T Consensus        24 ~~~A~~~y~---~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~   71 (127)
T 4gcn_A           24 FEKAHVHYD---KAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHh
Confidence            467899999   66654  688999999999995    66999999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=91.22  E-value=0.51  Score=30.70  Aligned_cols=44  Identities=14%  Similarity=-0.066  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+   ++...  .++.+.+.||.+|..    ..++.+|+.+|++|..
T Consensus        35 ~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           35 DDAQKIFQ---ALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHh
Confidence            34555555   33322  345555555555542    3355555555555554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=91.20  E-value=0.96  Score=26.60  Aligned_cols=47  Identities=6%  Similarity=-0.063  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHcCCCCc-CCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--G--DINMQVLVGQMYFSGYGVA-RDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--G--d~~Aq~~LG~mY~~G~Gv~-kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .  +..+.+.||.+|..    . .++.+|+.+|+++....
T Consensus        56 ~~~A~~~~~---~a~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           56 YEEAVDCYN---YVINVIEDEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHHHH---HHHHTSCCTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHH---HHHHhCcccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence            356888999   66665  3  78999999999984    4 68999999999998765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=91.18  E-value=0.65  Score=30.18  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      ++.+.++||.+|..    ..++.+|+.+|++|.+
T Consensus        80 ~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           80 FIKGYIRKAACLVA----MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            44455555554442    2344555555555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.14  E-value=0.67  Score=29.42  Aligned_cols=51  Identities=8%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           34 VSDCVKRWFRDTLKEAKG------GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~------Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ....|..||+..++....      ..+.....||.+|..    ..++.+|+..+++|.+..
T Consensus        20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A           20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcC
Confidence            356799999944444322      356788999999984    558999999999998643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=91.12  E-value=0.62  Score=28.86  Aligned_cols=45  Identities=11%  Similarity=-0.048  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++...  .++.+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        36 ~~A~~~~~---~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           36 DAALPHLR---AALDFDPTYSVAWKWLGKTLQG----QGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            56778888   55443  578888999998884    56888999999988653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=90.92  E-value=0.53  Score=31.43  Aligned_cols=45  Identities=7%  Similarity=-0.027  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+.+|++|.+.
T Consensus        72 ~~A~~~~~---~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           72 DLAIHSYS---YGAVMDIXEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHH---HHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            34555666   44332  456666666666653    44666666666666543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=90.82  E-value=1.1  Score=27.37  Aligned_cols=46  Identities=9%  Similarity=-0.025  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...  .+..+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        33 ~~A~~~~~---~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           33 PQAMKHYT---EAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHH---HHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            34667777   55544  367888888888763    557888888888887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=90.68  E-value=0.75  Score=30.34  Aligned_cols=44  Identities=7%  Similarity=-0.099  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+.+|+++.+
T Consensus        62 ~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           62 EKAAEDAE---LATVVDPKYSKAWSRLGLARFD----MADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence            34566666   44332  456667777776663    4466777777776654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=90.42  E-value=0.83  Score=29.64  Aligned_cols=46  Identities=7%  Similarity=-0.065  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+.+|+++.+.
T Consensus        68 ~~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           68 YEQALQSYS---YGALMDINEPRFPFHAAECHLQ----LGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHH---HHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            356888999   66554  688999999999985    56999999999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=90.35  E-value=0.81  Score=30.16  Aligned_cols=47  Identities=6%  Similarity=-0.106  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        27 ~~~A~~~~~---~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~   75 (164)
T 3sz7_A           27 YSKAIDLYT---QALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVD   75 (164)
T ss_dssp             HHHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            356888888   65554  589999999999985    569999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=90.08  E-value=1.1  Score=26.65  Aligned_cols=30  Identities=13%  Similarity=0.246  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      ++.+.+.||.+|..    ..++.+|+.+|+++.+
T Consensus        76 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           76 NAEAWYNLGNAYYK----QGDYDEAIEYYQKALE  105 (125)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            44455555555442    2345555555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=90.05  E-value=1.4  Score=26.77  Aligned_cols=47  Identities=9%  Similarity=-0.163  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  -.++.+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        66 ~~~A~~~~~---~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           66 FQLALKDCE---ECIQLEPTFIKGYTRKAAALEA----MKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhC
Confidence            356888888   5554  3578999999999985    569999999999998764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=89.96  E-value=1  Score=27.73  Aligned_cols=46  Identities=7%  Similarity=0.071  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GD---INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd---~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...  .+   +.+.+.||.+|..    ..++.+|+.+|+++....
T Consensus        56 ~~A~~~~~---~~~~~~p~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           56 QLAEAQFR---DLVSRYPTHDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHH---HHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH---HHHHHCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence            55777887   55443  34   7788888888874    457888888888887653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=89.93  E-value=0.89  Score=28.46  Aligned_cols=45  Identities=7%  Similarity=0.097  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|+++...
T Consensus        44 ~~A~~~~~---~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           44 RKAEAVLA---NGVKQFPNHQALRVFYAMVLYN----LGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            45777887   55543  578888888888774    55788888888888765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=89.89  E-value=1.1  Score=28.01  Aligned_cols=30  Identities=7%  Similarity=-0.193  Sum_probs=14.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      ++.+.+++|.+|..    ..++.+|+.+|++|.+
T Consensus        37 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~   66 (126)
T 3upv_A           37 DARGYSNRAAALAK----LMSFPEAIADCNKAIE   66 (126)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            44455555555442    2344555555555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=89.85  E-value=0.73  Score=32.29  Aligned_cols=46  Identities=11%  Similarity=0.167  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+..++..  .++.+.++||.+|..    ..++.+|+.+|+++.+.
T Consensus       135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          135 DKAEASLKQALALE--DTPEIRSALAELYLS----MGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--cchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            34555555332222  455666666666553    34566666666666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.69  E-value=1.1  Score=28.55  Aligned_cols=49  Identities=10%  Similarity=-0.060  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      .+.|..+|+   ++..  -.++.|.+.||.+++.    ..++.+|+..|++..++...
T Consensus        25 ~~~A~~~l~---~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           25 TDEVSLLLE---QALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHH---HHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            456888888   5544  4699999999999995    77999999999999887644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=89.65  E-value=0.66  Score=31.81  Aligned_cols=44  Identities=11%  Similarity=0.039  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+..|++|.+
T Consensus        53 ~eA~~~~~---~al~~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           53 EEAEVFFR---FLCIYDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHh
Confidence            44556665   44333  355666666666552    3456666666666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=89.45  E-value=0.35  Score=30.46  Aligned_cols=46  Identities=9%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKGG-----DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~G-----d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...+     ++.+.+.||.+|..    ..++.+|+.+|++|.+..
T Consensus         7 ~~A~~~~~---~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   57 (117)
T 3k9i_A            7 AQAVPYYE---KAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQF   57 (117)
T ss_dssp             CCCHHHHH---HHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            34778898   777663     56899999999984    669999999999998764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=89.41  E-value=1  Score=29.16  Aligned_cols=47  Identities=9%  Similarity=-0.055  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.+++|.+|..    -.++.+|+.+|++|.+..
T Consensus        29 ~~~A~~~~~---~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~   77 (126)
T 4gco_A           29 YPTAMRHYN---EAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLD   77 (126)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhh
Confidence            456888999   66554  589999999999985    569999999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=89.33  E-value=1.5  Score=25.85  Aligned_cols=45  Identities=2%  Similarity=-0.332  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++...  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        55 ~~A~~~~~---~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           55 QKAYEDGC---KTVDLKPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH---HHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHc
Confidence            34555555   33332  356666666666653    34666666666666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=89.29  E-value=1.3  Score=27.65  Aligned_cols=47  Identities=4%  Similarity=-0.112  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+.+|+++.+..
T Consensus        54 ~~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           54 FPEAIADCN---KAIEKDPNFVRAYIRKATAQIA----VKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHhC
Confidence            356888888   55544  578999999999985    569999999999998765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=89.16  E-value=1.2  Score=26.86  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++.+.+.+|.+|..    ..++.+|+.+|+++....
T Consensus        20 ~~~A~~~~~---~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~   68 (131)
T 1elr_A           20 FDTALKHYD---KAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVG   68 (131)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhc
Confidence            456888898   66554  578999999999984    669999999999998753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=89.14  E-value=1.2  Score=27.55  Aligned_cols=44  Identities=7%  Similarity=0.096  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           38 VKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        38 A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +..+|+   ++...  .++.+.+.||.+|..    ..++.+|+.+|++|.+..
T Consensus         4 a~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   49 (115)
T 2kat_A            4 ITERLE---AMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFD   49 (115)
T ss_dssp             HHHHHH---HHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH---HHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence            566777   66554  589999999999984    569999999999998764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=88.92  E-value=1.3  Score=28.42  Aligned_cols=47  Identities=9%  Similarity=-0.101  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++.+.+.||.+|..    ..++.+|+..|++|.+..
T Consensus        33 ~~~A~~~~~---~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~   81 (121)
T 1hxi_A           33 LAEAALAFE---AVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLD   81 (121)
T ss_dssp             HHHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            356888888   66554  589999999999984    568999999999998864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.87  E-value=1.2  Score=27.79  Aligned_cols=47  Identities=9%  Similarity=-0.072  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGGD-----INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd-----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+...     ..+.+++|.+|..    ..++.+|+.+|+++.+..
T Consensus        44 ~~~A~~~~~---~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           44 YGGALAAYT---QALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHH---HHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH---HHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhC
Confidence            677888888   6665542     6778888888774    557888888888887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=88.80  E-value=1.2  Score=30.48  Aligned_cols=48  Identities=8%  Similarity=-0.000  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS   89 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~   89 (115)
                      .+.|..+|+   ++...  .++.+.++||.+|..    -.++.+|+..|++|.+...
T Consensus        86 ~~~Ai~~~~---~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A           86 FQQAADLYA---VAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHH---HHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHH---HHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence            356888998   66554  689999999999984    5699999999999987653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=88.63  E-value=1.3  Score=29.04  Aligned_cols=46  Identities=7%  Similarity=-0.099  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++..  -.++.+.+++|.+|..    -.++.+|+.+|++|.+..
T Consensus        80 ~~A~~~~~---~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           80 HEAEETSS---EVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcC
Confidence            45777888   5444  4689999999999984    569999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=88.54  E-value=1.7  Score=25.80  Aligned_cols=47  Identities=13%  Similarity=0.204  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .+..+.+.+|.+|..    ..++.+|+.+|+++....
T Consensus        25 ~~~A~~~~~---~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A           25 YDEAIEYYQ---KALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC
Confidence            356788888   55443  578999999999985    569999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=88.37  E-value=1.6  Score=27.13  Aligned_cols=30  Identities=13%  Similarity=0.218  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      ++.+.+.||.+|..    ..++.+|+.+|+++.+
T Consensus        76 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           76 SVKAHFFLGQCQLE----MESYDEAIANLQRAYS  105 (137)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            45555555555553    3355555555555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=88.27  E-value=1.5  Score=25.82  Aligned_cols=47  Identities=13%  Similarity=-0.028  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++...  .++.+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        20 ~~~A~~~~~---~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   68 (118)
T 1elw_A           20 IDDALQCYS---EAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLK   68 (118)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhC
Confidence            456888888   65443  589999999999984    679999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=87.93  E-value=1.7  Score=29.76  Aligned_cols=49  Identities=10%  Similarity=0.032  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+..++.....+..+.+++|.+|..    ..++.+|+.+|++|.+..
T Consensus        24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A           24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhC
Confidence            3455555522222111345555566666553    345666666666665443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=87.91  E-value=1.8  Score=26.96  Aligned_cols=47  Identities=6%  Similarity=-0.084  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  -.++.+.++||.+|..    ..++.+|+.+|+++....
T Consensus        25 ~~~A~~~~~---~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B           25 YPEAAACYG---RAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            356788888   5554  3578999999999984    679999999999998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=87.89  E-value=1.5  Score=29.73  Aligned_cols=46  Identities=9%  Similarity=-0.031  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++..  -.++.+.+++|.+|..    ..++.+|+.+|++|.+..
T Consensus       105 ~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A          105 PKAIDHAS---KVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH---HHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHC
Confidence            45778888   4443  4688999999999984    669999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=87.89  E-value=0.95  Score=27.32  Aligned_cols=49  Identities=8%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GD----INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+..++....  .+    ..+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            5577888844433321  12    8899999999985    569999999999998864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=87.78  E-value=1.2  Score=30.86  Aligned_cols=47  Identities=4%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|+++.+..
T Consensus        70 ~~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  118 (208)
T 3urz_A           70 YDKAYLFYK---ELLQKAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLE  118 (208)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            356888998   66654  589999999999984    679999999999998754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=87.74  E-value=1.6  Score=28.96  Aligned_cols=47  Identities=9%  Similarity=-0.107  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  -.++.+.+.||.+|..    ..++.+|+.+|++|....
T Consensus        37 ~~~A~~~~~---~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           37 YEDAHXVFQ---ALCVLDHYDSRFFLGLGACRQA----MGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHH---HHHHcCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence            356788888   6554  4589999999999984    569999999999998753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=87.59  E-value=2.1  Score=25.63  Aligned_cols=45  Identities=7%  Similarity=-0.105  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++..  ..++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        63 ~~A~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           63 AGAVQDCE---RAICIDPAYSKAYGRMGLALSS----LNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHhcCccCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence            34555555   3333  2456666666666663    34666777777666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=86.81  E-value=3.3  Score=24.56  Aligned_cols=47  Identities=13%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  ..+..+.+.+|.+|..    ..++.+|+.+|+++....
T Consensus        51 ~~~A~~~~~---~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           51 YDEAIEYYQ---KALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            456777777   4443  3466777778877763    457788888888777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=86.79  E-value=2.1  Score=27.10  Aligned_cols=45  Identities=2%  Similarity=-0.216  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++..  ..++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        64 ~~A~~~~~---~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           64 GYALGDAT---RAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Confidence            44566666   4333  2466677777777663    34677777777777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=86.79  E-value=0.45  Score=31.70  Aligned_cols=50  Identities=6%  Similarity=0.090  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           32 EVVSDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        32 ~~~~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ....+.|+..|+   ++....  ++.+.+.||.+|..    ..++.+|+.+|++|.+..
T Consensus        10 ~~~~e~ai~~~~---~a~~~~p~~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~   61 (150)
T 4ga2_A           10 KADVERYIASVQ---GSTPSPRQKSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQ   61 (150)
T ss_dssp             HHHHHHHHHHHH---HHSCSHHHHHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             cChHHHHHHHHH---HhcccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            344567888888   665543  45677999999995    679999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=86.77  E-value=2.6  Score=27.09  Aligned_cols=48  Identities=8%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKGG------DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~G------d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+..++-....      -..+.++||.+|..    ..++.+|+.+|++|...
T Consensus        59 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           59 AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            56788888333222111      13588899999884    67999999999999763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=86.69  E-value=0.93  Score=29.12  Aligned_cols=46  Identities=7%  Similarity=-0.078  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|...|+   ++.+.  .++.+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        68 ~~A~~~~~---~al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           68 GLAIIALN---HARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            56788888   76665  589999999999984    668999999999998653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=86.22  E-value=2.1  Score=28.71  Aligned_cols=45  Identities=9%  Similarity=0.027  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++..  ..++.+.++||.+|..    ..++.+|+.+|+++.+.
T Consensus        54 ~~A~~~~~---~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           54 TEAEKAFT---RSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH---HHHHhCccchHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence            55778888   5544  4688899999999885    56899999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=85.92  E-value=2.7  Score=25.78  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHH--CCCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDI---NMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~---~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  -.++   .+.+.+|.+|..    ..++.+|+.+|+++....
T Consensus        18 ~~~A~~~~~---~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~   69 (129)
T 2xev_A           18 YDDASQLFL---SFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRY   69 (129)
T ss_dssp             HHHHHHHHH---HHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHC
Confidence            456888888   5544  2455   799999999985    679999999999998754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.72  E-value=4.6  Score=24.95  Aligned_cols=46  Identities=15%  Similarity=0.100  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++..  -.++.+.+++|.+|..    ..++.+|+.+|+++.+..
T Consensus        82 ~~A~~~~~---~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           82 DKAETEAS---KAIEKDGGDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHH---HHHHHTSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHhhCccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            45777887   5444  3578999999999885    568999999999998754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=85.58  E-value=2.8  Score=25.00  Aligned_cols=46  Identities=9%  Similarity=-0.034  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...  .++.+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        29 ~~A~~~~~---~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   76 (131)
T 2vyi_A           29 EAAVHFYG---KAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICID   76 (131)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcC
Confidence            55778888   55443  578999999999985    568999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=85.50  E-value=2.6  Score=27.71  Aligned_cols=31  Identities=10%  Similarity=0.075  Sum_probs=16.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      ++.+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus       114 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          114 EITALMLLASDAFM----QANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHH----cccHHHHHHHHHHHHhh
Confidence            45555555555553    34555566555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=85.47  E-value=2.7  Score=26.60  Aligned_cols=47  Identities=6%  Similarity=-0.062  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++..  ..+..+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        29 ~~~A~~~~~---~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~   77 (166)
T 1a17_A           29 YENAIKFYS---QAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELD   77 (166)
T ss_dssp             HHHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            355778888   5544  3578999999999985    569999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=85.29  E-value=3.1  Score=27.36  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      .+.|..+|+   ++.+.  .++.+.+.||.+|..    ..++.+|+.+++++......
T Consensus        21 ~~~A~~~~~---~al~~~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~   71 (184)
T 3vtx_A           21 FDGAIRAYK---KVLKADPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTT   71 (184)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCch
Confidence            467889999   66554  689999999999985    56899999999998775543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=84.77  E-value=4.2  Score=27.68  Aligned_cols=54  Identities=7%  Similarity=-0.020  Sum_probs=38.1

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           27 RVPLSEVVSDCVKRWFRDTLKEAKGG---DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        27 ~~pl~~~~~~~A~~wf~~~~kAA~~G---d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      ...........|..+++   +.....   .+.+.+.||.+|..    ..++.+|+.+|++|.+.
T Consensus        16 ~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~   72 (283)
T 3edt_B           16 PRGSAVPLCKQALEDLE---KTSGHDHPDVATMLNILALVYRD----QNKYKEAAHLLNDALAI   72 (283)
T ss_dssp             CSSSHHHHHHHHHHHHH---HHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence            33344445556666666   444333   46789999999984    56999999999999865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=84.73  E-value=1.4  Score=27.11  Aligned_cols=33  Identities=12%  Similarity=0.052  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .++.+.+.||.+|..    ..++.+|+.+|++|.+..
T Consensus         5 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   37 (100)
T 3ma5_A            5 EDPFTRYALAQEHLK----HDNASRALALFEELVETD   37 (100)
T ss_dssp             CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            578899999999985    569999999999998865

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=84.09  E-value=2.5  Score=29.71  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKG--GD---INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd---~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+   ++...  .+   +.+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        32 ~~A~~~~~---~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           32 DRAIEYFK---AVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQI   81 (261)
T ss_dssp             HHHHHHHH---HHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHH
Confidence            56888888   66654  45   8899999999985    67999999999999986

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=83.51  E-value=3.1  Score=28.95  Aligned_cols=49  Identities=8%  Similarity=0.032  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           33 VVSDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        33 ~~~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ...+.|...|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        98 g~~~~A~~~~~---~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           98 GYLEQALSVLK---DAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHH---HHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcc
Confidence            34466888888   66554  689999999999984    669999999999998765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=83.19  E-value=2.9  Score=32.47  Aligned_cols=46  Identities=4%  Similarity=-0.082  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus       290 ~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          290 QGAVDSCL---EALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHHH---HHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            55778888   66654  588999999999985    569999999999998764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=83.06  E-value=2.9  Score=28.24  Aligned_cols=47  Identities=9%  Similarity=0.003  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+..++..  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        21 ~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~   67 (258)
T 3uq3_A           21 FDEAIEHYNKAWELH--KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQ   67 (258)
T ss_dssp             HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHh
Confidence            456888898555554  788999999999985    56999999999999874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=82.97  E-value=3.2  Score=28.34  Aligned_cols=47  Identities=11%  Similarity=0.041  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+..  ++.+.+.||.+|..    ..++.+|+.+|+++.+..
T Consensus        58 ~~~A~~~~~---~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           58 YKEAADYFD---IAIKKNYNLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             HHHHHHHHH---HHHHTTCSHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH---HHHHhCcchHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHC
Confidence            356888999   777654  78899999999985    569999999999998754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=82.27  E-value=5.8  Score=23.43  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++..  ..+..+.+.+|.+|..    ..++.+|+.+|+++....
T Consensus        18 ~~A~~~~~---~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   65 (136)
T 2fo7_A           18 DEAIEYYQ---KALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   65 (136)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHC
Confidence            45666666   4333  2456666666666653    346667777777666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=82.22  E-value=6  Score=24.20  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHC-CC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKG-GD----INMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~-Gd----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+..++.+.. ++    ..+.++||.+|..    ..++.+|+.+|++|..
T Consensus        66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            4567777744443332 33    5677888888874    5688899998888865

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=81.99  E-value=1.8  Score=29.13  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|...|+   ++. ..++.+.++||.+|..    ..++.+|+.+|++|....
T Consensus        22 ~~~A~~~~~---~a~-~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   67 (213)
T 1hh8_A           22 WKGALDAFS---AVQ-DPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRD   67 (213)
T ss_dssp             HHHHHHHHH---TSS-SCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHc-CCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            356778888   654 4488999999999984    669999999999998754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=81.77  E-value=4.1  Score=27.97  Aligned_cols=30  Identities=7%  Similarity=-0.105  Sum_probs=15.0

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      ++.+.+.||.+|..    ..++.+|+.+|++|.+
T Consensus        76 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHh
Confidence            44555555555542    3355555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=81.56  E-value=3.5  Score=31.19  Aligned_cols=46  Identities=9%  Similarity=-0.032  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++.+.  .++.+.+++|.+|..    ..++.+|+.+|++|.+..
T Consensus       213 ~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          213 SAAIESCN---KALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLY  260 (336)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Confidence            55778888   55543  589999999999985    569999999999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=81.44  E-value=2.8  Score=27.35  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEA-----------------KGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA-----------------~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+..++..                 ...++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Confidence            356788888333331                 33456899999999984    569999999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=81.20  E-value=5.1  Score=25.34  Aligned_cols=32  Identities=9%  Similarity=-0.090  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus       108 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A          108 INFNVRFRLGVALDN----LGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhc
Confidence            345555555555552    33555555555555543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=80.78  E-value=4.9  Score=27.09  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.++||.+|..    ..++.+|+.+|++|....
T Consensus        89 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           89 SCNLNLATCYNK----NKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            889999999985    569999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=80.78  E-value=3  Score=31.12  Aligned_cols=46  Identities=11%  Similarity=0.134  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAK--------GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--------~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+   ++..        ...+.+.++||.+|..    ..++.+|..+|++|.+.
T Consensus       240 ~~~A~~~~~---~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          240 YEDAIPYFK---RAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHH---HHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            356788888   5544        3356788999999884    55899999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=80.67  E-value=3.1  Score=33.03  Aligned_cols=49  Identities=8%  Similarity=-0.014  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           33 VVSDCVKRWFRDTLKEAKG-----GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        33 ~~~~~A~~wf~~~~kAA~~-----Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ...+.|..+|+   ++...     .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus       235 g~~~~A~~~~~---~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          235 KISQQALSAYA---QAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HHHHHHHHHHH---HHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHH---HHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            34567888999   65552     689999999999995    569999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=80.54  E-value=6.2  Score=28.49  Aligned_cols=48  Identities=6%  Similarity=-0.130  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKGG-D----INMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~G-d----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|++.++-+..- +    +.+.+++|.+|..   ..+++++|..+|++|..
T Consensus       213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK---LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHH
Confidence            56788888555544332 2    7899999999985   33467999999999964

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=80.24  E-value=3.8  Score=25.15  Aligned_cols=49  Identities=14%  Similarity=0.032  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHC-CCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKG-GDI----NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~-Gd~----~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+..++.+.. ++.    .+.+.||.+|..    ..++.+|+.+|++|.+.
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~   78 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            35677788744444332 332    588899999985    56999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.002

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 53  DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
           +      +G M ++G GV R+ ++      +  +
Sbjct: 213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	92.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.01
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	90.09
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	89.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	88.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.16
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	87.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	87.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	87.31
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	87.06
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	86.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	85.89
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	85.17
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	84.44
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	84.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	83.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	83.25
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	81.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	81.63
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	81.49
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	81.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	80.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	80.32

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.40  E-value=3.2e-13  Score=91.51  Aligned_cols=59  Identities=17%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      +.|+.||+   +++++|++.|++.||.||..|.+|++|+.+|+.||++|+++|++.+.+.++
T Consensus        40 ~~a~~~~~---~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg   98 (133)
T d1klxa_          40 QKLFQYLS---KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG   98 (133)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHh---hhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHH
Confidence            44555666   666666666666666666666666666666666666666666655554444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.34  E-value=1.3e-12  Score=88.48  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhh
Q 033609           33 VVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKV   94 (115)
Q Consensus        33 ~~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~   94 (115)
                      .....|..||+   ++|+.|++.|+++||.||.+|.||++|+.+|++||++|+++|+..+..
T Consensus        73 ~d~~~A~~~~~---~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~  131 (133)
T d1klxa_          73 KDLRKAAQYYS---KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG  131 (133)
T ss_dssp             CCHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHh---hhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            33567999999   999999999999999999999999999999999999999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.28  E-value=1.6e-12  Score=93.90  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ...|+.||+   +++++|++.|+++||.||..|.||++|+.+|+.||++||++|+..+...++
T Consensus       198 ~~~A~~~~~---~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~  257 (265)
T d1ouva_         198 FKEALARYS---KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  257 (265)
T ss_dssp             HHHHHHHHH---HHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhhHh---hhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            556788888   888888888888888888888888888888888888888888877665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.05  E-value=1.9e-10  Score=82.65  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033609           34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK   97 (115)
Q Consensus        34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~   97 (115)
                      ....|+.||+   ++|+.|++.|++.||.+|..|.||++|+.+|+.||++++..+++.+....+
T Consensus        17 d~~~A~~~~~---kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_          17 DFTQAKKYFE---KACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            4567999999   999999999999999999999999999999999999999999998876655

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.071  Score=32.37  Aligned_cols=52  Identities=10%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           33 VVSDCVKRWFRDTLKEAKGG------DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        33 ~~~~~A~~wf~~~~kAA~~G------d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .....|+.||++.++.....      .+.+.++||.+|..    ..++.+|+..|++|.+..
T Consensus        19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHHHHhC
Confidence            34567999999554433322      26789999999994    679999999999998753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.039  Score=33.62  Aligned_cols=31  Identities=16%  Similarity=0.397  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .++.+|+||..+..    ..|+.+|+.||++|.+.
T Consensus         4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~   34 (95)
T d1tjca_           4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQ   34 (95)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            35678999999885    67999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.12  Score=33.46  Aligned_cols=46  Identities=7%  Similarity=-0.080  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .+.|..+|+   ++.+.  .++.+.+++|.+|..    -.++.+|+.+|++|...
T Consensus        20 ~~~Ai~~~~---kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1          20 YPEAAACYG---RAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHH---HHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHh
Confidence            455777777   55544  577777777777763    45777777777777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.01  E-value=0.2  Score=30.82  Aligned_cols=47  Identities=9%  Similarity=-0.101  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ...|..+|+   ++...  .++.+.+.||.+|..    ..++.+|+.+|++|....
T Consensus        32 ~~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~   80 (112)
T d1hxia_          32 LAEAALAFE---AVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLD   80 (112)
T ss_dssp             HHHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHh---hhcccccccchhhhhhhhhhhh----hhhHHHhhcccccccccc
Confidence            356889999   55444  489999999999984    669999999999998754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.33  Score=30.86  Aligned_cols=50  Identities=12%  Similarity=0.025  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ...|...|+   ++..  -.++.++|++|.++.. .+...|+.+|+..|+++....
T Consensus        15 l~~Ae~~Y~---~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~   66 (122)
T d1nzna_          15 LLKFEKKFQ---SEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKG   66 (122)
T ss_dssp             HHHHHHHHH---HHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHH---HHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhcc
Confidence            455667777   5555  3466777777777653 122346667777777776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.53  E-value=0.42  Score=30.63  Aligned_cols=45  Identities=11%  Similarity=0.103  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      .+.|..+|+   ++...  .++.+.++||.+|..    -.++.+|+.+|++|..
T Consensus        54 ~~~Ai~~~~---~al~l~p~~~~a~~~lg~~~~~----l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          54 PEQALADCR---RALELDGQSVKAHFFLGQCQLE----MESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHH---HHTTSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHH---HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            356889999   77664  589999999999984    5699999999999976

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.44  Score=30.23  Aligned_cols=47  Identities=6%  Similarity=0.011  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGGD----INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|+..|+   ++.....    +.+.++||.+|..    -.|+++|+.+|+++.+..
T Consensus        52 ~~~Ai~~l~---~~l~~~~~~~~~~~~~~Lg~~y~~----~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          52 IRKGIVLLE---ELLPKGSKEEQRDYVFYLAVGNYR----LKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHHHHHH---HHTTTSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHhccCCchHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhC
Confidence            356888999   7766542    4588999999994    569999999999998754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=0.59  Score=30.94  Aligned_cols=46  Identities=7%  Similarity=-0.091  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...  .++.+.++||.+|..    ..++.+|+..|++|.+..
T Consensus        54 ~~A~~~~~---~al~l~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          54 ALARNDFS---QALAIRPDMPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HhhccCCCCHHHHhhhchHHHH----HHHHHHhhhhhhHHHHHH
Confidence            55777888   55543  588888888888873    558888888888887754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.56  Score=29.28  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      .+.|..+|+   ++.+.  .++.+.+++|.+|..    -.++.+|+.+|++|..
T Consensus        20 y~~Ai~~y~---~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~   66 (128)
T d1elra_          20 FDTALKHYD---KAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHhCcccHHHHHhHHHHHHH----cCchHHHHHHHHHHHH
Confidence            467889999   55554  478999999999994    6799999999999976

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.83  Score=27.95  Aligned_cols=44  Identities=2%  Similarity=-0.326  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           37 CVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        37 ~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      .|...|.   ++.+  -.++.+.+++|.+|..    -.++.+|+..|++|.+.
T Consensus        55 ~A~~~~~---~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          55 KAYEDGC---KTVDLKPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             ccchhhh---hHHHhccchhhHHHHHHHHHHH----ccCHHHHHHHHHHHHHh
Confidence            4555666   3333  3567777777777763    45777777777777654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.68  Score=31.70  Aligned_cols=44  Identities=11%  Similarity=0.076  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+   ++.+  -+++.+.+.||.+|..    ..++.+|+..|++|.+
T Consensus       223 ~~A~~~~~---~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         223 EEAVAAYR---RALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHH---HHHHHhhccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            34666666   4433  3567777777777764    4467777777777765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.58  Score=31.68  Aligned_cols=46  Identities=13%  Similarity=0.074  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus       322 ~~A~~~~~---~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         322 EEAVRLYR---KALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHH---HHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            55778888   65543  478889999998884    558889999999988643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.42  Score=32.08  Aligned_cols=44  Identities=9%  Similarity=0.028  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR   86 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~   86 (115)
                      +.|..+|+   ++.+.  .++.+.+++|.+|..    -.++.+|+..|++|..
T Consensus        53 ~~A~~~~~---kAl~ldp~~~~a~~~~g~~~~~----~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          53 TEAEKAFT---RSINRDKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHH---HHHHHhhhhhhhHHHHHHHHHh----hccHHHHHHHHHHHHH
Confidence            55777887   54443  577888888888763    4578888888888864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.39  Score=36.88  Aligned_cols=48  Identities=10%  Similarity=0.073  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS   90 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~   90 (115)
                      +.|..||+   +|...  .+..++++||.+|..    ..|..+|+++|.+|..-..+
T Consensus       169 ~~A~~~y~---~A~~l~P~~~~~~~~Lg~~~~~----~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         169 SQAESYYR---HAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHHH---HHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHHHHH---HHHHHCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC
Confidence            55888999   77765  477899999999984    56889999999999865443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=1.2  Score=28.21  Aligned_cols=47  Identities=6%  Similarity=-0.035  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT   87 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~   87 (115)
                      +.|..+|+.+++. .-.++.+.++||.+|..    -.++.+|+..|++|.+.
T Consensus        27 ~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          27 ENAIKFYSQAIEL-NPSNAIYYGNRSLAYLR----TECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHHHHHH-STTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccc-chhhhhhhhhhHHHHHh----ccccchHHHHHHHHHHH
Confidence            4466666622221 23466666666666664    34666666666666553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=1.1  Score=29.84  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|...|.   + +..-++.+.++||.+|..    -.++++|+.+|++|.+..
T Consensus        21 ~~~Al~~~~---~-i~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ld   66 (192)
T d1hh8a_          21 WKGALDAFS---A-VQDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRD   66 (192)
T ss_dssp             HHHHHHHHH---T-SSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---h-cCCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHh
Confidence            466788887   4 456688999999999984    569999999999998754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=1.1  Score=30.18  Aligned_cols=47  Identities=11%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.+.||.+|..    ..++.+|+.+|++|.+..
T Consensus        15 ~~~A~~~~~---~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~   63 (388)
T d1w3ba_          15 FEAAERHCM---QLWRQEPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQN   63 (388)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            456777887   44433  578888888888874    458888888888887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=1.4  Score=29.97  Aligned_cols=47  Identities=6%  Similarity=-0.013  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|..+|+   ++.+.  .++.+.+.||.+|..    ..++.+|+..|.+|.+..
T Consensus        35 ~~~A~~~~~---~al~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~   83 (323)
T d1fcha_          35 LPNAVLLFE---AAVQQDPKHMEAWQYLGTTQAE----NEQELLAISALRRCLELK   83 (323)
T ss_dssp             HHHHHHHHH---HHHHSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHhhhccc
Confidence            466889999   77666  478999999999885    458999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.43  E-value=1.3  Score=28.26  Aligned_cols=46  Identities=9%  Similarity=-0.056  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|+   ++...  .++.|.+++|.+|..    -.++.+|+.+|++|.+..
T Consensus        84 ~~Al~~~~---~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          84 PKAIDHAS---KVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHH---HHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             chhhhhhh---ccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            45777888   55444  588999999999985    559999999999998754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.25  E-value=0.79  Score=27.91  Aligned_cols=43  Identities=7%  Similarity=-0.070  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 033609           35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRA   84 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kA   84 (115)
                      .+.|..+|+   ++...  .++.+.+.||.+|..    ..+..+|+..|++.
T Consensus        66 ~~~A~~~~~---~al~~~p~~~~a~~~la~~y~~----~g~~~~A~~~l~~~  110 (112)
T d1hxia_          66 DGLAIIALN---HARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHhhcccc---cccccccccccchHHHHHHHHH----CCCHHHHHHHHHHH
Confidence            356888998   65544  589999999999994    67999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.64  E-value=0.82  Score=29.34  Aligned_cols=50  Identities=10%  Similarity=-0.035  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-------CcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYG-------VARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~G-------v~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|+..|+   ++.+.  .++.+.++||.+|..-.-       ...++.+|+.+|++|.+..
T Consensus        58 ~~Ai~~~~---kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          58 QEAITKFE---EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            56888888   66654  689999999999964211       1245688999999987644

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.63  E-value=2.6  Score=26.85  Aligned_cols=47  Identities=4%  Similarity=-0.083  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      .+.|+..|+   ++.+  -.++.+.+++|.+|..    -.++.+|+.-|++|.+..
T Consensus        93 ~~~Ai~~~~---~al~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          93 WQGAVDSCL---EALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHH---HHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             cchhhhhhh---hhhhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            356788888   5554  4699999999999985    458999999999999864

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=2  Score=27.82  Aligned_cols=46  Identities=9%  Similarity=-0.032  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.|..+|.   ++...  .++.+.+++|.+|..    -.++.+|+..|++|.+..
T Consensus        79 ~~A~~~~~---~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          79 SAAIESCN---KALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             ccccchhh---hhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhC
Confidence            55777787   55543  589999999999995    558999999999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.21  E-value=1.2  Score=29.45  Aligned_cols=49  Identities=8%  Similarity=0.045  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      +.++..|+++++.-.....++.|.||+.|..    -.|+.+|+.+++++.+..
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHccC
Confidence            4577888855543223345788999999985    569999999999987654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.81  E-value=2.3  Score=26.76  Aligned_cols=46  Identities=2%  Similarity=-0.197  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEA--KGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA--~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ..|...|+   ++.  .-.++.+.+++|.+|..    -.++..|+.+|+++....
T Consensus        61 ~~A~~~~~---kal~~~p~~~~a~~~~g~~~~~----~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          61 GYALGDAT---RAIELDKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             chHHHHHH---HHHHHcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            45788888   554  45689999999999884    559999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=80.32  E-value=2.4  Score=27.26  Aligned_cols=48  Identities=4%  Similarity=-0.055  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033609           36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR   88 (115)
Q Consensus        36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G   88 (115)
                      ..|..+|+.+++ ..-.++.+.+++|.+|..    -.++.+|+.+|++|....
T Consensus        81 ~~Ai~~~~~al~-l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          81 TKAVECCDKALG-LDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSC
T ss_pred             ccchhhhhhhhh-cccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            457778883332 235799999999999984    568999999999998753