Citrus Sinensis ID: 033673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megdifssagndaqvdDKILQIFQKSFGQVQDILDQNRLLINEINqnheskvpdnltRNVGLIKELNNNITRVVNLYADLSNSFtrsmeassegesaatLKSEGKASQKRIRSG
Flexible Loop (DISEMBL)
megdifssagndaqvDDKILQIFQKSFGQVQDILDQNRLLINEinqnheskvpdnlTRNVGLIKELNNNITRVVNLYADLSNSFTRSMEassegesaatlksegkasqkrirsg
Low Complexity Region (SEG)
MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSFTRSMeassegesaaTLKSEGKASQKRIRSG
Disordered region (IsUnstruct)
***************DDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADL**********************************
Disordered Region (DISOPRED)
******************ILQIFQKSFGQVQDILDQNRLLINEIN*********NLTRNVGLIKELNNNITRVVNLYADLSN********************************
Disordered Region (DISEMBL)
********AGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSF******************************
Disordered Region (DISPRO)
*************QVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSF******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLxxxxxxxxxxxxxxxxxxxxxFTRSMEASSEGESAATLKSEGKASQKRIRSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q570U6	114	Protein ELF4-LIKE 4 OS=Ar	yes	no	1.0	1.0	0.745	3e-42
Q94BS8	119	Protein ELF4-LIKE 2 OS=Ar	no	no	1.0	0.957	0.721	1e-39
Q8S8F5	109	Protein ELF4-LIKE 3 OS=Ar	no	no	0.929	0.972	0.672	2e-34
O04211	111	Protein EARLY FLOWERING 4	no	no	0.614	0.630	0.485	3e-15
O80877	125	Protein ELF4-LIKE 1 OS=Ar	no	no	0.728	0.664	0.430	4e-13

>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 96/114 (84%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+ S  G+   +D K+LQ FQKSF  VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELNNNI RV +LY DLS+SF RS++ASSEGES+ TLKS+GKA+QKR RSG
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD++S  G   Q+D K+LQ FQKSF QVQDILDQNRLLINEINQNHESK  D+L RNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKA-SQKRIRSG 114
           GLI+ELNNNI  V +LY DLS+SF RS++ASSEGES  TLKS+GKA +QKR RSG
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 91/113 (80%), Gaps = 7/113 (6%)

Query: 1   MEGDIFSSA-GNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
           MEGD  S   G+  Q+D KILQ F+KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1   MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query: 60  VGLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIR 112
           VGLI+ELNNN+ RV +LY DLSN+F++SMEASSEG+S     SEG+ + +RIR
Sbjct: 61  VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIR 107

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 55/70 (78%)

Query: 16 DDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVN 75
          D  + +   ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI++VVN
Sbjct: 22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 76 LYADLSNSFT 85
          +Y+DL+ SF+
Sbjct: 82 MYSDLNTSFS 91

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de-etiolation) and gene expression. Mediates both entrainment to an environmental cycle and circadian rhythm sustainability under constant conditions. Controls flowering time. Necessary for light-induced expression of both CCA1 and LHY.

Arabidopsis thaliana (taxid: 3702)

>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 4   DIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLI 63
           D+ +SA   A  D ++       F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI
Sbjct: 25  DVAASA---AVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLI 81

Query: 64  KELNNNITRVVNLYADLSNSFTRSME 89
            E+N NI++V+ +Y+DLS +F +  +
Sbjct: 82  NEINGNISQVMEIYSDLSLNFAKKFD 107

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
224054114	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.815	1e-45
217793794	114	ELF4-like protein [Gossypium arboreum]	1.0	1.0	0.807	2e-45
255560649	114	conserved hypothetical protein [Ricinus	1.0	1.0	0.798	3e-45
224070819	114	predicted protein [Populus trichocarpa]	1.0	1.0	0.798	2e-44
225442150	114	PREDICTED: protein ELF4-LIKE 4-like isof	1.0	1.0	0.763	4e-43
388512337	114	unknown [Lotus japonicus]	1.0	1.0	0.728	4e-42
351722460	114	uncharacterized protein LOC100305734 [Gl	0.991	0.991	0.752	6e-42
217793731	114	ELF4-like protein [Citrus sinensis]	1.0	1.0	0.850	9e-42
217793704	114	ELF4-like protein [Beta vulgaris]	1.0	1.0	0.728	1e-41
356565831	114	PREDICTED: protein ELF4-LIKE 4-like isof	0.982	0.982	0.75	1e-41

>gi|224054114|ref|XP_002298099.1| predicted protein [Populus trichocarpa] gi|222845357|gb|EEE82904.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 100/114 (87%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+FS   N  QVD K+LQ FQKSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFSGLSNGNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELNNNI RVV+LYADLSN+FTRSME SSEGES+  LKS GKA+ KRIRSG
Sbjct: 61  GLIKELNNNIRRVVDLYADLSNNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793794|gb|ACK56111.1| ELF4-like protein [Gossypium arboreum]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 100/114 (87%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGDI S  GN  QVD K+LQ FQKSF QVQDILDQNRLLINEINQNHESK+PDNL+RNV
Sbjct: 1   MEGDICSGFGNGGQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLSRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELNNNI RV +LYADLS+SFTRSMEASSEG+SA   + +GKASQKRIRSG
Sbjct: 61  GLIKELNNNIRRVADLYADLSSSFTRSMEASSEGDSAGMYEPDGKASQKRIRSG 114

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560649|ref|XP_002521338.1| conserved hypothetical protein [Ricinus communis] gi|223539416|gb|EEF41006.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 100/114 (87%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+FS  GN  QVD K+LQ  QKSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFSGIGNGTQVDGKVLQTVQKSFMQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLI+ELNNNI RVV+LYADLS +F+RSMEASSEGES+  LKS GK +QKRIRSG
Sbjct: 61  GLIRELNNNIRRVVDLYADLSTNFSRSMEASSEGESSGILKSNGKGNQKRIRSG 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070819|ref|XP_002303249.1| predicted protein [Populus trichocarpa] gi|222840681|gb|EEE78228.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 99/114 (86%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD+F    N  QVD K+LQ FQKSF QVQDILDQNRLLINEINQNHESK+PDNLTRNV
Sbjct: 1   MEGDLFPGLSNGNQVDGKVLQTFQKSFVQVQDILDQNRLLINEINQNHESKIPDNLTRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELNNNI RVV+LYADLS++FTRSME SSEGES+  LKS GKA+ KRIRSG
Sbjct: 61  GLIKELNNNIRRVVDLYADLSSNFTRSMEPSSEGESSGILKSNGKANSKRIRSG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442150|ref|XP_002275459.1| PREDICTED: protein ELF4-LIKE 4-like isoform 2 [Vitis vinifera] gi|225442152|ref|XP_002275438.1| PREDICTED: protein ELF4-LIKE 4-like isoform 1 [Vitis vinifera]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 99/114 (86%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           M+GDIFS  GN  QVD K+LQ F KSF QVQ++LDQNRLLINEINQNHESK+PDNL RNV
Sbjct: 1   MDGDIFSGIGNGTQVDSKVLQTFHKSFVQVQNLLDQNRLLINEINQNHESKIPDNLNRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLI+ELNNNI RVV+LY+DLS+SF +S+EAS E ESA TLKS+GKASQKRIR G
Sbjct: 61  GLIRELNNNIRRVVDLYSDLSSSFAKSVEASLEAESAGTLKSDGKASQKRIRYG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512337|gb|AFK44230.1| unknown [Lotus japonicus]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 102/114 (89%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           M+GDIF   GN +QVD +++Q+FQKS  Q QDIL+QNR+LINEINQNHESK+PDNL+RNV
Sbjct: 1   MDGDIFGELGNTSQVDSRVMQVFQKSLLQAQDILNQNRVLINEINQNHESKMPDNLSRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELN+NI RVV+LYAD+S+SFT+S EASSEG+S+ TLKS+GK +QKRIRSG
Sbjct: 61  GLIKELNSNIRRVVDLYADISSSFTKSQEASSEGDSSGTLKSDGKVNQKRIRSG 114

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722460|ref|NP_001235965.1| uncharacterized protein LOC100305734 [Glycine max] gi|255626471|gb|ACU13580.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 99/113 (87%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           M+GDIF   GN  QVD ++LQ+FQKS  Q QDIL+QNRLLINEINQNHESK+PDNL+RNV
Sbjct: 1   MDGDIFGELGNSTQVDSRLLQVFQKSLLQAQDILNQNRLLINEINQNHESKMPDNLSRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRS 113
           GLI ELN+NI RVV+LYADLSNSFT+S EASSEG+S+ TLKS+GK +QKRIRS
Sbjct: 61  GLIGELNSNIRRVVDLYADLSNSFTKSREASSEGDSSGTLKSDGKVNQKRIRS 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793731|gb|ACK56109.1| ELF4-like protein [Citrus sinensis]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 105/114 (92%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGDIFS  GN  QVD K+LQ F+KSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV
Sbjct: 1   MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLIKELNNNI RVV+LYADLS+SF RS+E+SSEGESAA L+S+GKASQKRIRSG
Sbjct: 61  GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793704|gb|ACK56108.1| ELF4-like protein [Beta vulgaris]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 96/114 (84%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FS  GN  Q+D K+LQ FQKSF QVQ ILDQNRLLINEINQNHES++PDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKVLQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG 114
           GLI+ELNNNI RVV+LY DLS++ TRSMEASSEG+S+  LKS+ KA+ KR R G
Sbjct: 61  GLIRELNNNIRRVVDLYGDLSHTLTRSMEASSEGDSSGALKSDAKATHKRNRPG 114

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565831|ref|XP_003551140.1| PREDICTED: protein ELF4-LIKE 4-like isoform 1 [Glycine max] gi|356565833|ref|XP_003551141.1| PREDICTED: protein ELF4-LIKE 4-like isoform 2 [Glycine max] gi|356565835|ref|XP_003551142.1| PREDICTED: protein ELF4-LIKE 4-like isoform 3 [Glycine max]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 97/112 (86%)

Query: 1   MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
           MEGD FS  GN  Q+D KILQ F+KSF QVQ+ILDQNR+LINEINQNHESKVPDNL+RNV
Sbjct: 1   MEGDTFSGLGNGTQIDSKILQTFKKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRNV 60

Query: 61  GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIR 112
           GLI+ELNNNI RVV+LYADLS+SFT+SME SSEG+S+  +KS+GKA  KR R
Sbjct: 61  GLIRELNNNIRRVVDLYADLSSSFTKSMEVSSEGDSSGAVKSDGKAGHKRHR 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:505006126	114	ELF4-L4 "AT1G17455" [Arabidops	1.0	1.0	0.684	1.5e-35
TAIR|locus:2030165	119	ELF4-L2 "AT1G72630" [Arabidops	1.0	0.957	0.660	2e-33
TAIR|locus:505006240	109	ELF4-L3 "AT2G06255" [Arabidops	0.929	0.972	0.610	5.6e-29
TAIR|locus:2061226	111	ELF4 "AT2G40080" [Arabidopsis	0.614	0.630	0.485	9.8e-16
TAIR|locus:2045673	125	ELF4-L1 "AT2G29950" [Arabidops	0.745	0.68	0.435	1.4e-14

TAIR|locus:505006126 ELF4-L4 "AT1G17455" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 78/114 (68%), Positives = 87/114 (76%)

Query:     1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD+ S  G+   +D K+LQ FQKSF  VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct:     1 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query:    61 GLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKASQKRIRSG 114
             GLIKELNNNI RV +LY DLS+SF RS+          TLKS+GKA+QKR RSG
Sbjct:    61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:2030165 ELF4-L2 "AT1G72630" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/115 (66%), Positives = 87/115 (75%)

Query:     1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD++S  G   Q+D K+LQ FQKSF QVQDILDQNRLLINEINQNHESK  D+L RNV
Sbjct:     5 MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query:    61 GLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKAS-QKRIRSG 114
             GLI+ELNNNI  V +LY DLS+SF RS+          TLKS+GKA+ QKR RSG
Sbjct:    65 GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:505006240 ELF4-L3 "AT2G06255" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/113 (61%), Positives = 83/113 (73%)

Query:     1 MEGDIFSSA-GNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
             MEGD  S   G+  Q+D KILQ F+KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct:     1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query:    60 VGLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKASQKRIR 112
             VGLI+ELNNN+ RV +LY DLSN+F++SM             SEG+ + +RIR
Sbjct:    61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIR 107

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061226 ELF4 "AT2G40080" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 34/70 (48%), Positives = 55/70 (78%)

Query:    16 DDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVN 75
             D  + +   ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI++VVN
Sbjct:    22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query:    76 LYADLSNSFT 85
             +Y+DL+ SF+
Sbjct:    82 MYSDLNTSFS 91

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009648 "photoperiodism" evidence=IEP;IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

TAIR|locus:2045673 ELF4-L1 "AT2G29950" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query:     2 EGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVG 61
             E D    A + A  D ++       F + Q  LDQNR LI  +N+NH S++PDN++RNVG
Sbjct:    20 ENDGEDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVG 79

Query:    62 LIKELNNNITRVVNLYADLSNSFTR 86
             LI E+N NI++V+ +Y+DLS +F +
Sbjct:    80 LINEINGNISQVMEIYSDLSLNFAK 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114       104   0.00091  102 3  11 23  0.46    30
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  439 (47 KB)
  Total size of DFA:  84 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.44u 0.08s 13.52t   Elapsed:  00:00:02
  Total cpu time:  13.44u 0.08s 13.52t   Elapsed:  00:00:02
  Start:  Tue May 21 00:15:59 2013   End:  Tue May 21 00:16:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q570U6	EF4L4_ARATH	No assigned EC number	0.7456	1.0	1.0	yes	no
Q94BS8	EF4L2_ARATH	No assigned EC number	0.7217	1.0	0.9579	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam07011	89	pfam07011, DUF1313, Protein of unknown function (D	2e-39

>gnl|CDD|191668 pfam07011, DUF1313, Protein of unknown function (DUF1313)

 Score =  126 bits (318), Expect = 2e-39
 Identities = 60/87 (68%), Positives = 73/87 (83%)

Query: 13 AQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITR 72
          A  D K+ Q FQ+SF QVQ +LDQNRLLI EINQNHES++PDNL+RNVGLI+ELN NI+R
Sbjct: 2  AGEDGKVWQTFQRSFVQVQSVLDQNRLLIQEINQNHESRIPDNLSRNVGLIRELNGNISR 61

Query: 73 VVNLYADLSNSFTRSMEASSEGESAAT 99
          VV+LY+DLS SF+RS+ AS EG+S  T
Sbjct: 62 VVSLYSDLSGSFSRSVRASREGDSTGT 88

This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	100.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	88.54
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	84.79
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	80.72

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=100.00  E-value=4.2e-55  Score=308.30  Aligned_cols=87  Identities=72%  Similarity=1.032  Sum_probs=85.0

Q ss_pred             cccChHHHHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhHhHHHHHHHHhhhhhhhhhhhcccc
Q 033673           13 AQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVNLYADLSNSFTRSMEASS   92 (114)
Q Consensus        13 ~~~d~k~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~sF~~~~~~ss   92 (114)
                      ++||+|+|+||+|+|+|||+||||||+||+|||||||||+||+|+|||+||||||+||+|||+||+|||++|+++|++++
T Consensus         1 ~~~d~~~~~tf~~sF~qVQ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~~~~~~~   80 (87)
T PF07011_consen    1 EQGDGKVWQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSKSVEQSS   80 (87)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 033673           93 EGESAAT   99 (114)
Q Consensus        93 eg~s~g~   99 (114)
                      +|+++|+
T Consensus        81 ~g~~~~~   87 (87)
T PF07011_consen   81 EGDSSGT   87 (87)
T ss_pred             ccCcCCC
Confidence            9999985

The function of this family is unknown.

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=88.54  E-value=0.43  Score=32.41  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhHHHHHHHhhccc-cCCCCcchhhHHHHHHHhHhH
Q 033673           28 GQVQDILDQNRLLINEINQNHE-SKVPDNLTRNVGLIKELNNNI   70 (114)
Q Consensus        28 ~qVQ~iLDqNR~LI~EINqNHe-Sr~PdnL~RNV~LIrELN~NI   70 (114)
                      .+||.+||.|.-||+-|.+++. .|.+|    =|..-+-|..|+
T Consensus         9 ~~IQk~LdEN~~LI~~I~e~qn~Gr~~E----c~qyq~~LhrNL   48 (65)
T PF05030_consen    9 EQIQKMLDENDQLIQCIQEYQNKGRAQE----CVQYQQILHRNL   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHH
Confidence            5799999999999999999875 33333    233455555554

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=84.79  E-value=1.2  Score=32.08  Aligned_cols=38  Identities=32%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             CcchhhHHHHHHHhH--------hHHHHHHHHhhhhhhhhhhhccc
Q 033673           54 DNLTRNVGLIKELNN--------NITRVVNLYADLSNSFTRSMEAS   91 (114)
Q Consensus        54 dnL~RNV~LIrELN~--------NI~rVv~LYsdLS~sF~~~~~~s   91 (114)
                      +=|-+|=.||.|+|.        |+.|=|.|-++|..+.++.|+-.
T Consensus        20 ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY   65 (87)
T PF07011_consen   20 SILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLY   65 (87)
T ss_pred             HHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHH
Confidence            346778888888885        47788888888888888877643

The function of this family is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=80.72  E-value=1.7  Score=28.75  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=18.3

Q ss_pred             HHHHhHhHHHHHHHHhhhhhhh
Q 033673           63 IKELNNNITRVVNLYADLSNSF   84 (114)
Q Consensus        63 IrELN~NI~rVv~LYsdLS~sF   84 (114)
                      |.+|+.||++|++||.-.|-.+
T Consensus        30 ve~i~envk~ll~lYE~Vs~~i   51 (55)
T PF05377_consen   30 VEKIEENVKDLLSLYEVVSNQI   51 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            5678999999999999877543

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 18 KILQIFQKSFGQ---VQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVV 74
           IL +F+ +F      +D+ D  + ++++   +H     D ++  + L   L +    +V
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 75 NLYAD 79
            + +
Sbjct: 80 QKFVE 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00