Citrus Sinensis ID: 033702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHcHHHHcccccccHHHHHcccccccccccccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MKVVAAYLLAVLggntspsadDIKGIlgsvgadceDNRLELLLSEVKGKDITELIASGReklasvpsgggvavaaapsaggagaapaaaeakkeekveekeesdddmgfslfd
Flexible Loop (DISEMBL)
MKVVAAYLLAVLggntspsaddIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAGGAGAAPAAaeakkeekveekeesdddmgfslfd
Low Complexity Region (SEG)
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLasvpsgggvavaaapsaggagaapaaaeakkeekveekeesDDDMGFSLFD
Disordered region (IsUnstruct)
**VVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA*********************************************************
Disordered Region (DISOPRED)
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG*GV***********************************MGFSLFD
Disordered Region (DISEMBL)
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAA******************************MGFSLFD
Disordered Region (DISPRO)
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG******************************************L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
O24415	113	60S acidic ribosomal prot	N/A	no	1.0	1.0	0.707	4e-26
Q9LXM8	111	60S acidic ribosomal prot	yes	no	0.982	1.0	0.725	7e-26
P41099	114	60S acidic ribosomal prot	N/A	no	0.592	0.587	0.761	3e-23
P46252	112	60S acidic ribosomal prot	N/A	no	0.991	1.0	0.716	8e-22
P51407	115	60S acidic ribosomal prot	no	no	1.0	0.982	0.721	1e-19
Q96UQ7	110	60S acidic ribosomal prot	N/A	no	0.973	1.0	0.557	2e-19
Q9LH85	115	60S acidic ribosomal prot	no	no	1.0	0.982	0.495	2e-18
Q9SLF7	115	60S acidic ribosomal prot	no	no	0.575	0.565	0.753	2e-18
O01725	116	60S acidic ribosomal prot	yes	no	1.0	0.974	0.620	2e-18
P90703	114	60S acidic ribosomal prot	N/A	no	1.0	0.991	0.460	3e-17

>sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 95/113 (84%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           +L+SVPSGGG     AP+A   G A  A EAKKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113

Plays an important role in the elongation step of protein synthesis.
Zea mays (taxid: 4577)

>sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGGVAV+AAPS+   G   AA   KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSS--GGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

Plays an important role in the elongation step of protein synthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 63/67 (94%)

Query: 1  MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
          MKV+AA+LLA+LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE
Sbjct: 1  MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61 KLASVPS 67
          +LASVPS
Sbjct: 61 RLASVPS 67

Plays an important role in the elongation step of protein synthesis.

Parthenium argentatum (taxid: 35935)

>sp|P46252|RLA2A_MAIZE 60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           K ASVP GGG    AA +A  AG A  AAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAA-AAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112

Plays an important role in the elongation step of protein synthesis.

Zea mays (taxid: 4577)

>sp|P51407|RLA21_ARATH 60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 94/115 (81%), Gaps = 2/115 (1%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASV--PSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASV    GGGVAVA+A S GG G    AAE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

Plays an important role in the elongation step of protein synthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK VAAYLL V  GNTSPSA+D+K +L +     ++ RL +L+ E++GKD+ E+IA G +
Sbjct: 1   MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSK 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGG    AAA  A   GAA   AE K  EK    EESDDDMGF LFD
Sbjct: 61  KLASVPSGGAAPAAAAGGAAAGGAAEEKAEDKPAEK---DEESDDDMGFGLFD 110

Probable bifunctional protein. The phosphorylated protein plays an important role in the elongation step of protein synthesis (By similarity). The phosphopantetheinylated protein acts as an acyl carrier protein.

Rhodotorula glutinis (taxid: 5535)

>sp|Q9LH85|RLA23_ARATH 60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AA+LLA LGGN +P+++D+K IL SVGA+ ++ +++LL S +K  D+TELIA+GRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEE-KEESDDDMGFS-LFD 113
           K++++ SGG      A   GG  A+ A   A+ ++KVEE K+ES DD G   LFD
Sbjct: 61  KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115

Plays an important role in the elongation step of protein synthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLF7|RLA22_ARATH 60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 57/65 (87%)

Query: 1  MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
          MKVVAAYLLAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KLASV 65
          KLASV
Sbjct: 61 KLASV 65

Plays an important role in the elongation step of protein synthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|O01725|RLA2_BRAFL 60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 86/116 (74%), Gaps = 3/116 (2%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           M+ VAAYLLAVLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR 
Sbjct: 1   MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRG 60

Query: 61  KLASVPS---GGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KL+S+PS       A     +AGG GAAPAA E K+E+K E +EESDDDMGF LFD
Sbjct: 61  KLSSMPSGGGVAAAAGGGGAAAGGGGAAPAAEEKKEEKKEESEEESDDDMGFGLFD 116

Plays an important role in the elongation step of protein synthesis.

Branchiostoma floridae (taxid: 7739)

>sp|P90703|RLA2_BRUMA 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 68/113 (60%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK +AAYLL+ + GN SPSA DI+ +LGSVG D +      ++S + GK I E+I +G  
Sbjct: 2   MKYLAAYLLSTMSGNKSPSAKDIEDVLGSVGLDVDMEDANKVVSALSGKSIDEVITAGLA 61

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           K++SVPS   V+  A   +     A  A   K E K   KEESD+DMGF LFD
Sbjct: 62  KVSSVPSDAAVSAIAPVVSATPTDALQAGSKKGETKEGPKEESDEDMGFGLFD 114

Plays an important role in the elongation step of protein synthesis.

Brugia malayi (taxid: 6279)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
147828208	110	hypothetical protein VITISV_042772 [Viti	0.973	1.0	0.752	8e-29
224105037	113	predicted protein [Populus trichocarpa]	1.0	1.0	0.823	1e-28
24473796	113	60s acidic ribosomal protein [Prunus dul	1.0	1.0	0.814	1e-27
297734823	145	unnamed protein product [Vitis vinifera]	1.0	0.779	0.831	7e-27
42565379	114	60s acidic ribosomal protein [Hyacinthus	1.0	0.991	0.815	7e-27
388516419	115	unknown [Lotus japonicus]	1.0	0.982	0.791	1e-26
388503704	113	unknown [Medicago truncatula]	1.0	1.0	0.761	1e-26
225436299	113	PREDICTED: 60S acidic ribosomal protein	1.0	1.0	0.831	1e-26
121955995	113	60S acidic ribosomal protein P2 [Juglans	1.0	1.0	0.769	2e-26
297815582	111	hypothetical protein ARALYDRAFT_484870 [	0.982	1.0	0.716	4e-26

>gi|147828208|emb|CAN75514.1| hypothetical protein VITISV_042772 [Vitis vinifera]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 92/113 (81%), Gaps = 3/113 (2%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGN S  ADD+K ILGSVGA  +D+ +ELLL EVKG  ITELIASGRE
Sbjct: 1   MKVMAAYLLAVLGGNVSLCADDLKSILGSVGAGADDDGIELLLFEVKGIGITELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLA VPSGGGVAVAA+    G GAAPAA E +KEEKVEEKE SD DMGF LFD
Sbjct: 61  KLAXVPSGGGVAVAASD---GGGAAPAATEPRKEEKVEEKEGSDRDMGFGLFD 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105037|ref|XP_002313663.1| predicted protein [Populus trichocarpa] gi|118484510|gb|ABK94130.1| unknown [Populus trichocarpa] gi|118485202|gb|ABK94462.1| unknown [Populus trichocarpa] gi|118487376|gb|ABK95516.1| unknown [Populus trichocarpa] gi|118488119|gb|ABK95879.1| unknown [Populus trichocarpa] gi|222850071|gb|EEE87618.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 101/113 (89%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT P+A+D+K ILGSVGAD +D+R+ELLLS VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTCPTAEDLKNILGSVGADADDDRIELLLSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGGVAV+A  +   AG A  AAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGVAVSAGAAPAAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24473796|gb|AAL91663.1| 60s acidic ribosomal protein [Prunus dulcis] gi|111013714|gb|ABH03379.1| 60S acidic ribosomal protein [Prunus dulcis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 102/113 (90%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PSA+D+K ILGSVGA+ +D+R++LLLSEVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTTPSAEDLKDILGSVGAETDDDRIQLLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG    AAP AG   AAPAAAE KKEEKVEEKE++DDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPGAGAGAAAPAAAEPKKEEKVEEKEDTDDDMGFSLFD 113

Source: Prunus dulcis

Species: Prunus dulcis

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734823|emb|CBI17057.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 102/113 (90%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNT PSA+D+K ILGSVGA+ +D+R+ELLL+EVKGKDITELIASGRE
Sbjct: 33  MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 92

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG AVA A   GG  AAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 93  KLASVPSGGGAAVAVAAPGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565379|gb|AAS20966.1| 60s acidic ribosomal protein [Hyacinthus orientalis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 101/114 (88%), Gaps = 1/114 (0%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PSA+ IK ILGSVGAD ED+R+ELLLSEVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTTPSAEVIKDILGSVGADAEDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGG-GVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           K ASVPSGG  +AV+A  + GGA  A AAAE KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  KFASVPSGGAAIAVSAPAAGGGAAPAAAAAETKKEEKVEEKEESDEDMGFSLFD 114

Source: Hyacinthus orientalis

Species: Hyacinthus orientalis

Genus: Hyacinthus

Family: Hyacinthaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516419|gb|AFK46271.1| unknown [Lotus japonicus]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 101/115 (87%), Gaps = 2/115 (1%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNT+PSADD+K IL SVGAD +D +L  LLSEVKGKD+ E+IASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60

Query: 61  KLASVPSGGGVAVAAA--PSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KL+SVP GGGVAVA +  P  GG GAAPAAAE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLSSVPCGGGVAVAVSAAPGGGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503704|gb|AFK39918.1| unknown [Medicago truncatula]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 94/113 (83%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN SPSA D+K ILGSVG + ED  +ELLLSEVKGKD  ELIASGRE
Sbjct: 1   MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG     A + GGA AA  AAEAK+E+KVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVFAATGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436299|ref|XP_002266030.1| PREDICTED: 60S acidic ribosomal protein P2B isoform 1 [Vitis vinifera] gi|147767214|emb|CAN73396.1| hypothetical protein VITISV_003816 [Vitis vinifera] gi|147782772|emb|CAN65595.1| hypothetical protein VITISV_030546 [Vitis vinifera]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 102/113 (90%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNT PSA+D+K ILGSVGA+ +D+R+ELLL+EVKGKDITELIASGRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG AVA A   GG  AAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAPGGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121955995|gb|ABM65702.1| 60S acidic ribosomal protein P2 [Juglans regia]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 98/113 (86%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVA+YLLAVLGGNT+P  DD+K ILGSVGA+ +D+++ELLLSEVKGKDITELIA+GRE
Sbjct: 1   MKVVASYLLAVLGGNTTPCTDDLKHILGSVGAEADDDKIELLLSEVKGKDITELIAAGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG    AA + G   AA AAAE KKEEKVEEK+ESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGGIAVAAAAGGAPAAAAAAAEPKKEEKVEEKKESDDDMGFSLFD 113

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815582|ref|XP_002875674.1| hypothetical protein ARALYDRAFT_484870 [Arabidopsis lyrata subsp. lyrata] gi|297321512|gb|EFH51933.1| hypothetical protein ARALYDRAFT_484870 [Arabidopsis lyrata subsp. lyrata]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P A++IK I+G+VGAD +   +ELLL EV GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPCAENIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGG AV+AA S+GG GA   AA  KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGAVSAALSSGGGGA--PAAVEKKEAKKEEKEESDDDMGFSLFE 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2075993	111	AT3G44590 [Arabidopsis thalian	0.548	0.558	0.725	3.7e-22
TAIR|locus:2042062	115	AT2G27710 [Arabidopsis thalian	1.0	0.982	0.478	4.4e-20
TAIR|locus:2042052	130	AT2G27720 [Arabidopsis thalian	0.548	0.476	0.571	8.9e-18
UNIPROTKB|Q96UQ7	110	Q96UQ7 "60S acidic ribosomal p	0.548	0.563	0.516	1.6e-16
ZFIN|ZDB-GENE-031018-2	115	rplp2 "ribosomal protein, larg	1.0	0.982	0.408	1.8e-16
CGD|CAL0003308	111	RPP2B [Candida albicans (taxid	0.982	1.0	0.407	2.3e-16
UNIPROTKB|Q5ANH5	111	RPP2B "Cytosolic ribosomal aci	0.982	1.0	0.407	2.3e-16
ASPGD|ASPL0000000414	109	AN5996 [Emericella nidulans (t	0.964	1.0	0.415	6e-16
UNIPROTKB|F1RYZ0	115	RPLP2 "60S acidic ribosomal pr	1.0	0.982	0.4	1.6e-15
WB|WBGene00004410	110	rla-2 [Caenorhabditis elegans	0.513	0.527	0.517	2.2e-15

TAIR|locus:2075993 AT3G44590 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MKV AA+LLAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGRE
Sbjct:     1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query:    61 KL 62
             KL
Sbjct:    61 KL 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2042062 AT2G27710 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 55/115 (47%), Positives = 64/115 (55%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MKVVAAYLLAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GRE
Sbjct:     1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query:    61 KLXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                           DDDMGFSLF+
Sbjct:    61 KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2042052 AT2G27720 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 44/77 (57%), Positives = 52/77 (67%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGS---------------VGADCEDNRLELLLSE 45
             MKVVAA+LLAVL G  SP+  DIK ILGS                GA+ ED+++ELLL E
Sbjct:     1 MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query:    46 VKGKDITELIASGREKL 62
             VKGKD+ ELIA+GREKL
Sbjct:    61 VKGKDLAELIAAGREKL 77

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|Q96UQ7 Q96UQ7 "60S acidic ribosomal protein P2" [Rhodotorula glutinis (taxid:5535)]

 Score = 167 (63.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MK VAAYLL V  GNTSPSA+D+K +L +     ++ RL +L+ E++GKD+ E+IA G +
Sbjct:     1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSK 60

Query:    61 KL 62
             KL
Sbjct:    61 KL 62

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005840 "ribosome" evidence=NAS

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=NAS

ZFIN|ZDB-GENE-031018-2 rplp2 "ribosomal protein, large P2" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/115 (40%), Positives = 58/115 (50%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             M+ VAAYLLAVLGGNT+PSA DIK ILGSVG + +D RL  ++SE+ GKDI E++ +G  
Sbjct:     1 MRYVAAYLLAVLGGNTNPSAKDIKNILGSVGIEADDERLNKVVSELNGKDINEVMNAGLS 60

Query:    61 KLXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                           D+DMGF LFD
Sbjct:    61 KLASVPAGGAVAVSTASAGGGGGAPAEAPAAEEKKEEKKEESEESDEDMGFGLFD 115

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

CGD|CAL0003308 RPP2B [Candida albicans (taxid:5476)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 46/113 (40%), Positives = 56/113 (49%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MK +AAYLL V GGNTSPSA DI  +L SVG + E++RL+ LL +++GKD+ ELIA G  
Sbjct:     1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNT 60

Query:    61 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                         DDDMGF LFD
Sbjct:    61 KLASVPSGGAAAGGASASAGAAAGGAAEAEEEKEEEAKEES--DDDMGFGLFD 111

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0005840 "ribosome" evidence=IDA

GO:0006412 "translation" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q5ANH5 RPP2B "Cytosolic ribosomal acidic protein P2B" [Candida albicans SC5314 (taxid:237561)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 46/113 (40%), Positives = 56/113 (49%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MK +AAYLL V GGNTSPSA DI  +L SVG + E++RL+ LL +++GKD+ ELIA G  
Sbjct:     1 MKYLAAYLLLVQGGNTSPSASDITALLESVGVEAEESRLQALLKDLEGKDLQELIAEGNT 60

Query:    61 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                         DDDMGF LFD
Sbjct:    61 KLASVPSGGAAAGGASASAGAAAGGAAEAEEEKEEEAKEES--DDDMGFGLFD 111

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0005840 "ribosome" evidence=IDA

GO:0006412 "translation" evidence=ISS

ASPGD|ASPL0000000414 AN5996 [Emericella nidulans (taxid:162425)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 47/113 (41%), Positives = 55/113 (48%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             MK +AAYLL  L GN SPSA DIK +L SVG D +D RLE L++E++GKDI ELIA G  
Sbjct:     1 MKHLAAYLLLALAGNESPSASDIKEVLSSVGVDADDERLEKLIAELQGKDINELIAEGTT 60

Query:    61 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                         D+DMGF LFD
Sbjct:    61 KLASVPSGGAGGAAPAAAAGGAAAAEAPAAEKEEEKEES----DEDMGFGLFD 109

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

UNIPROTKB|F1RYZ0 RPLP2 "60S acidic ribosomal protein P2" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 46/115 (40%), Positives = 57/115 (49%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
             M+ VA+YLLA LGGNTSPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  
Sbjct:     1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query:    61 KLXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
             KL                                           DDDMGF LFD
Sbjct:    61 KLASVPSGGAVAVAAAPGSAAPAAGSAPAAAEEKKEEKKEESEESDDDMGFGLFD 115

GO:0006414 "translational elongation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

WB|WBGene00004410 rla-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query:     1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASG 58
             M+ V+AYLLAVLGGN +P  DD+K IL +VG D +    +L++S + GK + ELIA G
Sbjct:     1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEG 58

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29315	RLA2_PIG	No assigned EC number	0.6	1.0	0.9826	yes	no
P42899	RLA2_BOVIN	No assigned EC number	0.6086	1.0	0.9826	yes	no
P22683	RLA2_DICDI	No assigned EC number	0.4513	0.9380	1.0	yes	no
Q06382	RLA3_LEIIN	No assigned EC number	0.3928	0.9557	0.9729	yes	no
P46252	RLA2A_MAIZE	No assigned EC number	0.7168	0.9911	1.0	N/A	no
Q9UUZ6	RLA2_ASPFU	No assigned EC number	0.62	0.8672	0.8828	yes	no
Q9HFQ4	RLA4_CANAX	No assigned EC number	0.6017	0.9823	1.0	N/A	no
O24415	RLA2B_MAIZE	No assigned EC number	0.7079	1.0	1.0	N/A	no
Q9LXM8	RLA24_ARATH	No assigned EC number	0.7256	0.9823	1.0	yes	no
P42037	RLA2_ALTAL	No assigned EC number	0.6106	1.0	1.0	N/A	no
O44010	RLA2_LEIBR	No assigned EC number	0.3982	0.9292	1.0	yes	no
P02399	RLA2_ARTSA	No assigned EC number	0.5486	0.9823	1.0	N/A	no
O01725	RLA2_BRAFL	No assigned EC number	0.6206	1.0	0.9741	yes	no
Q9C3Z5	RLA2_PODAS	No assigned EC number	0.5840	0.9823	1.0	yes	no
P08094	RLA2_SCHPO	No assigned EC number	0.5797	0.6106	0.6272	yes	no
O61463	RLA2_CRYST	No assigned EC number	0.5221	0.9734	1.0	N/A	no
Q8TFM9	RLA2_FUSCU	No assigned EC number	0.6283	0.9646	1.0	N/A	no
Q96UQ7	RLA2_RHOGU	No assigned EC number	0.5575	0.9734	1.0	N/A	no
P02400	RLA4_YEAST	No assigned EC number	0.5087	0.9646	0.9909	yes	no
P51407	RLA21_ARATH	No assigned EC number	0.7217	1.0	0.9826	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002283001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (107 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.785
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•			0.725
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•			0.690
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.685
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•		•			0.680
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•		•			0.669
	GSVIVG00002547001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (210 aa)				•		•			0.668
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•		•			0.652
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•		•			0.637
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)				•		•			0.630

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
PLN00138	113	PLN00138, PLN00138, large subunit ribosomal protei	9e-48
cd05833	109	cd05833, Ribosomal_P2, Ribosomal protein P2	4e-41
PTZ00373	112	PTZ00373, PTZ00373, 60S Acidic ribosomal protein P	5e-27
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	6e-18
COG2058	109	COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP	4e-16
cd04411	105	cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P	1e-13
cd05831	103	cd05831, Ribosomal_P1, Ribosomal protein P1	5e-12
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	2e-08
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	2e-05
TIGR03685	105	TIGR03685, L12P_arch, 50S ribosomal protein L12P	2e-04
cd05832	106	cd05832, Ribosomal_L12p, Ribosomal protein L12p	3e-04
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	5e-04

>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2; Provisional

 Score =  148 bits (374), Expect = 9e-48
 Identities = 97/113 (85%), Positives = 103/113 (91%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT PSA+D+K ILGSVGAD +D+R+ELLLSEVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KLASVPSGGGVAVAAA +    GAA  AAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGVAVAAAAAPAAGGAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 113

Length = 113

>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2

 Score =  131 bits (331), Expect = 4e-41
 Identities = 76/114 (66%), Positives = 89/114 (78%), Gaps = 6/114 (5%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK VAAYLLAVLGGN SPSA D+K ILGSVG + +D +L  ++SE++GKD+ ELIA+G+E
Sbjct: 1   MKYVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEELIAAGKE 60

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEE-KEESDDDMGFSLFD 113
           KLASVP+G G A  AA     A AA AAA AKKEEK EE +EESDDDMGF LFD
Sbjct: 61  KLASVPAGAGGAAPAA-----AAAAAAAAAAKKEEKKEESEEESDDDMGFGLFD 109

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plants have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 109

>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional

 Score = 95.7 bits (238), Expect = 5e-27
 Identities = 63/113 (55%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK VAAYL+ VLGGN +P+  ++K +L +V AD ED+ L+     ++GK   ELIA+G +
Sbjct: 3   MKYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHELIAAGMK 62

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           KL ++  GGGVA AAAP+A GA  A A AEAKKEEK EE+EE +DD+GFSLF 
Sbjct: 63  KLQNI--GGGVAAAAAPAA-GAATAGAKAEAKKEEKKEEEEEEEDDLGFSLFG 112

Length = 112

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 71.9 bits (177), Expect = 6e-18
 Identities = 46/96 (47%), Positives = 63/96 (65%), Gaps = 8/96 (8%)

Query: 17  SPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAA 76
            P+A DIK +L + G + E  RLELL+  ++GK+I ELIA+G  KL+        A AAA
Sbjct: 1   EPTAADIKHVLKAAGKEVEAERLELLVKFLEGKNIKELIANGSAKLS--------AAAAA 52

Query: 77  PSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLF 112
            +A  A AA AAA  +++++ EE+EE DDDMGF LF
Sbjct: 53  AAAAAAAAAAAAAAEEEKKEEEEEEEEDDDMGFGLF 88

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

 Score = 67.8 bits (166), Expect = 4e-16
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           M+ + AYLL  L G    + D++K +L + G + E+ R + L++ ++G DI E+I +  E
Sbjct: 1   MEYIYAYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEGVDIDEVIKNAAE 59

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
             A+  + G  A AAA +   A A  A  E K+E   E +EESDDDM F LF 
Sbjct: 60  APAAAAAAGAAAAAAAGAEAAAEADEAEEEEKEE---EAEEESDDDMLFGLFG 109

Length = 109

>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p

 Score = 61.5 bits (149), Expect = 1e-13
 Identities = 49/112 (43%), Positives = 66/112 (58%), Gaps = 7/112 (6%)

Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           M+ VAAYLL   GG    + D IK +L + GA+ E  R++L LS + GK+I E+I+ G+E
Sbjct: 1   MEYVAAYLLLHKGGKE-LTEDKIKELLSAAGAEIEPERVKLFLSALNGKNIDEVISKGKE 59

Query: 61  KLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLF 112
            ++S       A AAA  A  A A    AE  +E K EE+EE D+D GF LF
Sbjct: 60  LMSS------QAAAAAAPAATAAATAEPAEKAEEAKEEEEEEEDEDFGFGLF 105

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have two copies each of P1 and P2 (two heterodimers). Bacteria may have four or six copies (two or three homodimers), depending on the species. As in bacteria, the stalk is crucial for binding of initiation, elongation, and release factors in eukaryotes and archaea. Length = 105

>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1

 Score = 56.9 bits (138), Expect = 5e-12
 Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 13/109 (11%)

Query: 5   AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLAS 64
           AA +L         +AD+I  +L + G + E     L    ++GKDI +L+++       
Sbjct: 7   AALILH--DDGIEITADNINALLKAAGVNVEPYWPGLFAKALEGKDIKDLLSNV------ 58

Query: 65  VPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEE-KEESDDDMGFSLF 112
               GG    AAP+A  A AA AAAEAKKEEK EE +EESDDDMGF LF
Sbjct: 59  ----GGGGGGAAPAAAAAAAAAAAAEAKKEEKKEEEEEESDDDMGFGLF 103

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plant species have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site located in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 103

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 71  VAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 113
           +A  +A +A  A AA AAA A      EE+EE +DDMGF LFD
Sbjct: 269 LANPSAAAAAAAAAAAAAAAAAAAPA-EEEEEEEDDMGFGLFD 310

Length = 310

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 19  SADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPS 78
           + D++K +L + G + ++ R++ L++ ++  +I E I    +K A+ P      VAAA +
Sbjct: 18  NEDNLKKVLEAAGVEVDEARVKALVAALEDVNIEEAI----KKAAAAP------VAAAAA 67

Query: 79  AGGAGAAPAAAEAKKEEKVEEKEESDDD 106
           A  A AA AA E K+EE+ EE++E  ++
Sbjct: 68  AAAAAAAAAAEEKKEEEEEEEEKEESEE 95

Length = 106

>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 21  DDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG 80
           +++K +L + G + ++ R++ L++ ++G +I E I    +K A+ P    VA AAA +A 
Sbjct: 20  ENLKAVLEAAGVEVDEARVKALVAALEGVNIEEAI----KKAAAAP----VAAAAAAAAA 71

Query: 81  GAGAAPAAAEAKKEEKVEEKEESDDDMGFS 110
            A A     E ++EE+ EE+ E +   G  
Sbjct: 72  AAAAEEEEEEEEEEEEEEEESEEEAMAGLG 101

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome. Length = 105

>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 19  SADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPS 78
           + +++K +L + G + ++ R++ L++ ++  +I E I                A AAAP+
Sbjct: 18  NEENLKKVLEAAGIEVDEARVKALVAALEEVNIDEAIKKA----------AVAAAAAAPA 67

Query: 79  AGGAGAAPAAAEAKKEEKVEEKEESD 104
           A  A AA   AE K+EEK +E+E+ +
Sbjct: 68  AAAAAAAEEKAEEKEEEKKKEEEKEE 93

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly interact with rRNA. Archaeal L12p is believed to function in a similar fashion. However, hybrid ribosomes containing the large subunit from E. coli with an archaeal stalk are able to bind archaeal and eukaryotic elongation factors but not bacterial elongation factors. In several mesophilic and thermophilic archaeal species, the binding of 23S rRNA to protein L11 and to the L10/L12p pentameric complex was found to be temperature-dependent and cooperative. Length = 106

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 68  GGGVAVAAAPSAGGAGAAPAAAEAKKEEKVEEKEESDDDMG 108
           GGG + AA  +A    AA AAA      K EE+E  +DD G
Sbjct: 284 GGGGSAAAEAAAAAPAAASAAA------KEEEEESDEDDFG 318

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PTZ00373	112	60S Acidic ribosomal protein P2; Provisional	100.0
PLN00138	113	large subunit ribosomal protein LP2; Provisional	100.0
cd05833	109	Ribosomal_P2 Ribosomal protein P2. This subfamily	100.0
KOG3449	112	consensus 60S acidic ribosomal protein P2 [Transla	100.0
cd04411	105	Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and	100.0
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	99.97
cd05831	103	Ribosomal_P1 Ribosomal protein P1. This subfamily	99.96
PRK06402	106	rpl12p 50S ribosomal protein L12P; Reviewed	99.96
KOG1762	114	consensus 60s acidic ribosomal protein P1 [Transla	99.94
TIGR03685	105	L21P_arch 50S ribosomal protein L12P. This model r	99.92
cd05832	106	Ribosomal_L12p Ribosomal protein L12p. This subfam	99.91
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	99.89
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	98.98
PTZ00240	323	60S ribosomal protein P0; Provisional	98.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	96.96
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	96.42
KOG3449	112	consensus 60S acidic ribosomal protein P2 [Transla	95.16
cd04411	105	Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and	94.87
cd05832	106	Ribosomal_L12p Ribosomal protein L12p. This subfam	92.12
PRK06402	106	rpl12p 50S ribosomal protein L12P; Reviewed	90.76
TIGR03685	105	L21P_arch 50S ribosomal protein L12P. This model r	87.33
cd05831	103	Ribosomal_P1 Ribosomal protein P1. This subfamily	86.26
PTZ00373	112	60S Acidic ribosomal protein P2; Provisional	84.75
PLN00138	113	large subunit ribosomal protein LP2; Provisional	83.84
cd05833	109	Ribosomal_P2 Ribosomal protein P2. This subfamily	83.69

>PTZ00373 60S Acidic ribosomal protein P2; Provisional

Probab=100.00  E-value=9.6e-45  Score=254.71  Aligned_cols=110  Identities=56%  Similarity=0.872  Sum_probs=86.5

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG   80 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a   80 (113)
                      ||||||||||+|+||.+||++||++||+++|++||++|+++|++.|+||||++||++|++||+||  ||+++++++++++
T Consensus         3 MkyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~GKdI~ELIa~G~~kl~sv--gg~~~aa~a~a~~   80 (112)
T PTZ00373          3 MKYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHELIAAGMKKLQNI--GGGVAAAAAPAAG   80 (112)
T ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHhHHHHhcc--cCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999  3332211111111


Q ss_pred             CCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702           81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      ++++++++ ++++++|+|++|||||||||||||
T Consensus        81 ~~~~~~~~-~~~~e~k~ee~ee~ddDmgf~LFd  112 (112)
T PTZ00373         81 AATAGAKA-EAKKEEKKEEEEEEEDDLGFSLFG  112 (112)
T ss_pred             ccccccch-hhhhhhcccccccccccccccccC
Confidence            11121112 233344556667889999999998

>PLN00138 large subunit ribosomal protein LP2; Provisional

Probab=100.00  E-value=3.3e-44  Score=252.38  Aligned_cols=112  Identities=87%  Similarity=1.188  Sum_probs=89.5

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG   80 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a   80 (113)
                      ||||+|||||+|+||.+||++||++||+++|++||++|+++|++.|+||||++||.+|++||+++|+||+++++++++++
T Consensus         1 mkyvaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~gK~i~eLIa~G~~kl~sv~~gg~aa~a~a~a~~   80 (113)
T PLN00138          1 MKVVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAAAPA   80 (113)
T ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcCCCHHHHHHhchhccccCCCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998764332211111


Q ss_pred             C-CCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702           81 G-AGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        81 ~-~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      + +++++++ ++++++++|++||+||||||||||
T Consensus        81 ~~~~~~~~~-~~~~e~k~e~eeE~ddDmGfgLFd  113 (113)
T PLN00138         81 AGGAAAPAA-EAKKEEKVEEKEESDDDMGFSLFD  113 (113)
T ss_pred             ccccccccc-chhhhhhccccccccccccccccC
Confidence            1 1111122 222334456667889999999998

>cd05833 Ribosomal_P2 Ribosomal protein P2

Probab=100.00  E-value=7.2e-43  Score=244.27  Aligned_cols=109  Identities=65%  Similarity=0.957  Sum_probs=86.4

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG   80 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a   80 (113)
                      ||||||||||+++||.+||++||++||+++|++|+++|+++|++.|+||||++||++|++||+++|+++++++ ++++  
T Consensus         1 MkyvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~GKdi~eLIa~g~~kl~s~~~~~~~aa-~a~~--   77 (109)
T cd05833           1 MKYVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEELIAAGKEKLASVPAGAGGAA-PAAA--   77 (109)
T ss_pred             CHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHhHhhhcCCCccccccc-cccc--
Confidence            9999999999999999999999999999999999999999999999999999999999999999985433221 1111  


Q ss_pred             CCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702           81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      +++++ +++++++++|+|++||+||||||||||
T Consensus        78 ~~a~a-a~~~~~e~kkee~eee~ddDmGf~LFd  109 (109)
T cd05833          78 AAAAA-AAAAKKEEKKEESEEESDDDMGFGLFD  109 (109)
T ss_pred             ccccc-ccchhhhhhccCCccccccccCCCCCC
Confidence            11111 111233444555566679999999998

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2

>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.2e-42  Score=240.83  Aligned_cols=111  Identities=78%  Similarity=1.103  Sum_probs=91.0

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCC-CC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAP-SA   79 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa-~~   79 (113)
                      ||||+||||+.|+||.+|++.||++||.++|+++|+.|+++|++.|+||||+|||++|++||++||+||++++++++ ++
T Consensus         1 MkyvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK~i~ElIA~G~eklAsvpsGGa~~aaa~~aag   80 (112)
T KOG3449|consen    1 MKYVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGKDIEELIAAGREKLASVPSGGAVAAAAAPAAG   80 (112)
T ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCCCHHHHHHHhHHHHhcCCCCCccccccCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999885322211 11


Q ss_pred             CCCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702           80 GGAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        80 a~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      +++++++.  ..++++|+|++|||||||||+|||
T Consensus        81 gaa~aa~~--a~~~e~keEe~eesddDmgf~lFd  112 (112)
T KOG3449|consen   81 GAAGAAPA--AAKEEEKEEEKEESDDDMGFGLFD  112 (112)
T ss_pred             CCccCCcc--chhhhhhhhhcccccccccccccC
Confidence            11112211  223445556668999999999998

>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p

Probab=100.00  E-value=2.5e-39  Score=225.12  Aligned_cols=105  Identities=42%  Similarity=0.674  Sum_probs=86.1

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG   80 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a   80 (113)
                      |+|++|||||+++|+. ||++||++||+++|++|+++|+++|++.|+||||++||.+|+.||+++|+||++++ ++ + +
T Consensus         1 m~~v~A~Lll~~~g~~-~ta~~I~~IL~aaGveVe~~~~~~~~~aLaGk~V~eli~~g~~kl~~~~~~~~a~~-~a-~-~   76 (105)
T cd04411           1 MEYVAAYLLLHKGGKE-LTEDKIKELLSAAGAEIEPERVKLFLSALNGKNIDEVISKGKELMSSQAAAAAAPA-AT-A-A   76 (105)
T ss_pred             CHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcCCCHHHHHHHHHhhccCCCCcccccc-cc-c-c
Confidence            9999999999999987 99999999999999999999999999999999999999999999999998765321 11 1 1


Q ss_pred             CCCCCcchhhhhhhhhhhcccccccccCCCCC
Q 033702           81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLF  112 (113)
Q Consensus        81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLF  112 (113)
                        ++++++ ++++++|+|++||||||||||||
T Consensus        77 --~~~~~~-~~~~e~k~ee~eE~dddmgf~LF  105 (105)
T cd04411          77 --ATAEPA-EKAEEAKEEEEEEEDEDFGFGLF  105 (105)
T ss_pred             --ccccch-hhhhhhhcccccccccccCcccC
Confidence              111111 23334455667888999999999

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.2e-32  Score=189.51  Aligned_cols=108  Identities=40%  Similarity=0.607  Sum_probs=84.3

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG   80 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a   80 (113)
                      |+||++||||+++|+ +||++||++||+++|++||+.|++.|++.|+||||+++|.++..++..++.+++++++++    
T Consensus         1 MeYi~a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg~~idE~i~~~~~~~~a~a~a~aaaa~~A----   75 (109)
T COG2058           1 MEYIYAYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEGVDIDEVIKNAAEAPAAAAAAGAAAAAAA----   75 (109)
T ss_pred             ChHHHHHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcCCCHHHHHHHhcccccccCCccccccccc----
Confidence            999999999999998 799999999999999999999999999999999999999999887777765544332111    


Q ss_pred             CCCCCcch-hhhhhhhhhhcccccccccCCCCCC
Q 033702           81 GAGAAPAA-AEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        81 ~~~~a~a~-~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      ++.+++.. +.++++++++.+||+|+||||+|||
T Consensus        76 ~~~~a~~~~ea~eEe~eEe~~EE~~~~~lf~LF~  109 (109)
T COG2058          76 GAEAAAEADEAEEEEKEEEAEEESDDDMLFGLFG  109 (109)
T ss_pred             ccccccchhhHHHHHhhhchhhcccccchhhccC
Confidence            11111111 1223334555668889999999998

>cd05831 Ribosomal_P1 Ribosomal protein P1

Probab=99.96  E-value=3e-29  Score=173.89  Aligned_cols=99  Identities=42%  Similarity=0.632  Sum_probs=69.0

Q ss_pred             HHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCCCCC
Q 033702            5 AAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAGGAG   83 (113)
Q Consensus         5 aAYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a~~~   83 (113)
                      ..|+.|+|++ +++||++||++||+++|++|+++|+++|++.|+||||++||.       +++++|+++++++++ ++++
T Consensus         4 c~yAaLiL~d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~gk~i~elIa-------~~~~~~~~aap~a~~-a~~~   75 (103)
T cd05831           4 CTYAALILHDDGIEITADNINALLKAAGVNVEPYWPGLFAKALEGKDIKDLLS-------NVGGGGGGAAPAAAA-AAAA   75 (103)
T ss_pred             HHHHHHHHccCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcCCCHHHHhh-------ccccccccccccccc-cccc
Confidence            3455555555 678999999999999999999999999999999999999998       454443321111111 1111


Q ss_pred             CCcchhhhhhhhhhhcccccccccCCCCC
Q 033702           84 AAPAAAEAKKEEKVEEKEESDDDMGFSLF  112 (113)
Q Consensus        84 ~a~a~~~~~~e~k~eeeeE~ddDmGfgLF  112 (113)
                      ++ .++++++++|+|++||+|||||||||
T Consensus        76 ~~-~~~~~~~~kk~e~eee~d~dmgfglF  103 (103)
T cd05831          76 AA-AAEAKKEEKKEEEEEESDDDMGFGLF  103 (103)
T ss_pred             cc-cccchhhhcccccccccccccccccC
Confidence            11 12123344556667778999999999

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and

>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed

Probab=99.96  E-value=9.7e-29  Score=172.19  Aligned_cols=55  Identities=25%  Similarity=0.457  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHH
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA   56 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~   56 (113)
                      |||++|||||+++|+ +||++||++||+++|++|+++|+++|++.|+||||++||.
T Consensus         1 M~yiyAaLLL~~~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~GkdIeElI~   55 (106)
T PRK06402          1 MEYIYAALLLHSAGK-EINEDNLKKVLEAAGVEVDEARVKALVAALEDVNIEEAIK   55 (106)
T ss_pred             CHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999998 7999999999999999999999999999999999999997

>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.9e-27  Score=166.73  Aligned_cols=102  Identities=42%  Similarity=0.615  Sum_probs=76.0

Q ss_pred             HHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccC--C-CCC
Q 033702            5 AAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAA--P-SAG   80 (113)
Q Consensus         5 aAYlll~l~g-~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~a--a-~~a   80 (113)
                      ..|.-|+|.. ...||.++|..|+|++|++|+++||.+|+++|.++||.+||+       |+++||+++++++  + .++
T Consensus         9 c~yaalIL~d~~i~it~dki~tl~kaa~v~ve~~Wp~lfakale~vni~~li~-------n~gag~~a~a~~~~~~~~aa   81 (114)
T KOG1762|consen    9 CSYAALILHDDEIEVTADKINTLTKAAGVNVEPYWPGLFAKALEGVNIKELIC-------NVGAGGGALAAGAAAAGGAA   81 (114)
T ss_pred             HhhhhhhccccceeeehhhhhhHHHhccCcccccchhHHHHHhccCChHHHHH-------hcccCCccCCCccccccccc
Confidence            3456666655 578999999999999999999999999999999999999999       7877665543222  1 111


Q ss_pred             CCCCCcchhhhhhhhhhhcccccccccCCCCCC
Q 033702           81 GAGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        81 ~~~~a~a~~~~~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      +++++++.++++++.|+|+.||+||||||||||
T Consensus        82 ~~~~aA~~~Ekk~eak~EeseesddDmgfGLfd  114 (114)
T KOG1762|consen   82 AAGGAAAAEEKKEEAKKEESEESDDDMGFGLFD  114 (114)
T ss_pred             cccccccchHHHHHhhhhhhcccccccccCCCC
Confidence            111222332445556677789999999999998

>TIGR03685 L21P_arch 50S ribosomal protein L12P

Probab=99.92  E-value=5.9e-25  Score=152.94  Aligned_cols=55  Identities=25%  Similarity=0.494  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHH
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA   56 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~   56 (113)
                      |||++|||||+++|+ +||.++|++||+++||+|+++|+.+|++.|+||+|++||.
T Consensus         1 M~yvyA~Lll~~~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~gk~i~eli~   55 (105)
T TIGR03685         1 MEYIYAALLLHSAGK-EINEENLKAVLEAAGVEVDEARVKALVAALEGVNIEEAIK   55 (105)
T ss_pred             CHHHHHHHHHHhcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999998 7999999999999999999999999999999999999997

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.

>cd05832 Ribosomal_L12p Ribosomal protein L12p

Probab=99.91  E-value=8.2e-25  Score=152.49  Aligned_cols=55  Identities=24%  Similarity=0.448  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHH
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA   56 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~   56 (113)
                      |||++|||||+++|+ +||+++|++||+++|++|+++|+.+|++.|+|+||+++|.
T Consensus         1 M~yvyAaLLL~~~G~-eITae~I~~IL~AAGveVd~~~~~ala~aL~gkdIeElIa   55 (106)
T cd05832           1 MEYIYAALLLHYAGK-EINEENLKKVLEAAGIEVDEARVKALVAALEEVNIDEAIK   55 (106)
T ss_pred             CHHHHHHHHHHhcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999998 7999999999999999999999999999999999999998

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.89  E-value=4.3e-25  Score=148.46  Aligned_cols=87  Identities=52%  Similarity=0.748  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCCccccccCCCCCCCCCCcchhhhhhhhh
Q 033702           17 SPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAGGAGAAPAAAEAKKEEK   96 (113)
Q Consensus        17 ~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg~a~a~~aa~~a~~~~a~a~~~~~~e~k   96 (113)
                      +||.++|++||+++|++|+++|+.+|++.|++++|++||+++..+|...      +++++++   +++.++++++++++|
T Consensus         1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~~~~~------aaa~aaa---~aa~~~a~a~~e~kk   71 (88)
T PF00428_consen    1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAGMAAA------AAAAAAA---AAAAAAAAAAEEEKK   71 (88)
T ss_dssp             S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH------HHHTTSS---HHHHHHHHHHSTTHH
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccccccccc------ccccccc---cccccccccchhccc
Confidence            4899999999999999999999999999999999999999998877611      1111111   011111112222222


Q ss_pred             hhcc-cccccccCCCCC
Q 033702           97 VEEK-EESDDDMGFSLF  112 (113)
Q Consensus        97 ~eee-eE~ddDmGfgLF  112 (113)
                      ++++ ||+|+|||||||
T Consensus        72 EeeeeEEed~dmGf~LF   88 (88)
T PF00428_consen   72 EEEEEEEEDDDMGFGLF   88 (88)
T ss_dssp             HHT--SS-SSSSSTTTT
T ss_pred             ccccccccccccCcCCC
Confidence            2322 688999999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=98.98  E-value=3.6e-10  Score=91.14  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHhhcC
Q 033702           21 DDIKGILGSVGADCEDNRLELLLSEVKG   48 (113)
Q Consensus        21 e~I~kvl~aaGveve~~~~~~f~~~L~g   48 (113)
                      -+|.+|..++|+.++++|+.+|++++++
T Consensus       220 ~~i~als~aag~pt~~s~p~~ia~a~k~  247 (310)
T PTZ00135        220 QNVAAISLAAGYPTEASAPHSILNAFKN  247 (310)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            3677889999999999999999998743

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=98.00  E-value=9.6e-06  Score=66.12  Aligned_cols=16  Identities=50%  Similarity=0.918  Sum_probs=12.2

Q ss_pred             hhcccccccccCCC-CC
Q 033702           97 VEEKEESDDDMGFS-LF  112 (113)
Q Consensus        97 ~eeeeE~ddDmGfg-LF  112 (113)
                      +|+|||+||||||| ||
T Consensus       307 ~~~~e~~~~d~~~~~~~  323 (323)
T PTZ00240        307 EEEEESDEDDFGMGALF  323 (323)
T ss_pred             cCCccCcccccCccccC
Confidence            46667788999997 55

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=96.96  E-value=0.0023  Score=52.02  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcC-CChHHHHHh
Q 033702            5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIAS   57 (113)
Q Consensus         5 aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~g-k~v~eLI~~   57 (113)
                      -|..|.+-.+  =||.+.|..||..+     ......++..+.+ .++.+-|.+
T Consensus       244 ~a~aLa~~~~--~~t~e~~~~il~kA-----~~~~~ala~~~~~~~~~~~~~~~  290 (330)
T PRK04019        244 EAKALAVEAG--IVTPETADDILSKA-----VAQALALAAALADKDALDEELKE  290 (330)
T ss_pred             HHHHHHHHcC--CCChhhHHHHHHHH-----HHHHHHHHHHhcCcccccHHHHh
Confidence            3445555553  38999999999999     5667788999999 999988873

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.0062  Score=42.86  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=22.5

Q ss_pred             HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702           26 ILGSVGADCEDNRLELLLSEVKGKDITE   53 (113)
Q Consensus        26 vl~aaGveve~~~~~~f~~~L~gk~v~e   53 (113)
                      +|..+|-+++...++.+.+. -|.+|++
T Consensus         9 lL~~agkei~e~~l~~vl~a-aGveve~   35 (109)
T COG2058           9 LLHLAGKEITEDNLKSVLEA-AGVEVEE   35 (109)
T ss_pred             HHHHccCcCCHHHHHHHHHH-cCCCccH
Confidence            68889999999999988886 4888765

>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]

Probab=95.16  E-value=0.11  Score=36.77  Aligned_cols=19  Identities=11%  Similarity=0.195  Sum_probs=16.6

Q ss_pred             CCCCCHHHHHHHHHhcCCC
Q 033702           15 NTSPSADDIKGILGSVGAD   33 (113)
Q Consensus        15 ~~~~t~e~I~kvl~aaGve   33 (113)
                      ..+++.+.|++||+.....
T Consensus        31 G~E~d~e~i~~visel~GK   49 (112)
T KOG3449|consen   31 GAEIDDERINLVLSELKGK   49 (112)
T ss_pred             CcccCHHHHHHHHHHhcCC
Confidence            4679999999999999875

>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p

Probab=94.87  E-value=0.082  Score=36.76  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             HHHhcCCCCCCHHHHHHHHHh-cCCCcchHH
Q 033702            9 LAVLGGNTSPSADDIKGILGS-VGADCEDNR   38 (113)
Q Consensus         9 ll~l~g~~~~t~e~I~kvl~a-aGveve~~~   38 (113)
                      +|...| .+++.+.++.++++ .|.+|+.-.
T Consensus        25 IL~aaG-veVe~~~~~~~~~aLaGk~V~eli   54 (105)
T cd04411          25 LLSAAG-AEIEPERVKLFLSALNGKNIDEVI   54 (105)
T ss_pred             HHHHcC-CCcCHHHHHHHHHHHcCCCHHHHH
Confidence            455555 57999999999999 889987755

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain

>cd05832 Ribosomal_L12p Ribosomal protein L12p

Probab=92.12  E-value=0.33  Score=33.98  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=20.5

Q ss_pred             HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702           26 ILGSVGADCEDNRLELLLSEVKGKDITE   53 (113)
Q Consensus        26 vl~aaGveve~~~~~~f~~~L~gk~v~e   53 (113)
                      ||.-.|.++....++.+++. .|.+|++
T Consensus         9 LL~~~G~eITae~I~~IL~A-AGveVd~   35 (106)
T cd05832           9 LLHYAGKEINEENLKKVLEA-AGIEVDE   35 (106)
T ss_pred             HHHhcCCCCCHHHHHHHHHH-hCCcccH
Confidence            57778888888888888876 4666654

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera

>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed

Probab=90.76  E-value=0.63  Score=32.56  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=15.7

Q ss_pred             HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702           26 ILGSVGADCEDNRLELLLSEVKGKDITE   53 (113)
Q Consensus        26 vl~aaGveve~~~~~~f~~~L~gk~v~e   53 (113)
                      ||.-.|.++...-++.++++ .|.+|++
T Consensus         9 LL~~~g~~it~e~I~~IL~A-AGveVee   35 (106)
T PRK06402          9 LLHSAGKEINEDNLKKVLEA-AGVEVDE   35 (106)
T ss_pred             HHHhcCCCCCHHHHHHHHHH-cCCCccH
Confidence            45555666666666666665 3455554

>TIGR03685 L21P_arch 50S ribosomal protein L12P

Probab=87.33  E-value=0.78  Score=31.88  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=18.8

Q ss_pred             HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702           26 ILGSVGADCEDNRLELLLSEVKGKDITE   53 (113)
Q Consensus        26 vl~aaGveve~~~~~~f~~~L~gk~v~e   53 (113)
                      ||.-.|.++....++.++++ .|.+|++
T Consensus         9 ll~~~g~~iT~e~I~~IL~A-AGv~ve~   35 (105)
T TIGR03685         9 LLHSAGKEINEENLKAVLEA-AGVEVDE   35 (105)
T ss_pred             HHHhcCCCCCHHHHHHHHHH-hCCcccH
Confidence            56667778888888877776 4555554

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.

>cd05831 Ribosomal_P1 Ribosomal protein P1

Probab=86.26  E-value=1.8  Score=29.82  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             HHHhcCCCcchHHHHHHHHhhcCCChHH
Q 033702           26 ILGSVGADCEDNRLELLLSEVKGKDITE   53 (113)
Q Consensus        26 vl~aaGveve~~~~~~f~~~L~gk~v~e   53 (113)
                      ||...|.++....++..+++. |.++++
T Consensus        10 iL~d~~~~~Tae~I~~ilkAa-Gveve~   36 (103)
T cd05831          10 ILHDDGIEITADNINALLKAA-GVNVEP   36 (103)
T ss_pred             HHccCCCCCCHHHHHHHHHHc-CCcccH
Confidence            677778888888888887764 566664

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and

>PTZ00373 60S Acidic ribosomal protein P2; Provisional

Probab=84.75  E-value=0.55  Score=33.13  Aligned_cols=27  Identities=7%  Similarity=0.074  Sum_probs=18.8

Q ss_pred             HHHhcCCCCCCHHHHHHHHHhcCC-Ccch
Q 033702            9 LAVLGGNTSPSADDIKGILGSVGA-DCED   36 (113)
Q Consensus         9 ll~l~g~~~~t~e~I~kvl~aaGv-eve~   36 (113)
                      +|...| .++..+.++.+++...- +|+.
T Consensus        28 IL~AaG-veVd~~~~~l~~~~L~GKdI~E   55 (112)
T PTZ00373         28 VLSAVN-ADVEDDVLDNFFKSLEGKTPHE   55 (112)
T ss_pred             HHHHcC-CCccHHHHHHHHHHHcCCCHHH
Confidence            344454 56899999999998764 4444

>PLN00138 large subunit ribosomal protein LP2; Provisional

Probab=83.84  E-value=0.92  Score=31.95  Aligned_cols=22  Identities=23%  Similarity=0.210  Sum_probs=15.2

Q ss_pred             HHhcCCCCCCHHHHHHHHHhcCC
Q 033702           10 AVLGGNTSPSADDIKGILGSVGA   32 (113)
Q Consensus        10 l~l~g~~~~t~e~I~kvl~aaGv   32 (113)
                      |...| .++..+.++.+++...-
T Consensus        27 L~AaG-vevd~~~~~~f~~~L~g   48 (113)
T PLN00138         27 LGSVG-ADADDDRIELLLSEVKG   48 (113)
T ss_pred             HHHcC-CcccHHHHHHHHHHHcC
Confidence            34444 56788888888887754

>cd05833 Ribosomal_P2 Ribosomal protein P2

Probab=83.69  E-value=4.3  Score=28.31  Aligned_cols=22  Identities=5%  Similarity=0.139  Sum_probs=14.5

Q ss_pred             HHhcCCCCCCHHHHHHHHHhcCC
Q 033702           10 AVLGGNTSPSADDIKGILGSVGA   32 (113)
Q Consensus        10 l~l~g~~~~t~e~I~kvl~aaGv   32 (113)
                      |.-.| .++..+.+..++++...
T Consensus        27 L~AaG-veVe~~~~~lf~~~L~G   48 (109)
T cd05833          27 LGSVG-VEVDDEKLNKVISELEG   48 (109)
T ss_pred             HHHcC-CCccHHHHHHHHHHHcC
Confidence            44444 56777788888877654

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
3izr_v	113	Localization Of The Large Subunit Ribosomal Protein		5e-18
2w1o_A	70	Nmr Structure Of Dimerization Domain Of Human Ribos		3e-13
3izs_v	106	Localization Of The Large Subunit Ribosomal Protein		1e-05

>pdb|3IZR|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 113

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 61/113 (53%)
Query: 1   MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
           MK +AAYLLA L GN SPSA+D+  IL SVG + ++ ++EL+LS+VKGKDITEL+A+GRE
Sbjct: 1   MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGRE 60
Query: 61  KLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 113
           K                                          DDDMGFSLFD
Sbjct: 61  KFAAVPSGGGGVAVSAAAPAAGGAAAPAAESKKEEKVVEKEESDDDMGFSLFD 113

>pdb|2W1O|A Chain A, Nmr Structure Of Dimerization Domain Of Human Ribosomal Protein P2 Length = 70

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 1  MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
          M+ VA+YLLA LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  
Sbjct: 2  MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 61
Query: 61 KL 62
          KL
Sbjct: 62 KL 63

>pdb|3IZS|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 62
          GNT P A  IK IL SVG + ED ++  +LS ++GK + ELI  G EKL
Sbjct: 14 GNT-PDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
3iz5_v	113	60S acidic ribosomal protein P21 - P2 (L12P); euka	100.0
3izc_v	106	60S acidic ribosomal protein (P2); eukaryotic ribo	100.0
3izc_t	106	60S acidic ribosomal protein RPP11 (P1); eukaryoti	100.0
3iz5_t	110	60S acidic ribosomal protein P11 - P1 (L12P); euka	100.0
2lbf_B	70	60S acidic ribosomal protein P2; ribosome, stalk,	99.96
3a1y_A	58	50S ribosomal protein P1 (L12P); stalk, helix SPIN	99.86
2lbf_A	69	60S acidic ribosomal protein P1; ribosome, stalk,	99.79
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	98.99
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	98.93
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	98.8
3iz5_t	110	60S acidic ribosomal protein P11 - P1 (L12P); euka	92.88
3izc_t	106	60S acidic ribosomal protein RPP11 (P1); eukaryoti	89.23
3iz5_v	113	60S acidic ribosomal protein P21 - P2 (L12P); euka	84.0

>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A

Probab=99.96  E-value=3.3e-29  Score=162.31  Aligned_cols=69  Identities=61%  Similarity=0.964  Sum_probs=67.5

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG   69 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg   69 (113)
                      |||+||||||+++|+.+||++||++||+++|++||++|+++|+++|+||||+|||.+|++||+++|+||
T Consensus         2 M~yvyA~Lll~~~g~~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~g~~kl~s~p~gg   70 (70)
T 2lbf_B            2 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG   70 (70)
T ss_dssp             CCTHHHHHHHHHHTCSSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTTCSSSCSSCCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999889999999999999999999999999999999999999999999999999875

>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.86  E-value=1.3e-21  Score=122.39  Aligned_cols=56  Identities=29%  Similarity=0.478  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHh
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIAS   57 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~   57 (113)
                      |+|++||+||+..|+ +||++||++||+++|++||++|+.+|+++|+||||+|||++
T Consensus         1 m~~~yAallL~~~g~-~~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~   56 (58)
T 3a1y_A            1 MEYVYAALLLHSVGK-EINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK   56 (58)
T ss_dssp             CHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence            999999999999986 79999999999999999999999999999999999999973

>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}

Probab=99.79  E-value=8.6e-20  Score=117.66  Aligned_cols=61  Identities=20%  Similarity=0.320  Sum_probs=54.2

Q ss_pred             ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchHHHHHHHHhhcCCChHHHHHhhhhhhccCCCCC
Q 033702            1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG   69 (113)
Q Consensus         1 m~y~aAYlll~l~g~~~~t~e~I~kvl~aaGveve~~~~~~f~~~L~gk~v~eLI~~G~~kl~~~~~gg   69 (113)
                      |.|++|-+||+..| .+||++||++||+++|++||++|+.+|+++|+||||++||.       ++++||
T Consensus         7 la~~YAAllL~~~g-~~~ta~~I~~il~AaGveve~~~~~lf~~aL~gk~I~elI~-------~~g~g~   67 (69)
T 2lbf_A            7 LACIYSALILHDDE-VTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLIC-------NVGAGG   67 (69)
T ss_dssp             HHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGGT-------TTTCCC
T ss_pred             HHHHHHHHHHHcCC-CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHH-------hccCCC
Confidence            35788888888887 58999999999999999999999999999999999999997       676554

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=98.93  E-value=7.3e-12  Score=100.00  Aligned_cols=22  Identities=68%  Similarity=0.987  Sum_probs=8.7

Q ss_pred             hhhhhhhcccccccccCCCCCC
Q 033702           92 KKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        92 ~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      ++++++||+|||||||||||||
T Consensus       296 ~~~~~~ee~ee~d~d~gf~lfd  317 (317)
T 2zkr_g          296 AKVEAKEESEESDEDMGFGLFD  317 (317)
T ss_dssp             HSTTHHHHTSSCC---------
T ss_pred             ccccccCCccccccccCcCCCC
Confidence            3445556778899999999998

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=98.80  E-value=5.3e-10  Score=89.08  Aligned_cols=22  Identities=68%  Similarity=1.060  Sum_probs=0.0

Q ss_pred             hhhhhhhcccccccccCCCCCC
Q 033702           92 KKEEKVEEKEESDDDMGFSLFD  113 (113)
Q Consensus        92 ~~e~k~eeeeE~ddDmGfgLFd  113 (113)
                      ++++++|++|||||||||||||
T Consensus       291 ~~~~~~e~~ee~d~d~gf~lfd  312 (312)
T 3u5i_q          291 AEEAAAEEEEESDDDMGFGLFD  312 (312)
T ss_dssp             ----------------------
T ss_pred             cccccccccccccccCCCCCCC
Confidence            3345566778889999999998

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00