Citrus Sinensis ID: 033732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccEEEEEEHHccccHHHEHHHcccccHHHHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHcccccccEEEEEHEHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MASSSNSSQQEAVMRkqnngppykflvpliyapvlpliriglrknpvvrDRLFTAVLAGAFAHGFYLVYPLFYsidcfagqfncWFFYMVDYLLIGNYIAPLHVLLMCSILY
Flexible Loop (DISEMBL)
masssnssqQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Low Complexity Region (SEG)
MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Disordered region (IsUnstruct)
**********************YKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSIL*
Disordered Region (DISOPRED)
**********************YKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Disordered Region (DISEMBL)
***************KQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Disordered Region (DISPRO)
****************QNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFYLVYPLFYSIDCFAGQFNCWFFYMVDYLLIGNYIAPLHVLLMCSILY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
255638790	77	unknown [Glycine max]	0.642	0.935	0.75	9e-24
356511636	77	PREDICTED: uncharacterized protein LOC10	0.642	0.935	0.75	1e-23
255566911	80	conserved hypothetical protein [Ricinus	0.589	0.825	0.757	2e-22
224113881	79	predicted protein [Populus trichocarpa]	0.660	0.936	0.697	8e-22
449443113	130	PREDICTED: uncharacterized protein LOC10	0.571	0.492	0.818	3e-21
388493172	80	unknown [Lotus japonicus]	0.633	0.887	0.704	6e-19
297838633	75	hypothetical protein ARALYDRAFT_315886 [	0.625	0.933	0.652	1e-17
359484648	77	PREDICTED: uncharacterized protein LOC10	0.642	0.935	0.625	1e-17
18409091	75	uncharacterized protein [Arabidopsis tha	0.625	0.933	0.638	8e-17
413944674	94	hypothetical protein ZEAMMB73_342548 [Ze	0.616	0.734	0.638	4e-16

>gi|255638790|gb|ACU19699.1| unknown [Glycine max]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%)

Query: 1  MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
          MA+ S+ S QEAV+R++NNGPP KFL+PLIYAPVLPLIR+ LR  PV+RDRLFTAVLAGA
Sbjct: 1  MATPSDPSNQEAVVRRRNNGPPIKFLLPLIYAPVLPLIRLSLRHKPVLRDRLFTAVLAGA 60

Query: 61 FAHGFYLVYPLF 72
          FAHGFYLV  L+
Sbjct: 61 FAHGFYLVTDLY 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511636|ref|XP_003524529.1| PREDICTED: uncharacterized protein LOC100820016 [Glycine max]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%)

Query: 1  MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
          MA+ S+ S QEAV+R++NNGPP KFL+PLIYAPVLPLIR+ LR  PV+RDRLFTAVLAGA
Sbjct: 1  MATPSDPSNQEAVVRRRNNGPPIKFLLPLIYAPVLPLIRLSLRHKPVLRDRLFTAVLAGA 60

Query: 61 FAHGFYLVYPLF 72
          FAHGFYLV  L+
Sbjct: 61 FAHGFYLVTDLY 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566911|ref|XP_002524438.1| conserved hypothetical protein [Ricinus communis] gi|223536226|gb|EEF37878.1| conserved hypothetical protein [Ricinus communis]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 59/66 (89%)

Query: 7  SSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGFY 66
          S +++  +RKQNNGPP KFLVPL+YAP+LPLIRI LR+NPVVRDRLFTAVLAGAFAHGFY
Sbjct: 10 SVRRDVAVRKQNNGPPVKFLVPLVYAPILPLIRIALRRNPVVRDRLFTAVLAGAFAHGFY 69

Query: 67 LVYPLF 72
          LV  ++
Sbjct: 70 LVTDIY 75

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113881|ref|XP_002316603.1| predicted protein [Populus trichocarpa] gi|118483510|gb|ABK93653.1| unknown [Populus trichocarpa] gi|222859668|gb|EEE97215.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 62/76 (81%), Gaps = 2/76 (2%)

Query: 1  MASSSNSSQQEAV--MRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLA 58
          MAS S+ +  EA   +R++ NGPP KFLVPL+YAPVLPLIR+ LRKNPVVRDRLFTAVL 
Sbjct: 1  MASPSDPTNPEAAAAIRRKKNGPPIKFLVPLVYAPVLPLIRLTLRKNPVVRDRLFTAVLV 60

Query: 59 GAFAHGFYLVYPLFYS 74
          GAFAHGFYLV  ++ S
Sbjct: 61 GAFAHGFYLVTDIYDS 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443113|ref|XP_004139325.1| PREDICTED: uncharacterized protein LOC101204118 isoform 1 [Cucumis sativus] gi|449443115|ref|XP_004139326.1| PREDICTED: uncharacterized protein LOC101204118 isoform 2 [Cucumis sativus] gi|449509449|ref|XP_004163592.1| PREDICTED: uncharacterized protein LOC101231537 isoform 1 [Cucumis sativus] gi|449509451|ref|XP_004163593.1| PREDICTED: uncharacterized protein LOC101231537 isoform 2 [Cucumis sativus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%), Gaps = 2/66 (3%)

Query: 6  NSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAFAHGF 65
          + S +EA  RKQ+   PYKFLVPL+YAPVLPLIRI LRKNPVVRDRLFTAVLAGAFAHGF
Sbjct: 7  DPSSREAFPRKQSA--PYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 64

Query: 66 YLVYPL 71
          YLVYPL
Sbjct: 65 YLVYPL 70

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493172|gb|AFK34652.1| unknown [Lotus japonicus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 56/71 (78%)

Query: 2  ASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGAF 61
          + S +   QE V+RK+NNG P KFL+PLIYAPVLPLIRI LR  PVVRDRLF AVLAGAF
Sbjct: 5  SESFDPFNQEPVVRKKNNGAPIKFLLPLIYAPVLPLIRIALRHKPVVRDRLFFAVLAGAF 64

Query: 62 AHGFYLVYPLF 72
          AHG YLV  L+
Sbjct: 65 AHGSYLVTDLY 75

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838633|ref|XP_002887198.1| hypothetical protein ARALYDRAFT_315886 [Arabidopsis lyrata subsp. lyrata] gi|297333039|gb|EFH63457.1| hypothetical protein ARALYDRAFT_315886 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 1  MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
          MASSS+ S+   VM ++  G P KFLVPLIYAP LPLIR+ LR  PV+RDRLF  VLAGA
Sbjct: 1  MASSSDPSK--TVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLAGA 58

Query: 61 FAHGFYLVYPLF 72
          FAHGFYLV  ++
Sbjct: 59 FAHGFYLVTDIY 70

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484648|ref|XP_003633138.1| PREDICTED: uncharacterized protein LOC100854061 [Vitis vinifera] gi|297738906|emb|CBI28151.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 52/72 (72%)

Query: 1  MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
          M SSS+ SQ   V  K   GPP+   VPLIYAP+LP+IRI LRKNPV+RDRLF  VLAGA
Sbjct: 1  MDSSSHPSQTGDVAWKHKRGPPFALFVPLIYAPILPIIRITLRKNPVLRDRLFYGVLAGA 60

Query: 61 FAHGFYLVYPLF 72
          F HG YL+  L+
Sbjct: 61 FGHGLYLITDLY 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409091|ref|NP_564939.1| uncharacterized protein [Arabidopsis thaliana] gi|21593844|gb|AAM65811.1| unknown [Arabidopsis thaliana] gi|88010900|gb|ABD38870.1| At1g68680 [Arabidopsis thaliana] gi|332196706|gb|AEE34827.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 1  MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
          MASSS+ S+   VM ++  G P KFLVPLIYAP LPLIR+ LR  PV+RDRLF  VL GA
Sbjct: 1  MASSSDPSK--PVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGA 58

Query: 61 FAHGFYLVYPLF 72
          FAHGFYLV  ++
Sbjct: 59 FAHGFYLVTDIY 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944674|gb|AFW77323.1| hypothetical protein ZEAMMB73_342548 [Zea mays]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 52/72 (72%), Gaps = 3/72 (4%)

Query: 1  MASSSNSSQQEAVMRK---QNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVL 57
          MA SS+     A +R+       PPY  L+PL+YAPVLPLIRIGLR NPVVRDRLF  VL
Sbjct: 1  MAPSSSRFDDPAAVRRPPQHERKPPYMLLLPLVYAPVLPLIRIGLRHNPVVRDRLFYGVL 60

Query: 58 AGAFAHGFYLVY 69
          AGAFAHG YL+Y
Sbjct: 61 AGAFAHGAYLMY 72

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2026930	75	AT1G68680 "AT1G68680" [Arabido	0.625	0.933	0.638	1.7e-18

TAIR|locus:2026930 AT1G68680 "AT1G68680" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/72 (63%), Positives = 54/72 (75%)

Query:     1 MASSSNSSQQEAVMRKQNNGPPYKFLVPLIYAPVLPLIRIGLRKNPVVRDRLFTAVLAGA 60
             MASSS+ S+   VM ++  G P KFLVPLIYAP LPLIR+ LR  PV+RDRLF  VL GA
Sbjct:     1 MASSSDPSKP--VMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGA 58

Query:    61 FAHGFYLVYPLF 72
             FAHGFYLV  ++
Sbjct:    59 FAHGFYLVTDIY 70


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.146   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 21  0.49    29
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.81u 0.09s 11.90t   Elapsed:  00:00:00
  Total cpu time:  11.81u 0.09s 11.90t   Elapsed:  00:00:00
  Start:  Fri May 10 02:07:02 2013   End:  Fri May 10 02:07:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0046 SubName- Full=Putative uncharacterized protein; (79 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00