Citrus Sinensis ID: 034037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEccccccEEEccccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccEEEEccccccEEEccccccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKrkkfampcgvckgkgfyicklckgnatiewsplydpvfinpclcptcegnrvqRCLNCLGKGFD
Flexible Loop (DISEMBL)
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Low Complexity Region (SEG)
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Disordered region (IsUnstruct)
**LKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLG****
Disordered Region (DISOPRED)
******G*LGATAAIIFGGFVTLNVASTITLGALRAA******KFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKG**
Disordered Region (DISEMBL)
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Disordered Region (DISPRO)
*ILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
225429496	108	PREDICTED: uncharacterized protein LOC10	0.923	0.898	0.731	6e-38
356563041	105	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.685	1e-36
388521305	104	unknown [Lotus japonicus]	0.971	0.980	0.715	3e-36
356511646	105	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.676	4e-36
255566931	143	conserved hypothetical protein [Ricinus	1.0	0.734	0.676	2e-35
224072168	105	predicted protein [Populus trichocarpa]	1.0	1.0	0.657	7e-35
357477947	107	hypothetical protein MTR_4g113750 [Medic	0.885	0.869	0.731	2e-34
449520653	106	PREDICTED: uncharacterized LOC101203873	1.0	0.990	0.628	2e-34
449443111	106	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.619	5e-34
357135502	112	PREDICTED: uncharacterized protein LOC10	0.980	0.919	0.601	2e-32

>gi|225429496|ref|XP_002278376.1| PREDICTED: uncharacterized protein LOC100261115 [Vitis vinifera] gi|296081638|emb|CBI20643.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 88/97 (90%)

Query: 9   LGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNAT 68
           LGA  AII GG + L++AS++T+  LRAA++AKRKK A+PCGVC+GKG+YICKLCKGN+T
Sbjct: 12  LGAATAIISGGMLALSLASSLTMRTLRAAADAKRKKVALPCGVCRGKGYYICKLCKGNST 71

Query: 69  IEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           IEWSPLYDPV INPC+CPTC+GNRVQ+CLNCLGKG++
Sbjct: 72  IEWSPLYDPVVINPCVCPTCDGNRVQKCLNCLGKGYN 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563041|ref|XP_003549774.1| PREDICTED: uncharacterized protein LOC100776471 [Glycine max]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 86/105 (81%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           M L+ +G L   AA+IFGG  TLN+AS  T+  LR ASE KR+K A+PC VC+GKGFYIC
Sbjct: 1   MNLRPLGPLVRMAAVIFGGVATLNLASAATIKVLRFASEKKREKVALPCWVCRGKGFYIC 60

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLC GNATI WSP++DP+ +NPC+CPTCEGNRVQRCLNCLGKG+D
Sbjct: 61  KLCNGNATISWSPMFDPIAVNPCVCPTCEGNRVQRCLNCLGKGYD 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521305|gb|AFK48714.1| unknown [Lotus japonicus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 82/102 (80%)

Query: 4   KQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLC 63
           + +G     A +I GG  TLN+AST TL AL  ASE KRKK A+PC VC+GKGFYICKLC
Sbjct: 3   RGLGTWANGAVVILGGVFTLNIASTATLKALHFASEKKRKKVALPCLVCRGKGFYICKLC 62

Query: 64  KGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
            GNATI WSP+YDP+ INPCLCPTCEGNRVQRCLNCLGKG+D
Sbjct: 63  NGNATIAWSPMYDPIAINPCLCPTCEGNRVQRCLNCLGKGYD 104

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511646|ref|XP_003524534.1| PREDICTED: uncharacterized protein LOC100777454 [Glycine max]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 85/105 (80%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           M L+ +G L   A +IFGG  TLN+AS  T+  LR ASE KR+K A+PC VC+GKGFYIC
Sbjct: 1   MNLRPLGPLVRMAVVIFGGVATLNLASAATIKVLRFASEKKREKVALPCRVCRGKGFYIC 60

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLC GN+TI WSP++DP+ INPC+CPTCEGNRVQRCLNCLGKG+D
Sbjct: 61  KLCNGNSTISWSPMFDPIAINPCVCPTCEGNRVQRCLNCLGKGYD 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566931|ref|XP_002524448.1| conserved hypothetical protein [Ricinus communis] gi|223536236|gb|EEF37888.1| conserved hypothetical protein [Ricinus communis]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 83/105 (79%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           MI K +  L +  AI  GG V LN+ S+I +GA R ASE K +K A PCGVC+GKGFYIC
Sbjct: 39  MIPKPLRTLVSGTAIFLGGLVALNITSSIAIGAFRHASELKLRKNASPCGVCRGKGFYIC 98

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLCKGNATI+WSPLYDP+  NPCLCPTC+G+RVQRCLNCLGKG+ 
Sbjct: 99  KLCKGNATIKWSPLYDPIAFNPCLCPTCDGHRVQRCLNCLGKGYS 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072168|ref|XP_002303635.1| predicted protein [Populus trichocarpa] gi|222841067|gb|EEE78614.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 84/105 (80%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           MI K +  L    AII GG + LN+ S+I + ALR A++ K ++ A+PCG C+GKGFYIC
Sbjct: 1   MIPKPLRTLVTGTAIILGGVLALNITSSIAVNALRFATDLKLRRVALPCGACRGKGFYIC 60

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLCKGNA+I WSPLYDPV INPCLCPTC+GNRVQRCLNCLGKG++
Sbjct: 61  KLCKGNASIHWSPLYDPVAINPCLCPTCDGNRVQRCLNCLGKGYN 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477947|ref|XP_003609259.1| hypothetical protein MTR_4g113750 [Medicago truncatula] gi|355510314|gb|AES91456.1| hypothetical protein MTR_4g113750 [Medicago truncatula]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 78/93 (83%)

Query: 13  AAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWS 72
           A ++ GG  TLNVAST+TL  L  ASE KRKK A+PC  C+GKGFYICKLC GN+TI WS
Sbjct: 15  AFVVLGGIATLNVASTLTLKGLHFASENKRKKTALPCKSCRGKGFYICKLCSGNSTIAWS 74

Query: 73  PLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           P+YDPV INPC+CPTC+GNRVQRCLNCLGKG+D
Sbjct: 75  PMYDPVAINPCVCPTCDGNRVQRCLNCLGKGYD 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520653|ref|XP_004167348.1| PREDICTED: uncharacterized LOC101203873 [Cucumis sativus]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 84/105 (80%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           MI +Q+  +   AA+I GG  TLN+AS +T+  LR  +EAKR+K  +PC  C+GKGFY+C
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLC+GNA I+WSPL DP+ INPC+CPTCEGNRVQRCLNCLGKG++
Sbjct: 61  KLCRGNAVIQWSPLSDPIAINPCVCPTCEGNRVQRCLNCLGKGYE 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443111|ref|XP_004139324.1| PREDICTED: uncharacterized protein LOC101203873 [Cucumis sativus]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 84/105 (80%)

Query: 1   MILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYIC 60
           MI +Q+  +   AA+I GG  TLN+AS +T+  LR  +EAKR+K  +PC  C+GKGFY+C
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61  KLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGFD 105
           KLC+GNA I+WSPL DP+ +NPC+CPTCEGNRVQRCLNCLGKG++
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYE 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135502|ref|XP_003569348.1| PREDICTED: uncharacterized protein LOC100824079 [Brachypodium distachyon]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 83/103 (80%)

Query: 2   ILKQVGFLGATAAIIFGGFVTLNVASTITLGALRAASEAKRKKFAMPCGVCKGKGFYICK 61
           + +Q+  +G  AA + GGF+ L+ AST  + +LR  S+A ++KFAM CG C+GKG Y C+
Sbjct: 9   VRRQLQAVGRVAAYLGGGFLLLSAASTAAVRSLRYLSDANQRKFAMLCGACEGKGTYACR 68

Query: 62  LCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGF 104
           LC+G++T+EWSPLYDPVF+NPCLCPTC+G RVQRCLNCLGKG+
Sbjct: 69  LCRGSSTVEWSPLYDPVFVNPCLCPTCDGTRVQRCLNCLGKGY 111

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.580	0.448	0.306	0.00045

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/62 (30%), Positives = 28/62 (45%)

Query:    43 KKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGK 102
             K  ++ C  C+G+G   C  CKG   +     ++  F    LC  C G +   C +C G 
Sbjct:    66 KPNSLVCANCEGEGCVACSQCKGGG-VNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGA 124

Query:   103 GF 104
             GF
Sbjct:   125 GF 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.143   0.477    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.36    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  122 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.95u 0.10s 10.05t   Elapsed:  00:00:00
  Total cpu time:  9.95u 0.10s 10.05t   Elapsed:  00:00:00
  Start:  Fri May 10 12:25:10 2013   End:  Fri May 10 12:25:10 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III001153 hypothetical protein (105 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 44  KFAMPCGVCKGKG-----FYICKLCKGNATI-EWSPLYDPVFINPCLCPTC--EGNRVQ- 94
           K  +PC  C G G        C  C G+  + + S      F+N   CPTC  EG  V+ 
Sbjct: 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKD 220

Query: 95  RCLNCLGKG 103
           RC  C G+G
Sbjct: 221 RCPACYGEG 229

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.53
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.41
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.39
PRK14282	369	chaperone protein DnaJ; Provisional	99.06
PRK14298	377	chaperone protein DnaJ; Provisional	99.06
PRK14278	378	chaperone protein DnaJ; Provisional	99.04
PRK14276	380	chaperone protein DnaJ; Provisional	99.03
PRK14280	376	chaperone protein DnaJ; Provisional	99.02
PRK14296	372	chaperone protein DnaJ; Provisional	99.0
PRK14279	392	chaperone protein DnaJ; Provisional	99.0
PRK14286	372	chaperone protein DnaJ; Provisional	98.99
PRK14284	391	chaperone protein DnaJ; Provisional	98.98
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.98
PRK14281	397	chaperone protein DnaJ; Provisional	98.97
PRK14285	365	chaperone protein DnaJ; Provisional	98.97
PRK14301	373	chaperone protein DnaJ; Provisional	98.96
PRK14277	386	chaperone protein DnaJ; Provisional	98.95
PRK14295	389	chaperone protein DnaJ; Provisional	98.95
PRK10767	371	chaperone protein DnaJ; Provisional	98.95
PRK14288	369	chaperone protein DnaJ; Provisional	98.94
PRK14300	372	chaperone protein DnaJ; Provisional	98.94
PRK14297	380	chaperone protein DnaJ; Provisional	98.92
PRK14287	371	chaperone protein DnaJ; Provisional	98.91
PRK14289	386	chaperone protein DnaJ; Provisional	98.91
PRK14294	366	chaperone protein DnaJ; Provisional	98.9
PRK14293	374	chaperone protein DnaJ; Provisional	98.86
PRK14291	382	chaperone protein DnaJ; Provisional	98.85
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.84
PRK14290	365	chaperone protein DnaJ; Provisional	98.83
PRK14283	378	chaperone protein DnaJ; Provisional	98.81
PRK14292	371	chaperone protein DnaJ; Provisional	98.79
KOG2813	406	consensus Predicted molecular chaperone, contains	98.29
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.22
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.19
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.19
KOG2813	406	consensus Predicted molecular chaperone, contains	98.13
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.91
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.28
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	97.21
PRK14296	372	chaperone protein DnaJ; Provisional	97.2
PRK14284	391	chaperone protein DnaJ; Provisional	97.18
PRK14300	372	chaperone protein DnaJ; Provisional	97.18
PRK14298	377	chaperone protein DnaJ; Provisional	97.14
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	97.13
PRK14285	365	chaperone protein DnaJ; Provisional	97.12
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.09
PRK14279	392	chaperone protein DnaJ; Provisional	97.09
PRK14278	378	chaperone protein DnaJ; Provisional	97.09
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.08
PRK10767	371	chaperone protein DnaJ; Provisional	97.06
PRK14286	372	chaperone protein DnaJ; Provisional	97.04
PRK14301	373	chaperone protein DnaJ; Provisional	97.04
PRK14280	376	chaperone protein DnaJ; Provisional	97.03
PRK14282	369	chaperone protein DnaJ; Provisional	96.99
PRK14288	369	chaperone protein DnaJ; Provisional	96.97
PRK14290	365	chaperone protein DnaJ; Provisional	96.97
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.96
PRK14289	386	chaperone protein DnaJ; Provisional	96.95
PRK14295	389	chaperone protein DnaJ; Provisional	96.94
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.91
PRK14276	380	chaperone protein DnaJ; Provisional	96.89
PRK14294	366	chaperone protein DnaJ; Provisional	96.88
PRK14281	397	chaperone protein DnaJ; Provisional	96.87
PRK14297	380	chaperone protein DnaJ; Provisional	96.83
PRK14277	386	chaperone protein DnaJ; Provisional	96.81
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.73
PRK14287	371	chaperone protein DnaJ; Provisional	96.63
PRK14293	374	chaperone protein DnaJ; Provisional	96.62
PRK14291	382	chaperone protein DnaJ; Provisional	96.61
PRK14283	378	chaperone protein DnaJ; Provisional	96.45
PRK14292	371	chaperone protein DnaJ; Provisional	96.34
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	94.58
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	94.38
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	92.68
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	90.58
PRK00635	1809	excinuclease ABC subunit A; Provisional	89.87
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	89.33
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	88.74
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	88.71
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	85.07
TIGR00595	505	priA primosomal protein N'. All proteins in this f	83.67
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	82.82
PF14353	128	CpXC: CpXC protein	82.06
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	81.84
COG1198	730	PriA Primosomal protein N' (replication factor Y)	81.14

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.53  E-value=2.4e-15  Score=104.66  Aligned_cols=76  Identities=22%  Similarity=0.545  Sum_probs=62.1

Q ss_pred             HHHHHHHHH--HHHHHhcCCCcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccCccCCcccc
Q 034037           27 STITLGALR--AASEAKRKKFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCLGKGF  104 (105)
Q Consensus        27 s~~a~~~~~--~~~~~~~~~~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C~~C~G~G~  104 (105)
                      .++-++.|.  .+.++.++...+.|+.|+|+|..+|+.|+|+|.+.+..  .+.++.+++||.|+|+|+.+|+.|+|+|+
T Consensus        20 ~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~   97 (111)
T PLN03165         20 VGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--GGGEKEVSKCINCDGAGSLTCTTCQGSGI   97 (111)
T ss_pred             hccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--CCcEEEEEECCCCCCcceeeCCCCCCCEE
Confidence            344444544  45555678889999999999999999999999998754  23466889999999999999999999986

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.41  E-value=2.7e-13  Score=85.63  Aligned_cols=55  Identities=31%  Similarity=0.727  Sum_probs=44.0

Q ss_pred             CCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCcccccc----cCccCCccc
Q 034037           49 CGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRVQ----RCLNCLGKG  103 (105)
Q Consensus        49 C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~~----~C~~C~G~G  103 (105)
                      |+.|+|+|.      .+|+.|+|+|++... +..++.++.+++||.|+|+|++    +|++|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            889999994      689999999999885 3455678899999999999983    799999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2e-13  Score=111.01  Aligned_cols=60  Identities=30%  Similarity=0.671  Sum_probs=53.4

Q ss_pred             CCcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|      ..+|++|+|+|++...+.. +.|+.+++||+|+|+|+   .||++|+|.|+
T Consensus       140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~  208 (371)
T COG0484         140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR  208 (371)
T ss_pred             ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence            4578999999998      4799999999999887655 77889999999999999   49999999986

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=1.5e-10  Score=93.31  Aligned_cols=61  Identities=28%  Similarity=0.611  Sum_probs=51.3

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++... +...+.++.+++|+.|+|+|+   .+|+.|+|+|+
T Consensus       150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  220 (369)
T PRK14282        150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGR  220 (369)
T ss_pred             eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCcee
Confidence            35689999999993      689999999998775 344566778899999999998   49999999985

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=1.4e-10  Score=93.99  Aligned_cols=61  Identities=28%  Similarity=0.586  Sum_probs=51.3

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++.... ..++.++.+.+|+.|+|+|+   .+|+.|+|+|+
T Consensus       139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  209 (377)
T PRK14298        139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGK  209 (377)
T ss_pred             EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccE
Confidence            34689999999994      6899999999987753 33456778999999999998   59999999985

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.04  E-value=1.7e-10  Score=93.42  Aligned_cols=61  Identities=30%  Similarity=0.677  Sum_probs=51.0

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++.... ...+.++.+++|+.|+|+|+   .+|+.|+|.|+
T Consensus       137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  207 (378)
T PRK14278        137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGR  207 (378)
T ss_pred             EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCcee
Confidence            34689999999993      6899999999987753 34456677889999999998   59999999985

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.03  E-value=2.2e-10  Score=92.80  Aligned_cols=61  Identities=25%  Similarity=0.600  Sum_probs=51.1

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++.... ...+.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (380)
T PRK14276        144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGH  214 (380)
T ss_pred             eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceE
Confidence            35689999999993      6899999999987753 33456677889999999998   49999999986

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=2.8e-10  Score=92.05  Aligned_cols=60  Identities=28%  Similarity=0.648  Sum_probs=50.4

Q ss_pred             CcccCCCCcCcc------cccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKG------FYICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|      ..+|+.|+|+|++.... ...+.++.+.+|+.|+|+|+   .+|+.|+|+|+
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  211 (376)
T PRK14280        142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGK  211 (376)
T ss_pred             eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceE
Confidence            468999999999      36899999999987753 33456667889999999998   59999999985

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=2.7e-10  Score=92.20  Aligned_cols=60  Identities=30%  Similarity=0.659  Sum_probs=49.2

Q ss_pred             CcccCCCCcCccc------ccCCCCCcccEEEEccCCCC-ccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDP-VFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g-~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.      .+|+.|+|+|.+...+...+ .++.+++|+.|+|+|+   .+|+.|+|.|+
T Consensus       148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~  217 (372)
T PRK14296        148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGK  217 (372)
T ss_pred             eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceE
Confidence            4678999999994      68999999999887643322 3456789999999998   48999999985

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=3.2e-10  Score=92.28  Aligned_cols=58  Identities=29%  Similarity=0.725  Sum_probs=49.6

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++....   +.++.+++|+.|+|+|+   .+|+.|+|.|+
T Consensus       171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~  237 (392)
T PRK14279        171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGV  237 (392)
T ss_pred             eccccCCCCccccccCCCCCCCCCCCcceEEEEEEe---cceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence            45689999999993      6899999999987764   34567899999999998   59999999885

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.99  E-value=3.5e-10  Score=91.44  Aligned_cols=58  Identities=31%  Similarity=0.703  Sum_probs=49.9

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++....   +.++.+++|+.|+|+|+   .+|+.|+|.|+
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (372)
T PRK14286        148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGL  214 (372)
T ss_pred             eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence            35689999999994      6899999999987764   45678889999999998   59999999986

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.98  E-value=3.8e-10  Score=91.71  Aligned_cols=58  Identities=31%  Similarity=0.702  Sum_probs=49.8

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|.+....   +.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  222 (391)
T PRK14284        156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGR  222 (391)
T ss_pred             eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence            45689999999993      6899999999988654   45678889999999998   59999999885

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.98  E-value=5.8e-10  Score=89.12  Aligned_cols=61  Identities=30%  Similarity=0.613  Sum_probs=51.0

Q ss_pred             CCcccCCCCcCcc------cccCCCCCcccEEEEccC-CCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPL-YDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~-~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|      ..+|+.|+|+|.+..... ..+.++.+++|+.|.|+|+   .+|+.|+|+|+
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  211 (354)
T TIGR02349       141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR  211 (354)
T ss_pred             ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcE
Confidence            3568999999999      468999999999877543 3445667889999999998   49999999985

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.97  E-value=4.6e-10  Score=91.42  Aligned_cols=60  Identities=33%  Similarity=0.796  Sum_probs=50.5

Q ss_pred             CcccCCCCcCccc-----ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF-----YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.     .+|+.|+|+|+++.. +...+.++.+++|+.|.|+|+   .+|+.|+|.|+
T Consensus       162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  230 (397)
T PRK14281        162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGI  230 (397)
T ss_pred             eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCcc
Confidence            4678999999994     689999999998775 334456667889999999998   59999999986

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.97  E-value=4.9e-10  Score=90.40  Aligned_cols=57  Identities=35%  Similarity=0.731  Sum_probs=49.0

Q ss_pred             CcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|      ..+|+.|+|+|++...+   +.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  210 (365)
T PRK14285        145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG---GFFRVTTTCPKCYGNGKIISNPCKSCKGKGS  210 (365)
T ss_pred             ecccCCCCCCcccCCCCCCccCCCccCceeEEecC---ceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence            468999999999      36899999999988643   44578999999999998   59999999985

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=4.9e-10  Score=90.63  Aligned_cols=57  Identities=30%  Similarity=0.741  Sum_probs=49.3

Q ss_pred             CcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.      .+|+.|+|+|++....   +.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (373)
T PRK14301        143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGI  208 (373)
T ss_pred             ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCce
Confidence            4689999999993      6899999999987654   44677999999999998   59999999985

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=6.4e-10  Score=90.23  Aligned_cols=60  Identities=28%  Similarity=0.589  Sum_probs=50.1

Q ss_pred             CcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.      .+|+.|+|+|++.... ...+.++..++|+.|+|+|+   .+|+.|+|+|+
T Consensus       154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  223 (386)
T PRK14277        154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGR  223 (386)
T ss_pred             eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcE
Confidence            4689999999993      6899999999987753 33455667789999999998   49999999985

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=5.9e-10  Score=90.67  Aligned_cols=58  Identities=31%  Similarity=0.772  Sum_probs=49.7

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++....   +.|+.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  230 (389)
T PRK14295        164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---GGFSLSEPCPDCKGRGLIADDPCLVCKGSGR  230 (389)
T ss_pred             eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---cceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence            35688999999993      6899999999988764   35678889999999998   49999999885

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=7.2e-10  Score=89.27  Aligned_cols=58  Identities=29%  Similarity=0.739  Sum_probs=49.3

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      ..|+.|+|+|++...+   +.++.+.+|+.|+|+|+   .+|+.|+|+|+
T Consensus       140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  206 (371)
T PRK10767        140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR  206 (371)
T ss_pred             eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence            34689999999993      5899999999987654   44567889999999998   49999999985

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=6.9e-10  Score=89.66  Aligned_cols=57  Identities=26%  Similarity=0.668  Sum_probs=48.7

Q ss_pred             CcccCCCCcCccc-----ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.     .+|+.|+|+|++....   +.++.+++|+.|.|+|+   .+|+.|+|.|+
T Consensus       139 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  203 (369)
T PRK14288        139 YQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTY  203 (369)
T ss_pred             eeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe---ceEEEEEecCCCCCCceEccccCccCCCcce
Confidence            4569999999993     6899999999987764   44567889999999998   59999999885

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=7.2e-10  Score=89.57  Aligned_cols=57  Identities=28%  Similarity=0.686  Sum_probs=49.0

Q ss_pred             CcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|      ..+|+.|+|+|.+....   +.++.+.+|+.|.|+|+   .+|+.|+|.|+
T Consensus       144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  209 (372)
T PRK14300        144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGR  209 (372)
T ss_pred             eccccCCCCCcccCCCCCCccCCCccCeEEEEEee---ceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence            468999999999      36899999999987653   44667889999999998   59999999986

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.92  E-value=1e-09  Score=88.80  Aligned_cols=61  Identities=28%  Similarity=0.605  Sum_probs=50.8

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      .+|+.|+|+|++... +...+.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  216 (380)
T PRK14297        146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGK  216 (380)
T ss_pred             eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeE
Confidence            34688999999994      689999999998764 333456778999999999998   49999999885

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.91  E-value=1.1e-09  Score=88.53  Aligned_cols=60  Identities=32%  Similarity=0.665  Sum_probs=49.9

Q ss_pred             CcccCCCCcCcc------cccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKG------FYICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|      ..+|+.|+|+|++.... ...+.++.+.+|+.|.|+|+   .+|+.|+|.|+
T Consensus       137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  206 (371)
T PRK14287        137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGK  206 (371)
T ss_pred             eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeE
Confidence            467899999999      36899999999987753 33456667889999999998   49999999875

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.91  E-value=1.1e-09  Score=88.69  Aligned_cols=61  Identities=31%  Similarity=0.751  Sum_probs=51.3

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      ..|+.|+|+|.+.... ...+.++.+.+|+.|+|+|+   .+|+.|+|.|+
T Consensus       152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  222 (386)
T PRK14289        152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGI  222 (386)
T ss_pred             EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcE
Confidence            45689999999993      6899999999988753 33456667899999999998   49999999985

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=1.2e-09  Score=88.06  Aligned_cols=57  Identities=30%  Similarity=0.676  Sum_probs=48.8

Q ss_pred             CcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.      .+|+.|+|+|.+....   +.++.+++|+.|+|+|+   .+|+.|+|.|+
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (366)
T PRK14294        143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR  208 (366)
T ss_pred             ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence            4689999999994      5899999999987643   44668899999999998   49999999885

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.86  E-value=2.4e-09  Score=86.48  Aligned_cols=61  Identities=28%  Similarity=0.651  Sum_probs=50.3

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.++|+.|+|+|.      .+|+.|+|+|++.... ...+.++.+.+|+.|.|+|+   .+|+.|+|.|+
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  211 (374)
T PRK14293        141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGV  211 (374)
T ss_pred             eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcc
Confidence            35689999999994      5799999999987653 33355667789999999998   49999999986

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.85  E-value=2.2e-09  Score=87.00  Aligned_cols=58  Identities=34%  Similarity=0.782  Sum_probs=49.6

Q ss_pred             CCcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCccccc--ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|      ..+|+.|+|+|++....   +.++.+.+|+.|+|+|.  .+|+.|+|.|+
T Consensus       154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~  219 (382)
T PRK14291        154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGL  219 (382)
T ss_pred             eeeccCCCCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCce
Confidence            3568999999999      46899999999987763   44668899999999997  59999999885

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.84  E-value=2.6e-09  Score=88.01  Aligned_cols=61  Identities=30%  Similarity=0.668  Sum_probs=48.5

Q ss_pred             CCcccCCCCcCccc-----ccCCCCCcccEEEEccCCCC-ccccceeCCCCccccc-----ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDP-VFINPCLCPTCEGNRV-----QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g-~~~~~~~Cp~C~G~G~-----~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.     .+|+.|+|+|++.......+ .++.+.+|+.|+|+|+     .+|+.|+|.|+
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~  219 (421)
T PTZ00037        148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGV  219 (421)
T ss_pred             eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcce
Confidence            34689999999994     68999999998655433322 2357889999999998     37999999985

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=3.2e-09  Score=85.57  Aligned_cols=59  Identities=25%  Similarity=0.586  Sum_probs=48.3

Q ss_pred             CcccCCCCcCccc-----ccCCCCCcccEEEEccCCCCc--cccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDPV--FINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g~--~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|.     ..|+.|+|+|++..... .+.  ++.+++|+.|.|+|+   .+|+.|+|+|+
T Consensus       148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~-~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  216 (365)
T PRK14290        148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG-QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGT  216 (365)
T ss_pred             ecccCCCCccccCCCCCCccCCCCCCcCEEEEEec-cCeEEEEEEEeCCCCCCceeEccCCCCCCCCcee
Confidence            4688999999994     68999999999877543 232  345789999999997   59999999986

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.81  E-value=4e-09  Score=85.36  Aligned_cols=61  Identities=30%  Similarity=0.694  Sum_probs=50.2

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEcc-CCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSP-LYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~-~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|.      ..|+.|+|+|++.... ...+.++.+.+|+.|.|+|+   .+|..|+|+|+
T Consensus       144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (378)
T PRK14283        144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGV  214 (378)
T ss_pred             eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCcee
Confidence            34689999999983      6799999999987653 33455667789999999998   49999999985

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.79  E-value=5.1e-09  Score=84.38  Aligned_cols=60  Identities=27%  Similarity=0.574  Sum_probs=49.9

Q ss_pred             CcccCCCCcCccc-------ccCCCCCcccEEEEc-cCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           45 FAMPCGVCKGKGF-------YICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG~-------~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +...|+.|+|+|.       .+|+.|+|+|.+... +...+.++.+.+|+.|+|+|+   .+|+.|+|+|+
T Consensus       138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (371)
T PRK14292        138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR  208 (371)
T ss_pred             eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence            4688999999993       579999999998764 333455667889999999998   59999999985

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.2e-07  Score=74.40  Aligned_cols=59  Identities=25%  Similarity=0.577  Sum_probs=37.9

Q ss_pred             CcccCCCCcCcccccCCCCCcccE--------EEEccCC------CCc--------cccceeCCCCcccccccCccCCcc
Q 034037           45 FAMPCGVCKGKGFYICKLCKGNAT--------IEWSPLY------DPV--------FINPCLCPTCEGNRVQRCLNCLGK  102 (105)
Q Consensus        45 ~~~~C~~C~GsG~~~C~~C~G~G~--------i~~~~~~------~g~--------~~~~~~Cp~C~G~G~~~C~~C~G~  102 (105)
                      ..+.|..|.|.|...|+.|+|.|.        +.+..-.      .+.        .....+|++|+|+|+++|.+|.|+
T Consensus       186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gt  265 (406)
T KOG2813|consen  186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGT  265 (406)
T ss_pred             hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCc
Confidence            346789999999999999999984        2221000      010        113456777777777777777776


Q ss_pred             c
Q 034037          103 G  103 (105)
Q Consensus       103 G  103 (105)
                      |
T Consensus       266 g  266 (406)
T KOG2813|consen  266 G  266 (406)
T ss_pred             c
Confidence            6

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.22  E-value=6.7e-07  Score=77.02  Aligned_cols=58  Identities=29%  Similarity=0.580  Sum_probs=45.3

Q ss_pred             ccCCCCcCccc-----ccCCCCCcccEEEEcc----------CCCCccccceeCCCCccccc----ccCccCCcccc
Q 034037           47 MPCGVCKGKGF-----YICKLCKGNATIEWSP----------LYDPVFINPCLCPTCEGNRV----QRCLNCLGKGF  104 (105)
Q Consensus        47 ~~C~~C~GsG~-----~~C~~C~G~G~i~~~~----------~~~g~~~~~~~Cp~C~G~G~----~~C~~C~G~G~  104 (105)
                      ..|+.|+|+|.     ..|+.|+|+|.+...+          ..+..+....+||.|+|.|+    .+|+.|.|+|.
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gk   79 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGK   79 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCcee
Confidence            57999999994     5799999999984421          11222335679999999998    49999999986

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.6e-06  Score=70.27  Aligned_cols=61  Identities=25%  Similarity=0.605  Sum_probs=50.1

Q ss_pred             CCcccCCCCcCccc-----ccCCCCCcccEEEEccCCCC-c-cccceeCCCCcccccc-----cCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF-----YICKLCKGNATIEWSPLYDP-V-FINPCLCPTCEGNRVQ-----RCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~-----~~C~~C~G~G~i~~~~~~~g-~-~~~~~~Cp~C~G~G~~-----~C~~C~G~G~  104 (105)
                      .+...|+.|+|+|.     ..|+.|.|+|.........+ . .+.+..|+.|+|+|..     +|+.|+|+++
T Consensus       125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~  197 (337)
T KOG0712|consen  125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKV  197 (337)
T ss_pred             ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchh
Confidence            35789999999993     57999999999877655444 2 3478899999999985     9999999875

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.19  E-value=1.4e-06  Score=54.88  Aligned_cols=40  Identities=33%  Similarity=0.682  Sum_probs=28.9

Q ss_pred             CCCcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCcccc
Q 034037           43 KKFAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNR   92 (105)
Q Consensus        43 ~~~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G   92 (105)
                      ......|+.|+|+|.               .+|+.|+|+|++. .         ..+|+.|+|+|
T Consensus        12 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~---------~~~C~~C~G~g   66 (66)
T PF00684_consen   12 GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E---------KDPCKTCKGSG   66 (66)
T ss_dssp             TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T---------SSB-SSSTTSS
T ss_pred             CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C---------CCCCCCCCCcC
Confidence            346789999999992               5899999999884 1         45899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.7e-06  Score=70.34  Aligned_cols=47  Identities=23%  Similarity=0.584  Sum_probs=29.1

Q ss_pred             ccCCCCCcccEEEEccCC-CC-------ccc--------------cceeCCCCcccccccCccCCcccc
Q 034037           58 YICKLCKGNATIEWSPLY-DP-------VFI--------------NPCLCPTCEGNRVQRCLNCLGKGF  104 (105)
Q Consensus        58 ~~C~~C~G~G~i~~~~~~-~g-------~~~--------------~~~~Cp~C~G~G~~~C~~C~G~G~  104 (105)
                      ..|..|.|+|.+.+..-. .|       .+.              ....|..|+|+|+.+|++|+|.|.
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~  256 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGK  256 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCC
Confidence            468888888877764111 11       111              234577777778888888888774

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=7.3e-06  Score=67.19  Aligned_cols=38  Identities=29%  Similarity=0.676  Sum_probs=33.4

Q ss_pred             CcccCCCCcCccc-------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF-------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~-------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ..+.|++|+|+|.             .+|++|+|+|++.           ..+|++|+|.|.
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~  208 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGR  208 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCe
Confidence            6889999999992             5899999999873           459999999997

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.28  E-value=0.00016  Score=62.65  Aligned_cols=45  Identities=36%  Similarity=0.810  Sum_probs=31.8

Q ss_pred             CcccCCCCcCccc------------------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc-ccCccC
Q 034037           45 FAMPCGVCKGKGF------------------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV-QRCLNC   99 (105)
Q Consensus        45 ~~~~C~~C~GsG~------------------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~-~~C~~C   99 (105)
                      ..+.|+.|+|+|.                        ..|+.|+|+|.++.          ..+||.|.|+|+ ..|..|
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v----------~~~c~~c~G~gkv~~c~~c   86 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV----------YDTCPECGGTGKVLTCDIC   86 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE----------EeecccCCCceeEEeeccc
Confidence            4567888888881                        37888888887754          347888888887 344444

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.00038  Score=55.29  Aligned_cols=53  Identities=25%  Similarity=0.491  Sum_probs=44.0

Q ss_pred             CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccCccCC
Q 034037           45 FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRCLNCL  100 (105)
Q Consensus        45 ~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C~~C~  100 (105)
                      ....|+.|.|.+.+.|..|+|+=.+..+   ........+|+.|+=.|.++|+.|.
T Consensus       228 ~~~~C~~CGg~rFlpC~~C~GS~kv~~~---~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  228 GGGVCESCGGARFLPCSNCHGSCKVHEE---EEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCCcCCCcCCcceEecCCCCCceeeeee---ccCCCcEEECcccCCCCceeCCccC
Confidence            3478999999999999999999988763   1112356899999999999999995

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.20  E-value=0.00025  Score=57.64  Aligned_cols=38  Identities=29%  Similarity=0.672  Sum_probs=31.7

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  217 (372)
T PRK14296        165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----------KNKCKNCKGKGK  217 (372)
T ss_pred             CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------cccccCCCCceE
Confidence            4578999999993               3799999999873           347999999985

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.18  E-value=0.00024  Score=57.98  Aligned_cols=38  Identities=29%  Similarity=0.638  Sum_probs=27.4

Q ss_pred             CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.           .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  222 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGR  222 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCcce
Confidence            3567888888884           4788888888652           236888888775

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.18  E-value=0.00027  Score=57.30  Aligned_cols=38  Identities=32%  Similarity=0.721  Sum_probs=27.9

Q ss_pred             CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  209 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGR  209 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceE
Confidence            3567888888883           3688888888763           236888888876

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.14  E-value=0.00029  Score=57.32  Aligned_cols=38  Identities=29%  Similarity=0.758  Sum_probs=31.4

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|+|.
T Consensus       157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  209 (377)
T PRK14298        157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGK  209 (377)
T ss_pred             CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccE
Confidence            3578999999993               4799999999763           347999999986

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=97.13  E-value=0.001  Score=48.06  Aligned_cols=51  Identities=25%  Similarity=0.478  Sum_probs=39.4

Q ss_pred             CCcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCcccccccC
Q 034037           44 KFAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQRC   96 (105)
Q Consensus        44 ~~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~~C   96 (105)
                      .....|..|.|.+.+.|+.|+|+=.+......  .......||.|+=.|.++|
T Consensus        97 ~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~--~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          97 AGGGVCEGCGGARFVPCSECNGSCKVFAENAT--AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             cCCCCCCCCCCcCeEECCCCCCcceEEeccCc--ccccEEECCCCCccccccC
Confidence            34567999999999999999999988765311  1124578999998888776

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.12  E-value=0.00032  Score=56.80  Aligned_cols=37  Identities=32%  Similarity=0.784  Sum_probs=25.6

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|.+.           ..+|+.|.|+|.
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  210 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGS  210 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCE
Confidence            467888888773           3688888887652           236888888774

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.09  E-value=0.00041  Score=48.36  Aligned_cols=33  Identities=33%  Similarity=0.897  Sum_probs=24.8

Q ss_pred             ccCCCCcCccc------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           47 MPCGVCKGKGF------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        47 ~~C~~C~GsG~------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ..|+.|+|+|.            .+|+.|+|+|++              .|+.|.|+|.
T Consensus        53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~--------------~C~~C~G~G~   97 (111)
T PLN03165         53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL--------------TCTTCQGSGI   97 (111)
T ss_pred             cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee--------------eCCCCCCCEE
Confidence            47888888872            368888888852              4888888876

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.09  E-value=0.00036  Score=57.08  Aligned_cols=38  Identities=32%  Similarity=0.736  Sum_probs=26.0

Q ss_pred             CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|.|.|.
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~  237 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGV  237 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeE
Confidence            3567888888773           3688888888652           236788877764

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.09  E-value=0.00038  Score=56.64  Aligned_cols=38  Identities=29%  Similarity=0.763  Sum_probs=31.5

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|+|.
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  207 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGR  207 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCcee
Confidence            3578999999993               4799999999873           237999999986

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.08  E-value=0.0016  Score=48.99  Aligned_cols=27  Identities=26%  Similarity=0.736  Sum_probs=22.3

Q ss_pred             cccCCCCcCccc-----ccCCCCCcccEEEEc
Q 034037           46 AMPCGVCKGKGF-----YICKLCKGNATIEWS   72 (105)
Q Consensus        46 ~~~C~~C~GsG~-----~~C~~C~G~G~i~~~   72 (105)
                      ...|+.|+|+|.     ..|+.|+|+|+++..
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            678999999994     359999999998764

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.06  E-value=0.00044  Score=55.87  Aligned_cols=37  Identities=30%  Similarity=0.731  Sum_probs=26.8

Q ss_pred             cccCCCCcCcccc-----------cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGFY-----------ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~~-----------~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.+           +|+.|+|+|.+.           ..+|+.|.|+|.
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  206 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGR  206 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCce
Confidence            4578888888843           588888888752           236888888875

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.04  E-value=0.00045  Score=56.10  Aligned_cols=37  Identities=32%  Similarity=0.797  Sum_probs=26.8

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  214 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGL  214 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcE
Confidence            467888888883           3688888888763           236888888875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.04  E-value=0.00041  Score=56.32  Aligned_cols=37  Identities=30%  Similarity=0.877  Sum_probs=27.3

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  208 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGI  208 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCce
Confidence            467888888883           4688888888762           236888888875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.00043  Score=56.22  Aligned_cols=38  Identities=32%  Similarity=0.698  Sum_probs=31.5

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|+|.
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  211 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGK  211 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceE
Confidence            4678999999983               3799999999863           347999999986

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.99  E-value=0.00055  Score=55.40  Aligned_cols=38  Identities=29%  Similarity=0.661  Sum_probs=31.4

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++.           ..+|+.|.|.|.
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  220 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGR  220 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCcee
Confidence            3578999999993               3799999999862           347999999985

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.97  E-value=0.00065  Score=55.12  Aligned_cols=37  Identities=30%  Similarity=0.781  Sum_probs=23.4

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  203 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTY  203 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcce
Confidence            456777777773           3577777777652           235777777664

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.97  E-value=0.00057  Score=55.26  Aligned_cols=38  Identities=32%  Similarity=0.825  Sum_probs=31.9

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|.|++.           ..+|+.|+|+|.
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  216 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----------EEKCPRCNGTGT  216 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----------cCCCCCCCCcee
Confidence            4678999999993               4799999999872           348999999986

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.96  E-value=0.00067  Score=56.23  Aligned_cols=40  Identities=30%  Similarity=0.750  Sum_probs=32.6

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++..         ...+|+.|+|+|.
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~---------~~~~C~~C~G~g~  219 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP---------ESKKCKNCSGKGV  219 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc---------ccccCCcCCCcce
Confidence            4678999999993               37999999998743         2348999999986

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.95  E-value=0.00052  Score=55.78  Aligned_cols=38  Identities=32%  Similarity=0.734  Sum_probs=31.6

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               ..|+.|+|+|++.           ...|+.|.|+|.
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  222 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----------KKKCKKCGGEGI  222 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----------CcCCCCCCCCcE
Confidence            4688999999994               3699999999763           347999999986

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.94  E-value=0.00059  Score=55.74  Aligned_cols=37  Identities=32%  Similarity=0.681  Sum_probs=27.3

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  230 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGR  230 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCce
Confidence            567888888873           4788888888763           236888888775

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.91  E-value=0.00072  Score=54.18  Aligned_cols=37  Identities=32%  Similarity=0.745  Sum_probs=31.2

Q ss_pred             cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.               .+|+.|+|+|++.           ...|+.|.|+|.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  211 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGR  211 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcE
Confidence            678999999983               4799999999863           237999999986

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.89  E-value=0.00057  Score=55.56  Aligned_cols=38  Identities=32%  Similarity=0.802  Sum_probs=31.3

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  214 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGH  214 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceE
Confidence            3578999999983               3799999999763           347999999986

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.88  E-value=0.00075  Score=54.57  Aligned_cols=37  Identities=30%  Similarity=0.727  Sum_probs=28.0

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|.|.|.
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  208 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGR  208 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceE
Confidence            567888888883           4688888888762           236888888875

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.87  E-value=0.00083  Score=54.98  Aligned_cols=38  Identities=29%  Similarity=0.756  Sum_probs=31.6

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++.           ..+|+.|.|.|.
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  230 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGI  230 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCcc
Confidence            4678999999993               3699999999873           237999999986

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00074  Score=54.86  Aligned_cols=37  Identities=27%  Similarity=0.699  Sum_probs=30.8

Q ss_pred             cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  216 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGK  216 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeE
Confidence            578999999983               3799999999863           247999999984

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.00089  Score=54.55  Aligned_cols=38  Identities=32%  Similarity=0.735  Sum_probs=31.5

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  223 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGR  223 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcE
Confidence            3678999999983               3799999999873           237999999986

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.73  E-value=0.00071  Score=50.91  Aligned_cols=27  Identities=30%  Similarity=0.669  Sum_probs=15.9

Q ss_pred             ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .+|+.|+|+|.+...         ..+|+.|+|+|+
T Consensus       100 ~~C~~C~G~G~~i~~---------~~~C~~C~G~G~  126 (186)
T TIGR02642       100 CKCPRCRGTGLIQRR---------QRECDTCAGTGR  126 (186)
T ss_pred             CcCCCCCCeeEEecC---------CCCCCCCCCccE
Confidence            467777777665331         136666666665

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.63  E-value=0.0012  Score=53.68  Aligned_cols=38  Identities=32%  Similarity=0.736  Sum_probs=31.3

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|+.|.|.|.
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  206 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGK  206 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeE
Confidence            4678999999993               4799999999863           347999999885

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.62  E-value=0.0016  Score=52.78  Aligned_cols=38  Identities=29%  Similarity=0.686  Sum_probs=31.3

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|++.           ..+|+.|.|+|.
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  211 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGV  211 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCcc
Confidence            3578999999994               3699999999863           237999999986

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.61  E-value=0.0016  Score=53.07  Aligned_cols=37  Identities=27%  Similarity=0.682  Sum_probs=28.1

Q ss_pred             CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.           .+|+.|+|+|.+            ...|+.|+|.|.
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~  219 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGL  219 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCce
Confidence            3578999999883           479999999853            136899998875

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0024  Score=51.88  Aligned_cols=38  Identities=32%  Similarity=0.719  Sum_probs=31.3

Q ss_pred             CcccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           45 FAMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        45 ~~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ....|+.|+|+|.               .+|+.|+|+|.+.           ..+|..|.|+|.
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  214 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGV  214 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCcee
Confidence            4678999999984               3699999999763           347999999986

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.34  E-value=0.0028  Score=51.28  Aligned_cols=37  Identities=30%  Similarity=0.760  Sum_probs=31.0

Q ss_pred             cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.               .+|+.|+|.|++.           ..+|+.|.|+|.
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~  208 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGR  208 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceE
Confidence            678999999994               3699999999762           358999999985

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.016  Score=45.86  Aligned_cols=56  Identities=30%  Similarity=0.615  Sum_probs=42.3

Q ss_pred             cccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc---cCccCCcccc
Q 034037           46 AMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ---RCLNCLGKGF  104 (105)
Q Consensus        46 ~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~---~C~~C~G~G~  104 (105)
                      ...|..|.|.|.      ..|+.|.|+|.+......  .+... +|..|.++|..   .|..|.|.|.
T Consensus       164 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~  228 (288)
T KOG0715|consen  164 LSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKED--PFILY-TCSYCLGRGLVLRDNCQACSGAGQ  228 (288)
T ss_pred             ecccccccCcCcccccccccchhhhCcccccccccC--Cccee-ecccccccceeccchHHHhhcchh
Confidence            578999999993      689999999976553211  12222 89999999983   5999999873

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.03  Score=45.66  Aligned_cols=44  Identities=30%  Similarity=0.696  Sum_probs=34.3

Q ss_pred             hcCCCcccCCCCcCccc----------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           41 KRKKFAMPCGVCKGKGF----------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        41 ~~~~~~~~C~~C~GsG~----------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .++.....|+.|.|+|.                .+|..|+|+|...         .....|+.|.|++.
T Consensus       138 gksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~---------~~kd~C~~C~G~~~  197 (337)
T KOG0712|consen  138 GKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI---------SLKDRCKTCSGAKV  197 (337)
T ss_pred             CCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc---------cccccCcccccchh
Confidence            34556678999999992                5899999999751         23458999999986

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=92.68  E-value=0.09  Score=47.71  Aligned_cols=33  Identities=27%  Similarity=0.643  Sum_probs=24.4

Q ss_pred             cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .|+.|+|.|.++....+.+.  ...+||.|+|+..
T Consensus       738 ~C~~C~G~G~~~~~~~f~~~--~~~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIEMHFLPD--VYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEEccCCCC--cccCCCCcCCcee
Confidence            59999999999876444332  4678999988865

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=90.58  E-value=0.21  Score=45.56  Aligned_cols=33  Identities=27%  Similarity=0.641  Sum_probs=23.6

Q ss_pred             cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .|+.|+|.|.++....+.+.  ...+||.|+|+..
T Consensus       740 ~C~~C~G~G~~~~~~~f~~~--~~~~C~~C~G~R~  772 (943)
T PRK00349        740 RCEACQGDGVIKIEMHFLPD--VYVPCDVCKGKRY  772 (943)
T ss_pred             CCCcccccceEEEEeccCCC--ccccCccccCccc
Confidence            59999999988876443332  4568888888764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=89.87  E-value=0.24  Score=47.97  Aligned_cols=33  Identities=27%  Similarity=0.517  Sum_probs=24.6

Q ss_pred             cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .|+.|+|.|.++....+.+.  ...+|+.|+|+..
T Consensus      1609 rC~~C~G~G~i~i~m~fl~d--v~~~C~~C~G~R~ 1641 (1809)
T PRK00635       1609 QCSDCWGLGYQWIDRAFYAL--EKRPCPTCSGFRI 1641 (1809)
T ss_pred             CCCCCccCceEEEecccCCC--cccCCCCCCCcCC
Confidence            59999999998876443322  5678999999865

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=89.33  E-value=0.44  Score=35.79  Aligned_cols=47  Identities=34%  Similarity=0.911  Sum_probs=34.6

Q ss_pred             ccCCCCcCcccccCCCCCcccEEEEccCCCCccc-cceeCCCCccccc------ccCccCC
Q 034037           47 MPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFI-NPCLCPTCEGNRV------QRCLNCL  100 (105)
Q Consensus        47 ~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~-~~~~Cp~C~G~G~------~~C~~C~  100 (105)
                      ..|+.|.++|. .|..|+....|      +|... ....|+.|+.-=.      .+||+|.
T Consensus       143 ~~C~lC~~kGf-iCe~C~~~~~I------fPF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~  196 (202)
T PF13901_consen  143 YSCELCQQKGF-ICEICNSDDII------FPFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA  196 (202)
T ss_pred             HHhHHHHhCCC-CCccCCCCCCC------CCCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence            38999999986 89999877543      34333 6788999987532      5788885

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=88.74  E-value=0.2  Score=39.19  Aligned_cols=27  Identities=22%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             cccCCCCcCcccccCCCCCcccEEEEc
Q 034037           46 AMPCGVCKGKGFYICKLCKGNATIEWS   72 (105)
Q Consensus        46 ~~~C~~C~GsG~~~C~~C~G~G~i~~~   72 (105)
                      ..++..-.|.+..+||+|+|+|+|.++
T Consensus        27 ~~py~e~~g~~~vtCPTCqGtGrIP~e   53 (238)
T PF07092_consen   27 SFPYVEFTGRDSVTCPTCQGTGRIPRE   53 (238)
T ss_pred             cCccccccCCCCCcCCCCcCCccCCcc
Confidence            567777888889999999999999664

The function of this family is unknown.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=88.71  E-value=0.37  Score=43.81  Aligned_cols=33  Identities=27%  Similarity=0.635  Sum_probs=25.5

Q ss_pred             cCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           59 ICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        59 ~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      +|..|+|.|.++.+-.+.|.  ...+|+.|+|+..
T Consensus       732 RCe~C~GdG~ikIeM~FLpd--Vyv~CevC~GkRY  764 (935)
T COG0178         732 RCEACQGDGVIKIEMHFLPD--VYVPCEVCHGKRY  764 (935)
T ss_pred             CCccccCCceEEEEeccCCC--ceeeCCCcCCccc
Confidence            79999999999887554443  5678999999754

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=85.07  E-value=0.48  Score=34.17  Aligned_cols=35  Identities=31%  Similarity=0.777  Sum_probs=27.9

Q ss_pred             ccccCCCCCcccEEEEccCCCCccccceeCCCCccccc------------ccCccCCcccc
Q 034037           56 GFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV------------QRCLNCLGKGF  104 (105)
Q Consensus        56 G~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~------------~~C~~C~G~G~  104 (105)
                      +...|..|.|.+.+              +|+.|+|+-+            .+|+.|+=+|.
T Consensus        98 ~~~~C~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl  144 (147)
T cd03031          98 GGGVCEGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGL  144 (147)
T ss_pred             CCCCCCCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence            34569999998876              8999999854            38999997774

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR00595 priA primosomal protein N'

Probab=83.67  E-value=1.9  Score=36.43  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHhc--------CC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc--c
Q 034037           27 STITLGALRAASEAKR--------KK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--Q   94 (105)
Q Consensus        27 s~~a~~~~~~~~~~~~--------~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--~   94 (105)
                      |-.++.+++..++.++        +.  ....|..|.-  ...|+.|++.=.....       .....|+.|+-+-.  .
T Consensus       184 s~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~--~~~C~~C~~~l~~h~~-------~~~l~Ch~Cg~~~~~~~  254 (505)
T TIGR00595       184 SPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGY--ILCCPNCDVSLTYHKK-------EGKLRCHYCGYQEPIPK  254 (505)
T ss_pred             cHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcC--ccCCCCCCCceEEecC-------CCeEEcCCCcCcCCCCC
Confidence            3445555555555432        11  1357888832  4789999875433322       13557888887765  4


Q ss_pred             cCccCCcc
Q 034037           95 RCLNCLGK  102 (105)
Q Consensus        95 ~C~~C~G~  102 (105)
                      .||+|.+.
T Consensus       255 ~Cp~C~s~  262 (505)
T TIGR00595       255 TCPQCGSE  262 (505)
T ss_pred             CCCCCCCC
Confidence            78888764

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=82.82  E-value=0.72  Score=42.03  Aligned_cols=22  Identities=36%  Similarity=0.896  Sum_probs=19.1

Q ss_pred             eeCCCCccccc------------ccCccCCcccc
Q 034037           83 CLCPTCEGNRV------------QRCLNCLGKGF  104 (105)
Q Consensus        83 ~~Cp~C~G~G~------------~~C~~C~G~G~  104 (105)
                      -.||.|+|.|.            .+|+.|+|+.|
T Consensus       737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~  770 (924)
T TIGR00630       737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence            46999999997            39999999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14353 CpXC: CpXC protein

Probab=82.06  E-value=1.2  Score=30.58  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             ccCCCCCcccEEEEccCCC----Cc--------cccceeCCCCccccc
Q 034037           58 YICKLCKGNATIEWSPLYD----PV--------FINPCLCPTCEGNRV   93 (105)
Q Consensus        58 ~~C~~C~G~G~i~~~~~~~----g~--------~~~~~~Cp~C~G~G~   93 (105)
                      ++||.|+-...+......+    +.        -....+||.|+....
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~   49 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR   49 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence            5799999988876532211    11        115789999998765

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=81.84  E-value=2.3  Score=25.31  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      +.||.|+|..+..+....+........|+.|+.++.
T Consensus         2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~   37 (53)
T TIGR03655         2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGP   37 (53)
T ss_pred             CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcc
Confidence            468889888873221111111112337888887764

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=81.14  E-value=3.5  Score=36.90  Aligned_cols=68  Identities=24%  Similarity=0.389  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHH--------hcCC--CcccCCCCcCcccccCCCCCcccEEEEccCCCCccccceeCCCCccccc--
Q 034037           26 ASTITLGALRAASEA--------KRKK--FAMPCGVCKGKGFYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV--   93 (105)
Q Consensus        26 ~s~~a~~~~~~~~~~--------~~~~--~~~~C~~C~GsG~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~--   93 (105)
                      +|-..+.+++..+++        |++-  ....|..|.-  ...|++|...=.....       .....|+.|+-...  
T Consensus       405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~--v~~Cp~Cd~~lt~H~~-------~~~L~CH~Cg~~~~~p  475 (730)
T COG1198         405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGY--IAECPNCDSPLTLHKA-------TGQLRCHYCGYQEPIP  475 (730)
T ss_pred             CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCC--cccCCCCCcceEEecC-------CCeeEeCCCCCCCCCC
Confidence            455667777766666        3333  2578999922  3689999976433222       25668999988855  


Q ss_pred             ccCccCCcc
Q 034037           94 QRCLNCLGK  102 (105)
Q Consensus        94 ~~C~~C~G~  102 (105)
                      ..||+|.+.
T Consensus       476 ~~Cp~Cgs~  484 (730)
T COG1198         476 QSCPECGSE  484 (730)
T ss_pred             CCCCCCCCC
Confidence            589999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.42
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.4
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.12
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.17
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.09
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.72
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.47
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.31
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.27
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.17
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	85.88

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=91.57  Aligned_cols=58  Identities=28%  Similarity=0.657  Sum_probs=50.3

Q ss_pred             CCcccCCCCcCcc------cccCCCCCcccEEEEccCCCCccccceeCCCCcccccc---cCccCCcccc
Q 034037           44 KFAMPCGVCKGKG------FYICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ---RCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG------~~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~---~C~~C~G~G~  104 (105)
                      .+.+.|+.|+|+|      ..+|+.|+|+|++...+   +.|+.+++||.|+|+|+.   +|+.|+|+|+
T Consensus        26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~---G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~   92 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT---GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQ   92 (104)
T ss_dssp             SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE---TTEEEEEECSSSSSSSEECSSCCSSSSSCSE
T ss_pred             eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe---CCEEEEEECCcCCCcceECCCcCCCCCCeeE
Confidence            4578999999999      37899999999987764   447788999999999994   9999999986

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.40  E-value=1.7e-13  Score=87.07  Aligned_cols=59  Identities=29%  Similarity=0.700  Sum_probs=50.5

Q ss_pred             CCCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc---cCccCCcccc
Q 034037           43 KKFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ---RCLNCLGKGF  104 (105)
Q Consensus        43 ~~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~---~C~~C~G~G~  104 (105)
                      -.+.+.|+.|+|+|.      .+|+.|+|+|++...+   +.|+.+.+||.|+|+|++   +|+.|+|.|+
T Consensus         8 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~   75 (79)
T 1exk_A            8 IPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGR   75 (79)
T ss_dssp             CCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEEEEEECTTTTTSSEECSSBCGGGTTSSE
T ss_pred             cccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc---CCCEEeeECcCCCCccEECCCcCCCCCCeEE
Confidence            346789999999994      6899999999987644   456778899999999995   9999999986

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.12  E-value=2.2e-11  Score=92.43  Aligned_cols=60  Identities=27%  Similarity=0.588  Sum_probs=48.8

Q ss_pred             CcccCCCCcCcc-----cccCCCCCcccEEEEccCCCCc-cccceeCCCCccccc-----ccCccCCcccc
Q 034037           45 FAMPCGVCKGKG-----FYICKLCKGNATIEWSPLYDPV-FINPCLCPTCEGNRV-----QRCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG-----~~~C~~C~G~G~i~~~~~~~g~-~~~~~~Cp~C~G~G~-----~~C~~C~G~G~  104 (105)
                      +.+.|+.|+|+|     ..+|+.|+|+|++...+...+. ++.+.+||.|+|+|+     .+|++|+|+|+
T Consensus        37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~  107 (248)
T 1nlt_A           37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKV  107 (248)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCE
T ss_pred             EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCce
Confidence            467999999999     4789999999998765433232 347889999999994     68999999985

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.17  E-value=7.5e-07  Score=55.96  Aligned_cols=38  Identities=29%  Similarity=0.716  Sum_probs=27.3

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ   94 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~   94 (105)
                      ...|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|+|.|..
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~G~~   76 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRV   76 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-----------CCcCCCCCCeEEE
Confidence            467888888883           2688888888752           2378888888763

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=2.2e-06  Score=56.83  Aligned_cols=38  Identities=29%  Similarity=0.726  Sum_probs=30.9

Q ss_pred             cccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc
Q 034037           46 AMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ   94 (105)
Q Consensus        46 ~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~   94 (105)
                      ...|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|+|+|..
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v   93 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-----------ISPCVVCRGAGQA   93 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-----------SSCCSSSSSCSEE
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-----------CCcCCCCCCeeEE
Confidence            578999999993           4799999999763           3489999999873

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.72  E-value=9.4e-06  Score=48.79  Aligned_cols=24  Identities=42%  Similarity=1.027  Sum_probs=18.0

Q ss_pred             cceeCCCCccccc---ccCccCCcccc
Q 034037           81 NPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        81 ~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      .+.+||.|+|+|+   .+|+.|+|+|+
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~   34 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGV   34 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSE
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEE
Confidence            5667888888887   47888888774

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.47  E-value=5e-05  Score=57.29  Aligned_cols=39  Identities=31%  Similarity=0.785  Sum_probs=31.9

Q ss_pred             cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ...|+.|+|+|.               .+|+.|+|+|.+..         ...+|+.|+|+|.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~---------~~~~C~~C~G~g~  107 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID---------PKDRCKSCNGKKV  107 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC---------TTSBCSSSTTSCE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec---------cCCCCcccCCCce
Confidence            489999999994               37999999997531         2568999999986

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.31  E-value=8.1e-05  Score=44.64  Aligned_cols=25  Identities=36%  Similarity=0.841  Sum_probs=14.2

Q ss_pred             ccCCCCCcccEEEEccCCCCccccceeCCCCccccc
Q 034037           58 YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        58 ~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      .+|+.|+|+|.+.           ..+||.|+|+|+
T Consensus        10 ~~C~~C~GsG~~~-----------~~~C~~C~G~G~   34 (53)
T 2bx9_A           10 VACPKCERAGEIE-----------GTPCPACSGKGV   34 (53)
T ss_dssp             EECTTTTTSSEET-----------TEECTTTTTSSE
T ss_pred             ccCCCCcceeccC-----------CCCCccCCCCcc
Confidence            3566666666541           246666666665

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.27  E-value=0.00011  Score=44.10  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=21.6

Q ss_pred             cccCCCCcCccc---ccCCCCCcccEEEEc
Q 034037           46 AMPCGVCKGKGF---YICKLCKGNATIEWS   72 (105)
Q Consensus        46 ~~~C~~C~GsG~---~~C~~C~G~G~i~~~   72 (105)
                      ..+|+.|+|+|.   ..|+.|+|+|.+...
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            468899999984   678999998887664

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.17  E-value=0.00018  Score=43.07  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=23.1

Q ss_pred             cccCCCCcCccc---ccCCCCCcccEEEEc
Q 034037           46 AMPCGVCKGKGF---YICKLCKGNATIEWS   72 (105)
Q Consensus        46 ~~~C~~C~GsG~---~~C~~C~G~G~i~~~   72 (105)
                      ...|+.|+|+|.   .+|+.|+|+|++...
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEEE
Confidence            468999999994   689999999998764

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=85.88  E-value=0.04  Score=47.18  Aligned_cols=51  Identities=14%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCCcccCCCCcCcc---------cccCCCCCcccEEEEc----------cCCCCccccceeCCCCccccc
Q 034037           43 KKFAMPCGVCKGKG---------FYICKLCKGNATIEWS----------PLYDPVFINPCLCPTCEGNRV   93 (105)
Q Consensus        43 ~~~~~~C~~C~GsG---------~~~C~~C~G~G~i~~~----------~~~~g~~~~~~~Cp~C~G~G~   93 (105)
                      ..+.+.|+.|+|+|         ..+|+.|+|+....-.          .......+....|..|+..+.
T Consensus       188 v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~  257 (669)
T 3pmq_A          188 LVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP  257 (669)
T ss_dssp             CCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred             eccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence            44678999999988         2589999998421100          000111134567888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.43
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.43
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.15
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.99
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	97.44

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.4e-14  Score=90.04  Aligned_cols=58  Identities=29%  Similarity=0.738  Sum_probs=49.8

Q ss_pred             CCcccCCCCcCccc------ccCCCCCcccEEEEccCCCCccccceeCCCCccccc---ccCccCCcccc
Q 034037           44 KFAMPCGVCKGKGF------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRV---QRCLNCLGKGF  104 (105)
Q Consensus        44 ~~~~~C~~C~GsG~------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~  104 (105)
                      +++++|+.|+|+|.      .+|+.|+|+|++....   +.++.+++||.|+|+|+   .+|+.|+|+|+
T Consensus         9 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~   75 (79)
T d1exka_           9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ---GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGR   75 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE---TTEEEEEECTTTTTSSEECSSBCGGGTTSSE
T ss_pred             eeeccCCCCcCcccCCCccceeCCCccceeEEEEec---ccceeeEECcccCcceeECCCCCCCCCCceE
Confidence            46789999999993      6799999999987654   34677889999999998   49999999986

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.4e-14  Score=89.89  Aligned_cols=60  Identities=25%  Similarity=0.528  Sum_probs=49.4

Q ss_pred             CcccCCCCcCcc-----cccCCCCCcccEEEEc-cCCCCccccceeCCCCcccccc-----cCccCCcccc
Q 034037           45 FAMPCGVCKGKG-----FYICKLCKGNATIEWS-PLYDPVFINPCLCPTCEGNRVQ-----RCLNCLGKGF  104 (105)
Q Consensus        45 ~~~~C~~C~GsG-----~~~C~~C~G~G~i~~~-~~~~g~~~~~~~Cp~C~G~G~~-----~C~~C~G~G~  104 (105)
                      +.++|+.|+|+|     ..+|+.|+|+|++... +..+..++...+||.|+|+|+.     +|+.|+|+|+
T Consensus         1 r~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~   71 (74)
T d1nlta3           1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKV   71 (74)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCE
T ss_pred             CccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeE
Confidence            357899999999     3679999999998875 3333445578899999999973     7999999986

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4.2e-07  Score=56.49  Aligned_cols=39  Identities=28%  Similarity=0.675  Sum_probs=31.7

Q ss_pred             CcccCCCCcCccc-----------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc
Q 034037           45 FAMPCGVCKGKGF-----------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ   94 (105)
Q Consensus        45 ~~~~C~~C~GsG~-----------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~   94 (105)
                      ....|+.|+|+|.           .+|+.|+|+|++.           ..+|+.|+|+|.+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v   76 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRV   76 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeEC-----------CCCCCCCCCceEe
Confidence            4577999999993           4799999999872           2489999999974

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1.4e-06  Score=53.54  Aligned_cols=40  Identities=30%  Similarity=0.780  Sum_probs=31.9

Q ss_pred             cccCCCCcCccc---------------ccCCCCCcccEEEEccCCCCccccceeCCCCcccccc
Q 034037           46 AMPCGVCKGKGF---------------YICKLCKGNATIEWSPLYDPVFINPCLCPTCEGNRVQ   94 (105)
Q Consensus        46 ~~~C~~C~GsG~---------------~~C~~C~G~G~i~~~~~~~g~~~~~~~Cp~C~G~G~~   94 (105)
                      ...|+.|+|+|.               .+|+.|+|+|++..         ...+|+.|+|+|.+
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~---------~~~~C~~C~G~g~v   72 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID---------PKDRCKSCNGKKVE   72 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC---------TTSBCSSSTTSCEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC---------CCCCCCCCCCeeEe
Confidence            567999999992               47999999997532         23489999999863

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.44  E-value=4.1e-06  Score=52.07  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             cCCCCcCccc---------ccCCCCCcccEEEEccC-CCCccccceeCCCCccccc---ccCccCCccccC
Q 034037           48 PCGVCKGKGF---------YICKLCKGNATIEWSPL-YDPVFINPCLCPTCEGNRV---QRCLNCLGKGFD  105 (105)
Q Consensus        48 ~C~~C~GsG~---------~~C~~C~G~G~i~~~~~-~~g~~~~~~~Cp~C~G~G~---~~C~~C~G~G~~  105 (105)
                      .|..|+++|.         ..|..|+|++....... ....+..-..|+.|.+.++   ..|.+|++.|+.
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            6999999883         46999999987544321 1223446688999999887   489999999863