Citrus Sinensis ID: 034106

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Secondary Structure (PSIPRED)
ccccHHHHHHcHHHHHHccHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHcccHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHEEEEEHHHHHHHHHHcccccHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhkdplfwhdnitnfeeNDFQILRVLLTILDTSSDPRALAVACFdlsqfiqyhpagrVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Flexible Loop (DISEMBL)
mhkdplfwHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMnhentevtksALLCIQRLFLGAKYASFLQA
Low Complexity Region (SEG)
MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Disordered region (IsUnstruct)
*****LFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASF***
Disordered Region (DISOPRED)
MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Disordered Region (DISEMBL)
MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Disordered Region (DISPRO)
***DPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9LX65	441	V-type proton ATPase subu	yes	no	1.0	0.233	0.844	7e-47
Q84ZC0	452	Probable V-type proton AT	yes	no	0.990	0.225	0.803	2e-46
Q9U5N0	475	V-type proton ATPase subu	N/A	no	0.902	0.195	0.376	3e-16
Q8BVE3	483	V-type proton ATPase subu	yes	no	0.902	0.192	0.344	8e-16
O46563	483	V-type proton ATPase subu	yes	no	0.902	0.192	0.344	8e-16
Q9TVC1	483	V-type proton ATPase subu	yes	no	0.902	0.192	0.344	9e-16
Q9UI12	483	V-type proton ATPase subu	yes	no	0.902	0.192	0.344	1e-15
Q9V3J1	468	V-type proton ATPase subu	no	no	0.902	0.198	0.354	1e-15
Q619W9	470	Probable V-type proton AT	N/A	no	0.902	0.197	0.322	2e-14
Q22494	470	Probable V-type proton AT	yes	no	0.990	0.217	0.314	2e-14

>sp|Q9LX65|VATH_ARATH V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 95/103 (92%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHK+  FW +N+T FEENDFQILRVLLTILDTSSDPR+LAVACFD+SQFIQYH AGRVIV
Sbjct: 339 MHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIV 398

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
            DLKAKERVMKL+NHEN EVTK+A+LCIQRL LGAKYASFLQA
Sbjct: 399 ADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84ZC0|VATH_ORYSJ Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 94/102 (92%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP FW +NI NFEENDFQILRVL+TI+DTS+D  ALAVAC+DLSQF+QYHP+GR++V
Sbjct: 350 MHKDPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVV 409

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
            DLKAK+RVMKLMNHEN EV K+ALLC+QRLFLGAKYASFLQ
Sbjct: 410 ADLKAKDRVMKLMNHENAEVRKNALLCVQRLFLGAKYASFLQ 451

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9U5N0|VATH_MANSE V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 60/93 (64%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E   ++LR L+ +L+ S DP  LAVAC+D+ ++++++P G+ I+
Sbjct: 356 VHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHII 415

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+RVM L++H++  V   ALL +Q+L +
Sbjct: 416 EQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Manduca sexta (taxid: 7130)

>sp|Q8BVE3|VATH_MOUSE V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct: 369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct: 429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Involved in the endocytosis mediated by clathrin-coated pits, required for the formation of endosomes.

Mus musculus (taxid: 10090)

>sp|O46563|VATH_BOVIN V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct: 369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct: 429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Involved in the endocytosis mediated by clathrin-coated pits, required for the formation of endosomes.

Bos taurus (taxid: 9913)

>sp|Q9TVC1|VATH_PIG V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct: 369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct: 429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Involved in the endocytosis mediated by clathrin-coated pits, required for the formation of endosomes.

Sus scrofa (taxid: 9823)

>sp|Q9UI12|VATH_HUMAN V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct: 369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct: 429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). Involved in the endocytosis mediated by clathrin-coated pits, required for the formation of endosomes.

Homo sapiens (taxid: 9606)

>sp|Q9V3J1|VATH_DROME V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=2 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 61/93 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++LR+L+ +L+TS D   L+VACFD+ ++++++P G+ ++
Sbjct: 348 VHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVL 407

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K+ VM+ + HE+  V   ALL +Q+L +
Sbjct: 408 EQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Drosophila melanogaster (taxid: 7227)

>sp|Q619W9|VATH2_CAEBR Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis briggsae GN=vha-15 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 59/93 (63%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N   F +  ++++++L+ +L++SSDP  L VA  D+ ++++++P G+ +V
Sbjct: 356 VHKSEKFWRENAAKFNDKQYEVVKILIKLLESSSDPLILCVASHDIGEYVRHYPRGKTVV 415

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
              + K  VM+L+  E+  V   ALL +Q+L +
Sbjct: 416 EQQQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q22494|VATH2_CAEEL Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis elegans GN=vha-15 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 65/108 (60%), Gaps = 6/108 (5%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N + F +  F+++++L+ +L++S DP  L VA  D+ ++++++P G+ +V
Sbjct: 356 VHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTVV 415

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRL------FLGAKYASFLQ 102
              + K  VM+L+  E+  V   ALL +Q+L      +LG +  S +Q
Sbjct: 416 EQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMVHNWEYLGKQLDSDVQ 463

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
225454716	460	PREDICTED: V-type proton ATPase subunit	1.0	0.223	0.912	5e-51
297737281	483	unnamed protein product [Vitis vinifera]	1.0	0.213	0.912	7e-51
224124112	452	predicted protein [Populus trichocarpa]	0.990	0.225	0.911	1e-49
388494890	429	unknown [Lotus japonicus]	1.0	0.240	0.883	8e-49
224145903	447	predicted protein [Populus trichocarpa]	0.990	0.228	0.892	9e-49
255558087	446	vacuolar ATP synthase subunit h, putativ	1.0	0.230	0.883	1e-48
356498440	452	PREDICTED: V-type proton ATPase subunit	0.990	0.225	0.882	2e-48
357518453	448	V-type proton ATPase subunit H [Medicago	0.990	0.227	0.872	5e-48
217073296	452	unknown [Medicago truncatula] gi|3884915	0.990	0.225	0.872	6e-48
356559428	452	PREDICTED: V-type proton ATPase subunit	0.990	0.225	0.862	4e-47

>gi|225454716|ref|XP_002271887.1| PREDICTED: V-type proton ATPase subunit H-like [Vitis vinifera]

 Score =  204 bits (519), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 100/103 (97%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HKDP+FW DNI+NFEENDFQILRVL+TILDTSSDPRALAVACFDLSQFIQYHPAGRVIV
Sbjct: 358 VHKDPMFWRDNISNFEENDFQILRVLITILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 417

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
            DLKAKERVMKLMNHEN EVTK++LLCIQRLFLGAKYASFLQA
Sbjct: 418 NDLKAKERVMKLMNHENAEVTKNSLLCIQRLFLGAKYASFLQA 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737281|emb|CBI26482.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (518), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 100/103 (97%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HKDP+FW DNI+NFEENDFQILRVL+TILDTSSDPRALAVACFDLSQFIQYHPAGRVIV
Sbjct: 381 VHKDPMFWRDNISNFEENDFQILRVLITILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 440

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
            DLKAKERVMKLMNHEN EVTK++LLCIQRLFLGAKYASFLQA
Sbjct: 441 NDLKAKERVMKLMNHENAEVTKNSLLCIQRLFLGAKYASFLQA 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124112|ref|XP_002319248.1| predicted protein [Populus trichocarpa] gi|222857624|gb|EEE95171.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 98/102 (96%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP FW +NITNFEENDFQILRVL+TILDTS+DPRALAVACFDLSQFIQ+HPAGRVIV
Sbjct: 350 MHKDPAFWRENITNFEENDFQILRVLITILDTSNDPRALAVACFDLSQFIQHHPAGRVIV 409

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           TDLK KERVMKLMNHEN EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 410 TDLKTKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQ 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494890|gb|AFK35511.1| unknown [Lotus japonicus]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/103 (88%), Positives = 98/103 (95%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKD +FW +NITNFEENDFQILRVL+TILDTSSDPR LAVACFDLSQF+Q+HPAGR IV
Sbjct: 327 MHKDSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIV 386

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
           TDLKAKERVMKLMNHEN EVTK+ALLCIQRLFLG+KYASFLQA
Sbjct: 387 TDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 429

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145903|ref|XP_002325805.1| predicted protein [Populus trichocarpa] gi|222862680|gb|EEF00187.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 98/102 (96%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHK+P FW +N TNFEENDFQILRVL+TILDTS+DPRALAVACFDLSQFIQYHPAGR+IV
Sbjct: 345 MHKNPAFWCENFTNFEENDFQILRVLVTILDTSNDPRALAVACFDLSQFIQYHPAGRIIV 404

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           TDLKAKER+MKLMNHEN EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 405 TDLKAKERMMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQ 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558087|ref|XP_002520072.1| vacuolar ATP synthase subunit h, putative [Ricinus communis] gi|223540836|gb|EEF42396.1| vacuolar ATP synthase subunit h, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/103 (88%), Positives = 98/103 (95%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP+FW +N+ NFEENDFQILRVL+TILDTS+D RALAVACFDLSQFIQ HPAGR+IV
Sbjct: 344 MHKDPIFWRENLNNFEENDFQILRVLITILDTSNDSRALAVACFDLSQFIQNHPAGRIIV 403

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
           TDLKAKERVMKLMNHEN EVTK+ALLCIQRLFLGAKYASFLQA
Sbjct: 404 TDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498440|ref|XP_003518060.1| PREDICTED: V-type proton ATPase subunit H-like [Glycine max]

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/102 (88%), Positives = 97/102 (95%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP+FW +NI NFEENDFQILRVLLTILDTSSDPR LAVAC+DLSQFIQ+H AGR+IV
Sbjct: 350 MHKDPIFWRENINNFEENDFQILRVLLTILDTSSDPRTLAVACYDLSQFIQHHSAGRIIV 409

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           +DLKAKERVMKLMNHEN EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 410 SDLKAKERVMKLMNHENVEVTKNALLCIQRLFLGAKYASFLQ 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518453|ref|XP_003629515.1| V-type proton ATPase subunit H [Medicago truncatula] gi|355523537|gb|AET03991.1| V-type proton ATPase subunit H [Medicago truncatula]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 98/102 (96%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP+FW +NITNFEE+DFQILRVLLTILD+S+DPR LAVACFD+SQFIQ HPAGR+IV
Sbjct: 346 MHKDPIFWRENITNFEEHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQSHPAGRIIV 405

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           TDLKAKERVMKLMNHE+ EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 406 TDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQ 447

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073296|gb|ACJ85007.1| unknown [Medicago truncatula] gi|388491592|gb|AFK33862.1| unknown [Medicago truncatula]

 Score =  194 bits (492), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 98/102 (96%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP+FW +NITNFEE+DFQILRVLLTILD+S+DPR LAVACFD+SQFIQ HPAGR+IV
Sbjct: 350 MHKDPIFWRENITNFEEHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQSHPAGRIIV 409

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           TDLKAKERVMKLMNHE+ EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 410 TDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQ 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559428|ref|XP_003548001.1| PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Glycine max] gi|356559430|ref|XP_003548002.1| PREDICTED: V-type proton ATPase subunit H-like isoform 2 [Glycine max]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           MHKDP+FW +NI NFEENDFQILRVL+TILDTS+DPR LAVAC+DLSQFIQ H AGR+IV
Sbjct: 350 MHKDPIFWRENINNFEENDFQILRVLITILDTSNDPRTLAVACYDLSQFIQCHSAGRIIV 409

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102
           +DLKAKERVMKLMNHEN EVTK+ALLCIQRLFLGAKYASFLQ
Sbjct: 410 SDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQ 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2083881	441	AT3G42050 [Arabidopsis thalian	1.0	0.233	0.844	7.3e-43
UNIPROTKB|G3V126	443	ATP6V1H "ATPase, H+ transporti	0.902	0.209	0.344	3.1e-15
UNIPROTKB|F1MZL6	465	ATP6V1H "V-type proton ATPase	0.902	0.2	0.344	3.5e-15
FB|FBgn0027779	468	VhaSFD "Vacuolar H[+]-ATPase S	0.902	0.198	0.354	3.6e-15
UNIPROTKB|F1MZL8	483	ATP6V1H "V-type proton ATPase	0.902	0.192	0.344	3.9e-15
UNIPROTKB|O46563	483	ATP6V1H "V-type proton ATPase	0.902	0.192	0.344	3.9e-15
UNIPROTKB|E2RHZ8	483	ATP6V1H "Uncharacterized prote	0.902	0.192	0.344	3.9e-15
UNIPROTKB|Q9UI12	483	ATP6V1H "V-type proton ATPase	0.902	0.192	0.344	3.9e-15
UNIPROTKB|Q9TVC1	483	ATP6V1H "V-type proton ATPase	0.902	0.192	0.344	3.9e-15
MGI|MGI:1914864	483	Atp6v1h "ATPase, H+ transporti	0.902	0.192	0.344	3.9e-15

TAIR|locus:2083881 AT3G42050 [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 87/103 (84%), Positives = 95/103 (92%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             MHK+  FW +N+T FEENDFQILRVLLTILDTSSDPR+LAVACFD+SQFIQYH AGRVIV
Sbjct:   339 MHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIV 398

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 103
              DLKAKERVMKL+NHEN EVTK+A+LCIQRL LGAKYASFLQA
Sbjct:   399 ADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441

GO:0005634 "nucleus" evidence=ISM

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|G3V126 ATP6V1H "ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   329 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 388

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   389 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 421

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|F1MZL6 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   351 VHKSEKFWRENAARLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 410

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   411 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 443

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

FB|FBgn0027779 VhaSFD "Vacuolar H[+]-ATPase SFD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 33/93 (35%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++LR+L+ +L+TS D   L+VACFD+ ++++++P G+ ++
Sbjct:   348 VHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVL 407

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM+ + HE+  V   ALL +Q+L +
Sbjct:   408 EQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=NAS

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MZL8 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAARLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0006897 "endocytosis" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

UNIPROTKB|O46563 ATP6V1H "V-type proton ATPase subunit H" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

UNIPROTKB|E2RHZ8 ATP6V1H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0006897 "endocytosis" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

UNIPROTKB|Q9UI12 ATP6V1H "V-type proton ATPase subunit H" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007035 "vacuolar acidification" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0006897 "endocytosis" evidence=IDA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=NAS

GO:0016887 "ATPase activity" evidence=NAS

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

UNIPROTKB|Q9TVC1 ATP6V1H "V-type proton ATPase subunit H" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

MGI|MGI:1914864 Atp6v1h "ATPase, H+ transporting, lysosomal V1 subunit H" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 32/93 (34%), Positives = 61/93 (65%)

Query:     1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
             +HK   FW +N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++
Sbjct:   369 VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVI 428

Query:    61 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
               L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:   429 EQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006897 "endocytosis" evidence=ISO

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LX65	VATH_ARATH	No assigned EC number	0.8446	1.0	0.2335	yes	no
Q84ZC0	VATH_ORYSJ	No assigned EC number	0.8039	0.9902	0.2256	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam11698	119	pfam11698, V-ATPase_H_C, V-ATPase subunit H	6e-43
cd00256	429	cd00256, VATPase_H, VATPase_H, regulatory vacuolar	2e-42
COG5231	432	COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subu	1e-16

>gnl|CDD|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H

 Score =  135 bits (343), Expect = 6e-43
 Identities = 42/93 (45%), Positives = 63/93 (67%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +H    FW +N   FEEN++++L+ L  IL+TS DP  LAVAC D+ +F++ +P G+ I+
Sbjct: 23  VHTSEKFWKENAMKFEENNYELLKKLAKILETSDDPLTLAVACNDIGEFVRLYPEGKNIL 82

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93
             L  K RVM+LM+HE+ EV   ALL +Q+L +
Sbjct: 83  EKLGVKARVMELMSHEDPEVRYEALLAVQKLMV 115

The yeast Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase) is a multisubunit complex responsible for acidifying organelles. It functions as an ATP dependent proton pump that transports protons across a lipid bilayer. This domain corresponds to the C terminal domain of the H subunit of V-ATPase. The N-terminal domain is required for the activation of the complex whereas the C-terminal domain is required for coupling ATP hydrolysis to proton translocation. Length = 119

>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

 Score =  143 bits (362), Expect = 2e-42
 Identities = 37/97 (38%), Positives = 64/97 (65%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60
           +HK   FW +N     E ++++L++L+ +L+TS DP  LAVAC D+ ++++++P G+ +V
Sbjct: 333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVV 392

Query: 61  TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKY 97
             L  K+RVM+L+NHE+  V   ALL +Q+L +    
Sbjct: 393 EQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHNWE 429

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. Length = 429

>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 2   HKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVT 61
           H    FW  N+    +++++I++VL   L +++    + VAC D+ Q ++  P    +++
Sbjct: 337 HHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396

Query: 62  DLKAKERVMKLMNHENTEVTKSALLCIQRL 91
               KE +M L+NH++ +V   AL  +Q  
Sbjct: 397 KYGVKEIIMNLINHDDDDVKFEALQALQTC 426

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	100.0
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	100.0
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	100.0
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	99.97
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.15
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.14
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	96.85
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.34
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	95.8
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.71
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	93.96
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.78
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.14
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	93.12
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.06
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	92.3
PF09450	106	DUF2019: Domain of unknown function (DUF2019); Int	92.26
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	92.08
KOG1048	717	consensus Neural adherens junction protein Plakoph	91.91
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.59
PRK09687	280	putative lyase; Provisional	88.92
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	86.9
PF05804	708	KAP: Kinesin-associated protein (KAP)	86.85
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	85.7
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.31
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.41
PF02084	238	Bindin: Bindin; InterPro: IPR000775 Bindin, the ma	83.17
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	83.1
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	82.89
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	80.54
cd00183	76	TFIIS_I N-terminal domain (domain I) of transcript	80.52
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	80.49

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=2.2e-51  Score=290.89  Aligned_cols=95  Identities=49%  Similarity=0.889  Sum_probs=89.9

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV   80 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eV   80 (103)
                      ||+||+||+||+.||+|++|+++|+|+++|++|+||+++||||||||+|||+||+||++++++|+|++||+||+|+||+|
T Consensus        23 ~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eV  102 (119)
T PF11698_consen   23 VHKSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEV  102 (119)
T ss_dssp             GGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHH
T ss_pred             CCCCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHH
Confidence            69999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcch
Q 034106           81 TKSALLCIQRLFLGA   95 (103)
Q Consensus        81 r~eAL~avQklm~~~   95 (103)
                      |||||+|+|++|+++
T Consensus       103 r~eAL~avQklm~~~  117 (119)
T PF11698_consen  103 RYEALLAVQKLMVNN  117 (119)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999988

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=100.00  E-value=3.1e-46  Score=308.27  Aligned_cols=95  Identities=39%  Similarity=0.795  Sum_probs=94.1

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV   80 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eV   80 (103)
                      ||+||+||+||++||+||||+++|+|++||++|+||+++||||||||||||+||+||.+++++|+|++||+||+|+||+|
T Consensus       333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V  412 (429)
T cd00256         333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV  412 (429)
T ss_pred             CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcch
Q 034106           81 TKSALLCIQRLFLGA   95 (103)
Q Consensus        81 r~eAL~avQklm~~~   95 (103)
                      |||||+|+||+|+|+
T Consensus       413 r~eAL~avQklm~~~  427 (429)
T cd00256         413 RYEALLAVQKLMVHN  427 (429)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999998

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=100.00  E-value=1.6e-44  Score=297.52  Aligned_cols=95  Identities=40%  Similarity=0.812  Sum_probs=94.2

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV   80 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eV   80 (103)
                      +|+||+||+|||.+|+||||+++|.|+++|++|+||.+|||||||||||||+||+||.+++++|||++||+||+|+||+|
T Consensus       346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V  425 (442)
T KOG2759|consen  346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV  425 (442)
T ss_pred             cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcch
Q 034106           81 TKSALLCIQRLFLGA   95 (103)
Q Consensus        81 r~eAL~avQklm~~~   95 (103)
                      ||+||+|+|++|+++
T Consensus       426 ry~ALlavQ~lm~~~  440 (442)
T KOG2759|consen  426 RYHALLAVQKLMVHN  440 (442)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999999998

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.97  E-value=6e-32  Score=219.82  Aligned_cols=94  Identities=26%  Similarity=0.496  Sum_probs=90.7

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV   80 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eV   80 (103)
                      +|++++||..|+++|+++||+++|+|+++|+...+.+++||||||||++||.+|+|+.++.+.|+|++||+||+|+||+|
T Consensus       336 ~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~V  415 (432)
T COG5231         336 YHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDV  415 (432)
T ss_pred             cccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchh
Confidence            69999999999999999999999999999987677789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 034106           81 TKSALLCIQRLFLG   94 (103)
Q Consensus        81 r~eAL~avQklm~~   94 (103)
                      |||||+|+|.+|+.
T Consensus       416 kfeAl~a~q~~i~~  429 (432)
T COG5231         416 KFEALQALQTCISS  429 (432)
T ss_pred             hHHHHHHHHHHHhh
Confidence            99999999999964

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.49  E-value=0.00029  Score=55.17  Aligned_cols=73  Identities=27%  Similarity=0.346  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      +-+++|+.+|+.++||.+..+|+.=+|.. ..||..+.++.++||-..|-.++..++|.||-.||.|+.-+=.+
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN   84 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence            56799999999899999999999999985 78999999999999999999999999999999999998755433

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.15  E-value=0.001  Score=42.86  Aligned_cols=71  Identities=20%  Similarity=0.305  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ..+..|+++|. ++|+.+...||.-|+.++...|..+.++.+.|+-..+.+++..++.+++.+|+.++.-+.
T Consensus        49 ~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          49 GGLPALVQLLK-SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             CChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            67888899995 468888899999999999999888898888899999999999999999999999987653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.14  E-value=0.001  Score=42.85  Aligned_cols=73  Identities=25%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++..|+++|.. .++.+...|+.=|+.+....|.++..+-+.|+-..+.++|+++|++|+..|+.++..+..+.
T Consensus         8 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           8 GLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             ChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            67889999954 45667777777799999998988888888899999999999999999999999999987655

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=96.85  E-value=0.0034  Score=35.51  Aligned_cols=38  Identities=16%  Similarity=0.339  Sum_probs=34.6

Q ss_pred             cchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           54 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        54 p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      |+.+..+-+.|+=..+.+||.++|++|+.+|+-|+.-|
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl   39 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL   39 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            56788888999999999999999999999999998765

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.69  E-value=0.0031  Score=34.07  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=22.6

Q ss_pred             HHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           67 ERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        67 ~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ..+++++++++++||+.|..|+..+.
T Consensus         3 p~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    3 PILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            35789999999999999999999886

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.34  E-value=0.0021  Score=40.27  Aligned_cols=58  Identities=24%  Similarity=0.391  Sum_probs=44.5

Q ss_pred             HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      |..|++.|.++.|+.+-.-|+.=||++-.     .      .+-..+.++++++|+.||.+|..++.++
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i   58 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----P------EAIPALIELLKDEDPMVRRAAARALGRI   58 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----H------HHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----H------hHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            45688888667888888888888884411     1      3467788889999999999999998764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=95.80  E-value=0.032  Score=30.30  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             cchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           54 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        54 p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      |..+..+-+.|+=..+++||.++|++++.+|+.++.-+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl   39 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL   39 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            34667777789999999999999999999999998765

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.028  Score=46.34  Aligned_cols=85  Identities=24%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             hHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC-CHHhHHHHHHHHH
Q 034106           11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCIQ   89 (103)
Q Consensus        11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQ   89 (103)
                      ||..|...  .-+..|..+| +++|+.+=+-|+.=||..++..|....-+-+.|+...+|..++++ +..+|-.||-|+.
T Consensus       116 nAndl~~~--ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ais  192 (342)
T KOG2160|consen  116 NANDLISL--GGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAIS  192 (342)
T ss_pred             hHHhHhhc--cCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHH
Confidence            44444433  2334455577 567888899999999999999999999999999999999999875 5678899999999


Q ss_pred             HHhcchhhh
Q 034106           90 RLFLGAKYA   98 (103)
Q Consensus        90 klm~~~~~~   98 (103)
                      -++-|+++.
T Consensus       193 sLIRn~~~g  201 (342)
T KOG2160|consen  193 SLIRNNKPG  201 (342)
T ss_pred             HHHhcCcHH
Confidence            999888554

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=93.96  E-value=0.12  Score=37.27  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             HccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           52 YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        52 ~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      -.++.|.+-..=..++.++.|+.|+|++|+..||.|+-.+=
T Consensus         5 kf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k   45 (141)
T PF07539_consen    5 KFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWK   45 (141)
T ss_pred             hcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            34566777766667899999999999999999999998763

It is believed to be involved in processing of non-coding RNA [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.78  E-value=0.099  Score=38.02  Aligned_cols=45  Identities=27%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             hHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           46 LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        46 igefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +|.++..||   .+++..  -..+...|.+++|.||+.||.++..|+.+.
T Consensus        12 l~DL~~r~~---~~ve~~--~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d   56 (178)
T PF12717_consen   12 LGDLCIRYP---NLVEPY--LPNLYKCLRDEDPLVRKTALLVLSHLILED   56 (178)
T ss_pred             HHHHHHhCc---HHHHhH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence            444556676   456653  467888999999999999999999998664

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=0.27  Score=40.70  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=60.7

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~   95 (103)
                      -+++|+.+|+++++..+-.=|++=|+..+|+.|.|..-.-.++|=..++..|+.  .+...|.-|+.=++.++...
T Consensus       167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~  242 (342)
T KOG2160|consen  167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED  242 (342)
T ss_pred             cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence            689999999744443444778999999999999999999999999999999998  46666677888888877544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=93.12  E-value=0.055  Score=45.90  Aligned_cols=74  Identities=26%  Similarity=0.428  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +.+-.|.+++ .|.||.++.=||--|..+..---+..+++-+-|+-.|+.+|++|++..|.-.||.++.-++..+
T Consensus       243 qalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~  316 (526)
T COG5064         243 QALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS  316 (526)
T ss_pred             HHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence            3444556666 4789999999999998777655577778888899999999999999999999999988777544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=93.06  E-value=0.23  Score=41.88  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             HHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhhhh
Q 034106           25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYAS   99 (103)
Q Consensus        25 ~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~~~   99 (103)
                      .|...| .+.+|.+..-+|.-|+..+++-.....++.+-+.=..|+.++.++|.+|...|..++.++..+.+...
T Consensus        81 ~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~  154 (503)
T PF10508_consen   81 FLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE  154 (503)
T ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence            344444 35678899999999999998876667778778888999999999999999999999999987775543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.30  E-value=0.32  Score=39.55  Aligned_cols=71  Identities=23%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             hccHHHHHHHHHHhc---cCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106           17 ENDFQILRVLLTILD---TSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL   93 (103)
Q Consensus        17 e~~~~llk~L~~lL~---~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~   93 (103)
                      +.+-+++...++-|.   .++||.+.+.|..-|+.+.     ...+++.+  -..|.++++|++|.||..|+.|+-++.-
T Consensus        71 ~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l--~~~v~~ll~~~~~~VRk~A~~~l~~i~~  143 (526)
T PF01602_consen   71 HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPL--IPDVIKLLSDPSPYVRKKAALALLKIYR  143 (526)
T ss_dssp             TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHH--HHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHH--HHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            444454444444442   3567888888888888865     45566654  4778999999999999999999998874


Q ss_pred             c
Q 034106           94 G   94 (103)
Q Consensus        94 ~   94 (103)
                      .
T Consensus       144 ~  144 (526)
T PF01602_consen  144 K  144 (526)
T ss_dssp             H
T ss_pred             c
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria

Probab=92.26  E-value=0.12  Score=36.36  Aligned_cols=48  Identities=19%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             eeehhcchhHHHHHHccchhHHHHhh---C--hHHHHHhhhcCCCHHhHHHHH
Q 034106           38 ALAVACFDLSQFIQYHPAGRVIVTDL---K--AKERVMKLMNHENTEVTKSAL   85 (103)
Q Consensus        38 ~laVAc~Digefvr~~p~gr~i~~~l---g--~K~~vM~Lm~h~d~eVr~eAL   85 (103)
                      --|+.-.|...+=|+|-.=..+..+|   |  +...++.|+.|||+.||..|=
T Consensus        16 ~~A~~~~d~~~~Nr~~~k~~~~~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA   68 (106)
T PF09450_consen   16 GEAIDRGDARTANRLYDKMIRIYDELKSRGGDQRDALLPLLKHPNMQVRLWAA   68 (106)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCChhHHHHHH
Confidence            34788899999999997777777776   3  568899999999999998763

; PDB: 2I9C_A.

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.08  E-value=0.13  Score=44.60  Aligned_cols=77  Identities=29%  Similarity=0.399  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhh
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKY   97 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~   97 (103)
                      -++|-.|..+| .+.|+.+++=||-=|..+...-|+.-+.+-+.|+=.++-.|+.|+.+.|+-.||+++.-++..+++
T Consensus       236 ~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~  312 (514)
T KOG0166|consen  236 APILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE  312 (514)
T ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence            45677777777 578999999999999999999999999999999999999999999999999999998876665543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=91.91  E-value=0.36  Score=43.36  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=62.5

Q ss_pred             HHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           24 RVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        24 k~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      ..-+.+|+ +.||.+.+.|..=|++.+.-.-.+|.-+.++|+--++..|+.|++++|..+|.=|+-.|+=.
T Consensus       236 pe~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~  305 (717)
T KOG1048|consen  236 PEVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG  305 (717)
T ss_pred             HHHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence            34566674 78999999999999999999999999999999999999999999999999999999887743

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=91.59  E-value=0.22  Score=29.15  Aligned_cols=27  Identities=15%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      +-..++.+|.+++++||..|..|+..|
T Consensus        29 ~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen   29 LLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            456777899999999999999998653

...

>PRK09687 putative lyase; Provisional

Probab=88.92  E-value=0.81  Score=35.99  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHcc-------------------chh-HHH---HhhC---hHHHHHhhhc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-------------------AGR-VIV---TDLK---AKERVMKLMN   74 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p-------------------~gr-~i~---~~lg---~K~~vM~Lm~   74 (103)
                      +.+..|..++.+..|+.+.+.|+.=||++....+                   +-| ..+   .++|   +-..+..+++
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~  169 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK  169 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence            4566666665455677777777777776632111                   111 112   2223   3345566667


Q ss_pred             CCCHHhHHHHHHHHHHH
Q 034106           75 HENTEVTKSALLCIQRL   91 (103)
Q Consensus        75 h~d~eVr~eAL~avQkl   91 (103)
                      ++|++||+.|..++..+
T Consensus       170 d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        170 DPNGDVRNWAAFALNSN  186 (280)
T ss_pred             CCCHHHHHHHHHHHhcC
Confidence            88888888888888765

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.90  E-value=1.6  Score=35.41  Aligned_cols=72  Identities=25%  Similarity=0.352  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc---hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA---GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~---gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ....++.|++++.+-++|..+++++.=||||..+.|+   ...++..      +.+....++++||.++|.|..|+-...
T Consensus       412 ~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~------l~~~~~~~~~~vk~~ilt~~~Kl~~~~  485 (526)
T PF01602_consen  412 REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRS------LIENFIEESPEVKLQILTALAKLFKRN  485 (526)
T ss_dssp             HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHH------HHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHH------HHHhhccccHHHHHHHHHHHHHHHhhC
Confidence            3568999999998778889999999999999999998   3333332      233345578899999999999998655


Q ss_pred             h
Q 034106           96 K   96 (103)
Q Consensus        96 ~   96 (103)
                      +
T Consensus       486 ~  486 (526)
T PF01602_consen  486 P  486 (526)
T ss_dssp             C
T ss_pred             C
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=86.85  E-value=1.3  Score=39.68  Aligned_cols=81  Identities=14%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhccC-CCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch-hhh
Q 034106           21 QILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA   98 (103)
Q Consensus        21 ~llk~L~~lL~~s-~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~-~~~   98 (103)
                      .++..|+++|... +|...+.=.+|=.++|++|-+.-..++++-++-..+..||.+.|++||.-|=.|+--++-.. +|.
T Consensus       576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            5688999999643 44444444678899999985544555577889999999999999999999998888887666 665


Q ss_pred             hhh
Q 034106           99 SFL  101 (103)
Q Consensus        99 ~~~  101 (103)
                      .-+
T Consensus       656 ~ri  658 (708)
T PF05804_consen  656 ERI  658 (708)
T ss_pred             HHh
Confidence            433

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=85.70  E-value=1.3  Score=44.06  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      -+.+|.|+.+| ++.++.+..=+|-+|......-++.+..+-+.|+=..+.++|.|++++++..|+.++.-+-..+
T Consensus       403 ~daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n  477 (2102)
T PLN03200        403 AEAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV  477 (2102)
T ss_pred             ccchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            36788899999 4566778888999999999998888899988899999999999999999999999887776433

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.31  E-value=2.2  Score=30.89  Aligned_cols=82  Identities=24%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             HHhhhhccHHHHHHHHHHhccCCCccee---ehhcchhHHHHHHccc-hhHHHHhh--ChHHHHHhhhcCCCHHhHHHHH
Q 034106           12 ITNFEENDFQILRVLLTILDTSSDPRAL---AVACFDLSQFIQYHPA-GRVIVTDL--KAKERVMKLMNHENTEVTKSAL   85 (103)
Q Consensus        12 a~kf~e~~~~llk~L~~lL~~s~d~~~l---aVAc~Digefvr~~p~-gr~i~~~l--g~K~~vM~Lm~h~d~eVr~eAL   85 (103)
                      -..|.+.-..-++.|..+|+.++++.++   .++..+|-.+++.+|+ -|.+..-.  +.=.-++.+++.  +.+.-.||
T Consensus        58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l  135 (165)
T PF08167_consen   58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETAL  135 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHH
Confidence            4566667777889999999876666543   4556788899999998 66765442  122333444443  78888999


Q ss_pred             HHHHHHhcch
Q 034106           86 LCIQRLFLGA   95 (103)
Q Consensus        86 ~avQklm~~~   95 (103)
                      .+++.+|.+.
T Consensus       136 ~~L~~ll~~~  145 (165)
T PF08167_consen  136 DALATLLPHH  145 (165)
T ss_pred             HHHHHHHHHC
Confidence            9999999754

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=84.41  E-value=1.3  Score=29.87  Aligned_cols=29  Identities=14%  Similarity=0.096  Sum_probs=24.0

Q ss_pred             HHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           66 KERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        66 K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      =.-|+..++++|++|||.|..|+..+.-.
T Consensus        29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~   57 (97)
T PF12755_consen   29 LPPVLKCFDDQDSRVRYYACEALYNISKV   57 (97)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            35677899999999999999998877643

>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]

Probab=83.17  E-value=3.8  Score=32.48  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=42.9

Q ss_pred             cHHHHHHHHHHhccCCCcceeehhc---chhHHHHHHccchhHHHHhhC---hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           19 DFQILRVLLTILDTSSDPRALAVAC---FDLSQFIQYHPAGRVIVTDLK---AKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        19 ~~~llk~L~~lL~~s~d~~~laVAc---~Digefvr~~p~gr~i~~~lg---~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +-++.+.+..+|-..  +.-|-|=.   +|||=+.||+-.-.++|..+|   +++.|+.-|+.+.+|=-..|-..|+.-+
T Consensus       102 SAKvm~~ikavLgaT--KiDLPVDINDPYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeEEe~DAa~gvr~~v  179 (238)
T PF02084_consen  102 SAKVMEDIKAVLGAT--KIDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEEEQDAANGVRDNV  179 (238)
T ss_pred             cHHHHHHHHHHhccc--ccccccccCChhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Confidence            468889999998421  12233333   689999999877777777665   4444444444444443344444444444


Q ss_pred             cc
Q 034106           93 LG   94 (103)
Q Consensus        93 ~~   94 (103)
                      ++
T Consensus       180 ln  181 (238)
T PF02084_consen  180 LN  181 (238)
T ss_pred             hc
Confidence            33

The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=83.10  E-value=2.7  Score=41.93  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=64.6

Q ss_pred             cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch---
Q 034106           19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA---   95 (103)
Q Consensus        19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~---   95 (103)
                      .....|.|+.+|+.........||.--++-||-|.-.-|+-+.+-||-..|-+|+.++||++.-||-.-+-.+..|.   
T Consensus      1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200       1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred             cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence            35678999999976444445566666799999998888888888899999999999999999999987777666554   


Q ss_pred             hhhh
Q 034106           96 KYAS   99 (103)
Q Consensus        96 ~~~~   99 (103)
                      +|++
T Consensus      1853 ~~~~ 1856 (2102)
T PLN03200       1853 EYAS 1856 (2102)
T ss_pred             HHHH
Confidence            5653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=82.89  E-value=1.9  Score=31.49  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             cCCCcceeehhcchhHHHHHHccchhHHHHhh----ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           32 TSSDPRALAVACFDLSQFIQYHPAGRVIVTDL----KAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        32 ~s~d~~~laVAc~Digefvr~~p~gr~i~~~l----g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      ++.+|.+-..++.=+..++..+|.....++.-    ..-..|..+++++||+||..|-.++..+..+
T Consensus       141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  141 KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            56677776777777777888887111111111    2456788999999999999999999888644

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=80.54  E-value=2.2  Score=26.29  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=39.1

Q ss_pred             ccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC-CHHhHHHHHHHH
Q 034106           18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCI   88 (103)
Q Consensus        18 ~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~-d~eVr~eAL~av   88 (103)
                      .+.+++..|+++| +++|+.+-.-|+.=||.+      |     .-.+-..+.+++.++ ++.||..|..++
T Consensus        28 ~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i------~-----~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   28 GDPEAIPALIELL-KDEDPMVRRAAARALGRI------G-----DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC------H-----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh------C-----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            4457888888888 457776665566656654      1     112556677777664 667799999886

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Probab=80.52  E-value=12  Score=23.83  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=51.5

Q ss_pred             HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +..+...|+.+... .-.-.|-|+-...+..|--..++..-++=..|-.|-.|++|+|+..|-.-+.+|.
T Consensus         4 v~r~~~~l~~~~~~-~~~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk   72 (76)
T cd00183           4 VLRAKKKLEKKDSN-EEVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK   72 (76)
T ss_pred             HHHHHHHhhccccC-CCHHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            44555566443221 2244688888889999999999988776677889999999999999877776664

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=80.49  E-value=6.3  Score=30.26  Aligned_cols=70  Identities=20%  Similarity=0.373  Sum_probs=47.3

Q ss_pred             hhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           16 EENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        16 ~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      ++++-.++|+.+.... +-=|.++        +++...|.-...++.+ ..|..|..++.+++|.||-.|++-+|.++.-
T Consensus         3 ~d~d~~v~K~~I~~~~-~iy~~~~--------~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~   73 (239)
T PF11935_consen    3 NDEDPAVVKRAIQCST-SIYPLVF--------RWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV   73 (239)
T ss_dssp             T-SSHHHHHHHHHHHH-HHHHHHH--------HHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH-HHHHHHH--------HHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            5667777777776652 1111111        2233444556666666 6999999999999999999999999998853

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1ho8_A	480	Crystal Structure Of The Regulatory Subunit H Of Th		8e-06

>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The V-Type Atpase Of Saccharomyces Cerevisiae Length = 480

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 2   HKDPLFWHDNITNFEENDFQILRVLLTILDT---SSDPRA------LAVACFDLSQFIQY 52
           H D  FW DNI  F++++++I R L+ +L     + D  A      + VA  D++  ++ 
Sbjct: 376 HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL 435
Query: 53  HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
            P    ++     K  +M+L+NH ++ V   AL   Q + 
Sbjct: 436 LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	3e-34
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480

 Score =  121 bits (305), Expect = 3e-34
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTIL---------DTSSDPRALAVACFDLSQFIQ 51
            H D  FW DNI  F++++++I R L+ +L         +   +   + VA  D++  ++
Sbjct: 375 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE 434

Query: 52  YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91
             P    ++     K  +M+L+NH ++ V   AL   Q +
Sbjct: 435 LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 22  ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 81
            L  L+ +L +S + + L  A + LS         +  V +  A E++ +L +HEN ++ 
Sbjct: 181 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 239

Query: 82  KSALLCIQRLF 92
           K A   +++L 
Sbjct: 240 KEAQEALEKLQ 250

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 22  ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 81
            L  L+ +L  S + + L  A + LS         +  V +  A E++ +L +HEN ++ 
Sbjct: 139 ALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197

Query: 82  KSALLCIQRLF 92
           K A   +++L 
Sbjct: 198 KEAQEALEKLQ 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 15  FEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVT--------DLKAK 66
            +   ++    LL +L    + +A     F+LS         ++++T         L A 
Sbjct: 238 LKSKPYE--NCLL-VLLNVQNAKAWNA--FNLS--------CKILLTTRFKQVTDFLSAA 284

Query: 67  ERVMKLMNHENTEVTKSALLCIQRLFLGAK 96
                 ++H +  +T   +  +   +L  +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.79
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.67
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.67
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.6
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.51
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.39
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.32
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.23
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.1
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.03
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.91
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.81
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	96.67
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.63
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.62
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	96.51
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	96.49
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.38
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	96.35
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.34
3nmz_A	458	APC variant protein; protein-protein complex, arma	96.18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	95.85
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.77
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	95.66
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.96
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	94.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	94.67
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	93.22
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	93.18
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	93.05
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	92.28
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	92.18
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	91.99
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	91.93
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	91.83
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.82
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	91.82
3nmz_A	458	APC variant protein; protein-protein complex, arma	91.81
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	91.76
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.03
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	90.92
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	90.8
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	90.31
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	89.66
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	89.51
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	89.44
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	89.09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	88.71
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	88.61
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	88.51
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	88.37
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	87.27
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	87.19
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	86.83
2i9c_A	123	Hypothetical protein RPA1889; structural genomics,	85.18
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	85.07
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	84.58
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	83.91
2ibj_A	88	Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif	83.13
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	82.17
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	81.41

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=100.00  E-value=5.8e-45  Score=302.92  Aligned_cols=95  Identities=26%  Similarity=0.489  Sum_probs=92.6

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhcc---------CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILDT---------SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK   71 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~---------s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~   71 (103)
                      ||+||+||+||+.||+||||+++|+|++||++         |+||+++||||||||||||+||+||.+++++|||++||+
T Consensus       375 ~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~  454 (480)
T 1ho8_A          375 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME  454 (480)
T ss_dssp             GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred             CccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence            69999999999999999999999999999974         569999999999999999999999999999999999999


Q ss_pred             hhcCCCHHhHHHHHHHHHHHhcch
Q 034106           72 LMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        72 Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ||+|+||+||||||+|+||+|+++
T Consensus       455 Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          455 LLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.05  E-value=5e-06  Score=64.39  Aligned_cols=79  Identities=16%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             HHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHH
Q 034106            9 HDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCI   88 (103)
Q Consensus         9 ~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~av   88 (103)
                      .+|...+.+.  ..+..|+++|. +.++.+...|+..|+.+.. .|.++..+.+.|+...+++|+.|+|++|++.|..++
T Consensus       450 ~~~~~~l~~~--~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL  525 (529)
T 1jdh_A          450 VHNRIVIRGL--NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL  525 (529)
T ss_dssp             HHHHHHHHHT--TCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             chHHHHHhcc--CCccHHHHHHc-CCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence            4555555554  46789999995 5678888999999999885 588999999999999999999999999999999999


Q ss_pred             HHH
Q 034106           89 QRL   91 (103)
Q Consensus        89 Qkl   91 (103)
                      +.|
T Consensus       526 ~~l  528 (529)
T 1jdh_A          526 FRM  528 (529)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.79  E-value=4e-05  Score=52.90  Aligned_cols=71  Identities=25%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+.+++.++|++||.+|+.++..+-
T Consensus       138 ~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          138 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             THHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            47899999995 568888999999999999988999999999999999999999999999999999998874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.67  E-value=5.4e-05  Score=52.69  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+++++.++|++||.+|+.++..+....
T Consensus       170 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          170 GGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             THHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            47899999995 678888889999999999989999988988999999999999999999999999999998765

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.67  E-value=5.9e-05  Score=52.01  Aligned_cols=77  Identities=22%  Similarity=0.217  Sum_probs=65.6

Q ss_pred             ccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        18 ~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ........|..+| .++|+.+..-||.-|+.+.+..|..+..+-+.|+=..++++|.++|++|+.+|+.++..+..++
T Consensus         9 ~~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A            9 HHGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             ----CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            3445567888888 5778999999999999999999999988888899999999999999999999999999987544

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.60  E-value=8.9e-05  Score=62.83  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++|. +.++.+...|+.-|+.++ ..|.++..+.+.|+...+++|+.|+|++||+.|+.|+..+..+.
T Consensus       594 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          594 TIPLFVQLLY-SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             CHHHHHHGGG-CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHc-CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            5889999994 678888999999999987 45889999999999999999999999999999999999998765

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.51  E-value=5.1e-05  Score=53.60  Aligned_cols=71  Identities=25%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ..+..|+++|. +.|+.+..-||.=|+.++...|.++..+.+.|+-..+++++.++|++||.+|..++..+.
T Consensus       180 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          180 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             TCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             CCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            46889999995 558888899999999999999999999888999999999999999999999999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.39  E-value=0.00029  Score=48.93  Aligned_cols=73  Identities=22%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++|. +.|+.+..-||.=|+.+....|+.+..+-+.|+=..+++++.++|++|+.+|+.++..+..++
T Consensus         3 ~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~   75 (252)
T 4hxt_A            3 DVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP   75 (252)
T ss_dssp             HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            4678999994 566888889999999999999988888888899999999999999999999999999998763

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.32  E-value=0.00035  Score=49.24  Aligned_cols=74  Identities=22%  Similarity=0.277  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|. +.++.+..-||.=|+.+....|+.+..+-+.|+=..+++++.++|++|+..|+.++..+-.+.
T Consensus        54 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  127 (252)
T 4db8_A           54 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  127 (252)
T ss_dssp             THHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence            46788999995 556888888999999999989999999999999999999999999999999999999887654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.23  E-value=0.00044  Score=54.78  Aligned_cols=77  Identities=14%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106           19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL   93 (103)
Q Consensus        19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~   93 (103)
                      +...++.|+.+|..++++.++.-||--|+.+++..+.     ++.++.+.|+-..+++|+.++|++|+++|..+++.+-.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence            4578999999998888899999999999999875432     25677778999999999999999999999999998865


Q ss_pred             ch
Q 034106           94 GA   95 (103)
Q Consensus        94 ~~   95 (103)
                      +.
T Consensus       361 ~~  362 (457)
T 1xm9_A          361 HP  362 (457)
T ss_dssp             SG
T ss_pred             CH
Confidence            44

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.10  E-value=0.00081  Score=52.81  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ   89 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----------gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ   89 (103)
                      .++..|+++|. +.|+.+..+|+.=|+.+++..+.           ....+++.|+-+++..|+.|+|++|+..|...++
T Consensus       414 ~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~  492 (528)
T 4b8j_A          414 GCIKPLCDLLI-CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE  492 (528)
T ss_dssp             TCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            46888999995 57888899999999999988765           6778899999999999999999999999999999


Q ss_pred             HHhcc
Q 034106           90 RLFLG   94 (103)
Q Consensus        90 klm~~   94 (103)
                      ++...
T Consensus       493 ~~~~~  497 (528)
T 4b8j_A          493 AYWMD  497 (528)
T ss_dssp             HHCC-
T ss_pred             HHCCC
Confidence            98754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.08  E-value=0.00066  Score=55.34  Aligned_cols=73  Identities=16%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|. +.++.+...|+.-|+.+.+ .|+++..+.+.|+-..+.+|+.|+|++||..|..++..+..+.
T Consensus       457 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          457 NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             TCHHHHHHHTT-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            46788999994 5677788889988999886 4889999999999999999999999999999999999988655

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.08  E-value=0.00076  Score=51.75  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|+.+.++.+..-|+.=|+.+++.+|.+...+.+.||=..+..++.++|++|+.+|..++..+..++
T Consensus       124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~  198 (296)
T 1xqr_A          124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH  198 (296)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            468899999965557788889999999999999998877777899999999999999999999999999987653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.03  E-value=0.0018  Score=49.69  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+.+|. +.|+.+..-||.=|+.++...|+-+..+-+.|+=..+..||.++|++|+..|+.|+..++...
T Consensus       168 gi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          168 GFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            6788999995 578999999999999999999988888888899999999999999999999999999988664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.91  E-value=0.0018  Score=48.60  Aligned_cols=71  Identities=14%  Similarity=0.242  Sum_probs=61.3

Q ss_pred             HHHHHHHhccCCCc--ceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           23 LRVLLTILDTSSDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        23 lk~L~~lL~~s~d~--~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      +..|+++|. |.|+  .+..-|+--|..+....|.-|..+-+.|+=..+.+||.+++++|+.+|.-|+.-|-..
T Consensus        10 i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A           10 LERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             HHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            567899994 5566  6666777789999988888888888889999999999999999999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.81  E-value=0.002  Score=51.43  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++-.|+++|+.+++|.+..-||-=|+.++..-|+-+..+-+.|+=..+.+||.+++++||.+|+.|+..+-.++
T Consensus       101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B          101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            56789999976777777767888888888888888888888899999999999999999999999999988765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=96.67  E-value=0.002  Score=48.57  Aligned_cols=73  Identities=15%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      .++..|+++|. +.|+.+..-||.=||.++...|..+..+-+.|+=..+++++.+++++||.+|+.++..+...
T Consensus       234 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~  306 (450)
T 2jdq_A          234 GVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG  306 (450)
T ss_dssp             TTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            36888999994 66788888899999999988887777666679999999999999999999999999998853

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.63  E-value=0.0037  Score=49.29  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ   89 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----------gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ   89 (103)
                      .++..|+.+|. +.|+.+...|+.=|+.+++..|.           ....+.+.|+...+..|.+|+|++|+..|..++.
T Consensus       428 ~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~  506 (530)
T 1wa5_B          428 GCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE  506 (530)
T ss_dssp             TCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            47889999995 56888888899889999887764           3456788899999999999999999999999999


Q ss_pred             HHhcch
Q 034106           90 RLFLGA   95 (103)
Q Consensus        90 klm~~~   95 (103)
                      ++....
T Consensus       507 ~~~~~~  512 (530)
T 1wa5_B          507 TYFGEE  512 (530)
T ss_dssp             HHSSSC
T ss_pred             HHCCcc
Confidence            887543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.62  E-value=0.0034  Score=50.16  Aligned_cols=74  Identities=9%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++-.|+++|..++++.+..-||-=|+.++..-|+-+..+-+.|+-..+..|+.+++++|+.+|+.|+..+..++
T Consensus       120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~  193 (529)
T 3tpo_A          120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG  193 (529)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            56778888876667766666777788888888777777777899999999999999999999999999998765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=96.51  E-value=0.0046  Score=46.54  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++..|+++|..++|+.+..-||.=|+.+....|+....+-+-|+=..+.+++.++|++||.+|+.++..+....
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~  138 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS  138 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence            578888999965547777777888888888877766665556789999999999999999999999999988654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=96.49  E-value=0.0038  Score=49.34  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +..|+++|. |.|+.+..-|+--|+.+....|+-|..+-+.|+=..+.+++.+++++++.+|..|+..|-..+
T Consensus         4 l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~   75 (457)
T 1xm9_A            4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             HHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            567889994 668888888999999999888888867778899999999999999999999999999998763

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.44  E-value=0.0041  Score=49.65  Aligned_cols=74  Identities=24%  Similarity=0.380  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++..|+++| .+.|+.++.-||.=|+.+....++-...+..-|+-..+++|+.++++.|+..|+.|+..+..++
T Consensus       251 ~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  324 (529)
T 3tpo_A          251 QILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT  324 (529)
T ss_dssp             HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence            5677888888 5678888888999999998887777777778899999999999999999999999999987655

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.38  E-value=0.004  Score=48.01  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhcc
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~   94 (103)
                      -..+..|+++| .+.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+  ++++|+..|+.++..+..+
T Consensus       265 ~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          265 EGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            36788899999 56788889999999999999888899999899999999999976  3489999999999988754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=96.35  E-value=0.0056  Score=47.98  Aligned_cols=75  Identities=15%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++..|+++|..++++.+..-||.=|+.+....|+.+..+-+.|+=..++.++.+++++||.+|+.++..+....
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  191 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS  191 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence            467889999965555888888899999999988888888888899999999999999999999999999987554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.34  E-value=0.0047  Score=49.33  Aligned_cols=75  Identities=24%  Similarity=0.358  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..++..|+++| .+.|+.++.-||.=|+.+....++....+..-|+-.++++|+.++++.|+..|+.|+..+...+
T Consensus       231 ~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~  305 (510)
T 3ul1_B          231 EQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT  305 (510)
T ss_dssp             HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence            35677888888 5678888888999999998888888888888899999999999999999999999999887655

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=96.18  E-value=0.009  Score=48.60  Aligned_cols=73  Identities=18%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++|. +.+..+..-||-=|+.+....|+.+..+-+.|+=..+.+|+.+++++++.+|.-++.-|..++
T Consensus       380 ~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          380 CLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            4788999995 556667777888899998778899999989999999999999999999999999999999887

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.15  E-value=0.0069  Score=47.73  Aligned_cols=74  Identities=27%  Similarity=0.400  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++..|+++|. +.|+.+..-||.=|+.++...|..+..+-+.|+=..++++|.+++++|+..|+.++..+....
T Consensus       257 ~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~  330 (530)
T 1wa5_B          257 QALPTLAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  330 (530)
T ss_dssp             GGHHHHHHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence            56788889984 567888888999999999888877777777799999999999999999999999999887543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=95.85  E-value=0.015  Score=45.48  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|. +.++.+..-||-=|+.++...|+.+..+-+.|+=..+.+|+.++++++|.+|..++..|..++
T Consensus       263 g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          263 NCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             THHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            35889999995 556667777888888888778889999999999999999999999999999999999999776

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=95.77  E-value=0.009  Score=48.63  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC-C-HHhHHHHHHHHHHHhcc
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-N-TEVTKSALLCIQRLFLG   94 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~-d-~eVr~eAL~avQklm~~   94 (103)
                      -.++..|+++|. +.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+. + ++|+..|+.++..+..+
T Consensus       262 ~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~  337 (644)
T 2z6h_A          262 EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  337 (644)
T ss_dssp             HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence            367888999994 67888899999999999998888888888899999999999873 3 89999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=95.66  E-value=0.016  Score=48.78  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      +..|+++|. |.|+.+..-|+--|..++...+..|..+-+.|+=..+.+||.+++++|+.+|.-|+..|-.+
T Consensus        50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~  120 (584)
T 3l6x_A           50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG  120 (584)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence            678899994 66777777788889999988888899999999999999999999999999999999999874

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=94.96  E-value=0.077  Score=44.88  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL   93 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~   93 (103)
                      ..+..|+++|. +.++.+..-|+.=|+.++..+++.+..+.+.|+-..+.++|.+++++|+..|+.+++.+-.
T Consensus       234 g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~  305 (780)
T 2z6g_A          234 GGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  305 (780)
T ss_dssp             THHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            57889999994 5678888899999999999999999999888999999999999999999999999886664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=94.90  E-value=0.056  Score=40.36  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++| .|.++.+..-||-=|+-+....|+.|..+-+-||=..+.+|+. +++++++.+|.-++.-|-.+.
T Consensus        53 ~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~  126 (233)
T 3tt9_A           53 GILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND  126 (233)
T ss_dssp             HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred             CHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence            467899999 4678888889999999999888889999999999999999997 589999999988887776544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=94.67  E-value=0.07  Score=46.63  Aligned_cols=83  Identities=12%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             hHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106           11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ   89 (103)
Q Consensus        11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ   89 (103)
                      +..+|.+ +...++.|+.+|+ +.|+.+..-||-=|+.+....|. .+.+++.-|+-..+.+|+.++|++|+++|+.|+.
T Consensus       656 ~~~~~v~-~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~  733 (810)
T 3now_A          656 VIKMFEG-NNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL  733 (810)
T ss_dssp             HHHHHHS-SSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHh-ccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3444542 3468999999994 57888888899999999987774 5666664688889999999999999999999999


Q ss_pred             HHhcch
Q 034106           90 RLFLGA   95 (103)
Q Consensus        90 klm~~~   95 (103)
                      -+..++
T Consensus       734 NL~~~s  739 (810)
T 3now_A          734 NMINAG  739 (810)
T ss_dssp             HHHTTC
T ss_pred             HHHhCC
Confidence            988654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=93.22  E-value=0.21  Score=38.83  Aligned_cols=74  Identities=12%  Similarity=0.083  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhccCCCcc---eeehhcchhHHHHH---HccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           21 QILRVLLTILDTSSDPR---ALAVACFDLSQFIQ---YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~---~laVAc~Digefvr---~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      ..+..|+++|...++..   +..-||-=|..+..   -.|++|..+.+-|+=..+.+||.+++++++.+|.-|+..+-..
T Consensus       214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~  293 (354)
T 3nmw_A          214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  293 (354)
T ss_dssp             THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence            46788999996444331   33334444444444   4788999999999999999999999999999999999988743

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=93.18  E-value=0.096  Score=45.77  Aligned_cols=77  Identities=13%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchh
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK   96 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~   96 (103)
                      .+.+..|+++|....+.....-||-=|+.+...-+..+..+-+-|+=.++.+||.|+++.|+..|+.|+..++.+.+
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~  655 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED  655 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence            35789999999532232222346666777776666656555556899999999999999999999999999987764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.05  E-value=0.2  Score=41.05  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=54.1

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|..+| .++|+.+--+|+.=|+.+++.+|.   ++..  ....|+.++.++|+.||..||.++.++....
T Consensus       314 a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          314 AINILGRFL-LNNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             HHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence            456777777 457888888899999999998874   3433  5578999999999999999999998887543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=92.52  E-value=0.41  Score=35.13  Aligned_cols=71  Identities=11%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhh--ChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDL--KAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      .++..|...|+ +.+|.+-.-++.=|+.++...|.. ..+...+  ..=..++++|++++++||-.|..|+-.++
T Consensus       146 ~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          146 DMLKDILEHMK-HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            67788888884 457887777888889999888653 3333334  35578899999999999999988877765

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=92.28  E-value=0.29  Score=38.15  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             hHHH-HhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHH
Q 034106            6 LFWH-DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTK   82 (103)
Q Consensus         6 ~FW~-ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~   82 (103)
                      ++|+ --+..+-+.+-+.+-.|..+| ..+|+.+..=|..=|++.++..|.  .+.++++  .=++|.+++.++|+.|.-
T Consensus        17 ~sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval   93 (265)
T 3b2a_A           17 LSWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTI   93 (265)
T ss_dssp             HTTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHH
T ss_pred             HHhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHH
Confidence            3554 233334444556888999999 567888888899999999999874  5555666  458899999999999999


Q ss_pred             HHHHHHHHHhcch
Q 034106           83 SALLCIQRLFLGA   95 (103)
Q Consensus        83 eAL~avQklm~~~   95 (103)
                      .|++|+-.++.+.
T Consensus        94 ~A~r~L~~LLe~v  106 (265)
T 3b2a_A           94 KALRALGYLVKDV  106 (265)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999998765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=92.18  E-value=0.16  Score=41.29  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=49.0

Q ss_pred             HHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           24 RVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        24 k~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..|.++| .+.+|.+-.-||-=++.+.+.+|+   ++.+-+.-..+.++++++|+.|+..|+.++..+..++
T Consensus       124 ~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          124 EPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHc-CCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence            3366666 356777777777777888777776   3333345678888888889999999999988877554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=91.99  E-value=0.17  Score=34.62  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +-..+++++.++|++||..|+.++.++-
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~  109 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIG  109 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4466777778888888888888877764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=91.93  E-value=0.28  Score=36.59  Aligned_cols=70  Identities=10%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhccCC-CcceeehhcchhHHHHHHc-cch-hHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYH-PAG-RVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~-d~~~laVAc~Digefvr~~-p~g-r~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm   92 (103)
                      +++-.|++.+.+++ |+.+...|+.=++.+++.+ |.. ...+.  ..-..++.+++++  +++||+.|+.|+..++
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~  202 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            57778888885432 7777777888888888876 321 11112  2456678888888  8999999999998865

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=91.83  E-value=0.26  Score=33.46  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +-..+++++.++|+.||..|+.++..+-
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~  104 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIG  104 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            5667788888899999999999888764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=91.82  E-value=0.36  Score=34.15  Aligned_cols=71  Identities=11%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHc-cc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYH-PA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~-p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      .++..|...|+ +.+|.+-.-++.=|+.++..+ |.  +...+..  .=..++.++++++++||..|..|+..++..
T Consensus       133 ~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~--l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          133 AQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKL--LTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            45666667774 457777777788888877666 43  3444444  346788889999999999999999988743

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=91.82  E-value=0.2  Score=33.99  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +-..+.+++.++|+.||..|+.++..+-
T Consensus       108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A          108 AVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            5578888999999999999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=91.81  E-value=0.24  Score=40.18  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHH-ccchhHHHHhhChHHHHHhh-hcCCCHHhHHHHHHHHHHHhc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQY-HPAGRVIVTDLKAKERVMKL-MNHENTEVTKSALLCIQRLFL   93 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~-~p~gr~i~~~lg~K~~vM~L-m~h~d~eVr~eAL~avQklm~   93 (103)
                      ..+..|+++|. +.|+.+..-||-=|+.+... .+..|..+-+.|+=..++++ +.+++++++..|+.|+.-|-.
T Consensus       243 GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~  316 (458)
T 3nmz_A          243 GCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA  316 (458)
T ss_dssp             HHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence            35889999995 67888888888888877653 45678888888999999996 567899999999999988776

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=91.76  E-value=0.19  Score=34.44  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=18.3

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      +-..+.+++.++|++||..|+.++..+
T Consensus       113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A          113 AVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            445666667777777777777777665

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.03  E-value=0.14  Score=37.36  Aligned_cols=69  Identities=13%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch----hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG----RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g----r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      .++..|...+ ++.+|.+.+-++.=|+..++.++..    +..+..  +-..+..+++|+|++||-.|..++-.++
T Consensus       139 ~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          139 QSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             HHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3444444444 3567777777777788887776321    111111  1124556789999999999999886665

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=90.92  E-value=0.13  Score=41.81  Aligned_cols=69  Identities=22%  Similarity=0.342  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|++.|+...+|.+.++++.=||||....|+...+++.+      .+-+..++++||..+|.|+-|+....
T Consensus       427 ~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l------~~~~~~~~~~vr~~~l~a~~Kl~~~~  495 (591)
T 2vgl_B          427 SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF------LEGFHDESTQVQLTLLTAIVKLFLKK  495 (591)
T ss_dssp             TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH------STTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH------HHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            3456677777655677788888888899888887765555543      22344678999999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=90.80  E-value=0.55  Score=39.47  Aligned_cols=81  Identities=10%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhccCC-C------cceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHH
Q 034106           21 QILRVLLTILDTSS-D------PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRL   91 (103)
Q Consensus        21 ~llk~L~~lL~~s~-d------~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQkl   91 (103)
                      ..+..|+++|..++ +      ..+++=||.=|+.++---|.-+..+.+.|+=..+..|+.+.  .+.++..|-.+++-|
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI  474 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            57889999996543 2      24556688889999888888888888999999999999875  899999999999999


Q ss_pred             hcchhhhhhh
Q 034106           92 FLGAKYASFL  101 (103)
Q Consensus        92 m~~~~~~~~~  101 (103)
                      ..+++.-+.+
T Consensus       475 ~~~~elr~~~  484 (584)
T 3l6x_A          475 WGYKELRKPL  484 (584)
T ss_dssp             HTSHHHHHHH
T ss_pred             HcCHHHHHHH
Confidence            8777554433

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=90.31  E-value=0.35  Score=34.52  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=13.6

Q ss_pred             HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           67 ERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        67 ~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      ..+.+++.++|++||+.|..++..+
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~  186 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININ  186 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            3445555555555555555555444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=89.66  E-value=0.91  Score=31.99  Aligned_cols=71  Identities=10%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      .+++..|.++|.+..++.+..-||.=||.+++..+.. ...++.  .=..|++.+.++++.||..|..|+..++
T Consensus        55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~  126 (242)
T 2qk2_A           55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFKEKKPNVVTALREAIDAIY  126 (242)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4788889998853568888788899999988765321 011111  1233444445555555555555555554

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=89.51  E-value=0.39  Score=34.26  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +-..+..++.++|++||..|+.++..+-
T Consensus       193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            3456777788888888888888887764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=89.44  E-value=0.19  Score=32.62  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=15.5

Q ss_pred             HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           67 ERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        67 ~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      ..+.+++.++|+.||..|..++.++
T Consensus        76 ~~L~~~L~d~~~~VR~~A~~aL~~~  100 (131)
T 1te4_A           76 EPLIKLLEDDSGFVRSGAARSLEQI  100 (131)
T ss_dssp             HHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            4455556666666666666666554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=89.09  E-value=0.69  Score=33.87  Aligned_cols=74  Identities=11%  Similarity=0.089  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHcc-ch-h-HHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-AG-R-VIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p-~g-r-~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++++.|.+.|.+..++.+...||+=||++++... .+ . .....  .=..|++.+.+..+.|+-.|-.|+..++.+-
T Consensus        59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~  135 (249)
T 2qk1_A           59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYY  135 (249)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            68899999999555677888999999999998774 22 1 23322  2246778888889999999999998888654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=88.71  E-value=0.75  Score=35.41  Aligned_cols=68  Identities=12%  Similarity=0.122  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      +++..|.+++ ..+|+.+-.-|+.=+|.+++..|.. ....  ..-..++.++++++++||..|+.++..+.
T Consensus       164 ~l~~~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~--~l~~~l~~~~~d~~~~vr~~a~~~l~~l~  231 (588)
T 1b3u_A          164 ELRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLELD-NVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIA  231 (588)
T ss_dssp             HHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCHH-HHHH--THHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcHH-hHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            3445555555 3467777778888899998887532 1112  23345667778888888888888877765

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=88.61  E-value=0.17  Score=32.86  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=21.4

Q ss_pred             hHHHHHhhhcCCCHHhHHHHHHHHHH
Q 034106           65 AKERVMKLMNHENTEVTKSALLCIQR   90 (103)
Q Consensus        65 ~K~~vM~Lm~h~d~eVr~eAL~avQk   90 (103)
                      +-..+.+++.++|+.||..|..++.+
T Consensus       105 a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          105 VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            34567788899999999999998754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=88.51  E-value=0.69  Score=38.25  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcc
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~   94 (103)
                      ..+..|..+| .++|+.+--+|+.=|..++..+|. ...+..  ....++..+. ++|+.||..||..+.++...
T Consensus       329 ~~~~~L~~~L-~~~~~niry~aL~~l~~l~~~~~~-~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          329 RACNQLGQFL-QHRETNLRYLALESMCTLASSEFS-HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHHHHHHS-SCSCHHHHHHHHHHHHHHTTCTTT-HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhccCc-HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            3566777777 467888888999999999998875 234444  4678888888 99999999999999888744

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=88.37  E-value=0.67  Score=35.47  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=49.4

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ++..|.+-+ +|.++.+-+-.|.=|+.++..|.-.  -..-+....-|+.+++++|++||-.|+.|+-.+.
T Consensus       168 v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          168 MTPMLLDAL-KSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            555555555 5778888888889999999988533  1111112266999999999999999999986554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=87.27  E-value=0.8  Score=35.25  Aligned_cols=66  Identities=14%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      ++..|.+.|. ..++.+-..+|.=+|.+++..  |...+.. .....+.+|++.+|++||..|..|+..+
T Consensus       520 ~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~-~~~p~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          520 MLPTVLRMAG-DPVANVRFNVAKSLQKIGPIL--DNSTLQS-EVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             THHHHHHGGG-CSCHHHHHHHHHHHHHHGGGS--CHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhCC-CCCchHHHHHHHHHHHHHHHh--chhhhHH-HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            3334444442 344555555666666666655  3333321 2334455566777888888877777654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=87.19  E-value=0.5  Score=39.43  Aligned_cols=67  Identities=13%  Similarity=0.152  Sum_probs=52.5

Q ss_pred             HHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChH-HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           26 LLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAK-ERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        26 L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K-~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      |++.| .|.|+..-.-||.=|+.++. -|.-|..+.+-|+= ..|-.++.+++++||-+|.-|+.-|-..
T Consensus        39 ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           39 VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            44456 57888888899999999996 67777777776654 4566789999999999999888766543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=86.83  E-value=1.9  Score=32.05  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             hhhccHHHHH-HHHHHhccCCCcceeehhcchhHHHHHHc-cchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHH
Q 034106           15 FEENDFQILR-VLLTILDTSSDPRALAVACFDLSQFIQYH-PAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQR   90 (103)
Q Consensus        15 f~e~~~~llk-~L~~lL~~s~d~~~laVAc~Digefvr~~-p~gr~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQk   90 (103)
                      +.++..+.+| .|+..|. +.++.+ ..+|.=|+.++++. |++.  .  -+.=..+++.++++  |+++|..|+.++..
T Consensus        83 l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~--w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~  156 (462)
T 1ibr_B           83 IDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQ--W--PELIPQLVANVTNPNSTEHMKESTLEAIGY  156 (462)
T ss_dssp             SCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTC--C--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccc--c--HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            4334444444 4788884 456667 88888899999884 6431  1  13445667778888  99999999999999


Q ss_pred             Hhc
Q 034106           91 LFL   93 (103)
Q Consensus        91 lm~   93 (103)
                      +..
T Consensus       157 l~~  159 (462)
T 1ibr_B          157 ICQ  159 (462)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25

Probab=85.18  E-value=0.4  Score=33.37  Aligned_cols=48  Identities=19%  Similarity=0.186  Sum_probs=37.8

Q ss_pred             eeehhcchhHHHHHHccchhHHHHhh----C-hHHHHHhhhcCCCHHhHHHHH
Q 034106           38 ALAVACFDLSQFIQYHPAGRVIVTDL----K-AKERVMKLMNHENTEVTKSAL   85 (103)
Q Consensus        38 ~laVAc~Digefvr~~p~gr~i~~~l----g-~K~~vM~Lm~h~d~eVr~eAL   85 (103)
                      .-|+--.|.+.|-|+|-.=..+..+|    | +..-++.|++|||+.||..|=
T Consensus        26 ~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA   78 (123)
T 2i9c_A           26 DDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAA   78 (123)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHH
Confidence            35778899999999997655555554    4 666799999999999998763

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=85.07  E-value=1.3  Score=38.80  Aligned_cols=73  Identities=5%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHH---hHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE---VTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~e---Vr~eAL~avQklm~~~   95 (103)
                      .++..|+.++ +|.++.+..-|+-=|+.+... |.+|..+-+-||=..++.++.+..+.   +|..|..|+.++....
T Consensus       457 GvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          457 ELISFLKREM-HNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             THHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred             cCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence            4888899999 456778788888888888754 88999888889988899999877544   8999999999998543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=84.58  E-value=1.4  Score=35.99  Aligned_cols=56  Identities=21%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        33 s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +.||.+-+.|+.=||.+.     +..+++.  .-..|..++.|++|.||+.|..|+-++....
T Consensus       118 ~~n~~vr~lAL~~L~~i~-----~~~~~~~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          118 HSTQFVQGLALCTLGCMG-----SSEMCRD--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             CSSSHHHHHHHHHHHHHC-----CHHHHHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHhHHHHHHHHHHhcC-----CHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence            556666666666666664     2234443  3466788889999999999999998887543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=83.91  E-value=2.2  Score=34.59  Aligned_cols=72  Identities=6%  Similarity=0.079  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh--ChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL--KAKERVMKLMNHE--NTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l--g~K~~vM~Lm~h~--d~eVr~eAL~avQklm   92 (103)
                      +++..|++.+.+++|+.+...|+.=++.+++.++..-+++...  ..-..++..+.++  +++||..|+.|+..++
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~  209 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL  209 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence            5777777777433266666666666777776654211011110  1233456677887  8999999999998875

>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}

Probab=83.13  E-value=0.35  Score=30.84  Aligned_cols=43  Identities=19%  Similarity=0.453  Sum_probs=31.9

Q ss_pred             CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034106           34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE   76 (103)
Q Consensus        34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~   76 (103)
                      .++.+++|-  .+|+..|+..||.|..++....|+  +..+.-..|+
T Consensus        20 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs   66 (88)
T 2ibj_A           20 KDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS   66 (88)
T ss_dssp             TTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred             CCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence            455566664  789999999999999998887666  4555544565

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=82.17  E-value=2.7  Score=34.89  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ++++.|.+++ .+.|+.+..-||.=++.+++.+|.- +..++  +.-..++.++.++|++||.+|+.++..+.
T Consensus       215 ~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~  284 (852)
T 4fdd_A          215 SFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLA  284 (852)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            6788888887 4567888888999999999998731 11122  23455677889999999999998877765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=81.41  E-value=0.91  Score=37.75  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g--r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      -+++..|+..| .+.++.+-..||.=||.|....+..  ...+.  +.=..+++.|.+++++||..|..|+..+...
T Consensus       399 ~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          399 PELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            46778888888 4457788888999999988876431  11121  1234566677889999999999999988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1ho8a_	477	a.118.1.9 (A:) Regulatory subunit H of the V-type	1e-37

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 477

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 1e-37
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 1   MHKDPLFWHDNITNFEENDFQILRVLLTIL---------DTSSDPRALAVACFDLSQFIQ 51
            H D  FW DNI  F++++++I R L+ +L         +   +   + VA  D++  ++
Sbjct: 372 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE 431

Query: 52  YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91
             P    ++     K  +M+L+NH ++ V   AL   Q +
Sbjct: 432 LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 471

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.45
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.25
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.04
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.61
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.52
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.23
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.62
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	93.63
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.12
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	92.12
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	91.63
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	91.49
d1b3ua_	588	Constant regulatory domain of protein phosphatase	91.38
d1cxya_	81	Cytochrome b558 {Ectothiorhodospira vacuolata [Tax	88.24
d1soxa2	91	Sulfite oxidase, N-terminal domain {Chicken (Gallu	87.08
d1mj4a_	80	Sulfite oxidase, N-terminal domain {Human (Homo sa	86.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	86.13
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	84.73
d1euea_	86	Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101	84.71
d1cyoa_	88	Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}	83.89
d1kbia2	97	Flavocytochrome b2, N-terminal domain {Baker's yea	83.11
d2i9ca1	121	Hypothetical protein RPA1889 {Rhodopseudomonas pal	82.89
d1b3ua_	588	Constant regulatory domain of protein phosphatase	82.28

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-45  Score=305.21  Aligned_cols=95  Identities=26%  Similarity=0.489  Sum_probs=92.6

Q ss_pred             CCCChhHHHHhHHhhhhccHHHHHHHHHHhc---------cCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh
Q 034106            1 MHKDPLFWHDNITNFEENDFQILRVLLTILD---------TSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK   71 (103)
Q Consensus         1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~---------~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~   71 (103)
                      ||+||+||+||+.||+|+||+++|+|++||+         +|+||+++||||||||||||+||+||.+++++|+|++||+
T Consensus       372 ~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~  451 (477)
T d1ho8a_         372 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME  451 (477)
T ss_dssp             GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred             CcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence            6999999999999999999999999999996         3679999999999999999999999999999999999999


Q ss_pred             hhcCCCHHhHHHHHHHHHHHhcch
Q 034106           72 LMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        72 Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ||+|+||+||||||+|+||+|+||
T Consensus       452 Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         452 LLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.6e-06  Score=56.92  Aligned_cols=72  Identities=15%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +-.|+++| .|+||.+..-||.=||.++...++.|..+-+.||=..+.+||.|++++||..|+.|+..+..++
T Consensus         4 ip~lv~~L-~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~   75 (457)
T d1xm9a1           4 IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             HHHHHHHH-HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            56799999 5789999999999999999888999999999999999999999999999999999999998554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.3e-05  Score=52.62  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ..+..|+++|.++.++.+..-|+.-|+.++++.|.++..+-.-||=..++.++.++|++++..|+.++..+...+
T Consensus       101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~  175 (264)
T d1xqra1         101 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH  175 (264)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc
Confidence            468889999977778888888999999999999999999989899999999999999999999999999987654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00026  Score=49.66  Aligned_cols=73  Identities=14%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++| .+.|+.+..-+|.=|+.++...|..+..+.+.|+-..+..|++++|++++..|+.|+..+...+
T Consensus       145 gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         145 GFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            478888998 4678888888999999999999999999999999999999999999999999999999887655

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00026  Score=50.78  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++..|+++|..++++.+...||-=|+.++...|+.+..+-+-|+=..++.++.+++++++..|+.|+..+..++
T Consensus        57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~  130 (434)
T d1q1sc_          57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  130 (434)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc
Confidence            57789999976667777777887788888888888888888899999999999999999999999999998765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00051  Score=51.34  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      .++.|+++|. +.++.+...|+.=|+.+. +.|.++..+...|+-..+++|+.++|++||..|..|+.+|
T Consensus       461 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         461 TIPLFVQLLY-SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             CHHHHHHGGG-CSCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhC-CCCHHHHHHHHHHHHHHh-cChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            4667999995 567777777887788876 5688999999999999999999999999999999998765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00041  Score=49.72  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      .++..|++++ .+.++.+...|+.-|+.++...|+.+..+-+.|+-..+++++++++++|+.+|+.++..+..+.
T Consensus       230 ~~~~~Lv~ll-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         230 GVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  303 (434)
T ss_dssp             TCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             ccchhccccc-ccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence            3577888888 4567888888999999999988888888888899999999999999999999999999998654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0041  Score=46.23  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             hHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHH
Q 034106           11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQR   90 (103)
Q Consensus        11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk   90 (103)
                      +...+-+.+  .+..|+++| .+.|+.+...|+.=|+.++...|..|..+.+.|+=..+..++.+++++++..|..|+..
T Consensus        93 ~~~~i~~~g--~i~~Li~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  169 (529)
T d1jdha_          93 GLLAIFKSG--GIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHHHHTT--HHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHCC--CHHHHHHHh-CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHH
Confidence            344443332  588899999 46788888889999999999999999999999999999999999999999999999998


Q ss_pred             Hhcch
Q 034106           91 LFLGA   95 (103)
Q Consensus        91 lm~~~   95 (103)
                      +...+
T Consensus       170 l~~~~  174 (529)
T d1jdha_         170 LAYGN  174 (529)
T ss_dssp             HHTTC
T ss_pred             Hhhhh
Confidence            87554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0093  Score=44.01  Aligned_cols=73  Identities=26%  Similarity=0.397  Sum_probs=60.9

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++..|..+| .+.|+.++.-+|-=|+.++...++....+-+.|+=..++.++.+++++++..|+.++..+..++
T Consensus       247 ~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         247 ALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             GHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            566677777 4677777777777788888777777777777899999999999999999999999999988765

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0095  Score=40.89  Aligned_cols=73  Identities=14%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~   95 (103)
                      .+..|+++| +++++.+...||.=|+.++...|..|..+-+.|+-..++.++. +.+++++..|..++-.+....
T Consensus        45 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1          45 GICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             cHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence            367799999 4678888888888899999999999999988898888888875 579999999999998876543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0072  Score=44.65  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      ++..|+.+|. +.++.+..-|+.=||.++...+.-...+-..|+-..++.|+.+++++|+.+|+.++.-+..++
T Consensus       289 ~~~~l~~ll~-~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         289 IPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             CHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhhhhccc-CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            5677888884 567766667777788888877777777778899999999999999999999999999988765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.23  E-value=0.0049  Score=37.77  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             ccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106           18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ   89 (103)
Q Consensus        18 ~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ   89 (103)
                      .+.+.+..|+++|. ++|+.+-.-|+.=||++   .        .-++...+..+++++|++||..|+.+++
T Consensus        50 ~~~~~~~~L~~~l~-d~~~~VR~~a~~aL~~i---~--------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          50 QDERAVEPLIKLLE-DDSGFVRSGAARSLEQI---G--------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CSHHHHHHHHHHHH-HCCTHHHHHHHHHHHHH---C--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhhhHHHHHhhhc-cchhHHHHHHHHHHHHh---C--------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            33455555666663 34555544444444443   0        1124556677788888888888887764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.62  E-value=0.0079  Score=36.75  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=41.9

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL   91 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl   91 (103)
                      .+..|++.|+ +.|+.+-..|+.=||++-     +.      ++-..+.++++++|+.||+.|+.|+.++
T Consensus        23 ~~~~L~~~l~-d~~~~vR~~a~~~L~~~~-----~~------~~~~~L~~~l~d~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          23 AFEPLLESLS-NEDWRIRGAAAWIIGNFQ-----DE------RAVEPLIKLLEDDSGFVRSGAARSLEQI   80 (111)
T ss_dssp             THHHHHHGGG-CSCHHHHHHHHHHHGGGC-----SH------HHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHhcc-----hh------hhHHHHHhhhccchhHHHHHHHHHHHHh
Confidence            4566778884 567777666666666541     11      1335678899999999999999999876

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.037  Score=36.66  Aligned_cols=71  Identities=10%  Similarity=0.046  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106           19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA   95 (103)
Q Consensus        19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~   95 (103)
                      +-+.+..|+++|+ +.|+.+-..|+.-||.+....+....++.     ..+..+++++|++||..|+.++..+..+.
T Consensus        48 ~~~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~~~~~~~~~~~-----~l~~~~l~d~~~~vr~~a~~aL~~~~~~~  118 (276)
T d1oyza_          48 GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKN  118 (276)
T ss_dssp             CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTTHHHHHH-----HHHHHHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred             CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccccccchHH-----HHHHHHhcCCChhHHHHHHHHHHHHcccc
Confidence            3466777777773 56777777777777765333222222222     22444578899999999999998876443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.04  Score=38.33  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             HHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        25 ~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      .+.+.| .|+|+.+..-|+.=||.++... .+..+-..+ ..=..++.+++++++.||+.|+.|+.++.
T Consensus       369 ~i~~~l-~s~~~~~r~aal~~l~~i~~~~-~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         369 FIKEHI-KNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHT-TCSSHHHHHHHHHHHHHTSSSS-CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            333444 3456555444444456555322 111111111 23456888999999999999999999875

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.028  Score=45.08  Aligned_cols=61  Identities=28%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             cCCCcceeehhcchhHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           32 TSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        32 ~s~d~~~laVAc~Digefvr~~p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      +|.||..=--||+||......-..  -.....  ..-..++.+++++|++||-.|++|+..++..
T Consensus        13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~--~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~   75 (1207)
T d1u6gc_          13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSER--KVVKMILKLLEDKNGEVQNLAVKCLGPLVSK   75 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHhHHHHHHHHHHHHHhhcccccChHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            467888878899999987642211  111122  2456788999999999999999999988754

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.059  Score=35.65  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=42.9

Q ss_pred             HHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           24 RVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        24 k~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ..|+++|+ +.||.+-..|+.=||.+-     ..      .+-..++++++++|++||..|..++.++-
T Consensus        22 ~~L~~~L~-d~~~~vR~~A~~~L~~~~-----~~------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~   78 (276)
T d1oyza_          22 DELFRLLD-DHNSLKRISSARVLQLRG-----GQ------DAVRLAIEFCSDKNYIRRDIGAFILGQIK   78 (276)
T ss_dssp             HHHHHHTT-CSSHHHHHHHHHHHHHHC-----CH------HHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHhhC-----CH------hHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            45778884 778888888888777651     11      13356788999999999999999987654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.15  Score=37.74  Aligned_cols=67  Identities=13%  Similarity=0.103  Sum_probs=42.0

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF   92 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm   92 (103)
                      ++-.|.+++. ...|.+-..|+.=|+.+.+.++.. .+-..  .+..+=+|++++|++|||.|-.|++.|-
T Consensus       520 ilp~ll~~~~-D~v~nVR~~a~~~l~~i~~~~~~~-~~~~~--i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         520 MLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNS-TLQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             THHHHHHGGG-CSCHHHHHHHHHHHHHHGGGSCHH-HHHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHcCcH-hHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            3344444442 234445555666677776666432 22222  4566667889999999999999998864

>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b558
species: Ectothiorhodospira vacuolata [TaxId: 1054]

Probab=88.24  E-value=0.061  Score=32.56  Aligned_cols=33  Identities=12%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             hcchhHHHHHHccchhHHHHhhChH--HHHHhhhc
Q 034106           42 ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMN   74 (103)
Q Consensus        42 Ac~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~   74 (103)
                      -.+|+..|+..||.|..+|....||  +..++-..
T Consensus        26 ~VYDvT~f~~~HPGG~~~l~~~aGkD~t~~F~~~~   60 (81)
T d1cxya_          26 KVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKS   60 (81)
T ss_dssp             EEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTT
T ss_pred             EEEeccceeecCCCcHHHHHHHcCCcchHHHHhcC
Confidence            4789999999999999999998888  56665543

>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.08  E-value=0.039  Score=34.20  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             Ccceeeh--hcchhHHHHHHccchhHHHHhhChH--HHHHhhh
Q 034106           35 DPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLM   73 (103)
Q Consensus        35 d~~~laV--Ac~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm   73 (103)
                      |..+++|  -.+|+..|+..||.|..+|....||  +..+..-
T Consensus        18 ~~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~~   60 (91)
T d1soxa2          18 ERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY   60 (91)
T ss_dssp             TEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHHHHHHS
T ss_pred             CceEEEECCEEEeccceecccCCcHHHHHHHcCCcccHhHhhc
Confidence            3334444  3899999999999999999888776  5555543

>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=0.12  Score=31.03  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=24.5

Q ss_pred             cchhHHHHHHccchhHHHHhhChH--HHHHhh
Q 034106           43 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKL   72 (103)
Q Consensus        43 c~Digefvr~~p~gr~i~~~lg~K--~~vM~L   72 (103)
                      .+|+..|+..||.|..+|....||  +..+..
T Consensus        28 VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~   59 (80)
T d1mj4a_          28 VFDVTEFVDLHPGGPSKLMLAAGGPLEPFWAL   59 (80)
T ss_dssp             EEECTTTGGGSTTCHHHHHTTTTSBSHHHHTT
T ss_pred             EEeeeeeHhhcCChhHHHHHHcCCCcchhhhc
Confidence            789999999999999999887666  445543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.69  Score=36.19  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106           20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG   94 (103)
Q Consensus        20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g--r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~   94 (103)
                      -+++..|+..| .+.+|.+-..||.=||+|....+..  ...+.  ..=..++..+.++++.|+..|..|+..+.-+
T Consensus       435 ~~li~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~  508 (888)
T d1qbkb_         435 PELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEE  508 (888)
T ss_dssp             HHHHHHHHHHT-TSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTT--THHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            35667777777 4568888889999999988766431  11111  2334466677889999999999999988743

>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.71  E-value=0.077  Score=32.53  Aligned_cols=34  Identities=21%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             hcchhHHHHHHccchhHHHHhhChH--HHHHhhhcC
Q 034106           42 ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNH   75 (103)
Q Consensus        42 Ac~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h   75 (103)
                      -.+||..|++.||.|..+|....||  +..|.-..|
T Consensus        28 ~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~f~~~hh   63 (86)
T d1euea_          28 RVYDITRFLSEHPGGEEILLEQAGADATESFEDIGH   63 (86)
T ss_dssp             EEEECGGGGGGCTTCSHHHHTTTTSBCHHHHHHHTC
T ss_pred             EEEecceeeeccCcchHHHHHHCCcCHHHHHHHhCC
Confidence            3689999999999999999887665  334444444

>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.89  E-value=0.061  Score=33.16  Aligned_cols=35  Identities=20%  Similarity=0.545  Sum_probs=26.5

Q ss_pred             hcchhHHHHHHccchhHHHHhhChHH--HHHhhhcCC
Q 034106           42 ACFDLSQFIQYHPAGRVIVTDLKAKE--RVMKLMNHE   76 (103)
Q Consensus        42 Ac~Digefvr~~p~gr~i~~~lg~K~--~vM~Lm~h~   76 (103)
                      -.+|+..|++.||.|..+|....||+  ..|.-..|+
T Consensus        28 ~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs   64 (88)
T d1cyoa_          28 KVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS   64 (88)
T ss_dssp             EEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred             EEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCC
Confidence            57899999999999999998877663  345444443

>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Flavocytochrome b2, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.11  E-value=0.094  Score=32.92  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=21.7

Q ss_pred             hcchhHHHHHHccchhHHHHhhChH
Q 034106           42 ACFDLSQFIQYHPAGRVIVTDLKAK   66 (103)
Q Consensus        42 Ac~Digefvr~~p~gr~i~~~lg~K   66 (103)
                      -.+|+..|+..||.|..+|....||
T Consensus        32 ~VYDvT~f~~~HPGG~~~i~~~aG~   56 (97)
T d1kbia2          32 YVYDLTRFLPNHPGGQDVIKFNAGK   56 (97)
T ss_dssp             EEEECTTTGGGCTTCHHHHHTTTTS
T ss_pred             EEEecchhhhhCCChHHHHHHHcCc
Confidence            3689999999999999999887665

>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: RPA1889-like
domain: Hypothetical protein RPA1889
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.89  E-value=0.35  Score=31.92  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh-----ChHHHHHhhhcCCCHHhHHHH
Q 034106           21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-----KAKERVMKLMNHENTEVTKSA   84 (103)
Q Consensus        21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l-----g~K~~vM~Lm~h~d~eVr~eA   84 (103)
                      +++...+++-.    ...-|+--.|.+.|=|+|-.=..+.+++     ++.+.++.|++|||+.||..|
T Consensus        11 ~Lv~~F~~~~i----~q~~A~~~~d~~~~NR~~~kl~~~~~eLk~~~g~~R~aLl~Ll~h~n~~VRl~A   75 (121)
T d2i9ca1          11 DLVALFAKVTV----EQDDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQA   75 (121)
T ss_dssp             HHHHHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHCCCHHHHHHH
Confidence            45555555431    1334777889999999997766777665     348889999999999999765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=1.2  Score=32.66  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106           22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL   93 (103)
Q Consensus        22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~   93 (103)
                      ++..+.+++ .+.+|.+-..||.-+|++++..+.  ..... ..-..+.++++++++.||..|+.++..+..
T Consensus       165 l~~~~~~l~-~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~  232 (588)
T d1b3ua_         165 LRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLEL--DNVKS-EIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCH--HHHHH-THHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhcH--HHHHH-HHHHHHHHHhcCCchhhHHHHHHHHHHhhc
Confidence            444555555 456777778888889999887742  22211 223557777888899999888888877653