Citrus Sinensis ID: 034146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccEEcccccc
Coil and Loop (DISEMBL)
masschrfirrssLSSIKSAFrsnapksptaasapfplptksspsplrrfslsrspselgcaqsllpLHSVVAAARMTSCLSAASKSCRalsqgtlcctspgl
Flexible Loop (DISEMBL)
masschrfirrsslssiKSAFRSNAPksptaasapfplptksspsPLRRFSLSRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRalsqgtlcctspgl
Low Complexity Region (SEG)
MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKsspsplrrfslsrspselGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL
Disordered region (IsUnstruct)
************************************************************CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCC*****
Disordered Region (DISOPRED)
*****************************************************RSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSP**
Disordered Region (DISEMBL)
**********RSSLSSIKSA*************APFPLPTKSSPSPLRRFSLSRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL
Disordered Region (DISPRO)
************************************************RFSLSRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALS****CC*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
296090673	108	unnamed protein product [Vitis vinifera]	1.0	0.953	0.675	6e-30
359495978	108	PREDICTED: uncharacterized protein LOC10	1.0	0.953	0.666	5e-29
359496854	100	PREDICTED: uncharacterized protein LOC10	0.922	0.95	0.66	3e-26
359496852	106	PREDICTED: uncharacterized protein LOC10	0.902	0.877	0.653	9e-25
89257519	108	hypothetical protein 26.t00030 [Brassica	0.980	0.935	0.618	2e-24
15236039	99	uncharacterized protein [Arabidopsis tha	0.961	1.0	0.621	5e-24
89257489	109	hypothetical protein 25.t00029 [Brassica	0.980	0.926	0.639	7e-24
297800380	99	hypothetical protein ARALYDRAFT_493145 [	0.961	1.0	0.621	9e-24
110737987	99	hypothetical protein [Arabidopsis thalia	0.961	1.0	0.611	1e-23
449458954	101	PREDICTED: uncharacterized protein LOC10	0.980	1.0	0.572	6e-20

>gi|296090673|emb|CBI41073.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 88/108 (81%), Gaps = 5/108 (4%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNA-----PKSPTAASAPFPLPTKSSPSPLRRFSLSRS 55
           MASSC+RF+ R+SLS++KSA R+N       +S T  S+PFPLP++S+ SPLRRFS SR+
Sbjct: 1   MASSCNRFVSRASLSAVKSAIRANGRTASVNRSATPTSSPFPLPSRSTVSPLRRFSSSRT 60

Query: 56  PSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
             ELGC QSLLPLHS VAAARMTSCLS+ S+SC+ALSQGTLC TSPGL
Sbjct: 61  RGELGCIQSLLPLHSAVAAARMTSCLSSTSRSCKALSQGTLCRTSPGL 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495978|ref|XP_003635125.1| PREDICTED: uncharacterized protein LOC100248900 isoform 2 [Vitis vinifera] gi|359495980|ref|XP_002272938.2| PREDICTED: uncharacterized protein LOC100248900 isoform 1 [Vitis vinifera] gi|297744382|emb|CBI37356.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 87/108 (80%), Gaps = 5/108 (4%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNA-----PKSPTAASAPFPLPTKSSPSPLRRFSLSRS 55
           MASSC+RF+ R+SLS++KSA R+N       +S T  S+PFPLP++S+ SPLRRFS SR+
Sbjct: 1   MASSCNRFVSRASLSAVKSAIRANGRTASVNRSATPTSSPFPLPSRSTVSPLRRFSSSRT 60

Query: 56  PSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
              LGC QSLLPLHS VAAARMTSCLS+ S+SC+ALSQGTLC TSPGL
Sbjct: 61  RGVLGCIQSLLPLHSAVAAARMTSCLSSTSRSCKALSQGTLCRTSPGL 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496854|ref|XP_003635356.1| PREDICTED: uncharacterized protein LOC100854766 isoform 2 [Vitis vinifera]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%), Gaps = 5/100 (5%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNA-----PKSPTAASAPFPLPTKSSPSPLRRFSLSRS 55
           MASSC+RF+ R+SLS++KSA R+N       +S T  S+PFPLP++S+ SPLRRFS SR+
Sbjct: 1   MASSCNRFVSRASLSAVKSAIRANGRTASVNRSATPTSSPFPLPSRSTVSPLRRFSSSRT 60

Query: 56  PSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGT 95
             ELGC QSLLPLHS VAAARMTSCLS+ S+SC+ALSQGT
Sbjct: 61  RGELGCIQSLLPLHSAVAAARMTSCLSSTSRSCKALSQGT 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496852|ref|XP_003635355.1| PREDICTED: uncharacterized protein LOC100854766 isoform 1 [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 5/98 (5%)

Query: 1  MASSCHRFIRRSSLSSIKSAFRSNA-----PKSPTAASAPFPLPTKSSPSPLRRFSLSRS 55
          MASSC+RF+ R+SLS++KSA R+N       +S T  S+PFPLP++S+ SPLRRFS SR+
Sbjct: 1  MASSCNRFVSRASLSAVKSAIRANGRTASVNRSATPTSSPFPLPSRSTVSPLRRFSSSRT 60

Query: 56 PSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQ 93
            ELGC QSLLPLHS VAAARMTSCLS+ S+SC+ALSQ
Sbjct: 61 RGELGCIQSLLPLHSAVAAARMTSCLSSTSRSCKALSQ 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257519|gb|ABD65009.1| hypothetical protein 26.t00030 [Brassica oleracea]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 82/110 (74%), Gaps = 9/110 (8%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAP-------FPLPTKSSPSPLRRFSLS 53
           MAS+C+RF+ RSS+SS++SA RS+  KSP    +        F +P+K + SP  RFS S
Sbjct: 1   MASACNRFMNRSSVSSLRSAIRSSLHKSPIGTGSSPSASSAGFRIPSKPAASP--RFSFS 58

Query: 54  RSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           R PSELGCAQSLLPLHS VAAAR+TSCLS  S++ RALSQGTLCCTSP L
Sbjct: 59  RCPSELGCAQSLLPLHSTVAAARLTSCLSVTSRNSRALSQGTLCCTSPDL 108

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236039|ref|NP_193463.1| uncharacterized protein [Arabidopsis thaliana] gi|15292857|gb|AAK92799.1| unknown protein [Arabidopsis thaliana] gi|37202058|gb|AAQ89644.1| At4g17310 [Arabidopsis thaliana] gi|51969176|dbj|BAD43280.1| hypothetical protein [Arabidopsis thaliana] gi|332658475|gb|AEE83875.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 75/103 (72%), Gaps = 4/103 (3%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELG 60
           MAS+C +   R+S+SS+KS  RS    +  A+SA F LP++    P R FS SR PSELG
Sbjct: 1   MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQ----PTRHFSFSRCPSELG 56

Query: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           C QSLLPLHS VAAAR+TSCLS  S+S RALSQGTLCCTSP L
Sbjct: 57  CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTSPDL 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257489|gb|ABD64980.1| hypothetical protein 25.t00029 [Brassica oleracea]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 84/111 (75%), Gaps = 10/111 (9%)

Query: 1   MASSC-HRFIRRSSLSSIKSAFRSNAPKSP-------TAASAPFPLPTKSSPSPLRRFSL 52
           MAS+C +RF+ RSS+SS++SA RS   KSP       +A+SA F +P+K + SP  RFS 
Sbjct: 1   MASACCNRFMNRSSVSSLRSAIRSALHKSPVGTGTPPSASSAGFRIPSKPAASP--RFSF 58

Query: 53  SRSPSELGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           SR PSELGC QSLLPLHS VAAAR+TSCLS  S+S RALSQGTLCCTSP L
Sbjct: 59  SRCPSELGCVQSLLPLHSTVAAARLTSCLSVTSRSSRALSQGTLCCTSPDL 109

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800380|ref|XP_002868074.1| hypothetical protein ARALYDRAFT_493145 [Arabidopsis lyrata subsp. lyrata] gi|297313910|gb|EFH44333.1| hypothetical protein ARALYDRAFT_493145 [Arabidopsis lyrata subsp. lyrata]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELG 60
           MAS+C +   R+S+SS+KS+ RS    +P A+SA F LP++    P R FS SR PSELG
Sbjct: 1   MASACRKLFNRASVSSLKSSLRSTTGSAPAASSARFRLPSQ----PSRHFSFSRCPSELG 56

Query: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           C QSLLPLHS VAAAR+TSCLS  S+S RALSQGTLCCT P L
Sbjct: 57  CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTCPDL 99

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737987|dbj|BAF00929.1| hypothetical protein [Arabidopsis thaliana]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 75/103 (72%), Gaps = 4/103 (3%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELG 60
           MAS+C +   R+S+SS+KS  RS    +  A+SA F LP++    P R FS SR PSELG
Sbjct: 1   MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQ----PTRHFSFSRCPSELG 56

Query: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           C QSLLPLHS VAAAR++SCLS  S+S RALSQGTLCCTSP L
Sbjct: 57  CVQSLLPLHSTVAAARLSSCLSTTSRSSRALSQGTLCCTSPDL 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458954|ref|XP_004147211.1| PREDICTED: uncharacterized protein LOC101221008 isoform 1 [Cucumis sativus] gi|449458956|ref|XP_004147212.1| PREDICTED: uncharacterized protein LOC101221008 isoform 2 [Cucumis sativus] gi|449458958|ref|XP_004147213.1| PREDICTED: uncharacterized protein LOC101221008 isoform 3 [Cucumis sativus] gi|449504954|ref|XP_004162339.1| PREDICTED: uncharacterized LOC101221008 isoform 1 [Cucumis sativus] gi|449504958|ref|XP_004162340.1| PREDICTED: uncharacterized LOC101221008 isoform 2 [Cucumis sativus] gi|449504962|ref|XP_004162341.1| PREDICTED: uncharacterized LOC101221008 isoform 3 [Cucumis sativus]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELG 60
           MAS+C R   R S SS ++  R+N+    +++  P      ++PS +RRFSL+RSPSELG
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFP-LPSKSTAPS-VRRFSLARSPSELG 58

Query: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
           C QSLLP H  VA ARM SCLS  S+SCRALSQG LCCTSPGL
Sbjct: 59  CVQSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2130819	99	AT4G17310 [Arabidopsis thalian	0.961	1.0	0.524	3e-21
TAIR|locus:505006678	116	AT5G47455 "AT5G47455" [Arabido	0.864	0.767	0.520	2.6e-15
TAIR|locus:2181925	93	NOXY2 "AT5G11630" [Arabidopsis	0.893	0.989	0.375	2.2e-09
TAIR|locus:2055787	101	AT2G15000 "AT2G15000" [Arabido	0.786	0.801	0.317	0.00017
TAIR|locus:2136363	96	AT4G39300 "AT4G39300" [Arabido	0.844	0.906	0.306	0.00021
TAIR|locus:4010713552	103	AT1G55205 "AT1G55205" [Arabido	0.883	0.883	0.315	0.00027
TAIR|locus:2091596	95	AT3G13674 "AT3G13674" [Arabido	0.873	0.947	0.297	0.00073
TAIR|locus:505006558	94	AT4G34265 "AT4G34265" [Arabido	0.339	0.372	0.514	0.00093

TAIR|locus:2130819 AT4G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/103 (52%), Positives = 65/103 (63%)

Query:     1 MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKXXXXXXXXXXXXXXXXXXG 60
             MAS+C +   R+S+SS+KS  RS    +  A+SA F LP++                  G
Sbjct:     1 MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSEL----G 56

Query:    61 CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
             C QSLLPLHS VAAAR+TSCLS  S+S RALSQGTLCCTSP L
Sbjct:    57 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTSPDL 99

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:505006678 AT5G47455 "AT5G47455" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 51/98 (52%), Positives = 59/98 (60%)

Query:     7 RFIRRSSLSSIKSAFRS---NAP----KSPTAAS-APFPLPTKXXXXXXXXXXXXXXXXX 58
             RF+ RSS+SS KSA RS   N+P     SP AAS A F +P+K                 
Sbjct:     4 RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query:    59 XGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQ-GT 95
              GC QSLLPLHS VAAAR+TSCLS  S+S RAL+Q GT
Sbjct:    64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQDGT 101

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181925 NOXY2 "AT5G11630" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 39/104 (37%), Positives = 56/104 (53%)

Query:     1 MASSCHRFIRRSSLSSIKSAFRSNAPK-SPTAASAPFPLPTKXXXXXXXXXXXXXXXXXX 59
             MAS C R + + + S+ +SA   N P   P +AS+   +P                    
Sbjct:     1 MASRC-RSLSKPAFSAFRSAM--NKPSIRPKSASSFIGVPPSPGFSRPIGQL-------- 49

Query:    60 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103
             G  QSLLPL+S VA+AR+TSCL   S++ R+L+QG LC  +PG+
Sbjct:    50 GSLQSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

GO:0003674 "molecular_function" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0071433 "cell wall repair" evidence=IMP

TAIR|locus:2055787 AT2G15000 "AT2G15000" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 26/82 (31%), Positives = 38/82 (46%)

Query:    15 SSIKSAFRSNAPKSPTAASAPF-PLPTKXXXXXXXXXXXXXXXXXXGCAQSLLPLHSVVA 73
             S + +  RS + +SPT A     P  +                   GC QS LPL+SVVA
Sbjct:    12 SFVSATARSPSLRSPTTALPRLRPPQSSLPSRRFTFSSPSRNLGALGCTQSFLPLYSVVA 71

Query:    74 AARMTSCLSAASKSCRALSQGT 95
              +++TS L+   ++   LS GT
Sbjct:    72 TSQLTSHLNVNLRAFCELSNGT 93

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2136363 AT4G39300 "AT4G39300" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 30/98 (30%), Positives = 43/98 (43%)

Query:     1 MASSCHRFIRRSSLSSIKSAFRSNAPKS----PTAASAPFPLPTKXXXXXXXXXXXXXXX 56
             MAS C   +   S + + S  R+   KS    PT  S+PF                    
Sbjct:     1 MASFCRSALMAGSRNLV-SRSRTVTQKSLNLKPTTTSSPF------ASMSQSIPRASRVL 53

Query:    57 XXXGCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQG 94
                G  ++++PLHS VA+AR+ S ++A S     LSQG
Sbjct:    54 SALGSVETMIPLHSAVASARLRSSIAADSSCWSLLSQG 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713552 AT1G55205 "AT1G55205" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 30/95 (31%), Positives = 42/95 (44%)

Query:     1 MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKXXXXXXXXXXXXXXX-XXX 59
             MASS  +  R SS   I S  +  +  +   +S P P+ +                    
Sbjct:     1 MASSS-KICRLSS--KIHSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPVEL 57

Query:    60 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQG 94
              C  S+LPLHS +A+AR+ S LS  SKS   + QG
Sbjct:    58 SCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091596 AT3G13674 "AT3G13674" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 28/94 (29%), Positives = 45/94 (47%)

Query:     1 MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKXXXXXXXXXXXXXXXXXXG 60
             MASS  R + R S S +KS  ++ + K+   +S P P+ +                    
Sbjct:     1 MASS--RVLGRFS-SRLKSLCQNLSNKNANVSSLPSPIKSASPSSATSCRLNRSSRLPVE 57

Query:    61 CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQG 94
              + S++PLHS +A++R+ S LS  SK    + QG
Sbjct:    58 LS-SMIPLHSAIASSRLVSSLSVESKIWGLVPQG 90

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:505006558 AT4G34265 "AT4G34265" [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query:    60 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQG 94
             GC +S LPL++VVAAAR+TS L+   ++   LS G
Sbjct:    55 GCTESFLPLYNVVAAARLTSHLNVNLRAFCELSNG 89


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.123   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103        85   0.00091  102 3  11 22  0.39    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  400 (43 KB)
  Total size of DFA:  80 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.29u 0.21s 9.50t   Elapsed:  00:00:01
  Total cpu time:  9.29u 0.21s 9.50t   Elapsed:  00:00:01
  Start:  Fri May 10 16:06:53 2013   End:  Fri May 10 16:06:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00