Citrus Sinensis ID: 034235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEEcccccccEEcccccEEEEEEEccccccHHHHHHHHHHHHHcccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEcccccccccccccHHHcEEEEcccccccHHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpscirlvppssvsitihakpgskscsitdvsdeavgvqidapakdgEANAALLEYMSSLIHVsvgefvesvf
Flexible Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpsciRLVPPSSVSITihakpgskscsiTDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Low Complexity Region (SEG)
MAPakkgkskaksagsTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Disordered region (IsUnstruct)
*******************************IRL****************************VGVQI********ANAALLEYMSSLIHVSVGEFV****
Disordered Region (DISOPRED)
********************************RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Disordered Region (DISEMBL)
**********************TNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Disordered Region (DISPRO)
**************************NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q3ZBP8	126	UPF0235 protein C15orf40	yes	no	0.87	0.690	0.428	4e-10
Q9CRC3	126	UPF0235 protein C15orf40	yes	no	0.86	0.682	0.423	6e-10
Q505I4	126	UPF0235 protein C15orf40	no	no	0.89	0.706	0.393	1e-09
Q8WUR7	126	UPF0235 protein C15orf40	no	no	0.85	0.674	0.411	1e-09
A1KB74	98	UPF0235 protein azo3464 O	yes	no	0.59	0.602	0.305	0.0002
C1D6C4	97	UPF0235 protein LHK_03181	yes	no	0.53	0.546	0.320	0.0005
B8F6W0	97	UPF0235 protein HAPS_1504	yes	no	0.54	0.556	0.351	0.0009

>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGV 65
          K  A + G  QSK    +  LP    + + P   VSI IHAKPGSK  ++TDV+ EAV V
Sbjct: 4  KCGATNKGKNQSK--EPERPLPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSV 61

Query: 66 QIDAPAKDGEANAALLEYMSSLIHVSVGEFV 96
           I AP  +GEANA L  Y+S ++ +   + V
Sbjct: 62 AIAAPPTEGEANAELCRYLSKVLELRKSDVV 92

Bos taurus (taxid: 9913)

>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSCIRLV---PPSSVSITIHAKPGSKSCSITDVSDEAVG 64
          K+ A S G  Q+K     E  P     V   P   V+I IHAKPGS+  ++TD+S EAVG
Sbjct: 4  KAGATSKGKNQTK---EPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVG 60

Query: 65 VQIDAPAKDGEANAALLEYMSSLIHVSVGEFV 96
          V I AP  +GEANA L  Y+S ++ +   + V
Sbjct: 61 VAIAAPPSEGEANAELCRYLSKVLDLRKSDVV 92

Mus musculus (taxid: 10090)

>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQI 67
          K+ A S G  Q+K           +       V+I IHAKPGSK  ++TD++ EAVGV I
Sbjct: 4  KAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAI 63

Query: 68 DAPAKDGEANAALLEYMSSLIHVSVGEFV 96
           AP  +GEANA L  Y+S ++ +   + V
Sbjct: 64 AAPPSEGEANAELCRYLSKVLDLRKSDVV 92

Rattus norvegicus (taxid: 10116)

>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 12 KSAGST---QSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQ 66
          K AG+T   +S+ K  +  LP    + + P   V+I IHAKPGSK  ++TD++ EAV V 
Sbjct: 3  KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVA 62

Query: 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFV 96
          I AP  +GEANA L  Y+S ++ +   + V
Sbjct: 63 IAAPPSEGEANAELCRYLSKVLELRKSDVV 92

Homo sapiens (taxid: 9606)

>sp|A1KB74|Y3464_AZOSB UPF0235 protein azo3464 OS=Azoarcus sp. (strain BH72) GN=azo3464 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 32 IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          +R     S+++T+H +PG++      +  EA+ +++ AP  DG+ANAAL  +++    V
Sbjct: 5  VREAADGSLTLTLHIQPGARQTGFAGLHGEAMKIRLAAPPVDGKANAALCAFLADFCEV 63

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|C1D6C4|Y3181_LARHH UPF0235 protein LHK_03181 OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_03181 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 34/53 (64%)

Query: 39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVS 91
           V +T+H +PG++   +  +  +A+ +++ AP  DG+ANA LL +++  + VS
Sbjct: 10 GVRLTLHVQPGARRTEVAGLHGDALKIRLAAPPVDGKANACLLAFLARGLGVS 62

Laribacter hongkongensis (strain HLHK9) (taxid: 557598)

>sp|B8F6W0|Y1504_HAEPS UPF0235 protein HAPS_1504 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=HAPS_1504 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 37 PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          P  + + I  +P +    I  + D  + + I AP  DG+ANA LL+Y+S L  V
Sbjct: 10 PQGIRLRIFLQPKASRDQIVGLHDNELKIAITAPPIDGQANAHLLKYLSKLFKV 63

Haemophilus parasuis serovar 5 (strain SH0165) (taxid: 557723)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
225431557	128	PREDICTED: UPF0235 protein C15orf40 homo	0.89	0.695	0.733	4e-29
30694498	126	uncharacterized protein [Arabidopsis tha	0.87	0.690	0.711	6e-27
351726281	126	uncharacterized protein LOC100527290 [Gl	0.87	0.690	0.711	1e-26
351722711	126	uncharacterized protein LOC100499954 [Gl	0.87	0.690	0.711	2e-26
7770327	91	F27J15.6 [Arabidopsis thaliana]	0.84	0.923	0.724	4e-26
449467753	156	PREDICTED: UPF0235 protein C15orf40 homo	0.88	0.564	0.703	9e-26
297852564	126	hypothetical protein ARALYDRAFT_474060 [	0.87	0.690	0.688	3e-25
224131202	131	predicted protein [Populus trichocarpa]	0.75	0.572	0.766	1e-23
357464555	125	hypothetical protein MTR_3g095670 [Medic	0.64	0.512	0.828	2e-23
226496211	129	LOC100284194 [Zea mays] gi|195640232|gb|	0.9	0.697	0.555	1e-22

>gi|225431557|ref|XP_002282176.1| PREDICTED: UPF0235 protein C15orf40 homolog [Vitis vinifera] gi|147866968|emb|CAN83055.1| hypothetical protein VITISV_009894 [Vitis vinifera]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP+KKGK+KA S GSTQS    N  + PSCIR VPPSSVSIT+HAKPGSK  SITD  D
Sbjct: 1  MAPSKKGKAKANSGGSTQSSDSVN-SSFPSCIRFVPPSSVSITVHAKPGSKVSSITDFDD 59

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EA+GVQIDAPAKDGEANAALL+Y+SS++ V
Sbjct: 60 EALGVQIDAPAKDGEANAALLDYISSVVGV 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694498|ref|NP_175343.2| uncharacterized protein [Arabidopsis thaliana] gi|34365605|gb|AAQ65114.1| At1g49170 [Arabidopsis thaliana] gi|51971533|dbj|BAD44431.1| similar to serine/threonine kinase 9 gb|AAD28798.1 [Arabidopsis thaliana] gi|332194278|gb|AEE32399.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALLEYMSS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSVLGV 87

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726281|ref|NP_001237633.1| uncharacterized protein LOC100527290 [Glycine max] gi|255632017|gb|ACU16361.1| unknown [Glycine max]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 77/90 (85%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+   +T S+ K ND   PSCIR VPPSSV+ITIHAKPGSKS S+TD+SD
Sbjct: 1  MPPAKRGKAKAEPKVTTPSE-KPND--FPSCIRSVPPSSVAITIHAKPGSKSASVTDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALL+Y+SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSVLGV 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722711|ref|NP_001238533.1| uncharacterized protein LOC100499954 [Glycine max] gi|255627953|gb|ACU14321.1| unknown [Glycine max]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 78/90 (86%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+S  +T S+ K ND   PSCI+ VPPSSV+ITIHAKPG+KS SITD+SD
Sbjct: 1  MPPAKRGKAKAESKVTTPSE-KPND--FPSCIQSVPPSSVAITIHAKPGAKSASITDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALL+Y+SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSVLGV 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7770327|gb|AAF69697.1|AC016041_2 F27J15.6 [Arabidopsis thaliana]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSL 87
          EAVGVQIDAPA+DGEANAALLEYMSS+
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSV 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467753|ref|XP_004151587.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus] gi|449513315|ref|XP_004164293.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 3/91 (3%)

Query: 1   MAPAKKGKSKA-KSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVS 59
           M PAKKGK+KA K+  S QS +K+N  N PSC+R V PSSV+ITIHAKPGSK  SITD  
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSN--NYPSCLRSVSPSSVAITIHAKPGSKIASITDFG 86

Query: 60  DEAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
           D+A+GVQIDAPAKDGEANAALL+YMSS++ V
Sbjct: 87  DDALGVQIDAPAKDGEANAALLDYMSSVLGV 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852564|ref|XP_002894163.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata] gi|297340005|gb|EFH70422.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 73/90 (81%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T     P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSIFPACLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALLE++SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLEFISSVLGV 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131202|ref|XP_002328480.1| predicted protein [Populus trichocarpa] gi|222838195|gb|EEE76560.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 66/77 (85%), Gaps = 2/77 (2%)

Query: 16 STQSK--IKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD 73
          STQSK    +   N PSCIR VPPSSV+ITIHAKPGSKS SITD+SDEAVGVQIDAPAKD
Sbjct: 16 STQSKPTAPSPQNNFPSCIRAVPPSSVAITIHAKPGSKSASITDLSDEAVGVQIDAPAKD 75

Query: 74 GEANAALLEYMSSLIHV 90
          GEANAALL+Y+SS++ V
Sbjct: 76 GEANAALLDYISSVLGV 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464555|ref|XP_003602559.1| hypothetical protein MTR_3g095670 [Medicago truncatula] gi|355491607|gb|AES72810.1| hypothetical protein MTR_3g095670 [Medicago truncatula]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 61/64 (95%)

Query: 27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
          N+PSCIR +PPSSV+ITIHAKPGSKS SITDVSDEAVGVQIDAPA+DGEANAALL+Y+SS
Sbjct: 24 NIPSCIRCMPPSSVAITIHAKPGSKSASITDVSDEAVGVQIDAPARDGEANAALLDYISS 83

Query: 87 LIHV 90
          ++ V
Sbjct: 84 VLGV 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496211|ref|NP_001150562.1| LOC100284194 [Zea mays] gi|195640232|gb|ACG39584.1| uncharacterized ACR, YggU family COG1872 containing protein [Zea mays]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 68/90 (75%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP K+GK+K  +         T     P C+RL+PPS+V+I+IHAKPGSK  +IT++ D
Sbjct: 1  MAPGKRGKAKGAAPPPPTXAASTGAVGFPGCLRLMPPSTVAISIHAKPGSKVATITEIGD 60

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAAL++++SS++ V
Sbjct: 61 EAVGVQIDAPARDGEANAALVDFISSVLGV 90

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2028511	126	AT1G49170 "AT1G49170" [Arabido	0.73	0.579	0.726	1.8e-23
MGI|MGI:1914540	126	3110040N11Rik "RIKEN cDNA 3110	0.61	0.484	0.491	9.4e-11
TAIR|locus:2167361	232	AT5G63440 "AT5G63440" [Arabido	0.73	0.314	0.32	0.00012

TAIR|locus:2028511 AT1G49170 "AT1G49170" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query:    18 QSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEAN 77
             +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSDEAVGVQIDAPA+DGEAN
Sbjct:    15 ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDGEAN 74

Query:    78 AALLEYMSSLIHV 90
             AALLEYMSS++ V
Sbjct:    75 AALLEYMSSVLGV 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914540 3110040N11Rik "RIKEN cDNA 3110040N11 gene" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query:    36 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEF 95
             P   V+I IHAKPGS+  ++TD+S EAVGV I AP  +GEANA L  Y+S ++ +   + 
Sbjct:    32 PKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDV 91

Query:    96 V 96
             V
Sbjct:    92 V 92

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167361 AT5G63440 "AT5G63440" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 24/75 (32%), Positives = 41/75 (54%)

Query:    22 KTN--DENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAA 79
             +TN  D  +P CI  +    V + I  +  ++  +IT V+ + V V + APA  GEAN  
Sbjct:   124 ETNPQDAPVPPCISQLDGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNE 183

Query:    80 LLEYMSSLIHVSVGE 94
             LLE+M  ++ + + +
Sbjct:   184 LLEFMGRVLGLRLSQ 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        87   0.00091  102 3  11 23  0.37    30
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  472 (50 KB)
  Total size of DFA:  86 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.42u 0.14s 9.56t   Elapsed:  00:00:01
  Total cpu time:  9.42u 0.14s 9.56t   Elapsed:  00:00:01
  Start:  Fri May 10 18:22:07 2013   End:  Fri May 10 18:22:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034871001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_73, whole genome shotgun sequence); (128 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000690001	RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)	•								0.737
	GSVIVG00006879001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (240 aa)	•								0.571
	GSVIVG00027282001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (245 aa)	•								0.531
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)	•								0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02594	78	pfam02594, DUF167, Uncharacterized ACR, YggU famil	3e-08
COG1872	102	COG1872, COG1872, Uncharacterized conserved protei	4e-04

>gnl|CDD|217130 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 39 SVSITIHAKPGSKSCSITDV-SDEAVGVQIDAPAKDGEANAALLEYMS 85
           V + +  KP +K  SI  V  D  + V+I AP  DG+ANA L+++++
Sbjct: 4  GVLLRVRVKPNAKKNSIVGVEEDGELKVRITAPPVDGKANAELIKFLA 51

Length = 78

>gnl|CDD|224784 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 40 VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGE 94
          V + +  KP +K  SI  + +  + + V+I AP  DG+AN  L+++++    V    
Sbjct: 13 VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSS 69

Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG3276	125	consensus Uncharacterized conserved protein, conta	99.91
PRK05090	95	hypothetical protein; Validated	99.9
PF02594	77	DUF167: Uncharacterised ACR, YggU family COG1872;	99.87
PRK00647	96	hypothetical protein; Validated	99.86
PRK01310	104	hypothetical protein; Validated	99.86
PRK01530	105	hypothetical protein; Reviewed	99.85
COG1872	102	Uncharacterized conserved protein [Function unknow	99.85
TIGR00251	87	conserved hypothetical protein TIGR00251.	99.82
PRK04021	92	hypothetical protein; Reviewed	99.79
PF09581	188	Spore_III_AF: Stage III sporulation protein AF (Sp	91.07
PF01187	114	MIF: Macrophage migration inhibitory factor (MIF);	88.03
PTZ00397	116	macrophage migration inhibition factor-like protei	84.14

>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]

Probab=99.91  E-value=1.2e-24  Score=153.69  Aligned_cols=93  Identities=47%  Similarity=0.745  Sum_probs=86.9

Q ss_pred             CCCcccCcccccCCCCccccCCCCCCCCCcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHH
Q 034235            1 MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAAL   80 (100)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aL   80 (100)
                      |.|+|+|++++..+.+     +.+..++|+||..+..|.+.|.||++|||++++|+++.++.+.|.|.|||.+|+||+||
T Consensus         1 i~pkk~g~s~k~~~t~-----~~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeL   75 (125)
T KOG3276|consen    1 VMPKKKGKSTKGAETS-----KVDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAEL   75 (125)
T ss_pred             CccccccccccccccC-----CCccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHH
Confidence            6899999998877655     36778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCceEee
Q 034235           81 LEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        81 i~~LAk~LgV~ks~I~~~   98 (100)
                      ++||++.||+++|++++.
T Consensus        76 l~ylskvLgLRksdv~ld   93 (125)
T KOG3276|consen   76 LEYLSKVLGLRKSDVTLD   93 (125)
T ss_pred             HHHHHHHhhhhhhheeec
Confidence            999999999999999873

>PRK05090 hypothetical protein; Validated

Probab=99.90  E-value=2.4e-23  Score=141.99  Aligned_cols=68  Identities=24%  Similarity=0.377  Sum_probs=64.9

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      |.|+++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+||+||++|++|||+.|+|++|+|+.
T Consensus         1 ~~~~~~~~~-~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i   68 (95)
T PRK05090          1 MSAVTWDGD-GLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVI   68 (95)
T ss_pred             CCceEEeCC-eEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEE
Confidence            578888776 89999999999999999999999999999999999999999999999999999999986

>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function

Probab=99.87  E-value=2.5e-22  Score=131.99  Aligned_cols=60  Identities=28%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             CeEEEEEEEecCCCccccccccCC-eEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           38 SSVSITIHAKPGSKSCSITDVSDE-AVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        38 g~v~l~v~VkP~Ak~~~I~~~~~~-~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ++++|.|+|+|+|++++|.+++++ +|+|+|+|||+||+||+||++|||++|+||+|+|+.
T Consensus         2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i   62 (77)
T PF02594_consen    2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEI   62 (77)
T ss_dssp             TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEE
T ss_pred             CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEE
Confidence            489999999999999999999996 999999999999999999999999999999999986

Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.

>PRK00647 hypothetical protein; Validated

Probab=99.86  E-value=5.9e-22  Score=135.55  Aligned_cols=60  Identities=12%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             CeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        38 g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      +.++|.|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+.||||+++|+.
T Consensus         4 ~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~I   63 (96)
T PRK00647          4 GFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTL   63 (96)
T ss_pred             CcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEE
Confidence            579999999999999999999999999999999999999999999999999999999985

>PRK01310 hypothetical protein; Validated

Probab=99.86  E-value=9.4e-22  Score=135.92  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=61.9

Q ss_pred             cceEeeCCCeEEEEEEEecCCCccccccccC-----CeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD-----EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        30 ~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~-----~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      .++++.++ +++|.|+|+|+|++++|.++++     +.|+|+|+|||+|||||++|++|||++||||+++|+.
T Consensus         3 ~~~~~~~~-~~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~i   74 (104)
T PRK01310          3 EPWRYSAD-GLRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRL   74 (104)
T ss_pred             CceEECCC-cEEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEE
Confidence            46788786 8999999999999999999864     3899999999999999999999999999999999986

>PRK01530 hypothetical protein; Reviewed

Probab=99.85  E-value=4e-21  Score=133.17  Aligned_cols=62  Identities=18%  Similarity=0.298  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEEecCCCcccccccc----CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           36 PPSSVSITIHAKPGSKSCSITDVS----DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        36 ~~g~v~l~v~VkP~Ak~~~I~~~~----~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ..+++.|.|+|+|+|++++|.+++    +++|+|+|+|||+|||||+||++|||+.||||+|+|+.
T Consensus        10 ~~~gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~I   75 (105)
T PRK01530         10 SSHQALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEI   75 (105)
T ss_pred             CCCcEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEE
Confidence            345899999999999999999985    47999999999999999999999999999999999986

>COG1872 Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=2.2e-21  Score=134.05  Aligned_cols=68  Identities=25%  Similarity=0.399  Sum_probs=63.2

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCe--EEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEA--VGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~--l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ..+++..++ +++|+|+|+|+|+++.|.++++++  |+|+|+|||++||||++|++|||+.|++|+|+|++
T Consensus         3 ~~~~~~~~~-~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~i   72 (102)
T COG1872           3 ESAVKELDD-GVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEI   72 (102)
T ss_pred             hhhHhhcCC-ceEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEE
Confidence            356677776 899999999999999999999876  99999999999999999999999999999999986

>TIGR00251 conserved hypothetical protein TIGR00251

Probab=99.82  E-value=4.9e-20  Score=123.89  Aligned_cols=61  Identities=26%  Similarity=0.414  Sum_probs=55.9

Q ss_pred             EeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           33 RLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        33 ~~~~~g~v~l~v~VkP~Ak~~~I~~~~~--~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ++.++ +++|.|+|+|+|++++|.++++  ++|+|+|+|||+|||||+||++|||+.|++   +|+.
T Consensus         2 ~~~~~-g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i   64 (87)
T TIGR00251         2 RENDD-GLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEI   64 (87)
T ss_pred             eEeCC-eEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEE
Confidence            45555 8999999999999999999999  899999999999999999999999999999   5654

>PRK04021 hypothetical protein; Reviewed

Probab=99.79  E-value=3.5e-19  Score=120.73  Aligned_cols=58  Identities=26%  Similarity=0.471  Sum_probs=54.1

Q ss_pred             eEeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCcChhHHHHHHHHHhhcCC
Q 034235           32 IRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHV   90 (100)
Q Consensus        32 i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~--~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV   90 (100)
                      +++..+ +++|.|+|+|+|++++|.++++  +.|+|+|+|||+||+||+||++|||+.||+
T Consensus         2 ~~~~~~-~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~~   61 (92)
T PRK04021          2 LKETKE-GVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGA   61 (92)
T ss_pred             eEEeCC-cEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCC
Confidence            566676 8999999999999999999865  899999999999999999999999999997

>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives)

Probab=91.07  E-value=0.64  Score=33.63  Aligned_cols=57  Identities=18%  Similarity=0.318  Sum_probs=38.5

Q ss_pred             EEEEEEecCCCcc--ccccccCCeEEEEE------eCCCCcChhHHHHHHHHHhhcCCCCCceEeee
Q 034235           41 SITIHAKPGSKSC--SITDVSDEAVGVQI------DAPAKDGEANAALLEYMSSLIHVSVGEFVESV   99 (100)
Q Consensus        41 ~l~v~VkP~Ak~~--~I~~~~~~~l~V~V------~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~~~   99 (100)
                      .|.|.+++.....  ....+  +-+.|.+      ...+.+.+..++|.++||+.|||++++|..+|
T Consensus       124 ~I~v~l~~~~~~~~~~~~~V--e~V~I~~~~~~~~~~~~~~~~~~~~i~~~la~~~~i~~~~I~V~~  188 (188)
T PF09581_consen  124 EIKVTLSEEEEQKEEAVEPV--EPVEIDIEKESDSSKSPEDSEEEEEIKQYLADFYGISPEQIKVYV  188 (188)
T ss_pred             EEEEEEcCCCccccccCCcc--cceEecccccccccccccchHHHHHHHHHHHHHhCCCHHHeEEeC
Confidence            4666666654322  11122  3344444      45667778899999999999999999998765

The C-terminal region of these proteins is poorly conserved.

>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []

Probab=88.03  E-value=1.9  Score=29.16  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCC-cChhH----HHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAK-DGEAN----AALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~-dGkAN----~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      +|-|.|+++..=. ..|-++.+..+.|++.-. +.+.|    ++|.+||.+.||||+.+|-..
T Consensus        36 ~i~V~v~~~~~m~-fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~   97 (114)
T PF01187_consen   36 YIMVTVEDGQRMS-FGGSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN   97 (114)
T ss_dssp             GEEEEEEESTEEE-ETTB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred             hEEEEeeCCceEE-ECCCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence            5667777877653 444456677777766553 44444    678999999999999998765

MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....

>PTZ00397 macrophage migration inhibition factor-like protein; Provisional

Probab=84.14  E-value=6.4  Score=26.49  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=36.1

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCC-cChh----HHHHHHHHHhhcCCCCCceEeee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAK-DGEA----NAALLEYMSSLIHVSVGEFVESV   99 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~-dGkA----N~aLi~~LAk~LgV~ks~I~~~~   99 (100)
                      ++-|.+.|...-. +.|-++..+.|+|+.-.. ..+.    -++|.++|++.|||++.+|-..+
T Consensus        38 ~~~v~~~~~~~m~-f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f  100 (116)
T PTZ00397         38 YIMSGYDYQKHMR-FGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEF  100 (116)
T ss_pred             HEEEEEeCCceEE-ECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence            3444444443321 224456788888885433 2333    45678888999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	4e-12
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	2e-09

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Length = 108

 Score = 56.4 bits (136), Expect = 4e-12
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SLIHVS 91
              V+
Sbjct: 61 KQFRVA 66

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSL 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88 IHVSV 92
              V
Sbjct: 64 FGRDV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	99.89
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	99.83
3fwu_A	133	Macrophage migration inhibitory factor-like protei	81.03
3djh_A	114	Macrophage migration inhibitory factor; homotrimer	80.99

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A

Probab=99.89  E-value=1e-23  Score=145.55  Aligned_cols=68  Identities=24%  Similarity=0.394  Sum_probs=64.9

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ++||++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+||+||++|++|||+.||||+|+|+.
T Consensus         5 m~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~I   72 (108)
T 1n91_A            5 MSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVI   72 (108)
T ss_dssp             CCSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEE
T ss_pred             cceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEE
Confidence            468999876 89999999999999999999999999999999999999999999999999999999986

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1

Probab=99.83  E-value=3.5e-21  Score=131.90  Aligned_cols=65  Identities=22%  Similarity=0.396  Sum_probs=61.0

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~--~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ++||++.++ +++|+|+|+|+|++++|.+++  +++|+|+|+|||+||+||++|++|||+.||   |+|+.
T Consensus         4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i   70 (104)
T 1jrm_A            4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEI   70 (104)
T ss_dssp             CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEE
T ss_pred             chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEE
Confidence            579999887 799999999999999999966  999999999999999999999999999999   88875

>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}

Probab=81.03  E-value=6.7  Score=26.32  Aligned_cols=57  Identities=7%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCCcC-hhH----HHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-EAN----AALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dG-kAN----~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      ++-|.+.|+..- -+.|-.+.+..+.|+.-..-+ ..|    ++|.++|.+.|||++.+|-..
T Consensus        58 ~vmV~~~~~~~m-~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~  119 (133)
T 3fwu_A           58 LVMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVL  119 (133)
T ss_dssp             GCEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             EEEEEEECCceE-EECCcCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence            355666675433 244555678888888654333 334    567888888999999998654

>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...

Probab=80.99  E-value=4.4  Score=26.09  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCCcC-hh----HHHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-EA----NAALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dG-kA----N~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      +|.|.+.|+..- .+.|-.+.+..+.|+....-+ ..    -++|.++|.+.|||++.+|-..
T Consensus        36 ~vmV~~~~~~~m-~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~   97 (114)
T 3djh_A           36 YIAVHVVPDQLM-AFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYIN   97 (114)
T ss_dssp             GCEEEEECSCEE-EETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HeEEEEeCCceE-EEcCcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence            455566665532 244444566666666654433 23    3678888999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1yh5a1	100	d.206.1.1 (A:1-100) Hypothetical protein YggU {Esc	9e-12
d1jrma_	104	d.206.1.1 (A:) Hypothetical protein MTH637 {Archae	2e-10

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

 Score = 54.3 bits (131), Expect = 9e-12
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SLIHVSVGE 94
              V+  +
Sbjct: 61 KQFRVAKSQ 69

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 51.3 bits (123), Expect = 2e-10
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSL 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88 IHVSV 92
              V
Sbjct: 64 FGRDV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1yh5a1	100	Hypothetical protein YggU {Escherichia coli, o157	99.88
d1jrma_	104	Hypothetical protein MTH637 {Archaeon Methanobacte	99.8
d1uiza_	115	Microphage migration inhibition factor (MIF) {Afri	83.79
d1hfoa_	113	Microphage migration inhibition factor (MIF) {Tric	82.65
d2gdga1	114	Microphage migration inhibition factor (MIF) {Mous	82.11
d1dpta_	117	D-dopachrome tautomerase {Human (Homo sapiens) [Ta	81.63

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

Probab=99.88  E-value=2.5e-23  Score=140.26  Aligned_cols=70  Identities=23%  Similarity=0.394  Sum_probs=67.2

Q ss_pred             CCCcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        27 ~~P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      .++++++..++ +++|.|+|+|+|++++|.++++++|+|+|+|||+||+||+||++|||++||||+|+|+.
T Consensus         3 ~~~s~i~~~~~-gv~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I   72 (100)
T d1yh5a1           3 GVMSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVI   72 (100)
T ss_dssp             CCCCSEEECSS-EEEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEE
T ss_pred             CcccceEEcCC-eEEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCCcccEEE
Confidence            46889999987 89999999999999999999999999999999999999999999999999999999986

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=1.7e-20  Score=127.05  Aligned_cols=65  Identities=22%  Similarity=0.411  Sum_probs=60.4

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCcChhHHHHHHHHHhhcCCCCCceEe
Q 034235           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVE   97 (100)
Q Consensus        29 P~~i~~~~~g~v~l~v~VkP~Ak~~~I~~~~~--~~l~V~V~ApP~dGkAN~aLi~~LAk~LgV~ks~I~~   97 (100)
                      ++||+..++ +++|.|+|+|+|++++|.++++  ++|+|+|+|||+||+||+||++|||++|+   ++|+.
T Consensus         4 ~~~l~~~~~-gv~i~v~V~P~A~~~~i~g~~~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I   70 (104)
T d1jrma_           4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEI   70 (104)
T ss_dssp             CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEE
T ss_pred             hHHHhccCC-eEEEEEEEeeCCCcceeeeecCCCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEE
Confidence            689999987 8999999999999999999875  89999999999999999999999999995   77764

>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=83.79  E-value=0.83  Score=28.52  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-Cc----ChhHHHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KD----GEANAALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~d----GkAN~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      +|-|.+.++..-. +.|-++.+.-+.|+.-- .+    .+-.++|.+||.+.||||..+|-..
T Consensus        37 ~vmv~v~~~~~m~-fggs~~P~a~~~v~siG~l~~~~n~~~s~~i~~~l~~~LgI~~~Riyi~   98 (115)
T d1uiza_          37 YIAIHIVPDQIMS-FGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYIN   98 (115)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HEEEEEcCCceEE-eCCCCCcEEEEEEEEEcCCChhhhHHHHHHHHHHHHHHcCCCcceEEEE
Confidence            5667777777643 34445556566665542 22    2456778999999999999998764

>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: Trichinella spiralis [TaxId: 6334]

Probab=82.65  E-value=1.9  Score=26.59  Aligned_cols=57  Identities=7%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CcCh----hHHHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGE----ANAALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGk----AN~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      +|-|.|.++..-. +.|-++.+.-+.|++.- .+..    --++|.+||.+.|||+.++|-..
T Consensus        36 ~vmV~v~~~~~m~-fgGs~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~   97 (113)
T d1hfoa_          36 YVAVHINTDQQLS-FGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIH   97 (113)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HEEEEEcCCCcEE-EcCCCCcEEEEEEEEecCCChHHhHHHHHHHHHHHHHHcCCCcceEEEE
Confidence            5667777776543 44445566666665553 3333    34678999999999999998764

>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.11  E-value=2.1  Score=26.56  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CcChh----HHHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEA----NAALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-~dGkA----N~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      ++-|.|.|+..-. ..|-++.+.-+.|++.- .+.+.    .++|.++|.+.|||+..+|-..
T Consensus        36 ~vmV~v~~~~~m~-fgGs~~P~a~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~   97 (114)
T d2gdga1          36 YIAVHVVPDQLMT-FSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYIN   97 (114)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HEEEEEeCCCCeE-EcCCCCCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence            5667777776543 44445566666665553 33333    3678999999999999998764

>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: D-dopachrome tautomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=2.7  Score=26.04  Aligned_cols=57  Identities=11%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-----Cc-ChhHHHHHHHHHhhcCCCCCceEee
Q 034235           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-----KD-GEANAALLEYMSSLIHVSVGEFVES   98 (100)
Q Consensus        41 ~l~v~VkP~Ak~~~I~~~~~~~l~V~V~ApP-----~d-GkAN~aLi~~LAk~LgV~ks~I~~~   98 (100)
                      ++-|.|.|+..-. ..|-++.+.-+.|++.-     ++ .+--++|.++|.+.|||++.+|-..
T Consensus        36 ~vmV~v~~~~~m~-fgGs~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~   98 (117)
T d1dpta_          36 RVNVTVRPGLAMA-LSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIR   98 (117)
T ss_dssp             GCEEEEECSCCCC-BTTBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             HEEEEEEcCCceE-ECCCCCcEEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHcCCCcCeEEEE
Confidence            5677888877654 44445556666666432     22 2455678999999999999998654