Citrus Sinensis ID: 034276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Secondary Structure (PSIPRED)
cEEEEEEcccHHHHHccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEcccccEEccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHcccHHEEcccccccEEEEEEEcccEEEcccccEEEccccEEEEEEEcccc
Coil and Loop (DISEMBL)
mqltlefgggLELLCDSvkvhnvdvvppkgsekLIMKDLLSWVGTnlikerpemfmkgdsvrpgvlVLVNdcdwelsgqldttleeKDVVVFISTLHGG
Flexible Loop (DISEMBL)
MQLTLEFGGGLELLCDSVKVHNVDvvppkgseklimKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELsgqldttleekdVVVFISTLHGG
Low Complexity Region (SEG)
MQltlefggglellCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Disordered region (IsUnstruct)
****LEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL***
Disordered Region (DISOPRED)
MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG*
Disordered Region (DISEMBL)
MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Disordered Region (DISPRO)
MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
B3H7G2	99	Ubiquitin-related modifie	yes	no	1.0	1.0	0.828	3e-41
A0MDQ1	101	Ubiquitin-related modifie	no	no	1.0	0.980	0.811	1e-39
Q0D6M1	100	Ubiquitin-related modifie	yes	no	1.0	0.99	0.76	7e-36
Q7GBC8	100	Ubiquitin-related modifie	N/A	no	1.0	0.99	0.76	7e-36
B6SXH2	101	Ubiquitin-related modifie	N/A	no	1.0	0.980	0.762	2e-34
Q5ZJU4	101	Ubiquitin-related modifie	yes	no	0.959	0.940	0.587	6e-27
A9YUB5	101	Ubiquitin-related modifie	N/A	no	0.979	0.960	0.575	4e-26
Q148F0	101	Ubiquitin-related modifie	yes	no	0.979	0.960	0.575	4e-26
Q9BTM9	101	Ubiquitin-related modifie	yes	no	0.979	0.960	0.555	6e-26
Q9D2P4	101	Ubiquitin-related modifie	yes	no	0.959	0.940	0.567	9e-26

>sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 89/99 (89%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQ TLEFGGGLELLCDSVK+H V++     S+ L MKDLLSWV TNLIKERPEMFMKGD+
Sbjct: 1  MQFTLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.
Arabidopsis thaliana (taxid: 3702)

>sp|A0MDQ1|URM11_ARATH Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 88/101 (87%), Gaps = 2/101 (1%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKG--SEKLIMKDLLSWVGTNLIKERPEMFMKG 58
           MQLTLEFGGGLELLCDS K+H V+V  P G  S+   MK LLSWV TNLIKERPEMFMKG
Sbjct: 1   MQLTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKG 60

Query: 59  DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           D+VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D6M1|URM1_ORYSJ Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 1   MQLTLEFGGGLELLCD-SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD 59
           M LTLEFGGGLELL + S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGD
Sbjct: 1   MHLTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGD 60

Query: 60  SVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           SVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 61  SVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7GBC8|URM1_ORYSI Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 1   MQLTLEFGGGLELLCD-SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD 59
           M LTLEFGGGLELL + S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGD
Sbjct: 1   MHLTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGD 60

Query: 60  SVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           SVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 61  SVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Oryza sativa subsp. indica (taxid: 39946)

>sp|B6SXH2|URM1_MAIZE Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 82/101 (81%), Gaps = 2/101 (1%)

Query: 1   MQLTLEFGGGLELLC-DSVKVHNVDVVPPK-GSEKLIMKDLLSWVGTNLIKERPEMFMKG 58
           M LTLEFGGGLELL  +S KVH V+V  PK G  K+ MK LLSWV  NLIKERPEMF+K 
Sbjct: 1   MHLTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKA 60

Query: 59  DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           DSVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 61  DSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Zea mays (taxid: 4577)

>sp|Q5ZJU4|URM1_CHICK Ubiquitin-related modifier 1 homolog OS=Gallus gallus GN=URM1 PE=3 SV=1

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 3   LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVR 62
           L +EFGGG ELL D VK H V +  P   E   +++LL W+  NL+KERPE+FM+G+SVR
Sbjct: 7   LQVEFGGGAELLFDGVKKHQVTL--PSQPEPWDIRNLLKWIKQNLLKERPELFMQGESVR 64

Query: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           PG+LVL+ND DWEL G+LD  L+++D V+FISTLHGG
Sbjct: 65  PGILVLINDADWELMGELDYKLQDQDNVLFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Gallus gallus (taxid: 9031)

>sp|A9YUB5|URM1_CAPHI Ubiquitin-related modifier 1 homolog OS=Capra hircus GN=URM1 PE=3 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 2/99 (2%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           + + +EFGGG ELL D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDS
Sbjct: 5   LSVEVEFGGGAELLFDGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Query: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VRPG+LVLVND DWEL G+LD  L+++D V+FISTLHGG
Sbjct: 63  VRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Capra hircus (taxid: 9925)

>sp|Q148F0|URM1_BOVIN Ubiquitin-related modifier 1 homolog OS=Bos taurus GN=URM1 PE=3 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 2/99 (2%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           + + +EFGGG ELL D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDS
Sbjct: 5   LSVEVEFGGGAELLFDGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDS 62

Query: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VRPG+LVLVND DWEL G+LD  L+++D V+FISTLHGG
Sbjct: 63  VRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Bos taurus (taxid: 9913)

>sp|Q9BTM9|URM1_HUMAN Ubiquitin-related modifier 1 homolog OS=Homo sapiens GN=URM1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           + + +EFGGG ELL D +K H V +  P   E   +++LL W+  NL+KERPE+F++GDS
Sbjct: 5   LSVEVEFGGGAELLFDGIKKHRVTL--PGQEEPWDIRNLLIWIKKNLLKERPELFIQGDS 62

Query: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VRPG+LVL+ND DWEL G+LD  L+++D V+FISTLHGG
Sbjct: 63  VRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Homo sapiens (taxid: 9606)

>sp|Q9D2P4|URM1_MOUSE Ubiquitin-related modifier 1 homolog OS=Mus musculus GN=Urm1 PE=1 SV=1

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 3   LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVR 62
           + +EFGGG ELL D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDSVR
Sbjct: 7   VKVEFGGGAELLFDGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVR 64

Query: 63  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           PG+LVL+ND DWEL G+LD  L+++D ++FISTLHGG
Sbjct: 65  PGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 101

Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
255541426	99	Protein C9orf74, putative [Ricinus commu	1.0	1.0	0.878	2e-43
225453871	99	PREDICTED: ubiquitin-related modifier 1	1.0	1.0	0.878	2e-42
449454498	99	PREDICTED: ubiquitin-related modifier 1	1.0	1.0	0.868	5e-42
351725511	99	uncharacterized protein LOC100306072 [Gl	1.0	1.0	0.838	8e-41
356505242	99	PREDICTED: ubiquitin-related modifier 1	1.0	1.0	0.828	1e-40
388500286	99	unknown [Lotus japonicus] gi|388506328|g	1.0	1.0	0.838	5e-40
186511269	99	ubiquitin-related modifier 1-2 [Arabidop	1.0	1.0	0.828	1e-39
388492868	101	unknown [Medicago truncatula]	1.0	0.980	0.831	1e-38
147851956	105	hypothetical protein VITISV_018251 [Viti	0.939	0.885	0.849	3e-38
449472681	101	PREDICTED: ubiquitin-related modifier 1	1.0	0.980	0.811	4e-38

>gi|255541426|ref|XP_002511777.1| Protein C9orf74, putative [Ricinus communis] gi|223548957|gb|EEF50446.1| Protein C9orf74, putative [Ricinus communis]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 93/99 (93%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLCDSVK+HN++V P  G++KL MKDLL+WV  NLIKERPEMFMKGDS
Sbjct: 1  MQLTLEFGGGLELLCDSVKIHNINVDPKNGADKLTMKDLLAWVRNNLIKERPEMFMKGDS 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453871|ref|XP_002278537.1| PREDICTED: ubiquitin-related modifier 1 homolog 2 isoform 1 [Vitis vinifera] gi|296089135|emb|CBI38838.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 92/99 (92%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLC+SVK+H+V+V P  G EKL MKDLLSWV  NLIKERPEMFMKGDS
Sbjct: 1  MQLTLEFGGGLELLCESVKIHSVNVDPQVGEEKLTMKDLLSWVRANLIKERPEMFMKGDS 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQLDTTLEEKDV+VFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVIVFISTLHGG 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454498|ref|XP_004144991.1| PREDICTED: ubiquitin-related modifier 1 homolog 2-like [Cucumis sativus]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/99 (86%), Positives = 91/99 (91%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLC+SVK+HNV + P  G  K IMKDLLSWV +NLIKERPEMFMKGD+
Sbjct: 1  MQLTLEFGGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFMKGDT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725511|ref|NP_001237095.1| uncharacterized protein LOC100306072 [Glycine max] gi|255627445|gb|ACU14067.1| unknown [Glycine max]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 91/99 (91%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLCDS K+HNV++    G +KLIMKDLLSWV TNLIKERPEMFMKGD+
Sbjct: 1  MQLTLEFGGGLELLCDSKKIHNVNIEQHNGEDKLIMKDLLSWVQTNLIKERPEMFMKGDT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVL NDCDWELSGQL+T+LE+KDVVVFISTLHGG
Sbjct: 61 VRPGVLVLENDCDWELSGQLNTSLEDKDVVVFISTLHGG 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505242|ref|XP_003521401.1| PREDICTED: ubiquitin-related modifier 1 homolog 2-like [Glycine max]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 92/99 (92%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLCDS K+HNV++    G +KLIMKDLL+WV TNLIKERPEMFMKG++
Sbjct: 1  MQLTLEFGGGLELLCDSKKIHNVNIEQHNGEDKLIMKDLLAWVRTNLIKERPEMFMKGNT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQL+T+LE+KDVVVFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLNTSLEDKDVVVFISTLHGG 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500286|gb|AFK38209.1| unknown [Lotus japonicus] gi|388506328|gb|AFK41230.1| unknown [Lotus japonicus]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 89/99 (89%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQLTLEFGGGLELLCDS K+HNV+V    G +KL MK LLSWV TNLIKERPEMFMKGD+
Sbjct: 1  MQLTLEFGGGLELLCDSKKIHNVNVEQQNGEDKLTMKGLLSWVRTNLIKERPEMFMKGDT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQL T+LE+KDVVVFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLSTSLEDKDVVVFISTLHGG 99

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511269|ref|NP_001118872.1| ubiquitin-related modifier 1-2 [Arabidopsis thaliana] gi|238692413|sp|B3H7G2.1|URM12_ARATH RecName: Full=Ubiquitin-related modifier 1 homolog 2 gi|332646635|gb|AEE80156.1| ubiquitin-related modifier 1-2 [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 89/99 (89%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
          MQ TLEFGGGLELLCDSVK+H V++     S+ L MKDLLSWV TNLIKERPEMFMKGD+
Sbjct: 1  MQFTLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDT 60

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61 VRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492868|gb|AFK34500.1| unknown [Medicago truncatula]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 90/101 (89%), Gaps = 2/101 (1%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGS--EKLIMKDLLSWVGTNLIKERPEMFMKG 58
           MQLTLEFGGGLELLCDS K+HNV+V   + +  +KL MK LLSWV TNLIKERPEMFMKG
Sbjct: 1   MQLTLEFGGGLELLCDSKKIHNVNVEFEQQNKEDKLTMKGLLSWVRTNLIKERPEMFMKG 60

Query: 59  DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           D+VRPGVLVLVNDCDWELSGQL TTLEEKDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLSTTLEEKDVVVFISTLHGG 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147851956|emb|CAN82245.1| hypothetical protein VITISV_018251 [Vitis vinifera]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 84/93 (90%)

Query: 7   FGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVL 66
             GGLELLC+SVK+H+V+V P  G EKL MKDLLSWV  NLIKERPEMFMKGDSVRPGVL
Sbjct: 13  LSGGLELLCESVKIHSVNVDPQVGEEKLTMKDLLSWVRANLIKERPEMFMKGDSVRPGVL 72

Query: 67  VLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VLVNDCDWELSGQLDTTLEEKDV+VFISTLHGG
Sbjct: 73  VLVNDCDWELSGQLDTTLEEKDVIVFISTLHGG 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449472681|ref|XP_004153667.1| PREDICTED: ubiquitin-related modifier 1 homolog 2-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 88/101 (87%), Gaps = 2/101 (1%)

Query: 1   MQLTLEF--GGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKG 58
           M L L+F   GGLELLC+SVK+HNV + P  G  K IMKDLLSWV +NLIKERPEMFMKG
Sbjct: 1   MTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFMKG 60

Query: 59  DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           D+VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:4515103292	99	AT3G61113 "AT3G61113" [Arabido	0.858	0.858	0.811	2e-33
TAIR|locus:4010713712	101	AT2G45695 "AT2G45695" [Arabido	0.858	0.841	0.781	6e-32
ZFIN|ZDB-GENE-091204-300	101	urm1 "ubiquitin related modifi	0.828	0.811	0.607	2.9e-23
RGD|1306599	101	Urm1 "ubiquitin related modifi	0.828	0.811	0.571	2.6e-22
UNIPROTKB|Q5ZJU4	101	URM1 "Ubiquitin-related modifi	0.828	0.811	0.571	4.3e-22
UNIPROTKB|Q148F0	101	URM1 "Ubiquitin-related modifi	0.828	0.811	0.583	9e-22
UNIPROTKB|A9YUB5	101	URM1 "Ubiquitin-related modifi	0.828	0.811	0.583	9e-22
UNIPROTKB|E2QUA4	101	URM1 "Uncharacterized protein"	0.828	0.811	0.571	1.1e-21
UNIPROTKB|Q9BTM9	101	URM1 "Ubiquitin-related modifi	0.828	0.811	0.559	1.1e-21
UNIPROTKB|F1RR84	101	URM1 "Uncharacterized protein"	0.828	0.811	0.559	1.1e-21

TAIR|locus:4515103292 AT3G61113 "AT3G61113" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 69/85 (81%), Positives = 76/85 (89%)

Query:    15 CDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDW 74
             CDSVK+H V++     S+ L MKDLLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDCDW
Sbjct:    15 CDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDW 74

Query:    75 ELSGQLDTTLEEKDVVVFISTLHGG 99
             ELSGQLDTTLE+KDV+VFISTLHGG
Sbjct:    75 ELSGQLDTTLEDKDVIVFISTLHGG 99

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

TAIR|locus:4010713712 AT2G45695 "AT2G45695" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/87 (78%), Positives = 74/87 (85%)

Query:    15 CDSVKVHNVDVVPPKG--SEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDC 72
             CDS K+H V+V  P G  S+   MK LLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDC
Sbjct:    15 CDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDC 74

Query:    73 DWELSGQLDTTLEEKDVVVFISTLHGG 99
             DWELSGQLDT +E+KDVVVFISTLHGG
Sbjct:    75 DWELSGQLDTVIEDKDVVVFISTLHGG 101

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

ZFIN|ZDB-GENE-091204-300 urm1 "ubiquitin related modifier 1" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H+V +  P  S    MK LL+W+  N++KERPE+FM+GD+VRPG+LVL+ND DWE
Sbjct:    20 DGVKNHHVTL--PDQSNPWDMKQLLAWIRGNMLKERPELFMQGDTVRPGILVLINDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L++KD VVFISTLHGG
Sbjct:    78 LMGELDYQLQDKDNVVFISTLHGG 101

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

RGD|1306599 Urm1 "ubiquitin related modifier 1" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 48/84 (57%), Positives = 65/84 (77%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   +++LL W+ TNL+KERPE+F++GDSVRPG+LVL+ND DWE
Sbjct:    20 DGVKKHQVTL--PGQEEPWDIRNLLVWIKTNLLKERPELFIQGDSVRPGILVLINDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D ++FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSILFISTLHGG 101

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0034227 "tRNA thio-modification" evidence=IEA

UNIPROTKB|Q5ZJU4 URM1 "Ubiquitin-related modifier 1 homolog" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 48/84 (57%), Positives = 64/84 (76%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   +++LL W+  NL+KERPE+FM+G+SVRPG+LVL+ND DWE
Sbjct:    20 DGVKKHQVTL--PSQPEPWDIRNLLKWIKQNLLKERPELFMQGESVRPGILVLINDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D V+FISTLHGG
Sbjct:    78 LMGELDYKLQDQDNVLFISTLHGG 101

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

UNIPROTKB|Q148F0 URM1 "Ubiquitin-related modifier 1 homolog" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/84 (58%), Positives = 63/84 (75%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDSVRPG+LVLVND DWE
Sbjct:    20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D V+FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSVLFISTLHGG 101

GO:0034227 "tRNA thio-modification" evidence=ISS

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

UNIPROTKB|A9YUB5 URM1 "Ubiquitin-related modifier 1 homolog" [Capra hircus (taxid:9925)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/84 (58%), Positives = 63/84 (75%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDSVRPG+LVLVND DWE
Sbjct:    20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D V+FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSVLFISTLHGG 101

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

UNIPROTKB|E2QUA4 URM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/84 (57%), Positives = 63/84 (75%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDSVRPG+LVLVND DWE
Sbjct:    20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D ++FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSILFISTLHGG 101

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9BTM9 URM1 "Ubiquitin-related modifier 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D +K H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWE
Sbjct:    20 DGIKKHRVTL--PGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D V+FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSVLFISTLHGG 101

GO:0005515 "protein binding" evidence=IPI

GO:0002098 "tRNA wobble uridine modification" evidence=IMP

GO:0005829 "cytosol" evidence=IC

GO:0034227 "tRNA thio-modification" evidence=IMP

GO:0016783 "sulfurtransferase activity" evidence=IDA

UNIPROTKB|F1RR84 URM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query:    16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
             D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWE
Sbjct:    20 DGVKKHQVTL--PGQDEPWDVRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 77

Query:    76 LSGQLDTTLEEKDVVVFISTLHGG 99
             L G+LD  L+++D ++FISTLHGG
Sbjct:    78 LLGELDYQLQDQDSILFISTLHGG 101

GO:0034227 "tRNA thio-modification" evidence=IEA

GO:0016783 "sulfurtransferase activity" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9YUB5	URM1_CAPHI	No assigned EC number	0.5757	0.9797	0.9603	N/A	no
P40554	URM1_YEAST	No assigned EC number	0.3465	0.9696	0.9696	yes	no
Q9BTM9	URM1_HUMAN	No assigned EC number	0.5555	0.9797	0.9603	yes	no
Q75AD1	URM1_ASHGO	No assigned EC number	0.3861	0.9797	0.97	yes	no
Q9D2P4	URM1_MOUSE	No assigned EC number	0.5670	0.9595	0.9405	yes	no
Q5ZJU4	URM1_CHICK	No assigned EC number	0.5876	0.9595	0.9405	yes	no
Q6FWQ3	URM1_CANGA	No assigned EC number	0.3960	0.9595	0.9693	yes	no
A3GFM6	URM1_PICST	No assigned EC number	0.3960	0.9797	0.9603	yes	no
Q7GBC8	URM1_ORYSI	No assigned EC number	0.76	1.0	0.99	N/A	no
Q54QN0	URM1_DICDI	No assigned EC number	0.4848	0.9696	1.0	yes	no
Q2U9H6	URM1_ASPOR	No assigned EC number	0.4509	0.9898	0.8166	yes	no
B6SXH2	URM1_MAIZE	No assigned EC number	0.7623	1.0	0.9801	N/A	no
B3H7G2	URM12_ARATH	No assigned EC number	0.8282	1.0	1.0	yes	no
Q0D6M1	URM1_ORYSJ	No assigned EC number	0.76	1.0	0.99	yes	no
Q7Q6I6	URM1_ANOGA	No assigned EC number	0.4123	0.9494	0.8623	yes	no
B5FVI0	URM1_YARLI	No assigned EC number	0.4554	0.9797	0.9797	yes	no
Q7KU86	URM1_DROME	No assigned EC number	0.4848	0.9696	0.9504	yes	no
A0MDQ1	URM11_ARATH	No assigned EC number	0.8118	1.0	0.9801	no	no
A8IC48	URM1_CHLRE	No assigned EC number	0.5353	0.9898	0.9898	N/A	no
Q6CQU4	URM1_KLULA	No assigned EC number	0.4158	0.9898	0.9702	yes	no
Q148F0	URM1_BOVIN	No assigned EC number	0.5757	0.9797	0.9603	yes	no
Q1HQ10	URM1_BOMMO	No assigned EC number	0.5050	0.9393	0.8532	N/A	no
B5DQK2	URM1_DROPS	No assigned EC number	0.4848	0.9696	0.9696	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G61113	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Ubiquitin related modifier 1 (InterPro-IPR015221), Ubiquitin-related modifier 1 (InterPro-IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro-IPR016155); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G45695.1); Has 242 Blast hits to 242 proteins in 127 species- Archae - 2; Bacteria - 0; Metazoa - 93; Fungi - 74; Plants - 18; Viruses - 0; Other Eukaryotes - [...] (99 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CNX5	CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor [...] (464 aa)					•	•	•		0.877
	ELO3	ELO3 (ELONGATA 3); histone acetyltransferase; Histone acetyltransferase (By similarity). Part o [...] (565 aa)					•		•		0.441

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam09138	96	pfam09138, Urm1, Urm1 (Ubiquitin related modifier)	3e-46
cd01764	94	cd01764, Urm1, Urm1-like ubuitin domain	4e-36
COG5131	96	COG5131, URM1, Ubiquitin-like protein [Posttransla	4e-13

>gnl|CDD|220123 pfam09138, Urm1, Urm1 (Ubiquitin related modifier)

 Score =  143 bits (362), Expect = 3e-46
 Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 2/98 (2%)

Query: 2  QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSV 61
          ++T+EF GGLELL D  K H V +  P  S  + M DL+ ++  NLIKERPE+F++GD+V
Sbjct: 1  KITVEFLGGLELLFDKQKKHKVTL--PIDSGPVNMGDLIDYIKKNLIKERPEVFLEGDTV 58

Query: 62 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          RPG+LVL+NDCDWEL G+LD  LE+ D + FISTLHGG
Sbjct: 59 RPGILVLINDCDWELLGELDYVLEDGDKITFISTLHGG 96

Urm1 is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like pathway urmylation. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily. Length = 96

>gnl|CDD|176360 cd01764, Urm1, Urm1-like ubuitin domain

 Score =  117 bits (295), Expect = 4e-36
 Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 3/97 (3%)

Query: 3  LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVR 62
          + +EF GGLELL  + K H+V +    G + + + DLL +V +NL++ERP++F++G SVR
Sbjct: 1  IKVEFLGGLELLFGNQKEHHVVLD---GEKPVTVGDLLDYVASNLLEERPDLFIEGGSVR 57

Query: 63 PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          PG++VL+ND DWEL G+ D  LE+ D VVFISTLHGG
Sbjct: 58 PGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes. Length = 94

>gnl|CDD|227460 COG5131, URM1, Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (143), Expect = 4e-13
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           ++ +E  GGL++  +  +   +     +GS    + D L +        R  +F++   
Sbjct: 1  HEMKVELLGGLDVEFNQ-REIELTREEVEGSSVGTLIDALRYFIYA--PTRDSIFIEHGE 57

Query: 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          +RPG++ L+ND DWEL  +    LE+ D++VFISTLHGG
Sbjct: 58 LRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHGG 96

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
cd01764	94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	100.0
PF09138	96	Urm1: Urm1 (Ubiquitin related modifier); InterPro:	99.97
KOG4146	101	consensus Ubiquitin-like protein [Posttranslationa	99.94
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	99.94
COG5131	96	URM1 Ubiquitin-like protein [Posttranslational mod	99.91
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	99.87
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	99.87
PRK11130	81	moaD molybdopterin synthase small subunit; Provisi	99.86
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	99.85
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	99.83
COG1977	84	MoaD Molybdopterin converting factor, small subuni	99.79
PRK06944	65	sulfur carrier protein ThiS; Provisional	99.27
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	99.24
PRK08364	70	sulfur carrier protein ThiS; Provisional	99.19
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	99.12
PRK06437	67	hypothetical protein; Provisional	98.94
PRK06488	65	sulfur carrier protein ThiS; Validated	98.94
PRK08053	66	sulfur carrier protein ThiS; Provisional	98.88
KOG3474	84	consensus Molybdopterin converting factor, small s	98.88
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	98.85
PRK01777	95	hypothetical protein; Validated	98.75
PRK05659	66	sulfur carrier protein ThiS; Validated	98.74
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	98.68
PRK05863	65	sulfur carrier protein ThiS; Provisional	98.55
PRK07440	70	hypothetical protein; Provisional	98.52
PF06805	82	Lambda_tail_I: Bacteriophage lambda tail assembly	98.51
PRK07696	67	sulfur carrier protein ThiS; Provisional	98.41
PRK06083	84	sulfur carrier protein ThiS; Provisional	98.36
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	98.17
PF03658	84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	97.47
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	97.05
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	97.04
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	96.83
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	96.83
COG4723	198	Phage-related protein, tail component [Function un	96.67
PF02824	60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	96.38
cd01668	60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	95.46
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	95.32
cd01666	75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	95.31
PTZ00044	76	ubiquitin; Provisional	95.2
cd01616	60	TGS The TGS domain, named after the ThrRS, GTPase,	95.07
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	94.75
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	94.61
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.03
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	93.97
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	93.9
cd01669	76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	93.76
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	93.22
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	92.35
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	92.18
TIGR02988	59	YaaA_near_RecF S4 domain protein YaaA. This small	91.93
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	91.47
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	91.46
PF14453	57	ThiS-like: ThiS-like ubiquitin	91.45
COG2501	73	S4-like RNA binding protein [Replication, recombin	90.97
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	90.63
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	89.49
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	88.93
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	88.87
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	88.85
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	87.94
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	87.54
cd04938	76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	87.26
COG2914	99	Uncharacterized protein conserved in bacteria [Fun	86.71
PF00498	68	FHA: FHA domain; InterPro: IPR000253 The forkhead-	86.4
PF13275	65	S4_2: S4 domain; PDB: 1P9K_A.	86.12
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	85.43
PRK11507	70	ribosome-associated protein; Provisional	84.77
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	84.52
PLN02560	308	enoyl-CoA reductase	82.57
smart00363	60	S4 S4 RNA-binding domain.	80.35
cd01667	61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	80.19

>cd01764 Urm1 Urm1-like ubuitin domain

Probab=100.00  E-value=3.2e-34  Score=186.16  Aligned_cols=94  Identities=53%  Similarity=0.916  Sum_probs=88.3

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |+|+|+|+|+.++|+++++.+++|.+   +++||++||++|+++||..++++|.++|++||+|+|||||+||++++|++|
T Consensus         1 i~v~f~ggl~~~~~~~~~~~~~~~~~---~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t   77 (94)
T cd01764           1 IKVEFLGGLELLFGNQKEHHVVLDGE---KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDY   77 (94)
T ss_pred             CEEEEechHHHHhCCceEEEEeccCC---CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCccc
Confidence            68999999999999988777778732   578999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|||+|+||||+|||
T Consensus        78 ~L~dgD~v~i~P~v~GG   94 (94)
T cd01764          78 ILEDGDHVVFISTLHGG   94 (94)
T ss_pred             CCCCcCEEEEECCCCCC
Confidence            99999999999999998

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.

>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []

Probab=99.97  E-value=2.2e-30  Score=168.76  Aligned_cols=96  Identities=53%  Similarity=0.946  Sum_probs=82.5

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      +|+|+|.|+++.+|++++++.+++|  ..++..|+++|+.+|++++...++++|.+++++||+|+||||+.||+++++++
T Consensus         1 ~i~vEF~GGlE~Lf~~~k~h~v~l~--~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~   78 (96)
T PF09138_consen    1 KITVEFSGGLELLFGNQKKHKVSLP--SDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEED   78 (96)
T ss_dssp             EEEEEEETTCGGGTTT-SEEEEEE---SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCC
T ss_pred             CEEEEEcCcHHHHhCCceeEEEEcC--CCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcc
Confidence            6999999999999999988999998  23468999999999999998889999999999999999999999999999999


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||.|.|+|++|||
T Consensus        79 y~l~~~D~I~FiSTLHGG   96 (96)
T PF09138_consen   79 YVLKDGDNITFISTLHGG   96 (96)
T ss_dssp             SB--TTEEEEEEETTT--
T ss_pred             eEcCCCCEEEEEccCCCC
Confidence            999999999999999998

Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.

>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-26  Score=149.70  Aligned_cols=97  Identities=43%  Similarity=0.746  Sum_probs=90.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |.|+|+|.|++..+|++++.+.+.++.  +.+.+||++||+++.++|-+.+.++|..+|++||+++++||+.||++|+.+
T Consensus         5 ~~vkvef~Gg~dllfn~~k~~~~~l~~--~e~~~tvgdll~yi~~~~ie~r~~lFi~~gsvrpGii~lINd~DWElleke   82 (101)
T KOG4146|consen    5 HEVKVEFLGGLDLLFNKQKIHLTRLEV--GESPATVGDLLDYIFGKYIETRDSLFIHHGSVRPGIIVLINDMDWELLEKE   82 (101)
T ss_pred             eeEEEEEcCceeeeECCeEEEEEeccc--CCCcccHHHHHHHHHHHHhcCCcceEeeCCcCcCcEEEEEeccchhhhccc
Confidence            579999999999999998877777762  346899999999999999988989999999999999999999999999999


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +++|++||.|.|++++|||
T Consensus        83 dy~ledgD~ivfiSTlHGg  101 (101)
T KOG4146|consen   83 DYPLEDGDHIVFISTLHGG  101 (101)
T ss_pred             ccCcccCCEEEEEEeccCC
Confidence            9999999999999999998

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=99.94  E-value=3.3e-26  Score=145.33  Aligned_cols=88  Identities=24%  Similarity=0.365  Sum_probs=80.3

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |||+|||.||+++|+. +.+++++      ++|+++|++.|.++||.+...+|++++.++++++|+||++.++...+  |
T Consensus         1 v~V~~fa~lre~~g~~-~~~v~~~------~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~--~   71 (88)
T TIGR01687         1 VRVKYFATLRDITGKK-SEEIEIE------GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG--T   71 (88)
T ss_pred             CEEEEEhHHHHHhCCc-eEEEEeC------CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC--C
Confidence            6899999999999974 4566665      68999999999999999888899999999999999999999988765  8


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+||||+|||
T Consensus        72 ~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        72 ELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             CCCCCCEEEEeCCCcCC
Confidence            99999999999999998

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.6e-24  Score=137.12  Aligned_cols=95  Identities=32%  Similarity=0.557  Sum_probs=84.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH-hcCcccccccccCCccccceEEEEcCccceecCC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT-NLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ   79 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~-~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g   79 (99)
                      |.+||+|.|+|...|+ +|++++.+..   .++++|..++++++. .|...+..+|.++|++||+++++||++||++++.
T Consensus         1 ~~~KvellGgld~~fn-qR~~el~~~~---~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLlek   76 (96)
T COG5131           1 HEMKVELLGGLDVEFN-QREIELTREE---VEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEK   76 (96)
T ss_pred             CCceEEEeccchhhhc-ceeeEEEEcc---cCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhc
Confidence            6799999999999999 6777777663   268999999999987 3344577899999999999999999999999999


Q ss_pred             ccCccCCCCEEEEEecCCCC
Q 034276           80 LDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        80 ~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+++|++||.|.|+|++|||
T Consensus        77 e~y~ledgDiIvfistlHGg   96 (96)
T COG5131          77 ERYPLEDGDIIVFISTLHGG   96 (96)
T ss_pred             ccccCCCCCEEEEEecccCC
Confidence            99999999999999999998

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=99.87  E-value=2.7e-22  Score=126.03  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|||+|||.||+.+|.. +.+++++     +++|+++|++.|..+||.+..        ++..+++++|++.+.    .
T Consensus         2 m~i~V~~fa~~re~~g~~-~~~~~~~-----~~~tv~~L~~~l~~~~p~l~~--------~~~~~~vavN~~~v~----~   63 (82)
T PLN02799          2 VEIKVLFFARARELTGVS-DMTLELP-----AGSTTADCLAELVAKFPSLEE--------VRSCCVLALNEEYTT----E   63 (82)
T ss_pred             eEEEEEehHHHHHHhCCC-eEEEECC-----CCCcHHHHHHHHHHHChhHHH--------HhhCcEEEECCEEcC----C
Confidence            799999999999999964 4678888     789999999999999987542        344688999999863    7


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|++||+|+||||++||
T Consensus        64 ~~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         64 SAALKDGDELAIIPPISGG   82 (82)
T ss_pred             CcCcCCCCEEEEeCCCCCC
Confidence            8999999999999999998

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=99.87  E-value=6.7e-22  Score=122.65  Aligned_cols=80  Identities=20%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |+|+|||.|++.+|+. +.+++++     +++|++||++.|.++||..       .+..++.+.|+|||+.+.    .++
T Consensus         1 i~v~~f~~l~~~~g~~-~~~~~~~-----~~~tv~~ll~~l~~~~~~~-------~~~~~~~~~v~vNg~~v~----~~~   63 (80)
T cd00754           1 VKVLYFARLREAAGKD-EEELELP-----EGATVGELLDALEARYPGL-------LEELLARVRIAVNGEYVR----LDT   63 (80)
T ss_pred             CEEEEeHHHHHHhCCc-eEEEECC-----CCCcHHHHHHHHHHHCchH-------HHhhhhcEEEEECCeEcC----CCc
Confidence            6899999999999975 4678887     6899999999999999875       456778999999999998    589


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+||||++||
T Consensus        64 ~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          64 PLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             ccCCCCEEEEeCCCCCC
Confidence            99999999999999998

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PRK11130 moaD molybdopterin synthase small subunit; Provisional

Probab=99.86  E-value=3.5e-21  Score=121.26  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      +|||+|||.||+++|.+ +  ++++.    +++||++|++.|.++||... ..+. .++    +.+.||++-+    +.+
T Consensus         1 ~v~V~~Fa~lre~~g~~-~--~~v~~----~~~tv~~l~~~L~~~~~~~~-~~~~-~~~----~~~aVN~~~~----~~~   63 (81)
T PRK11130          1 MIKVLFFAQVRELVGTD-A--LELAA----DFPTVEALRQHLAQKGDRWA-LALE-DGK----LLAAVNQTLV----SFD   63 (81)
T ss_pred             CEEEEEeHHHHHHhCCc-e--EEecC----CCCCHHHHHHHHHHhCccHH-hhhc-CCC----EEEEECCEEc----CCC
Confidence            48999999999999964 3  44542    47899999999999998863 3333 333    5689999543    579


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||+|+|||||+||
T Consensus        64 ~~l~dgDeVai~PPVsGG   81 (81)
T PRK11130         64 HPLTDGDEVAFFPPVTGG   81 (81)
T ss_pred             CCCCCCCEEEEeCCCCCC
Confidence            999999999999999998

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=99.85  E-value=5e-21  Score=119.88  Aligned_cols=80  Identities=21%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |||+|||.||+.+|+. +.+++++.    +++|+++|++.|.++||+    ++.    .++.++|+||++.+.    .+|
T Consensus         1 v~V~~fa~lr~~~g~~-~~~~~~~~----~~~tv~~L~~~L~~~~p~----l~~----~~~~~~v~vn~~~v~----~~~   63 (80)
T TIGR01682         1 IKVLYFARLREQAGTD-EETLELPD----ESTTVGELKEHLAKEGPE----LAA----SRGQVMVAVNEEYVT----DDA   63 (80)
T ss_pred             CEEEEeHHHHHHhCCC-eEEEECCC----CCcCHHHHHHHHHHhCch----hhh----hccceEEEECCEEcC----CCc
Confidence            6899999999999974 45788883    359999999999999984    332    356899999999987    389


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+||||++||
T Consensus        64 ~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        64 LLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             CcCCCCEEEEeCCCCCC
Confidence            99999999999999998

The C-terminal Gly-Gly of this model is critical to function.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=99.83  E-value=1.3e-20  Score=115.91  Aligned_cols=77  Identities=27%  Similarity=0.346  Sum_probs=70.9

Q ss_pred             EEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCcc
Q 034276            5 LEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTL   84 (99)
Q Consensus         5 V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L   84 (99)
                      |+|+|.+++++| +.  +++++     +++||++|++.|.++||...         .++.+.|+|||+.++. ++.+|+|
T Consensus         1 V~~fg~~~~~~g-~~--~~~~~-----~~~tv~~ll~~l~~~~p~~~---------~~~~~~v~vN~~~v~~-~~~~~~l   62 (77)
T PF02597_consen    1 VKFFGELREIAG-EE--EIEVP-----EGSTVRDLLEALAERYPELA---------LRDRVAVAVNGEIVPD-DGLDTPL   62 (77)
T ss_dssp             EEETTHHHHHHT-EE--EEEES-----STSBHHHHHHHHCHHTGGGH---------TTTTEEEEETTEEEGG-GTTTSBE
T ss_pred             CEEChhHHHHhC-Ce--EEecC-----CCCcHHHHHHHHHhhccccc---------cCccEEEEECCEEcCC-ccCCcCc
Confidence            799999999999 43  56677     79999999999999999866         6779999999999999 9999999


Q ss_pred             CCCCEEEEEecCCCC
Q 034276           85 EEKDVVVFISTLHGG   99 (99)
Q Consensus        85 ~dgD~V~i~p~v~GG   99 (99)
                      ++||+|+||||++||
T Consensus        63 ~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   63 KDGDEVAILPPVSGG   77 (77)
T ss_dssp             ETTEEEEEEESTSTS
T ss_pred             CCCCEEEEECCCCCC
Confidence            999999999999998

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]

Probab=99.79  E-value=2.5e-19  Score=113.87  Aligned_cols=84  Identities=17%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      +|+|+|||.+|+.+|+.. .+++.+.    .+.|+++|.+.+.++++.....+..         .+++|..+++.+.+++
T Consensus         1 ~v~V~~fA~lre~~g~~~-~~~~~~~----~~~tv~~L~~~l~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~   66 (84)
T COG1977           1 MVKVKYFAALREAAGKDE-EELEGLT----VGATVGELEELLPKEGERWLLALED---------NIVVNAANNEFLVGLD   66 (84)
T ss_pred             CeEEEEehhHHHHhCCCc-eeeeccc----HHHHHHHHHHHHHhhhhhHHhccCc---------cceEEeeeceeecccc
Confidence            589999999999999754 3444231    3667777777766655543323221         5778888899999999


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||+|+||||++||
T Consensus        67 t~L~dGDeVa~~PPVsGG   84 (84)
T COG1977          67 TPLKDGDEVAFFPPVSGG   84 (84)
T ss_pred             ccCCCCCEEEEeCCCCCC
Confidence            999999999999999998

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=99.27  E-value=1.6e-11  Score=73.72  Aligned_cols=57  Identities=21%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .++++     ++.|+.++++.+.-                ++.+.+.+|++-|...+..+|.|++||+|.||||++||
T Consensus         9 ~~~~~-----~~~tl~~ll~~l~~----------------~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          9 TLSLP-----DGATVADALAAYGA----------------RPPFAVAVNGDFVARTQHAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             EEECC-----CCCcHHHHHHhhCC----------------CCCeEEEECCEEcCchhcccccCCCCCEEEEEeeccCC
Confidence            36777     68999999997731                12467999999998777889999999999999999998

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=99.24  E-value=1.6e-11  Score=74.12  Aligned_cols=58  Identities=26%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .++++     ++.|+.+|++.|.-  +             ...+.|.+||+-+...++.+|+|++||+|.||||++||
T Consensus         8 ~~~~~-----~~~tv~~ll~~l~~--~-------------~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           8 PREVE-----EGATLAELLEELGL--D-------------PRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             EEEcC-----CCCCHHHHHHHcCC--C-------------CCcEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence            36777     68899999998851  1             24788999999999888889999999999999999998

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=99.19  E-value=1.3e-10  Score=71.34  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=52.8

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      ++|++.|.+.     .  .+++++     ++.|++|+++.|.  +        ..     ..+.|.+|++-+.    .+|
T Consensus         5 m~v~vng~~~-----~--~~~~~~-----~~~tv~~ll~~l~--~--------~~-----~~v~v~vNg~iv~----~~~   53 (70)
T PRK08364          5 IRVKVIGRGI-----E--KEIEWR-----KGMKVADILRAVG--F--------NT-----ESAIAKVNGKVAL----EDD   53 (70)
T ss_pred             EEEEEecccc-----c--eEEEcC-----CCCcHHHHHHHcC--C--------CC-----ccEEEEECCEECC----CCc
Confidence            7888888752     2  257777     6899999999882  1        11     3688999999873    489


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      .|++||+|.|||+++||
T Consensus        54 ~l~~gD~Veii~~V~GG   70 (70)
T PRK08364         54 PVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             CcCCCCEEEEEccccCC
Confidence            99999999999999998

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=99.12  E-value=1.6e-10  Score=69.53  Aligned_cols=58  Identities=31%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .++++     ++.|+.+||+.|.-          .     ...+.|.+|++-+...+..+|.|++||+|.||||++||
T Consensus         7 ~~~~~-----~~~tv~~ll~~l~~----------~-----~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         7 PVEVE-----DGLTLAALLESLGL----------D-----PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             EEEcC-----CCCcHHHHHHHcCC----------C-----CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence            36677     68899999997741          1     14788999999998777888999999999999999998

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PRK06437 hypothetical protein; Provisional

Probab=98.94  E-value=3.1e-09  Score=64.85  Aligned_cols=55  Identities=20%  Similarity=0.418  Sum_probs=45.4

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+++++     ++.|++|||+.|.          +..     ..+.|.+||+-+.    .+|.|++||+|.|||+++||
T Consensus        13 ~~~~i~-----~~~tv~dLL~~Lg----------i~~-----~~vaV~vNg~iv~----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437         13 KTIEID-----HELTVNDIIKDLG----------LDE-----EEYVVIVNGSPVL----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             eEEEcC-----CCCcHHHHHHHcC----------CCC-----ccEEEEECCEECC----CceEcCCCCEEEEEecccCC
Confidence            467787     7899999998772          121     2667889999986    68999999999999999998

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=98.94  E-value=2.9e-09  Score=64.12  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=43.6

Q ss_pred             cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ..|+.+|++.+.          +..     ..+.|.+|++=+......+|+|++||+|.||||++||
T Consensus        14 ~~tl~~Ll~~l~----------~~~-----~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488         14 ATTLALLLAELD----------YEG-----NWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             cCcHHHHHHHcC----------CCC-----CeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence            369999998771          111     2678999999998777889999999999999999998

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=98.88  E-value=4.7e-09  Score=63.56  Aligned_cols=57  Identities=14%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.+||+.+.-.+               +++.|.+|++=+.--+..+|.|++||+|.|+|+++||
T Consensus        10 ~~~~-----~~~tl~~ll~~l~~~~---------------~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053         10 MQCA-----AGQTVHELLEQLNQLQ---------------PGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             EEcC-----CCCCHHHHHHHcCCCC---------------CcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence            6677     6789999998653211               3588999999888777788999999999999999998

>KOG3474 consensus Molybdopterin converting factor, small subunit [Energy production and conversion]

Probab=98.88  E-value=1.7e-09  Score=67.45  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      .|||-|||..++++|+ +...+++|     ++++-.+.++.+.++||.+.+        ++.-+++.+|.+--.  .|..
T Consensus         3 eIKVL~Fa~A~eLtG~-~d~ai~~P-----e~s~~ee~~deil~kfPaLee--------i~k~mmLAldeEYan--p~D~   66 (84)
T KOG3474|consen    3 EIKVLFFAEACELTGK-PDEAIDFP-----EESDTEECLDEILEKFPALEE--------IEKCMMLALDEEYAN--PGDR   66 (84)
T ss_pred             eEEEeeehhhHHhcCC-chhhccCC-----CCCCHHHHHHHHHHhCccHHH--------HHHHhheehhhhhcC--CCCc
Confidence            6999999999999997 45789999     899999999999999998643        344455566654432  2455


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      ..|..=|+|+|+||++||
T Consensus        67 ~~l~~~dEiAiIPPiSGG   84 (84)
T KOG3474|consen   67 AELQHFDEIAIIPPISGG   84 (84)
T ss_pred             eeeEeeceeeEcCCCCCC
Confidence            688899999999999998

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=98.85  E-value=1.1e-08  Score=64.85  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=55.8

Q ss_pred             CeEEEEEcchHhhhcCCeeE---EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKV---HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~---~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      -.|+++|+|.|+.++..++.   ..++++     +++||+++++.|-=  |  ..++         + .|+|||+.+.+ 
T Consensus         2 ~~i~~rf~~~L~~flp~~~r~~~~~~~~~-----~~~tvkd~IEsLGV--P--~tEV---------~-~i~vNG~~v~~-   61 (81)
T PF14451_consen    2 PTITFRFYAELNDFLPPERRGGPFTHPFD-----GGATVKDVIESLGV--P--HTEV---------G-LILVNGRPVDF-   61 (81)
T ss_pred             CEEEEEEchHHhhhcChhhcCCceEEecC-----CCCcHHHHHHHcCC--C--hHHe---------E-EEEECCEECCC-
Confidence            06999999999999876553   344555     78999999998842  1  2222         1 38899999876 


Q ss_pred             CCccCccCCCCEEEEEecC
Q 034276           78 GQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~v   96 (99)
                         ++.+++||.|+++|.-
T Consensus        62 ---~~~~~~Gd~v~V~P~~   77 (81)
T PF14451_consen   62 ---DYRLKDGDRVAVYPVF   77 (81)
T ss_pred             ---cccCCCCCEEEEEecc
Confidence               7999999999999964

>PRK01777 hypothetical protein; Validated

Probab=98.75  E-value=3.7e-08  Score=64.10  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|-|...=+     .....+++|     +|+||+|+|+.+.  .+....++-     +. .-.++|||+.+.    +
T Consensus         4 i~v~V~ya~~~~-----~~~~~l~vp-----~GtTv~dal~~sg--i~~~~pei~-----~~-~~~vgI~Gk~v~----~   61 (95)
T PRK01777          4 IRVEVVYALPER-----QYLQRLTLQ-----EGATVEEAIRASG--LLELRTDID-----LA-KNKVGIYSRPAK----L   61 (95)
T ss_pred             eEEEEEEECCCc-----eEEEEEEcC-----CCCcHHHHHHHcC--CCccCcccc-----cc-cceEEEeCeECC----C
Confidence            567777764422     223568899     8999999999873  222222221     11 235899999985    4


Q ss_pred             cCccCCCCEEEEEecCC
Q 034276           81 DTTLEEKDVVVFISTLH   97 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~   97 (99)
                      +++|++||.|.||||+.
T Consensus        62 d~~L~dGDRVeIyrPL~   78 (95)
T PRK01777         62 TDVLRDGDRVEIYRPLL   78 (95)
T ss_pred             CCcCCCCCEEEEecCCC
Confidence            89999999999999974

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=98.74  E-value=2.8e-08  Score=59.70  Aligned_cols=57  Identities=32%  Similarity=0.299  Sum_probs=45.6

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.++|+.+.  +        .     ...+.|.+||+=+..-...+|+|++||+|.|||+++||
T Consensus        10 ~~~~-----~~~tl~~lL~~l~--~--------~-----~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~vgGG   66 (66)
T PRK05659         10 RELP-----DGESVAALLAREG--L--------A-----GRRVAVEVNGEIVPRSQHASTALREGDVVEIVHALGGG   66 (66)
T ss_pred             EEcC-----CCCCHHHHHHhcC--C--------C-----CCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence            5677     7899999998762  1        1     12555889997777667789999999999999999998

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=98.68  E-value=1.1e-07  Score=58.40  Aligned_cols=57  Identities=33%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.|||+.|.          |..     +.+.+.+||.=+.--+..++.|++||+|.|+.+++||
T Consensus        12 ~e~~-----~~~tv~dLL~~l~----------~~~-----~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG   68 (68)
T COG2104          12 VEIA-----EGTTVADLLAQLG----------LNP-----EGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG   68 (68)
T ss_pred             EEcC-----CCCcHHHHHHHhC----------CCC-----ceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence            6677     6799999999874          222     3788999999888777889999999999999999998

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=98.55  E-value=2e-07  Score=56.32  Aligned_cols=56  Identities=25%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+++     ++.|+.+||+.+.  +        .     ...|.|.+|+.=+...+.. +.|++||+|.||++++||
T Consensus        10 ~~~~-----~~~tl~~ll~~l~--~--------~-----~~~vav~~N~~iv~r~~~~-~~L~~gD~ieIv~~VgGG   65 (65)
T PRK05863         10 VEVD-----EQTTVAALLDSLG--F--------P-----EKGIAVAVDWSVLPRSDWA-TKLRDGARLEVVTAVQGG   65 (65)
T ss_pred             EEcC-----CCCcHHHHHHHcC--C--------C-----CCcEEEEECCcCcChhHhh-hhcCCCCEEEEEeeccCC
Confidence            5566     6789999999762  1        1     2378899999977666554 469999999999999998

>PRK07440 hypothetical protein; Provisional

Probab=98.52  E-value=2.6e-07  Score=56.82  Aligned_cols=57  Identities=21%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.+||+.+.          +..     .+|.|.+|++=+.-.+..+|.|++||.|.|++.++||
T Consensus        14 ~~~~-----~~~tl~~lL~~l~----------~~~-----~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v~GG   70 (70)
T PRK07440         14 RTCS-----SGTSLPDLLQQLG----------FNP-----RLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIVGGG   70 (70)
T ss_pred             EEcC-----CCCCHHHHHHHcC----------CCC-----CeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence            5566     6899999998552          111     3889999999999888999999999999999999998

>PF06805 Lambda_tail_I: Bacteriophage lambda tail assembly protein I; InterPro: IPR010654 This family consists of several Bacteriophage lambda tail assembly protein I and related phage and bacterial sequences

Probab=98.51  E-value=5.8e-07  Score=56.95  Aligned_cols=81  Identities=11%  Similarity=-0.057  Sum_probs=60.3

Q ss_pred             CeEEEEEcchHh-hhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC
Q 034276            1 MQLTLEFGGGLE-LLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ   79 (99)
Q Consensus         1 M~v~V~f~a~l~-~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g   79 (99)
                      |-.+|+++|.|. ..||..    +.++      ..|..+++.+|+...|++++.        ..-.+.-.||++...-+.
T Consensus         1 ~~~tI~L~G~L~~~~fGr~----~~l~------v~t~~Eai~AL~~~~pGf~~~--------~~v~~~~~ng~~~l~~~~   62 (82)
T PF06805_consen    1 TMRTIRLYGPLGPRRFGRR----HRLA------VDTPAEAIRALCVQLPGFEQF--------FAVFIGKRNGEDELEARW   62 (82)
T ss_pred             CcEEEEEeCcCcCccceEE----EEec------cCCHHHHHHHHHhcChhhhhh--------cceEEeeeCChhhhhhhh
Confidence            346899999998 888842    3343      579999999999999988665        223345667666542233


Q ss_pred             ccCccCCCCEEEEEecCCCC
Q 034276           80 LDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        80 ~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+..+++|++|.|.|-+.|+
T Consensus        63 ~~~~~~~g~~I~IvPvi~Gs   82 (82)
T PF06805_consen   63 HDERPKGGSVIRIVPVIAGS   82 (82)
T ss_pred             hcccCCCCCEEEEEEecCCC
Confidence            33689999999999999996

Members of this family are typically around 200 residues in length. The function of this family is unknown.

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=98.41  E-value=7.3e-07  Score=54.27  Aligned_cols=57  Identities=21%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             EEeCCCCCCCc-chHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEK-LIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~-~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+++     ++ +||.|||+.|.          +.     ...+.|.+|++=+.-.+..+|.|++||.|.|++.++||
T Consensus        10 ~~~~-----~~~~tv~~lL~~l~----------~~-----~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~VgGG   67 (67)
T PRK07696         10 IEVP-----ESVKTVAELLTHLE----------LD-----NKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTFVGGG   67 (67)
T ss_pred             EEcC-----CCcccHHHHHHHcC----------CC-----CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence            5566     55 68999998652          11     12778999999998888889999999999999999998

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=98.36  E-value=9.8e-07  Score=56.21  Aligned_cols=53  Identities=15%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++.|+.+||+.|.          +.     ...+.|.+||+=|.--+..+|.|++||.|.|+.+++||
T Consensus        32 ~~~tl~~LL~~l~----------~~-----~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~VgGG   84 (84)
T PRK06083         32 ISSSLAQIIAQLS----------LP-----ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAIAGG   84 (84)
T ss_pred             CCCcHHHHHHHcC----------CC-----CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence            6789999999652          11     12778999999998888999999999999999999998

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=98.17  E-value=3.7e-06  Score=65.17  Aligned_cols=57  Identities=26%  Similarity=0.179  Sum_probs=48.4

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.|||+.+.          +..     ..|.|.+||+-+...+..+|+|++||+|.||++|+||
T Consensus        10 ~el~-----e~~TL~dLL~~L~----------i~~-----~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~VgGG   66 (326)
T PRK11840         10 RQVP-----AGLTIAALLAELG----------LAP-----KKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGG   66 (326)
T ss_pred             EecC-----CCCcHHHHHHHcC----------CCC-----CeEEEEECCEECCHHHcCccccCCCCEEEEEEEecCC
Confidence            6677     6889999998762          111     2788999999999888999999999999999999998

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function

Probab=97.47  E-value=0.00093  Score=42.65  Aligned_cols=72  Identities=15%  Similarity=0.137  Sum_probs=40.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHH--HHHhcCcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSW--VGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~--L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|-|..+ +    .+....+++|     +|+||.|+++.  |.+.||+..-    +  ..+    +=|=|+-+    
T Consensus         1 i~VeV~yA~p-~----~q~~~~l~vp-----~GtTv~~Ai~~Sgi~~~~p~idl----~--~~~----vGIfGk~~----   56 (84)
T PF03658_consen    1 IRVEVAYALP-E----RQVILTLEVP-----EGTTVAQAIEASGILEQFPEIDL----E--KNK----VGIFGKLV----   56 (84)
T ss_dssp             EEEEEEEEET-T----CEEEEEEEEE-----TT-BHHHHHHHHTHHHH-TT--T----T--TSE----EEEEE-S-----
T ss_pred             CEEEEEEECC-C----eEEEEEEECC-----CcCcHHHHHHHcCchhhCcccCc----c--cce----eeeeeeEc----
Confidence            7888887644 2    2344678999     89999999986  5666776421    1  111    22234444    


Q ss_pred             CccCccCCCCEEEEEecC
Q 034276           79 QLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v   96 (99)
                      .++++|++||.|-|+=|+
T Consensus        57 ~~d~~L~~GDRVEIYRPL   74 (84)
T PF03658_consen   57 KLDTVLRDGDRVEIYRPL   74 (84)
T ss_dssp             -TT-B--TT-EEEEE-S-
T ss_pred             CCCCcCCCCCEEEEeccC
Confidence            368999999999999775

; PDB: 2HJ1_B.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=97.05  E-value=0.004  Score=38.47  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+-..      |+  ..+++++     ..+||++|=+.++++.  |..+-+|... |+      ++-++    .| 
T Consensus         2 m~I~Vk~~~------G~--~~~l~v~-----~~~TV~~LK~~I~~~~~~~~~~qrL~~~-Gk------~L~d~----~L-   56 (78)
T cd01804           2 MNLNIHSTT------GT--RFDLSVP-----PDETVEGLKKRISQRLKVPKERLALLHR-ET------RLSSG----KL-   56 (78)
T ss_pred             eEEEEEECC------CC--EEEEEEC-----CcCHHHHHHHHHHHHhCCChHHEEEEEC-Cc------CCCCC----cH-
Confidence            788887764      33  3568888     5789999999998774  3333344322 33      12222    13 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++|+.|.+++++-||
T Consensus        57 -~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804          57 -QDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             -HHcCCCCCCEEEEEeecccc
Confidence             35789999999999999887

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=97.04  E-value=0.0046  Score=37.08  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=49.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||+++-+.++++.  |...-+|+. +|+      ++-++..   + 
T Consensus         1 m~i~v~~~~------g~--~~~~~v~-----~~~tv~~lK~~i~~~~g~~~~~qrL~~-~g~------~L~d~~t---l-   56 (76)
T cd01806           1 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDDKT---A-   56 (76)
T ss_pred             CEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHhHhhCCChhhEEEEE-CCe------EccCCCC---H-
Confidence            889998874      32  3467787     5789999999998875  222223332 222      2222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.+++...||
T Consensus        57 -~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806          57 -ADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             -HHcCCCCCCEEEEEEEccCC
Confidence             35789999999999999887

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd00196 UBQ Ubiquitin-like proteins

Probab=96.83  E-value=0.0087  Score=32.26  Aligned_cols=59  Identities=22%  Similarity=0.112  Sum_probs=41.2

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc-cCccCCCCEEEEEec
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFIST   95 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~-~t~L~dgD~V~i~p~   95 (99)
                      ..+.++     ...|++++++.++++++..           .....+++|+......... ++.+.+|++|.+.|+
T Consensus        10 ~~~~~~-----~~~tv~~l~~~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   69 (69)
T cd00196          10 VELLVP-----SGTTVADLKEKLAKKLGLP-----------PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVPR   69 (69)
T ss_pred             EEEEcC-----CCCcHHHHHHHHHHHHCcC-----------hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            456666     5799999999999987511           1134456666655443322 679999999999874

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01803 Ubiquitin Ubiquitin

Probab=96.83  E-value=0.0067  Score=36.32  Aligned_cols=74  Identities=11%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |+  .+.++++     ...||.++-+.+.+..  |...-.|+. +|+      ++-++.   .+ 
T Consensus         1 m~i~v~~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~g~~~~~q~L~~-~g~------~L~d~~---~L-   56 (76)
T cd01803           1 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   56 (76)
T ss_pred             CEEEEEcCC------CC--EEEEEEC-----CcCcHHHHHHHHHHHhCCCHHHeEEEE-CCE------ECCCCC---cH-
Confidence            888888775      32  3467787     5689999999998865  333334432 233      122332   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.+.....||
T Consensus        57 -~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803          57 -SDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             -HHcCCCCCCEEEEEEEccCC
Confidence             35789999999999999987

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>COG4723 Phage-related protein, tail component [Function unknown]

Probab=96.67  E-value=0.0017  Score=47.02  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEE-EcCccceecCCcc
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVL-VNDCDWELSGQLD   81 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~il-vNg~di~~l~g~~   81 (99)
                      .+|.+||.| .-||.  .+.+.|.        |..|.|++|+-..|.++..+=  ++.  ..+.|. +....+..-..+.
T Consensus         6 ~~I~L~G~L-~rFGR--~~~l~V~--------t~aEAi~AL~~q~pgfr~~m~--~~~--y~~~i~~~~~~~~~v~~~~~   70 (198)
T COG4723           6 ARICLYGDL-QRFGR--RLSLYVN--------TAAEAIRALSLQMPGFRRQMN--EGW--YQIRIAGVDTAPENVTASLH   70 (198)
T ss_pred             eEEEecChH-HHhhh--HHhhhhC--------CHHHHHHHHHhcChhHHHHHh--cce--eeeEeeccccCcccccHhHh
Confidence            589999999 88994  3444443        799999999999999988773  222  233332 2222222233455


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      ..+.+|++|.|.|-++|.
T Consensus        71 e~~~~g~~I~iVPrlaGa   88 (198)
T COG4723          71 ESLGPGAVIHIVPRLAGA   88 (198)
T ss_pred             ccCCCCcEEEecceeccC
Confidence            578899999999999984

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []

Probab=96.38  E-value=0.008  Score=35.52  Aligned_cols=49  Identities=27%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      .++|     +|+|+.|+...+...   +.+          ..+...|||+.|.    ++++|++||.|.|+
T Consensus        11 ~~~~-----~g~T~~d~A~~I~~~---l~~----------~~~~A~Vng~~vd----l~~~L~~~d~v~ii   59 (60)
T PF02824_consen   11 KELP-----EGSTVLDVAYSIHSS---LAK----------RAVAAKVNGQLVD----LDHPLEDGDVVEII   59 (60)
T ss_dssp             EEEE-----TTBBHHHHHHHHSHH---HHH----------CEEEEEETTEEEE----TTSBB-SSEEEEEE
T ss_pred             eeCC-----CCCCHHHHHHHHCHH---HHh----------heeEEEEcCEECC----CCCCcCCCCEEEEE
Confidence            4577     799999999988652   221          2455789998875    58999999999987

The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response

Probab=95.46  E-value=0.067  Score=30.34  Aligned_cols=49  Identities=22%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      ++++     ++.|+.++++.+..   ...          +..+.+.+||+.++    ++++|.+||+|.++
T Consensus        11 ~~~~-----~~~t~~~~~~~~~~---~~~----------~~~va~~vng~~vd----l~~~l~~~~~ve~v   59 (60)
T cd01668          11 IELP-----AGATVLDFAYAIHT---EIG----------NRCVGAKVNGKLVP----LSTVLKDGDIVEII   59 (60)
T ss_pred             EEcC-----CCCCHHHHHHHHCh---Hhh----------hheEEEEECCEECC----CCCCCCCCCEEEEE
Confidence            5677     78999998875532   111          12456789998865    46999999999876

RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=95.32  E-value=0.077  Score=34.64  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=42.1

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.++++     ...||.++=+.+.++.  |....+|+. .|+      +|-+++.+     .++.+++|+.|.+..++-
T Consensus        39 ~~~leV~-----~~~TV~~lK~kI~~~~gip~~~QrLi~-~Gk------~L~D~~tL-----~dy~I~~~stL~l~~~l~  101 (103)
T cd01802          39 CFELRVS-----PFETVISVKAKIQRLEGIPVAQQHLIW-NNM------ELEDEYCL-----NDYNISEGCTLKLVLAMR  101 (103)
T ss_pred             EEEEEeC-----CCCcHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCCcH-----HHcCCCCCCEEEEEEecC
Confidence            3567787     5789999999998875  333333332 222      23333322     357899999999999998


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus       102 GG  103 (103)
T cd01802         102 GG  103 (103)
T ss_pred             CC
Confidence            87

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2

Probab=95.31  E-value=0.028  Score=34.91  Aligned_cols=56  Identities=23%  Similarity=0.270  Sum_probs=34.4

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccc-cccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERP-EMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~-~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      -+.+|     .|+||.|+...+-........ .+..       +-.+=+||+.+    |++.+|+|||.|.|+
T Consensus        18 ~liL~-----~GaTV~D~a~~iH~di~~~f~~A~v~-------g~s~~~~gq~V----gl~~~L~d~DvVeI~   74 (75)
T cd01666          18 PVILR-----RGSTVEDVCNKIHKDLVKQFKYALVW-------GSSVKHSPQRV----GLDHVLEDEDVVQIV   74 (75)
T ss_pred             CEEEC-----CCCCHHHHHHHHHHHHHHhCCeeEEe-------ccCCcCCCeEC----CCCCEecCCCEEEEe
Confidence            36677     799999999987643211111 1100       00111355554    679999999999987

DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>PTZ00044 ubiquitin; Provisional

Probab=95.20  E-value=0.11  Score=31.29  Aligned_cols=74  Identities=9%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+-.      -|+  .+.++++     ...||.++=+.++++..  ...-+|+. +|+.      |-|+..   + 
T Consensus         1 m~i~vk~~------~G~--~~~l~v~-----~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~~------L~d~~~---l-   56 (76)
T PTZ00044          1 MQILIKTL------TGK--KQSFNFE-----PDNTVQQVKMALQEKEGIDVKQIRLIY-SGKQ------MSDDLK---L-   56 (76)
T ss_pred             CEEEEEeC------CCC--EEEEEEC-----CCCcHHHHHHHHHHHHCCCHHHeEEEE-CCEE------ccCCCc---H-
Confidence            77777765      332  3467777     57899999999988773  33334442 2332      333333   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.+..+.-||
T Consensus        57 -~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044         57 -SDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             -HHcCCCCCCEEEEEEEccCC
Confidence             35689999999999998887

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin

Probab=95.07  E-value=0.13  Score=28.23  Aligned_cols=49  Identities=24%  Similarity=0.215  Sum_probs=35.3

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      ++++     +++|+.++++.+...++             +..+...+||+-+.    ++++|.+||+|.|+
T Consensus        11 ~~~~-----~g~t~~~~~~~~~~~~~-------------~~~~~~~vn~~~~~----l~~~l~~~~~i~~i   59 (60)
T cd01616          11 VELP-----KGATAMDFALKIHTDLG-------------KGFIGALVNGQLVD----LSYTLQDGDTVSIV   59 (60)
T ss_pred             EEcC-----CCCCHHHHHHHHHHHHH-------------hheEEEEECCEECC----CCcCcCCCCEEEEe
Confidence            5577     68999998887654221             12455778986643    57999999999987

TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=94.75  E-value=0.15  Score=30.68  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCc----ccccccccCCccccceEEEEcCcccee
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIK----ERPEMFMKGDSVRPGVLVLVNDCDWEL   76 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~----~~~~l~~~~g~l~~~v~ilvNg~di~~   76 (99)
                      |+|+|+..++        +.+.++++     ...||.++-+.+.+...-    .+-.++. +|+      +|-++..   
T Consensus         1 m~i~vk~~~g--------~~~~l~v~-----~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-~G~------~L~d~~~---   57 (77)
T cd01805           1 MKITFKTLKQ--------QTFPIEVD-----PDDTVAELKEKIEEEKGCDYPPEQQKLIY-SGK------ILKDDTT---   57 (77)
T ss_pred             CEEEEEeCCC--------CEEEEEEC-----CCCcHHHHHHHHHHhhCCCCChhHeEEEE-CCE------EccCCCC---
Confidence            8899988643        23567887     568999999999886532    1212221 122      2222222   


Q ss_pred             cCCccCccCCCCEEEEE
Q 034276           77 SGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        77 l~g~~t~L~dgD~V~i~   93 (99)
                      +  .++.+++||.|.++
T Consensus        58 L--~~~~i~~~~~i~~~   72 (77)
T cd01805          58 L--EEYKIDEKDFVVVM   72 (77)
T ss_pred             H--HHcCCCCCCEEEEE
Confidence            2  35688999988764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=94.61  E-value=0.19  Score=30.26  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.||-        ++  .+.++++     +..||.++=+.+++..  |...-.|.. .|+      +|-|++-   + 
T Consensus         1 mqi~vk~--------~~--~~~l~v~-----~~~tV~~lK~~i~~~~gip~~~q~Li~-~Gk------~L~D~~t---L-   54 (74)
T cd01793           1 MQLFVRA--------QN--THTLEVT-----GQETVSDIKAHVAGLEGIDVEDQVLLL-AGV------PLEDDAT---L-   54 (74)
T ss_pred             CEEEEEC--------CC--EEEEEEC-----CcCcHHHHHHHHHhhhCCCHHHEEEEE-CCe------ECCCCCC---H-
Confidence            8888884        12  3567887     5789999999998765  332223322 222      2334433   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++++.|.+..++-||
T Consensus        55 -~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793          55 -GQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             -HHcCCCCCCEEEEEEecCCC
Confidence             35789999999999999887

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.03  E-value=0.27  Score=29.12  Aligned_cols=59  Identities=10%  Similarity=0.066  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~   93 (99)
                      .+.+.+.     ...+++.|++..+++..-...          ..+.++.+|+.++.-+- .+.-+++||.|.++
T Consensus        12 ~~~~~v~-----~~~~~~~l~~~~~~~~~i~~~----------~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen   12 EIKFKVK-----PTTTVSKLIEKYCEKKGIPPE----------ESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEE-----TTSCCHHHHHHHHHHHTTTT-----------TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHhhCCCcc----------ceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            4567777     678999999999986642221          24556667766543221 12368999998764

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=93.97  E-value=0.71  Score=28.82  Aligned_cols=64  Identities=14%  Similarity=0.055  Sum_probs=44.5

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G   98 (99)
                      .+.+.+.     ...|++.|.++++++..-..           ..+-.+-||+.++.-.- .+.-+++||.|.++-..-|
T Consensus        23 ~~~~~v~-----~~~~l~~l~~~y~~~~gi~~-----------~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G   86 (87)
T cd01763          23 EVFFKIK-----RSTPLKKLMEAYCQRQGLSM-----------NSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG   86 (87)
T ss_pred             EEEEEEc-----CCCHHHHHHHHHHHHhCCCc-----------cceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence            3567777     57899999999998653211           13335557766654322 3447899999999988888


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        87 G   87 (87)
T cd01763          87 G   87 (87)
T ss_pred             C
Confidence            7

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=93.90  E-value=0.36  Score=28.34  Aligned_cols=68  Identities=12%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|++.|         +.++++++     ...||.+|-+.+++..  |..+.+|+.. |..      +-+.   ..+ 
T Consensus         1 i~i~vk~~g---------~~~~i~v~-----~~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~------l~d~---~~L-   55 (71)
T cd01812           1 IRVRVKHGG---------ESHDLSIS-----SQATFGDLKKMLAPVTGVEPRDQKLIFK-GKE------RDDA---ETL-   55 (71)
T ss_pred             CEEEEEECC---------EEEEEEEC-----CCCcHHHHHHHHHHhhCCChHHeEEeeC-Ccc------cCcc---CcH-
Confidence            467777642         23467787     5789999999998875  3333334322 221      1111   122 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++.+++|+.|.++.
T Consensus        56 -~~~~i~~g~~l~v~~   70 (71)
T cd01812          56 -DMSGVKDGSKVMLLE   70 (71)
T ss_pred             -HHcCCCCCCEEEEec
Confidence             356789999998763

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea

Probab=93.76  E-value=0.24  Score=30.74  Aligned_cols=51  Identities=16%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      +.+|     .++|+.|+-..+-......    |..      - +...|++.    -|++++|++||.|.|+
T Consensus        25 ~~l~-----~GaTv~D~A~~IHtdi~~~----f~~------A-i~~k~~~~----vg~~~~L~dgDvV~Ii   75 (76)
T cd01669          25 FLLP-----KGSTARDLAYAIHTDIGDG----FLH------A-IDARTGRR----VGEDYELKHRDVIKIV   75 (76)
T ss_pred             EEEC-----CCCCHHHHHHHHHHHHHhc----cee------e-EEeeCCEE----eCCCcEecCCCEEEEe
Confidence            5677     6999999988775533221    110      0 11235543    4789999999999997

Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=93.22  E-value=0.41  Score=28.75  Aligned_cols=69  Identities=19%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |+  ...++++     ...||+++-+.++++.  |....+|+. .|+      .|-|++.+    
T Consensus         1 m~i~vk~~~------G~--~~~l~v~-----~~~tV~~lK~~i~~~~gi~~~~q~L~~-~G~------~L~d~~~L----   56 (74)
T cd01807           1 MFLTVKLLQ------GR--ECSLQVS-----EKESVSTLKKLVSEHLNVPEEQQRLLF-KGK------ALADDKRL----   56 (74)
T ss_pred             CEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCCCCH----
Confidence            888888763      32  3467787     5789999999998875  333334443 232      23344332    


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.++.
T Consensus        57 -~~~~i~~~~~l~l~~   71 (74)
T cd01807          57 -SDYSIGPNAKLNLVV   71 (74)
T ss_pred             -HHCCCCCCCEEEEEE
Confidence             357899999987764

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=92.35  E-value=0.41  Score=37.98  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc-----CcccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL-----IKERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~-----~~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+||.+.      |+  .+.+++.     ...||.+|-+.|.+..     |..+-+|.. .|+      +|-+++.+ 
T Consensus         1 MkItVKtl~------g~--~~~IeV~-----~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy-~Gk------iL~Dd~tL-   59 (378)
T TIGR00601         1 MTLTFKTLQ------QQ--KFKIDME-----PDETVKELKEKIEAEQGKDAYPVAQQKLIY-SGK------ILSDDKTV-   59 (378)
T ss_pred             CEEEEEeCC------CC--EEEEEeC-----CcChHHHHHHHHHHhhCCCCCChhHeEEEE-CCE------ECCCCCcH-
Confidence            899998753      32  3567787     5789999999998763     333323332 233      33344322 


Q ss_pred             ecCCccCccCCCCEEEEE
Q 034276           76 LSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~   93 (99)
                          .++.|++||.|.++
T Consensus        60 ----~dy~I~e~~~Ivvm   73 (378)
T TIGR00601        60 ----REYKIKEKDFVVVM   73 (378)
T ss_pred             ----HHcCCCCCCEEEEE
Confidence                34678888888776

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=92.18  E-value=1.3  Score=33.24  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             CeEEEEEcchHhhhcCC-eeEEEEEeC-CCCCCCcchHHHHHHHHHHhc-----CcccccccccC--CccccceEEEEcC
Q 034276            1 MQLTLEFGGGLELLCDS-VKVHNVDVV-PPKGSEKLIMKDLLSWVGTNL-----IKERPEMFMKG--DSVRPGVLVLVND   71 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~-~~~~~vev~-~~~~~~~~tv~dll~~L~~~~-----~~~~~~l~~~~--g~l~~~v~ilvNg   71 (99)
                      |+|+++.+-. .. .+. ..-.+++|+ ..   ++.||-|+|.++.++.     +.+   -|...  ..+=-.=-++|||
T Consensus         1 ~~~~~~i~R~-~~-~~~~~~~q~y~v~~~~---~~~tvLd~L~~Ik~~~~~~~~~~l---~fr~sCr~~iCGsCam~ING   72 (250)
T PRK07570          1 MKLTLKIWRQ-KG-PDDKGKFETYEVDDIS---PDMSFLEMLDVLNEQLIEKGEEPV---AFDHDCREGICGMCGLVING   72 (250)
T ss_pred             CeEEEEEEec-CC-CCCCceeEEEEecCCC---CCCcHHHHHHHHHHHhhccCCCCe---eEeccccCCcCCcceeEECC
Confidence            7777775532 11 121 122456666 22   6899999999997754     212   12211  1122244699999


Q ss_pred             ccc-----eecCCccC---ccCCCCEEEEEec
Q 034276           72 CDW-----ELSGQLDT---TLEEKDVVVFIST   95 (99)
Q Consensus        72 ~di-----~~l~g~~t---~L~dgD~V~i~p~   95 (99)
                      +..     ++-  =.|   .+.+|++|.|-|-
T Consensus        73 ~p~~~~~~~LA--C~t~~~~~~~~~~i~iePl  102 (250)
T PRK07570         73 RPHGPDRGTTT--CQLHMRSFKDGDTITIEPW  102 (250)
T ss_pred             ccCCCCcccch--hhhhhhhcCCCCeEEEEEC
Confidence            983     111  012   2456788888774

>TIGR02988 YaaA_near_RecF S4 domain protein YaaA

Probab=91.93  E-value=0.21  Score=28.95  Aligned_cols=23  Identities=30%  Similarity=0.203  Sum_probs=18.9

Q ss_pred             EEEcCccceecCCccCccCCCCEEEE
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      |+|||+-+.   ...+.|+.||+|.|
T Consensus        36 V~VNg~~~~---~~~~~l~~Gd~v~i   58 (59)
T TIGR02988        36 VLVNGELEN---RRGKKLYPGDVIEI   58 (59)
T ss_pred             EEECCEEcc---CCCCCCCCCCEEEe
Confidence            889998764   34689999999985

This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=91.47  E-value=0.5  Score=28.43  Aligned_cols=63  Identities=13%  Similarity=0.017  Sum_probs=41.4

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.+++.     ...||+++=+.+.+..  |.....|+. +|+      +|-+++   .+  .++-+++|+.+.+.++..
T Consensus        10 ~~~l~v~-----~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G~------~L~D~~---tL--~~~~i~~~~tl~l~~~l~   72 (74)
T cd01810          10 SSIYEVQ-----LTQTVATLKQQVSQRERVQADQFWLSF-EGR------PMEDEH---PL--GEYGLKPGCTVFMNLRLR   72 (74)
T ss_pred             EEEEEEC-----CcChHHHHHHHHHHHhCCCHHHeEEEE-CCE------ECCCCC---CH--HHcCCCCCCEEEEEEEcc
Confidence            3567787     5689999999998765  322223332 232      222332   23  357899999999999999


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus        73 gg   74 (74)
T cd01810          73 GG   74 (74)
T ss_pred             CC
Confidence            87

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=91.46  E-value=1.1  Score=26.07  Aligned_cols=69  Identities=14%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |  +.+.++++     ...||.++-+.+.+...  ...-.|+. +|.      ++-+++.   | 
T Consensus         1 i~i~vk~~~------g--~~~~~~v~-----~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~------~L~d~~~---L-   56 (72)
T cd01809           1 IEIKVKTLD------S--QTHTFTVE-----EEITVLDLKEKIAEEVGIPVEQQRLIY-SGR------VLKDDET---L-   56 (72)
T ss_pred             CEEEEEeCC------C--CEEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCE------ECCCcCc---H-
Confidence            778887753      3  23567787     56899999999988753  22223332 232      2223322   2 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.+..
T Consensus        57 -~~~~i~~~~~l~l~~   71 (72)
T cd01809          57 -SEYKVEDGHTIHLVK   71 (72)
T ss_pred             -HHCCCCCCCEEEEEe
Confidence             346789999988764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=91.45  E-value=0.32  Score=28.88  Aligned_cols=25  Identities=32%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      ++.+||-.+.    .+++|++||+|.+++
T Consensus        31 I~I~NGF~~~----~d~~L~e~D~v~~Ik   55 (57)
T PF14453_consen   31 IVILNGFPTK----EDIELKEGDEVFLIK   55 (57)
T ss_pred             EEEEcCcccC----CccccCCCCEEEEEe
Confidence            3678997663    589999999999986

>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]

Probab=90.97  E-value=0.32  Score=30.25  Aligned_cols=52  Identities=23%  Similarity=0.201  Sum_probs=36.7

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEE
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      +-.|+.++|+.+---..+.....|..+|      .|+|||+.-.   ....+|.+||.|.|
T Consensus        10 e~I~L~qlLK~~g~i~sGG~AK~~i~eg------~V~vNGe~Et---RRgkKlr~gd~V~i   61 (73)
T COG2501          10 EFITLGQLLKLAGLIESGGQAKAFIAEG------EVKVNGEVET---RRGKKLRDGDVVEI   61 (73)
T ss_pred             ceEEHHHHHHHhCcccCcHHHHHHHHCC------eEEECCeeee---ccCCEeecCCEEEE
Confidence            5678999999875444444444555554      4999997643   34579999999987

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=90.63  E-value=1.7  Score=26.42  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccccccccc--CCccccceEEEEcCcccee
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMK--GDSVRPGVLVLVNDCDWEL   76 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~--~g~l~~~v~ilvNg~di~~   76 (99)
                      |+|+|++.|         +.++++++     +..||.+|=+.|.+..  |..+..|+..  .|+      ++-|+..+. 
T Consensus         1 ~~i~vk~~g---------~~~~v~v~-----~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk------~l~D~~~L~-   59 (74)
T cd01813           1 VPVIVKWGG---------QEYSVTTL-----SEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGK------PAEDDVKIS-   59 (74)
T ss_pred             CEEEEEECC---------EEEEEEEC-----CCCCHHHHHHHHHHHHCCCHHHEEEEeecccCC------cCCCCcCHH-
Confidence            677787732         24578887     5688988888887754  4444455431  233      344555544 


Q ss_pred             cCCccCccCCCCEEEEEe
Q 034276           77 SGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        77 l~g~~t~L~dgD~V~i~p   94 (99)
                          +..+++|+.|.++-
T Consensus        60 ----~~~i~~g~~i~lmG   73 (74)
T cd01813          60 ----ALKLKPNTKIMMMG   73 (74)
T ss_pred             ----HcCCCCCCEEEEEe
Confidence                34688999998763

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=3.1  Score=27.35  Aligned_cols=63  Identities=11%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC-ccCCCCEEEEEecCCCC
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT-TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t-~L~dgD~V~i~p~v~GG   99 (99)
                      +.+.+.     -.++++-|.++-|++-.-.           ...+-++.||++|+..+-.+. ..++||+|..+-+--||
T Consensus        33 ~~Fkik-----r~t~LkKLM~aYc~r~Gl~-----------~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   33 VVFKIK-----RHTPLKKLMKAYCERQGLS-----------MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             EEEEee-----cCChHHHHHHHHHHHcCCc-----------cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence            355565     4678999998888754321           224557889999876542222 57999999999888776

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=88.93  E-value=2.1  Score=26.21  Aligned_cols=40  Identities=8%  Similarity=0.032  Sum_probs=30.4

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEE
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVL   68 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~il   68 (99)
                      -+-+|       .|+.+|++.-++++......+|+++|.--..|.+.
T Consensus        21 vi~lP-------~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~I   60 (69)
T PF11834_consen   21 VIWLP-------DSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVI   60 (69)
T ss_pred             EEEcC-------ccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEE
Confidence            46677       59999999999999876667888877655555443

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=88.87  E-value=3  Score=27.65  Aligned_cols=67  Identities=9%  Similarity=0.074  Sum_probs=39.7

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhc-CcccccccccCCccccceEEEEcCccceecCCccCccCCCC-----EEEEEe
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKD-----VVVFIS   94 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~-~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD-----~V~i~p   94 (99)
                      .++++|..   ++.||-|+|.++.++. |.+.-+ ..-...+=..=.+.|||+..-.-   .|.+.+..     .|.|=|
T Consensus        19 ~~y~v~~~---~~~tVLd~L~~Ik~~~D~sLafr-~sCr~giCGsCam~ING~~~LAC---~t~v~~~~~~~~~~i~IeP   91 (110)
T PF13085_consen   19 QEYEVPVE---PGMTVLDALNYIKEEQDPSLAFR-YSCRSGICGSCAMRINGRPRLAC---KTQVDDLIEKFGNVITIEP   91 (110)
T ss_dssp             EEEEEEGG---STSBHHHHHHHHHHHT-TT--B---SSSSSSSSTTEEEETTEEEEGG---GSBGGGCTTSETBEEEEEE
T ss_pred             EEEEecCC---CCCcHHHHHHHHHhccCCCeEEE-ecCCCCCCCCCEEEECCceecce---eeEchhccCCCcceEEEEE
Confidence            44555531   6899999999999986 444322 11111223355699999996543   45666554     466655

...

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=88.85  E-value=2  Score=25.90  Aligned_cols=63  Identities=8%  Similarity=0.018  Sum_probs=40.8

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.++++     ...||.++=+.|.+..  |.....|.. .|.      ++-|++.+     .++.+++|+.|.++...-
T Consensus         9 ~~~l~v~-----~~~TV~~lK~~i~~~~gip~~~q~L~~-~G~------~L~d~~tL-----~~~~i~~g~~l~v~~~~~   71 (76)
T cd01800           9 MLNFTLQ-----LSDPVSVLKVKIHEETGMPAGKQKLQY-EGI------FIKDSNSL-----AYYNLANGTIIHLQLKER   71 (76)
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHHCCCHHHEEEEE-CCE------EcCCCCcH-----HHcCCCCCCEEEEEEecC
Confidence            4678888     5789999988887755  232333332 222      33343332     256899999999998876


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus        72 gg   73 (76)
T cd01800          72 GG   73 (76)
T ss_pred             CC
Confidence            65

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=87.94  E-value=3.1  Score=32.18  Aligned_cols=85  Identities=7%  Similarity=-0.041  Sum_probs=44.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC-cccccccccCCccccceEEEEcCccceecCC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI-KERPEMFMKGDSVRPGVLVLVNDCDWELSGQ   79 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~-~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g   79 (99)
                      |+|+++.+-.=-.....-.+.+|+++     ++.||-|+|.++..+.+ .+..+-.-..| .=..-.+.|||+..-   .
T Consensus         1 ~~i~~~i~R~~~~~~p~~~~~~v~~~-----~~~tvL~~l~~i~~~~d~tL~~~~~c~~~-~Cg~C~v~inG~~~l---a   71 (329)
T PRK12577          1 MEVLFKILRQKQNSAPYVQTYTLEVE-----PGNTILDCLNRIKWEQDGSLAFRKNCRNT-ICGSCAMRINGRSAL---A   71 (329)
T ss_pred             CeEEEEEEeeCCCCCCeEEEEEEECC-----CCChHHHHHHHhCCcCCCCcEEcCCCCCC-CCCCCEEEECCeeec---C
Confidence            77777644210011111122456666     79999999999987763 43221100111 111345889998643   2


Q ss_pred             ccCccCC------------CCEEEEEe
Q 034276           80 LDTTLEE------------KDVVVFIS   94 (99)
Q Consensus        80 ~~t~L~d------------gD~V~i~p   94 (99)
                      =.|++.+            +++|.|=|
T Consensus        72 C~t~v~~~~~~~~~~~~~~~~~i~ieP   98 (329)
T PRK12577         72 CKENVGSELARLSDSNSGAIPEITIAP   98 (329)
T ss_pred             cccchhhhhccccccccCCCCeEEEEE
Confidence            2455554            36777655

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=87.54  E-value=0.53  Score=29.38  Aligned_cols=68  Identities=9%  Similarity=0.071  Sum_probs=30.5

Q ss_pred             hhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcc--cccccccCCccccceEEEEcCccceecCCccCccCCCCE
Q 034276           12 ELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKE--RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDV   89 (99)
Q Consensus        12 ~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~--~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~   89 (99)
                      |..-|.+|   |+++     +.+|+.+|.+.+.+.++-.  .-.++.+... ..-+ .--+++.+     .+..|+.||-
T Consensus        10 rS~dG~~R---ie~~-----~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~-~~~l-~s~~~~tl-----~~lglkHGdm   74 (80)
T PF11543_consen   10 RSKDGMKR---IEVS-----PSSTLSDLKEKISEQLSIPDSSQSLSKDRNN-KEEL-KSSDSKTL-----SSLGLKHGDM   74 (80)
T ss_dssp             E-SSEEEE---EEE------TTSBHHHHHHHHHHHS---TTT---BSSGGG-GGCS-SS-TT-CC-----CCT---TT-E
T ss_pred             ECCCCCEE---EEcC-----CcccHHHHHHHHHHHcCCCCcceEEEecCCC-Cccc-ccCCcCCH-----HHcCCCCccE
Confidence            33456555   6777     5789999999999988543  2345543221 1010 00122222     2468999999


Q ss_pred             EEEEe
Q 034276           90 VVFIS   94 (99)
Q Consensus        90 V~i~p   94 (99)
                      |-+.|
T Consensus        75 lyL~~   79 (80)
T PF11543_consen   75 LYLKP   79 (80)
T ss_dssp             EE---
T ss_pred             EEEec
Confidence            98776

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF

Probab=87.26  E-value=1.3  Score=27.37  Aligned_cols=51  Identities=20%  Similarity=0.134  Sum_probs=32.1

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      -+-++     .++|+.|+...+-.......  .+...           -+   ...-|.+..|+|||.|.|+
T Consensus        25 ~~~l~-----~g~tv~d~a~~IH~d~~~~F--~~A~v-----------~~---~~~vg~d~~l~d~DVv~i~   75 (76)
T cd04938          25 CVLVK-----KGTTVGDVARKIHGDLEKGF--IEAVG-----------GR---RRLEGKDVILGKNDILKFK   75 (76)
T ss_pred             eEEEc-----CCCCHHHHHHHHhHHHHhcc--EEEEE-----------cc---CEEECCCEEecCCCEEEEE
Confidence            35566     68999999887765332211  11111           11   2335789999999999985

The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.71  E-value=1.8  Score=28.35  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             EEEeCCCCCCCcchHHHHHHH--HHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSW--VGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~--L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v   96 (99)
                      .++++     +|+||.|++..  |.+.+|+..   | ..+.+  ||    =++.+    .++.+|+|||.|-|+-|+
T Consensus        20 ~v~v~-----egatV~dAi~~Sgll~~~~~id---l-~~n~~--GI----~~k~~----kl~~~l~dgDRVEIyRPL   77 (99)
T COG2914          20 RVQLQ-----EGATVEDAILASGLLELFPDID---L-HENKV--GI----YSKPV----KLDDELHDGDRVEIYRPL   77 (99)
T ss_pred             EEEec-----cCcCHHHHHHhcchhhccccCC---c-cccce--eE----Ecccc----CccccccCCCEEEEeccc
Confidence            57787     89999999864  222222211   1 11111  21    23333    346789999999999775

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins

Probab=86.40  E-value=0.41  Score=27.84  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=19.1

Q ss_pred             eEEEEcCccceecCCccCccCCCCEEEE
Q 034276           65 VLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        65 v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      --++|||+.+..  +..++|++||.|.|
T Consensus        42 ngt~vng~~l~~--~~~~~L~~gd~i~~   67 (68)
T PF00498_consen   42 NGTFVNGQRLGP--GEPVPLKDGDIIRF   67 (68)
T ss_dssp             S-EEETTEEESS--TSEEEE-TTEEEEE
T ss_pred             CcEEECCEEcCC--CCEEECCCCCEEEc
Confidence            346789977754  66789999999986

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....

>PF13275 S4_2: S4 domain; PDB: 1P9K_A

Probab=86.12  E-value=0.38  Score=29.18  Aligned_cols=52  Identities=21%  Similarity=0.169  Sum_probs=25.1

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEE
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      +..++.++|++.---..+.....|..+|      .|+|||+-..   ....+|.+||.|.|
T Consensus         6 e~I~L~qlLK~~glv~sGGeAK~~I~~g------~V~VNGe~e~---rrg~Kl~~GD~V~~   57 (65)
T PF13275_consen    6 EYITLGQLLKLAGLVSSGGEAKALIQEG------EVKVNGEVET---RRGKKLRPGDVVEI   57 (65)
T ss_dssp             S---HHHHHHHHTS-SSSSTTSHHHHHH------HHEETTB-------SS----SSEEEEE
T ss_pred             CcEEHHHHHhHcCCcccHHHHHHHHHcC------ceEECCEEcc---ccCCcCCCCCEEEE
Confidence            4678889888764322222223333333      3899997643   34579999999987

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=85.43  E-value=3.6  Score=25.01  Aligned_cols=57  Identities=9%  Similarity=0.003  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      .+.++++     +..||++|=+.++++.  |..+-+|.. .|.      ++-++..+     .++-+++|+.|.++
T Consensus        13 ~~~~~v~-----~~~TV~~LK~~I~~~~~~~~~~qrLi~-~Gk------~L~D~~tL-----~~ygi~~~stv~l~   71 (73)
T cd01791          13 KVRVKCN-----PDDTIGDLKKLIAAQTGTRPEKIVLKK-WYT------IFKDHISL-----GDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEeC-----CCCcHHHHHHHHHHHhCCChHHEEEEe-CCc------CCCCCCCH-----HHcCCCCCCEEEEE
Confidence            3467787     5799999999998764  333333322 232      22233222     35678999998875

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>PRK11507 ribosome-associated protein; Provisional

Probab=84.77  E-value=1.4  Score=27.12  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=32.7

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEE
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      +-.++.++|++..---.+.....|..+|      .|.|||+- +.  ....+|.+||.|.|
T Consensus        10 e~I~L~QlLK~~~~v~SGG~AK~~I~eg------~V~VNGev-e~--rRgkKl~~GD~V~~   61 (70)
T PRK11507         10 PHVELCDLLKLEGWSESGAQAKIAIAEG------QVKVDGAV-ET--RKRCKIVAGQTVSF   61 (70)
T ss_pred             CeEEHHHHHhhhCcccChHHHHHHHHcC------ceEECCEE-ec--ccCCCCCCCCEEEE
Confidence            4568889888764322222223333333      38999974 33  34579999999987

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=84.52  E-value=4.5  Score=24.59  Aligned_cols=69  Identities=12%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccccccc-ccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMF-MKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~-~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+-..      |+  ...++++     ...||.+|=+.+++..  |..+.+|. ..+|+      +|-+++   .|
T Consensus         3 ~~i~Vk~~~------G~--~~~~~v~-----~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~------~L~D~~---tL   60 (80)
T cd01792           3 WDLKVKMLG------GN--EFLVSLR-----DSMTVSELKQQIAQKIGVPAFQQRLAHLDSRE------VLQDGV---PL   60 (80)
T ss_pred             eEEEEEeCC------CC--EEEEEcC-----CCCcHHHHHHHHHHHhCCCHHHEEEEeccCCC------CCCCCC---CH
Confidence            566676544      43  3567777     5789999999998875  33233331 11332      122222   22


Q ss_pred             CCccCccCCCCEEEEE
Q 034276           78 GQLDTTLEEKDVVVFI   93 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~   93 (99)
                        .++-+++|+.|.+.
T Consensus        61 --~~~gi~~gs~l~l~   74 (80)
T cd01792          61 --VSQGLGPGSTVLLV   74 (80)
T ss_pred             --HHcCCCCCCEEEEE
Confidence              35678889888765

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PLN02560 enoyl-CoA reductase

Probab=82.57  E-value=6.1  Score=30.54  Aligned_cols=74  Identities=20%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             CeEEEEEcchHhhhcCCeeE-EEEEeCCCCCCCcchHHHHHHHHHHhcCc---cccccc-cc-CCccccceEEEEcCccc
Q 034276            1 MQLTLEFGGGLELLCDSVKV-HNVDVVPPKGSEKLIMKDLLSWVGTNLIK---ERPEMF-MK-GDSVRPGVLVLVNDCDW   74 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~-~~vev~~~~~~~~~tv~dll~~L~~~~~~---~~~~l~-~~-~g~l~~~v~ilvNg~di   74 (99)
                      |+|+|+-..      |+... .+++++     ..+||.||-+.+.++.+.   .+.++- .. +|+-+ ++ ++.+++..
T Consensus         1 M~I~Vk~~~------Gk~i~~~~lev~-----~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~-g~-~L~d~ktL   67 (308)
T PLN02560          1 MKVTVVSRS------GREIIKGGLEVP-----DSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTR-PT-VLDDSKSL   67 (308)
T ss_pred             CEEEEEcCC------CCeecceeEEcC-----CCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcC-cc-ccCCCCCH
Confidence            888888544      32210 257888     578999999999987543   333443 21 22211 21 22233322


Q ss_pred             eecCCccCccCCCCEEEE
Q 034276           75 ELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        75 ~~l~g~~t~L~dgD~V~i   92 (99)
                           .++-+++|+++.+
T Consensus        68 -----~d~gv~~gstLy~   80 (308)
T PLN02560         68 -----KDYGLGDGGTVVF   80 (308)
T ss_pred             -----HhcCCCCCceEEE
Confidence                 2456678877654

>smart00363 S4 S4 RNA-binding domain

Probab=80.35  E-value=1.9  Score=23.30  Aligned_cols=26  Identities=19%  Similarity=0.063  Sum_probs=19.9

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .|+|||+.+..   .+++++.||.|.+..
T Consensus        27 ~i~vng~~~~~---~~~~l~~gd~i~~~~   52 (60)
T smart00363       27 RVKVNGKKVTK---PSYIVKPGDVISVRG   52 (60)
T ss_pred             CEEECCEEecC---CCeEeCCCCEEEEcc
Confidence            38899988732   367999999998743

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA

Probab=80.19  E-value=7.3  Score=21.01  Aligned_cols=46  Identities=22%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      +++|..++++.+....+             ++-+...+||+-++    +.+++.++++|.++.
T Consensus        15 ~~~t~~~~~~~~~~~~~-------------~~~v~~~vng~~~d----L~~~l~~~~~ie~i~   60 (61)
T cd01667          15 KGTTPLDIAKSISPGLA-------------KKAVAAKVNGELVD----LSRPLEEDCELEIIT   60 (61)
T ss_pred             CCCCHHHHHHHHHHHHH-------------hheEEEEECCEEec----CCcCcCCCCEEEEEe
Confidence            68999998887654221             12455678987654    578999999998864

In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1xo3_A	101	Solution Structure Of Ubiquitin Like Protein From M		2e-22
1wgk_A	114	Solution Structure Of Mouse Hypothetical Protein 29		2e-22
2k9x_A	110	Solution Structure Of Urm1 From Trypanosoma Brucei		3e-13
2ax5_A	107	Solution Structure Of Urm1 From Saccharomyces Cerev		3e-11
2qjl_A	99	Crystal Structure Of Urm1 Length = 99		3e-11

>pdb|1XO3|A Chain A, Solution Structure Of Ubiquitin Like Protein From Mus Musculus Length = 101

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 16  DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
           D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWE
Sbjct: 20  DGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 77
Query: 76  LSGQLDTTLEEKDVVVFISTLHGG 99
           L G+LD  L+++D ++FISTLHGG
Sbjct: 78  LLGELDYQLQDQDSILFISTLHGG 101

>pdb|1WGK|A Chain A, Solution Structure Of Mouse Hypothetical Protein 2900073h19rik Length = 114

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 16  DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWE 75
           D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWE
Sbjct: 27  DGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 84
Query: 76  LSGQLDTTLEEKDVVVFISTLHGG 99
           L G+LD  L+++D ++FISTLHGG
Sbjct: 85  LLGELDYQLQDQDSILFISTLHGG 108

>pdb|2K9X|A Chain A, Solution Structure Of Urm1 From Trypanosoma Brucei Length = 110

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 23  VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFM--KGDSVRPGVLVLVNDCDWELSGQL 80
           +D V P G+    +  L+  + TN +KERP++ +   G ++RPG+LVLVN CD E+ G +
Sbjct: 27  LDGVVPTGTN---LNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGM 83
Query: 81  DTTLEEKDVVVFISTLHGG 99
           D  L + D V FISTLHGG
Sbjct: 84  DYVLNDGDTVEFISTLHGG 102

>pdb|2AX5|A Chain A, Solution Structure Of Urm1 From Saccharomyces Cerevisiae Length = 107

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 54 MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          +F++ DS+RPG++ L+ND DWEL G+ D  LE+ D++ F STLHGG
Sbjct: 54 IFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99

>pdb|2QJL|A Chain A, Crystal Structure Of Urm1 Length = 99

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 54 MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          +F++ DS+RPG++ L+ND DWEL G+ D  LE+ D++ F STLHGG
Sbjct: 54 IFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	2e-38
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	1e-35
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	3e-35
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	2e-09
1v8c_A	168	MOAD related protein; riken structural genomics/pr	3e-06
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	3e-05
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	2e-04
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	5e-04

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A Length = 114

 Score =  123 bits (310), Expect = 2e-38
 Identities = 55/99 (55%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           + + +EFGGG ELL D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDS
Sbjct: 12  LCVKVEFGGGAELLFDGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 69

Query: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VRPG+LVL+ND DWEL G+LD  L+++D ++FISTLHGG
Sbjct: 70  VRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 108

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A Length = 99

 Score =  115 bits (290), Expect = 1e-35
 Identities = 35/101 (34%), Positives = 62/101 (61%), Gaps = 5/101 (4%)

Query: 1  MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPE--MFMKG 58
          + + +EF GGL+ +    +VH + +      + + + DL+  + + +I    +  +F++ 
Sbjct: 2  VNVKVEFLGGLDAIFGKQRVHKIKMD---KEDPVTVGDLIDHIVSTMINNPNDVSIFIED 58

Query: 59 DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          DS+RPG++ L+ND DWEL G+ D  LE+ D++ F STLHGG
Sbjct: 59 DSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei} Length = 110

 Score =  115 bits (289), Expect = 3e-35
 Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFM--KG 58
             +T++F GG ELL        +D V P G+    +  L+  + TN +KERP++ +   G
Sbjct: 5   NHITVQFAGGCELLFAKQTSLQLDGVVPTGT---NLNGLVQLLKTNYVKERPDLLVDQTG 61

Query: 59  DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
            ++RPG+LVLVN CD E+ G +D  L + D V FISTLHGG
Sbjct: 62  QTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTLHGG 102

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Length = 90

 Score = 49.0 bits (117), Expect = 2e-09
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 37 KDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96
           +LL  +      E  +    G+++   V++LVN  +      LDT +++ D +     +
Sbjct: 28 SELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPV 87

Query: 97 HGG 99
           GG
Sbjct: 88 AGG 90

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 Length = 168

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 37 KDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96
           ++L  +       + E+F +G+ +   V V +   D      L T L     +     +
Sbjct: 26 GEVLENLVRAYPALKEELF-EGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84

Query: 97 HGG 99
           GG
Sbjct: 85 AGG 87

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A Length = 93

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 60 SVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           +   V + VND D   SG L T + + D V  +  + GG
Sbjct: 54 KLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAVAGG 93

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} Length = 99

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 46 NLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           +I E+ +   +   +   + +L+N  +      L+T L++ D +  +  + GG
Sbjct: 46 YVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPVSGG 99

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A Length = 89

 Score = 35.0 bits (81), Expect = 5e-04
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 4/63 (6%)

Query: 37 KDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96
           D L  +          +F     +   + VL N    E +  L       D +     +
Sbjct: 31 GDALDALVGAHPALESRVFGDDGELYDHINVLRNG---EAAA-LGEATAAGDELALFPPV 86

Query: 97 HGG 99
           GG
Sbjct: 87 SGG 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	100.0
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	100.0
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	99.97
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	99.96
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	99.94
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	99.94
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	99.93
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	99.93
1v8c_A	168	MOAD related protein; riken structural genomics/pr	99.84
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	99.83
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	99.81
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	99.8
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	99.39
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	99.35
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	99.3
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	99.24
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	99.12
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	99.09
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	98.74
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	98.65
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	98.49
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	97.73
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	97.19
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	97.07
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	96.9
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	96.84
3hvz_A	78	Uncharacterized protein; alpha-beta protein, struc	96.59
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	96.55
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	96.52
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	96.46
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	96.41
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	96.34
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	96.2
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	96.18
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	95.84
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	95.73
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	95.7
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	95.46
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	95.43
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	95.36
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	95.27
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	95.2
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	95.2
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	94.91
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	94.79
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	94.67
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	94.62
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	94.54
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	94.32
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	94.21
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	94.18
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	93.97
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	93.95
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	93.74
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	93.69
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	93.65
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	93.65
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	93.22
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	93.12
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	93.11
2eki_A	93	DRG 1, developmentally-regulated GTP-binding prote	93.02
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	92.95
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	92.8
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	92.59
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	92.56
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	92.53
1we6_A	111	Splicing factor, putative; structural genomics, ub	92.49
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	92.13
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	91.97
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	91.9
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	91.69
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	90.9
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	91.47
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	91.46
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	91.44
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	91.4
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	91.29
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	91.23
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	91.23
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	90.83
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	90.8
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	90.56
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	90.46
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	90.29
3va4_A	132	Mediator of DNA damage checkpoint protein 1; cell	90.26
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	90.2
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	89.82
3fm8_A	124	Kinesin-like protein KIF13B; kinesin, GAP, GTPase	89.28
2pjh_A	80	Protein NPL4, nuclear protein localization protein	89.26
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	88.52
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	88.51
4ejq_A	154	Kinesin-like protein KIF1A; homodimer, FHA domain,	87.99
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	87.9
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	87.57
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	87.29
1wln_A	120	Afadin; beta sandwich, FHA domain, structural geno	87.04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	86.82
1wwt_A	88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	86.65
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	86.43
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	85.62
3u7z_A	101	Putative metal binding protein rumgna_00854; the b	85.01
4egx_A	184	Kinesin-like protein KIF1A; FHA domain, transport	84.81
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	84.28
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	83.63
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	83.45
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	83.27
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	83.07
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	83.05
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	82.76
4h87_A	130	Kanadaptin; FHA domain of PF00498, mRNA processing	81.4
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	81.13
3po8_A	100	RV0020C protein, putative uncharacterized protein	81.02

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=100.00  E-value=5.2e-35  Score=194.66  Aligned_cols=97  Identities=56%  Similarity=1.020  Sum_probs=89.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+|+|+||+++|+++++++++|.  ..+++||++||++|+++||..++++|+++|++||+|+|+|||+||++++|+
T Consensus        12 M~v~V~~~~~Lr~~~g~~~~~~vel~~--~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl   89 (114)
T 1wgk_A           12 LCVKVEFGGGAELLFDGVKKHQVALPG--QEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL   89 (114)
T ss_dssp             EEEEEEECTTTGGGTTTCSEEEEEECC--CSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred             cEEEEEEchHHHHHhCCceEEEEEeCC--CCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence            789999999999999987667899882  012369999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|+|||+|+||||+|||
T Consensus        90 dt~L~dGDeV~iip~vaGG  108 (114)
T 1wgk_A           90 DYQLQDQDSILFISTLHGG  108 (114)
T ss_dssp             TCBCCSSEEEEEEECSCCC
T ss_pred             CcCCCCCCEEEEeCCCCCC
Confidence            9999999999999999998

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}

Probab=100.00  E-value=3.3e-34  Score=189.83  Aligned_cols=96  Identities=40%  Similarity=0.692  Sum_probs=86.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCC--ccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD--SVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g--~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+|+|+||+++|+  ++++++|..+ ++++||++||++|+++||..++++|.++|  ++||+|+|||||+||++++
T Consensus         5 m~v~V~f~g~l~~l~g~--~~~v~l~~~~-g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~   81 (110)
T 2k9x_A            5 NHITVQFAGGCELLFAK--QTSLQLDGVV-PTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG   81 (110)
T ss_dssp             SCCEEEEESSCGGGTTS--CSEECCCCSC-GGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred             cEEEEEEEecHHHHhCC--eEEEEeCCcC-CCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence            78999999999999995  3478888210 13459999999999999999999998888  8999999999999999999


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      |++|+|+|||+|+||||+|||
T Consensus        82 gldt~L~dgD~V~fistlhg~  102 (110)
T 2k9x_A           82 GMDYVLNDGDTVEFISTLHGG  102 (110)
T ss_dssp             SSCCCCCSSCEEEEEECCCCC
T ss_pred             CcccCCCCcCEEEEeCCCccc
Confidence            999999999999999999998

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=99.97  E-value=3.5e-31  Score=171.27  Aligned_cols=96  Identities=36%  Similarity=0.776  Sum_probs=85.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccc--cccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l--~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+|||+||+++|.++++++++|.   .+++||++|+++|.++||..++++  |.+++++|++++|+||+++|++++
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~---~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~   78 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDK---EDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG   78 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECS---CSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCC---CCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC
Confidence            689999999999999433456788861   036899999999999999877778  888899999999999999999999


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      +++|+|++||+|+||||+|||
T Consensus        79 ~~d~~L~dgDeVa~~Ppv~GG   99 (99)
T 2qjl_A           79 EKDYILEDGDIISFTSTLHGG   99 (99)
T ss_dssp             GGGCBCCTTCEEEEEECTTCC
T ss_pred             CCCcCcCCCCEEEEECCCCCC
Confidence            999999999999999999998

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=99.96  E-value=8.5e-30  Score=162.39  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=83.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCccccccccc--CCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMK--GDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~--~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|||+|||.||+.+|++.  +++.      +++||++|++.|.++||.+++.+|++  +|++|++++|+||+++|++++
T Consensus         1 M~v~V~~fa~lr~~~g~~~--~~~~------~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~   72 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQK--SVSA------SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG   72 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCS--EEEE------CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT
T ss_pred             CEEEEEEeHHHHHHhCCCe--EEec------CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC
Confidence            9999999999999999754  4664      47899999999999999999899876  789999999999999999999


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      +.+|+|++||+|+||||+|||
T Consensus        73 ~~~~~L~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           73 GLATAIADGDSVTILPAVAGG   93 (93)
T ss_dssp             GGGCBCCTTCEEEEEECCTTC
T ss_pred             CCCcCCCCCCEEEEECCCCCC
Confidence            999999999999999999998

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=99.94  E-value=4.8e-27  Score=148.40  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=81.5

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      +|+|+|||.||+++|.. +.++++|     +++||++|++.|..+||++...+|+++|++|++++|+|||+.++.    +
T Consensus         2 ~i~V~~fa~lre~~g~~-~~~~~~~-----~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----~   71 (89)
T 3po0_A            2 SMEWKLFADLAEVAGSR-TVRVDVD-----GDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL----G   71 (89)
T ss_dssp             EEEEEECHHHHHHHTCS-EEEEECC-----TTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT----T
T ss_pred             EEEEEEcHHHHHHhCCC-eEEEECC-----CCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC----C
Confidence            69999999999999964 4678888     689999999999999999888899989999999999999999974    8


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||+|+||||++||
T Consensus        72 ~~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           72 EATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SBCCTTCEEEEECCCSCC
T ss_pred             cccCCCCEEEEECCCCCC
Confidence            999999999999999998

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=99.94  E-value=1.4e-26  Score=149.28  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=79.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+|||.||+++|+. +.+++++     +++||++|++.|..+||.+++.+|+++|++++.+.|+|||+.|.    .
T Consensus        10 ~~v~V~~FA~lre~~g~~-~~~~e~~-----~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~----~   79 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVD-EEEIELP-----EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----W   79 (98)
T ss_dssp             EEEEEEECTHHHHHHSSS-EEEEEEC-----TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----T
T ss_pred             EEEEEEEhHHHHHHhCCC-eEEEECC-----CCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC----C
Confidence            899999999999999974 3578888     68999999999999999999999999999999999999999996    4


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|++||+|+||||++||
T Consensus        80 ~~~L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           80 DEELKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             TCBCCTTCEEEEESCC---
T ss_pred             CCCCCCCCEEEEECCCCCC
Confidence            8999999999999999998

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=99.93  E-value=3.9e-26  Score=143.82  Aligned_cols=88  Identities=18%  Similarity=0.268  Sum_probs=81.4

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCccccc-ccccCCccccceEEEEcCccceecCCcc
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~-l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      |+|+|||.||+.+|++.   ++++     .+.|+++|++.|..+||.++.. +|+++| +++++.|+|||+.|..+++.+
T Consensus         2 v~V~~fa~lr~~~g~~~---~~~~-----~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~~~   72 (90)
T 2g1e_A            2 VTVRYYATLRPITKKKE---ETFN-----GISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMKGLD   72 (90)
T ss_dssp             EEEEECSTHHHHHTCSE---EEES-----SCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTCSSS
T ss_pred             EEEEEeHHHHHHcCCCE---EEcC-----CCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccCCCC
Confidence            89999999999999643   5677     5789999999999999988887 888888 999999999999999999999


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||+|+||||++||
T Consensus        73 ~~l~~gD~V~i~ppv~GG   90 (90)
T 2g1e_A           73 TEIKDDDKIDLFPPVAGG   90 (90)
T ss_dssp             CBCCTTCEEEEECCTTCC
T ss_pred             cCCCCCCEEEEeCCCCCC
Confidence            999999999999999998

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=99.93  E-value=5.4e-26  Score=147.05  Aligned_cols=89  Identities=13%  Similarity=0.196  Sum_probs=81.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccce-------EEEEcCcc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGV-------LVLVNDCD   73 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v-------~ilvNg~d   73 (99)
                      |+|+|+|||.||+++|.+ +  ++++      +.|++||++.|..+||.++..++ ++|++++++       +|+|||+.
T Consensus         4 m~v~V~~fa~lr~~~g~~-~--~~l~------~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~   73 (99)
T 2l52_A            4 AEVKVKLFANLREAAGTP-E--LPLS------GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNN   73 (99)
T ss_dssp             CEEEEEECTHHHHHHSSS-E--EEEE------CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSC
T ss_pred             eEEEEEEeHHHHHHhCCC-e--EEEe------CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEE
Confidence            799999999999999964 3  4454      47999999999999999888888 778899999       99999999


Q ss_pred             ceecCCccCccCCCCEEEEEecCCCC
Q 034276           74 WELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        74 i~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      |+++++.+|+|++||+|+||||++||
T Consensus        74 v~~~~~~~~~L~~gD~V~i~ppv~GG   99 (99)
T 2l52_A           74 IRHLEGLETLLKDSDEIGILPPVSGG   99 (99)
T ss_dssp             GGGTTSTTSCCCTTEEEEEECCCSCC
T ss_pred             ccccCCCCCCCCCCCEEEEECCCCCC
Confidence            99999999999999999999999998

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=99.84  E-value=2.7e-21  Score=135.66  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      .||+|||.||+++|++   +++++     + .||.+|++.|..+||.+...+|++ +.+++++.|+|||+.+..+++.+|
T Consensus         1 ~~V~~FA~Lre~~G~~---~~ev~-----~-~TV~dLl~~L~~~~p~l~~~l~~~-~~l~~~v~VaVNg~~v~~~~~~dt   70 (168)
T 1v8c_A            1 PKVNLYATFRDLTGKS---QLELP-----G-ATVGEVLENLVRAYPALKEELFEG-EGLAERVSVFLEGRDVRYLQGLST   70 (168)
T ss_dssp             CEEEECTHHHHHHTCS---EEECC-----C-SBHHHHHHHHHHHCGGGHHHHEET-TEECTTCEEEETTEEGGGTTGGGC
T ss_pred             CEEEEeHHHHHHhCCC---eEEEC-----C-CcHHHHHHHHHhhChhhhhhhhcc-cccCCcEEEEECCEECCCcCCCcc
Confidence            3899999999999964   36677     4 899999999999999988888854 459999999999999999999999


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+||||++||
T Consensus        71 ~L~dGDeVai~PpVsGG   87 (168)
T 1v8c_A           71 PLSPGATLDLFPPVAGG   87 (168)
T ss_dssp             BCCTTCEEEEECSCCSE
T ss_pred             CCCCCCEEEEECccccc
Confidence            99999999999999998

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=99.83  E-value=6.4e-21  Score=117.87  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD   81 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~   81 (99)
                      +|+|+|||.||+.+|+. +.+++ +     ++.|+++|++.|..+||.+.+.+ . .+    .+.|+||++.+.    .+
T Consensus         1 ~v~V~~fa~lr~~~g~~-~~~~~-~-----~~~tv~~ll~~L~~~~p~~~~~l-~-~~----~~~v~vN~~~v~----~~   63 (81)
T 1fm0_D            1 MIKVLFFAQVRELVGTD-ATEVA-A-----DFPTVEALRQHMAAQSDRWALAL-E-DG----KLLAAVNQTLVS----FD   63 (81)
T ss_dssp             CEEEEECHHHHHHHTCS-EEEEC-S-----CCSBHHHHHHHHHTTCHHHHHHH-C-CT----TCEEEETTEECC----TT
T ss_pred             CEEEEEeHHHHHHhCCC-eEEEc-C-----CCCCHHHHHHHHHHHChhHHHHh-c-CC----CEEEEECCEECC----CC
Confidence            58999999999999964 34555 5     68899999999999998776544 2 22    468999999884    58


Q ss_pred             CccCCCCEEEEEecCCCC
Q 034276           82 TTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        82 t~L~dgD~V~i~p~v~GG   99 (99)
                      |+|++||+|+||||++||
T Consensus        64 ~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           64 HPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             CBCCTTCEEEEECCCCCC
T ss_pred             CCCCCCCEEEEeCCCCCC
Confidence            999999999999999998

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=99.81  E-value=5.2e-20  Score=112.96  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+|||.||+    +.   ++++      ++|+++|++.|..+ |++.+.        .+.+.|+||++.|.   +.
T Consensus         1 M~v~V~~fa~l~~----~~---~e~~------~~tv~~ll~~L~~~-~~l~~~--------l~~~~vavN~~~v~---~~   55 (74)
T 3rpf_C            1 MMVEVRFFGPIKE----EN---FFIK------ANDLKELRAILQEK-EGLKEW--------LGVCAIALNDHLID---NL   55 (74)
T ss_dssp             CEEEEEECTTCCC----CC---EEEE------CSSHHHHHHHHHTC-TTTTTT--------TTTCEEEESSSEEC---CT
T ss_pred             CEEEEEEEeecce----eE---EeeC------CCcHHHHHHHHHHC-cCHHHH--------hhccEEEECCEEcC---CC
Confidence            9999999999998    22   4554      68999999999875 544322        25799999999874   57


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|++||+|+||||++||
T Consensus        56 ~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           56 NTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             TCCCCTTCEEEEECCBCCC
T ss_pred             CcCCCCCCEEEEECCCCCC
Confidence            8999999999999999998

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=99.80  E-value=9.1e-20  Score=111.80  Aligned_cols=77  Identities=12%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |+|+|||.||+.+|.. +.+++++     +++|+.+|++.|..+||...        .+  .+.|+|||+.+..    +|
T Consensus         1 i~V~~fa~lr~~~g~~-~~~~~~~-----~~~tv~~ll~~l~~~~p~~~--------~v--~~~v~vNg~~v~~----~~   60 (77)
T 2q5w_D            1 MKVLYFAEIKDILQKA-QEDIVLE-----QALTVQQFEDLLFERYPQIN--------NK--KFQVAVNEEFVQK----SD   60 (77)
T ss_dssp             CEEECCHHHHHHHTCS-EEECCCS-----SCEEHHHHHHHHHHHCGGGT--------TC--CCEEEETTEEECT----TS
T ss_pred             CEEEEeHHHHHHhCCC-EEEEECC-----CCCCHHHHHHHHHHHCcchh--------cc--eEEEEECCEECCC----CC
Confidence            6899999999999975 3567777     78999999999999998531        12  3589999998864    69


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+||||++||
T Consensus        61 ~L~~gD~V~i~ppv~GG   77 (77)
T 2q5w_D           61 FIQPNDTVALIPPVSGG   77 (77)
T ss_dssp             EECTTCEEEEECSCCCC
T ss_pred             CcCCCCEEEEECCCCCC
Confidence            99999999999999998

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=99.39  E-value=1.7e-13  Score=82.09  Aligned_cols=57  Identities=12%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     +++|+.+|++.|.-  +             .+.+.|.+|++.+...++.+|+|++||+|+||||++||
T Consensus        10 ~~~~-----~~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A           10 MQCA-----AGQTVHELLEQLDQ--R-------------QAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             ECCC-----TTCCHHHHHHHHTC--C-------------CSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred             EEcC-----CCCcHHHHHHHcCC--C-------------CCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence            5677     68999999999831  1             35788999999998888889999999999999999998

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=99.35  E-value=1.1e-12  Score=78.16  Aligned_cols=52  Identities=29%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      +.|+.+|++.|.-  +             .+.+.|.+|++-+...++.+|+|++||+|.||||++||
T Consensus        13 ~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG   64 (64)
T 2cu3_A           13 GKTLKEVLEEMGV--E-------------LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG   64 (64)
T ss_dssp             TCCHHHHHHHHTB--C-------------GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred             CCcHHHHHHHcCC--C-------------CCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence            6899999999841  1             35788999999999999999999999999999999998

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=99.30  E-value=2e-13  Score=84.16  Aligned_cols=67  Identities=19%  Similarity=0.287  Sum_probs=54.3

Q ss_pred             cchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCC
Q 034276            8 GGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEK   87 (99)
Q Consensus         8 ~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dg   87 (99)
                      ||.+++.++... .+++++     +++||.+|++.|.  ++             .+.+.|.|||+-+..    +|+|++|
T Consensus        11 fa~~~e~~~~n~-~~~~~~-----~~~Tv~dLl~~L~--~~-------------~~~v~VavNg~~v~~----~~~L~dG   65 (77)
T 1rws_A           11 MIKVKVIGRNIE-KEIEWR-----EGMKVRDILRAVG--FN-------------TESAIAKVNGKVVLE----DDEVKDG   65 (77)
T ss_dssp             CCCCBSTTCCCC-CCCCCC-----SSCCHHHHHHTTT--CS-------------SCSSCEEETTEEECS----SSCCCSS
T ss_pred             HHHHHHhcccCC-EEEECC-----CCCcHHHHHHHhC--CC-------------CcCEEEEECCEECCC----CCCcCCC
Confidence            678888888653 457777     6899999999874  11             235679999998864    5999999


Q ss_pred             CEEEEEecCCCC
Q 034276           88 DVVVFISTLHGG   99 (99)
Q Consensus        88 D~V~i~p~v~GG   99 (99)
                      |+|.||||++||
T Consensus        66 D~V~i~ppv~GG   77 (77)
T 1rws_A           66 DFVEVIPVVSGG   77 (77)
T ss_dssp             CCCBCSCCCCCC
T ss_pred             CEEEEEcccccC
Confidence            999999999998

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=99.24  E-value=8.2e-12  Score=79.14  Aligned_cols=57  Identities=21%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             EEeCCCCCCCc-chHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEK-LIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~-~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++ .|+.+||+.|.          +.     ...+.|.||++-+...+..+|+|++||+|.|||||+||
T Consensus        30 ~el~-----~~~~Tv~dLL~~L~----------~~-----~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           30 VKWK-----KDTGTIQDLLASYQ----------LE-----NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ECCS-----SSCCBHHHHHHHTT----------CT-----TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred             EECC-----CCCCcHHHHHHHhC----------CC-----CCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence            5666     66 89999999883          11     24788999999998888889999999999999999998

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=99.12  E-value=1.4e-10  Score=70.17  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=44.8

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .+++++     ++.|+.+|++.|.-          .     ...+.|.+|++-+..    +++|++||+|+||||++||
T Consensus        16 ~~~~~~-----~~~tv~~Ll~~l~~----------~-----~~~v~vavN~~~v~~----~~~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A           16 KILESG-----APRRIKDVLGELEI----------P-----IETVVVKKNGQIVID----EEEIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             EEEEES-----SCCBHHHHHHHTTC----------C-----TTTEEEEETTEECCT----TSBCCTTCEEEEEECTTCC
T ss_pred             eeEECC-----CCCcHHHHHHHhCC----------C-----CCCEEEEECCEECCC----cccCCCCCEEEEEeccccC
Confidence            357788     67999999998831          1     236789999988754    4699999999999999998

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=99.09  E-value=1.2e-10  Score=71.48  Aligned_cols=66  Identities=29%  Similarity=0.335  Sum_probs=51.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+++|.      ..  .++++|     +++|++|||+.|.          +..+     .+.|++||+-+..    
T Consensus         1 M~v~Vkl~g~------~~--~~~ev~-----~g~Tv~dLL~~Lg----------l~~~-----~VvV~vNG~~v~~----   48 (74)
T 2l32_A            1 MNVTVEVVGE------ET--SEVAVD-----DDGTYADLVRAVD----------LSPH-----EVTVLVDGRPVPE----   48 (74)
T ss_dssp             CEEEEECSSS------SE--EEEECS-----TTCSHHHHHHTTC----------CCSS-----CCCEECCCCCCCT----
T ss_pred             CEEEEEEeCc------cc--eeEEcC-----CCCcHHHHHHHcC----------CCcc-----eEEEEECCEECCH----
Confidence            9999999965      22  357899     7999999999763          1111     4569999998754    


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +..+ +||.|.|++.++||
T Consensus        49 d~~l-~GD~VeIv~~V~G~   66 (74)
T 2l32_A           49 DQSV-EVDRVKVLRLIKGG   66 (74)
T ss_dssp             TSSS-CCCCEEECSSCSCC
T ss_pred             HHCC-CCCEEEEEEeeccc
Confidence            3455 59999999999998

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=98.65  E-value=1.5e-08  Score=62.67  Aligned_cols=53  Identities=28%  Similarity=0.276  Sum_probs=44.1

Q ss_pred             cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      +.|+.+||+.|.  ++.            ...+.|.+||+=+.-.+..+|+|++||.|.|||+++||
T Consensus        17 ~~Tl~~LL~~l~--~~~------------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG   69 (78)
T 2k5p_A           17 SLNVTELLSALK--VAQ------------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG   69 (78)
T ss_dssp             CEEHHHHHHHHT--CSC------------TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred             CCcHHHHHHHcC--CCC------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence            689999999884  110            23677999999887777778999999999999999998

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=98.49  E-value=5e-07  Score=58.04  Aligned_cols=73  Identities=11%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH--hcCcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT--NLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~--~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|-|.-.=|     +....++++     +++||.|+|+.+.-  .+|+    + +    + ..+.|.|||+-+.   
T Consensus        13 ~~v~v~ya~p~r-----q~~~~~~v~-----~g~TV~daI~~~gi~~~~pe----I-d----l-~~~~V~Vng~~v~---   69 (97)
T 2hj1_A           13 INIEIAYAFPER-----YYLKSFQVD-----EGITVQTAITQSGILSQFPE----I-D----L-STNKIGIFSRPIK---   69 (97)
T ss_dssp             EEEEEEEEETTE-----EEEEEEEEE-----TTCBHHHHHHHHTHHHHCTT----C-C----T-TTSEEEEEECSCC---
T ss_pred             EEEEEEEeCCCC-----CEEEEEEcC-----CCCcHHHHHHHcCCCccCCc----c-c----c-cccEEEEcCEECC---
Confidence            356665554433     233467788     79999999999853  3333    2 1    1 1567999999986   


Q ss_pred             CccCccCCCCEEEEEecCC
Q 034276           79 QLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~   97 (99)
                       .+|+|++||.|.|+||+-
T Consensus        70 -~d~~L~dGDRVEIyrpl~   87 (97)
T 2hj1_A           70 -LTDVLKEGDRIEIYRPLL   87 (97)
T ss_dssp             -TTCBCCTTCEEEECCCCC
T ss_pred             -CCccCCCCCEEEEEeccc
Confidence             689999999999999973

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=97.73  E-value=8.7e-05  Score=43.79  Aligned_cols=66  Identities=15%  Similarity=-0.004  Sum_probs=47.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|.+.-      |  +  ..++|     +++|+.|+++.+...++             +..+.+.|||+-|..    
T Consensus         1 m~i~i~~p~------g--~--~~~~~-----~g~T~~dla~~i~~~l~-------------~~~vaa~vNg~lvdl----   48 (73)
T 2kmm_A            1 MEVMVFTPK------G--E--IKRLP-----QGATALDFAYSLHSDLG-------------DHCIGAKVNHKLVPL----   48 (73)
T ss_dssp             CCEEEECTT------C--C--EEEEC-----TTCBHHHHHHHHCSHHH-------------HTEEEEEETTEECCT----
T ss_pred             CeEEEEcCC------C--C--EEEcC-----CCCcHHHHHHHHhhccc-------------cceEEEEECCEEeCC----
Confidence            778887641      3  2  25677     78999999987743111             225667899987754    


Q ss_pred             cCccCCCCEEEEEecCCC
Q 034276           81 DTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~G   98 (99)
                      +++|++||.|.|++....
T Consensus        49 ~~~L~~~~~Veivt~~~~   66 (73)
T 2kmm_A           49 SYVLNSGDQVEVLSSKSL   66 (73)
T ss_dssp             TCBCCSSSBEEEEECCCC
T ss_pred             CcCcCCCCEEEEEECCCC
Confidence            799999999999988653

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=97.19  E-value=0.0018  Score=37.58  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  .+.++++     ...||.+|-+.+++...  ...-+|+. .|+      .+-+++   .| 
T Consensus         1 M~i~vk~~~g------~--~~~i~v~-----~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~------~L~d~~---tL-   56 (76)
T 3a9j_A            1 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   56 (76)
T ss_dssp             CEEEEEETTS------C--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTC---BT-
T ss_pred             CEEEEEcCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCe------ECCCCC---cH-
Confidence            8999998642      2  3467887     57899999999988662  22223332 222      111221   12 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        57 -~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A           57 -SDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             -GGGTCCTTCEEEEEECCCCC
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             35678899999999999998

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=97.07  E-value=0.002  Score=37.39  Aligned_cols=74  Identities=11%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  ...-+|+.. |+      .+-+++   .| 
T Consensus         1 M~i~vk~~~------g~--~~~~~v~-----~~~tv~~lK~~i~~~~~i~~~~q~L~~~-g~------~L~d~~---tL-   56 (76)
T 1ndd_A            1 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIYS-GK------QMNDEK---TA-   56 (76)
T ss_dssp             CEEEEECTT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTS---BG-
T ss_pred             CEEEEECCC------CC--EEEEEEC-----CCChHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCCC---cH-
Confidence            889998764      22  3467787     57899999999988652  222233321 22      111221   12 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        57 -~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A           57 -ADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             -GGGTCCTTCEEEEEECCC--
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             25678999999999999998

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=96.90  E-value=0.0039  Score=37.05  Aligned_cols=74  Identities=9%  Similarity=0.143  Sum_probs=46.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.++++..  ..+.+|+. .|+      .+-++.   .| 
T Consensus         4 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~------~L~d~~---tL-   59 (85)
T 3n3k_B            4 MRIVVKTLM------GR--TIILEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   59 (85)
T ss_dssp             CEEEEECGG------GC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TBE------ECCTTC---BT-
T ss_pred             EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHHCCCHHHEEEEE-CCe------ECCCCC---CH-
Confidence            788887653      22  3567887     57899999999988762  22223332 222      121221   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++||.|.++...-||
T Consensus        60 -~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B           60 -SDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             -TTTTCCTTCEEEEEECCC--
T ss_pred             -HHCCCCCCCEEEEEEeccCC
Confidence             25678999999999988876

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=96.84  E-value=0.0036  Score=37.12  Aligned_cols=74  Identities=12%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  .+.++++     ...||.+|-+.+++...  ..+.+|+. .|+      ++-++.   .| 
T Consensus         4 m~i~vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~------~L~d~~---tL-   59 (85)
T 3mtn_B            4 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   59 (85)
T ss_dssp             EEEEEECTTS------C--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTS---BT-
T ss_pred             EEEEEEcCCC------C--EEEEEEC-----CCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCCC---CH-
Confidence            6788877532      2  3567888     57899999999988763  22223332 222      111221   12 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++...-||
T Consensus        60 -~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B           60 -SDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -GGGTCCTTCEEEEECCCCCC
T ss_pred             -HHcCCCCCCEEEEEEECcCC
Confidence             24578999999999988876

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}

Probab=96.59  E-value=0.0023  Score=39.16  Aligned_cols=51  Identities=8%  Similarity=0.043  Sum_probs=37.7

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEec
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~   95 (99)
                      +++|     .|+|+.|+...+..   ++.+.          .+-..|||+-+.    ++|+|++||.|.|+.+
T Consensus        18 ~~lp-----~GaT~~D~A~~Ih~---~lg~~----------~v~AkVNG~~v~----L~~~L~~gd~VeIit~   68 (78)
T 3hvz_A           18 ISLP-----IGSTVIDFAYAIHS---AVGNR----------MIGAKVDGRIVP----IDYKVKTGEIIDVLTT   68 (78)
T ss_dssp             EEEE-----TTCBHHHHHHHHCH---HHHHT----------EEEEEETTEEEC----TTCBCCTTCBEEEEEC
T ss_pred             EEec-----CCCCHHHHHHHhhh---hhhcc----------eEEEEECCEEcC----CCcccCCCCEEEEEcc
Confidence            5677     79999998877733   22222          234677998875    4799999999999875

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=96.55  E-value=0.0092  Score=36.44  Aligned_cols=74  Identities=11%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  .+.++++     ...||.+|-+.+++...  ...-+|+. .|+      +|-++..   | 
T Consensus         2 m~i~vk~~~g------~--~~~~~v~-----~~~TV~~LK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L-   57 (96)
T 3k9o_B            2 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   57 (96)
T ss_dssp             CEEEEEETTC------C--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T-
T ss_pred             cEEEEEeCCC------C--EEEEEEC-----CCCCHHHHHHHHHhhhCCChhHEEEEE-CCE------ECCCCCc---H-
Confidence            8899987642      2  3567887     57899999999988763  22223332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++|+.|.++..+-||
T Consensus        58 -~~~~i~~~~~i~l~~r~~gG   77 (96)
T 3k9o_B           58 -SDYNIQKESTLHLVLRLRGY   77 (96)
T ss_dssp             -GGGTCCTTCEEEEEECCCC-
T ss_pred             -HHcCCCCCCEEEEEEEcCCC
Confidence             24678999999999888776

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=96.52  E-value=0.0072  Score=36.16  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=47.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  ....+|+. .|+      .|-+++.   | 
T Consensus        13 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L-   68 (88)
T 3dbh_I           13 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKT---A-   68 (88)
T ss_dssp             EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTSB---G-
T ss_pred             EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcCHHHEEEEE-CCe------ECCCCCc---H-
Confidence            677777543      32  3567887     57899999999988763  22223332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-.+-||
T Consensus        69 -~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           69 -ADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             -GGGTCCTTCEEEECCCCCCC
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             25678999999999999988

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=96.46  E-value=0.014  Score=35.98  Aligned_cols=74  Identities=12%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  ...++++     ...||.+|-+.+++...  ...-+|+. .|+      .|-+++.   | 
T Consensus         1 M~I~Vk~~~g------~--~~~~~v~-----~~~TV~~LK~~I~~~~gi~~~~qrL~~-~Gk------~L~D~~t---L-   56 (98)
T 1yx5_B            1 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   56 (98)
T ss_dssp             CEEEEEETTS------C--EEEEECC-----TTCBHHHHHHHHHHHTCCCGGGEEEEE-TTE------ECCTTSB---T-
T ss_pred             CEEEEEeCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCCCC---H-
Confidence            8999998643      2  3467787     57899999999988663  22223332 222      1112211   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        57 -~~~gi~~g~~i~l~~~~~gG   76 (98)
T 1yx5_B           57 -SDYNIQKESTLHLVLRLRGG   76 (98)
T ss_dssp             -GGGTCCTTCEEEEEECCCCC
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             24578899999999888776

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.012  Score=36.52  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.++++..  ....+|+. .|+      +|-+++.   | 
T Consensus        23 m~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L-   78 (98)
T 4hcn_B           23 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   78 (98)
T ss_dssp             CEEEEEETT------CC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCB---S-
T ss_pred             EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHhCCChhHEEEEE-CCE------ECCCCCc---H-
Confidence            788888753      32  3567887     57899999999988763  22333332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-.+-||
T Consensus        79 -~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           79 -SDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             -GGGTCCTTEEEEEECBCSCC
T ss_pred             -HHCCCCCCCEEEEEEecCCC
Confidence             25678999999999999887

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=96.34  E-value=0.016  Score=35.20  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  ...++++     ...||.+|-+.+++...  ....+|+. .|+      +|-|+..   | 
T Consensus         1 M~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L-   56 (88)
T 4fbj_B            1 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKT---A-   56 (88)
T ss_dssp             CEEEEEETT------CC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTSB---T-
T ss_pred             CEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcChhHEEEEE-CCe------ECCCCCc---H-
Confidence            889998764      32  3567887     57899999999987653  22223332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-..-||
T Consensus        57 -~~~~i~~g~~l~l~~rl~Gg   76 (88)
T 4fbj_B           57 -ADYKILGGSVLHLVLALRGG   76 (88)
T ss_dssp             -TTTTCCTTCEEEEECBCC--
T ss_pred             -HHcCCCCCCEEEEEEECCCC
Confidence             25688999999999887776

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=96.20  E-value=0.013  Score=35.02  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=46.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |  +.+.++++     ...||.+|-+.+++...  ....+|+. .|+      .+-+++.   | 
T Consensus         8 m~i~Vk~~~------g--~~~~~~v~-----~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk------~L~d~~t---L-   63 (87)
T 1wh3_A            8 IQVFVKNPD------G--GSYAYAIN-----PNSFILGLKQQIEDQQGLPKKQQQLEF-QGQ------VLQDWLG---L-   63 (87)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHHHHTCCCTTTEEEEE-TTE------ECCSSSB---H-
T ss_pred             EEEEEEcCC------C--CEEEEEeC-----CCChHHHHHHHHHHHhCCChHHEEEEE-CCE------EccCCCC---H-
Confidence            677777643      3  23567888     57899999999988762  22223322 122      1112211   1 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        64 -~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A           64 -GIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             -HHHTCCTTEEEEEEECSCCC
T ss_pred             -HHCCCCCCCEEEEEEeccCC
Confidence             24578899999999998887

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=96.18  E-value=0.018  Score=34.96  Aligned_cols=74  Identities=14%  Similarity=0.226  Sum_probs=43.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+-..+      +  ...++++     ...||.+|-+.+++..  |...-+|+.. |+      +|-|++   .| 
T Consensus        10 ~~i~v~~~~G------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk------~L~D~~---tL-   65 (88)
T 1sif_A           10 LQLFIKTLTG------K--TFTVEME-----PSDTIENLKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL-   65 (88)
T ss_dssp             CEEEEEETTS------C--EEEEECC-----TTSBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCTTS---BS-
T ss_pred             eEEEEEeCCC------C--EEEEEEC-----CCChHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCCC---cH-
Confidence            6777776554      2  3467787     5789999999998866  2223333322 22      122221   12 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++...-||
T Consensus        66 -~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A           66 -SDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             -GGGTCCTTCEEEEEC-----
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             24678999999999888887

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=95.84  E-value=0.027  Score=35.81  Aligned_cols=74  Identities=11%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.++++..  ..+.+|+. .|+      +|-+++   .| 
T Consensus        36 m~I~Vk~~~------G~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL-   91 (111)
T 3vdz_A           36 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   91 (111)
T ss_dssp             EEEEEECSS------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTS---BT-
T ss_pred             EEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCC---cH-
Confidence            677777643      32  3567887     57899999999988763  22333332 222      122222   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-.+-||
T Consensus        92 -~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           92 -SDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             -TTTTCCTTCEEEEEECCCC-
T ss_pred             -HHCCCCCCCEEEEEEecCCC
Confidence             24678999999999999887

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=95.73  E-value=0.034  Score=35.21  Aligned_cols=74  Identities=11%  Similarity=0.170  Sum_probs=45.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  ....+|+. .|+      .|-+++   .| 
T Consensus        36 m~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~---tL-   91 (111)
T 2ojr_A           36 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   91 (111)
T ss_dssp             EEEEEECSS------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCSSC---BT-
T ss_pred             EEEEEEcCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCCC---cH-
Confidence            567777542      32  3467787     57899999999988663  22223322 222      121221   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        92 -~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           92 -SDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             -TTTTCCTTCEEEEEECCCC-
T ss_pred             -HHcCCCCCCEEEEEEeCCCC
Confidence             24678899999999999998

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=95.70  E-value=0.023  Score=34.91  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+.        |+  ...++++     ...||.+|-+.+++...  ..+.+|+.. |+      .|-+++.   | 
T Consensus        20 m~I~Vk~--------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~t---L-   73 (93)
T 2l7r_A           20 MQLFVRA--------QE--LHTFEVT-----GQETVAQIKAHVASLEGIAPEDQVVLLA-GA------PLEDEAT---L-   73 (93)
T ss_dssp             CEEEEES--------SS--EEEEECC-----SSCBHHHHHHHHHHHHTCCGGGCEEEET-TE------ECCTTSB---H-
T ss_pred             EEEEEEC--------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCcChhHEEEEEC-CE------ECCCCCc---H-
Confidence            6788875        43  3467887     57899999999987653  222233322 22      1212221   1 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++..+-||
T Consensus        74 -~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           74 -GQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             -HHHTCCSSCEEEEECCCCCC
T ss_pred             -HHCCCCCCCEEEEEEecCCC
Confidence             24578999999999999998

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=95.46  E-value=0.07  Score=33.21  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+-  .-+  +.+.++++     ...||.+|-+.+.+...  ..+.+|+.. |+      +|-|+.  ..| 
T Consensus         8 m~I~Vk~~~~~--~~~--~~~~i~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-gk------~L~D~~--~tL-   68 (102)
T 1v5o_A            8 MLITVYCVRRD--LTE--VTFSLQVN-----PDFELSNFRVLCELESGVPAEEAQIVYM-EQ------LLTDDH--CSL-   68 (102)
T ss_dssp             EEEEEEECCCC--CCC--CEEEEEEC-----TTCBHHHHHHHHHHHTCCCGGGBCEEET-TE------EECCSS--SBH-
T ss_pred             EEEEEEECCCC--cCc--eEEEEEcC-----CCCCHHHHHHHHHHHHCcChHHeEEEEC-CE------ECCCCc--ccH-
Confidence            67888875221  122  34568888     57899999999988763  223334322 21      222221  111 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.+.-...||
T Consensus        69 -~~ygI~~g~~l~l~~~~~gg   88 (102)
T 1v5o_A           69 -GSYGLKDGDMVVLLQKDNVG   88 (102)
T ss_dssp             -HHHTCCTTEEEEECBCCCCC
T ss_pred             -HHCCCCCCCEEEEEECCCCC
Confidence             24578899999998777665

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=95.43  E-value=0.049  Score=31.88  Aligned_cols=73  Identities=12%  Similarity=0.029  Sum_probs=44.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...+      +  .+.++++     ...||.+|-+.+++..  |...-+|+. .|+      .+-+++.   | 
T Consensus         5 m~i~Vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L-   60 (79)
T 3phx_B            5 LSILVRNNKG------R--SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQLP---L-   60 (79)
T ss_dssp             EEEEEECTTS------C--EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---G-
T ss_pred             EEEEEEeCCC------C--EEEEEEC-----CcChHHHHHHHHHhhcCCCHHHEEEEE-CCE------ECCCCCc---H-
Confidence            6677765433      2  3567888     5789999999998765  322333332 222      1112222   2 


Q ss_pred             CccCccCCCCEEEEEecCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~G   98 (99)
                       .++.+++|+.|.++-.+-|
T Consensus        61 -~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B           61 -GEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -GGGTCCTTCEEEEEECCBC
T ss_pred             -HHCCCCCCCEEEEEEecCC
Confidence             3567899999999877665

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=95.36  E-value=0.038  Score=33.40  Aligned_cols=74  Identities=12%  Similarity=0.027  Sum_probs=43.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  ...++++     ...||.+|-+.+++...  ..+.+|+.. |+.      +-+++.   | 
T Consensus         5 m~I~Vk~~~------g~--~~~~~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk~------L~D~~t---L-   60 (88)
T 2hj8_A            5 LSILVRNNK------GR--SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTFE-GKP------LEDQLP---L-   60 (88)
T ss_dssp             EEEEEEETT------SC--EEEEEEE-----SSSBHHHHHHHHHHHTCSCTTTEEEESS-SSC------CCTTSB---H-
T ss_pred             EEEEEECCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHhCCChhHEEEEEC-CEE------CCCCCc---H-
Confidence            577777754      32  3457777     56899999999988752  223333322 221      112222   1 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        61 -~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A           61 -GEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             -HHHHCSTTCEEEEEEC----
T ss_pred             -HHcCCCCCCEEEEEEEcCCC
Confidence             24578899999998887776

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=95.27  E-value=0.053  Score=32.47  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=46.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+...      |+ +.+.+ +++     ...||.+|-+.+++...  ....+|+. .|+      .+-+++.+   
T Consensus         8 m~i~Vk~~~------g~-~~~~l~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk------~L~d~~tL---   65 (89)
T 1wy8_A            8 MWIQVRTID------GS-KTCTIEDVS-----RKATIEELRERVWALFDVRPECQRLFY-RGK------QLENGYTL---   65 (89)
T ss_dssp             EEEEEEETT------CS-CEEEEEEEC-----TTCBHHHHHHHHHHHSCCCTTTEEEEE-TTE------ECCSSSBH---
T ss_pred             EEEEEEECC------CC-ceEEEEecC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCe------ECCCCCCH---
Confidence            677887753      31 23567 488     57899999999988762  22223332 222      11122211   


Q ss_pred             CCccCccCCCCEEEEEecCCCC
Q 034276           78 GQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                        .++.+++|+.|.++....||
T Consensus        66 --~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A           66 --FDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             --HHHTCCTTCEEEEEECCCCS
T ss_pred             --HHCCCCCCCEEEEEEeCCCC
Confidence              24578999999999888876

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=95.20  E-value=0.02  Score=33.67  Aligned_cols=64  Identities=16%  Similarity=0.060  Sum_probs=38.8

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      .+.+++.     ...||.+|-+.++++..-...           ..-++.+|+..+.-. =.++.+++||.|.++-..-|
T Consensus        15 ~~~~~v~-----~~~tv~~lk~~i~~~~gi~~~-----------~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G   78 (79)
T 2uyz_B           15 EIHFKVK-----MTTHLKKLKESYCQRQGVPMN-----------SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   78 (79)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHHTCCGG-----------GEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHHCCCcc-----------cEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            3567777     568999999999886521110           111233443322110 12457889999999999988


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        79 G   79 (79)
T 2uyz_B           79 G   79 (79)
T ss_dssp             -
T ss_pred             C
Confidence            7

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=95.20  E-value=0.066  Score=36.55  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|=+.+.++..  ..+.+|+. .|+      .|-+++.   | 
T Consensus         1 MqI~Vk~~~------Gk--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L-   56 (169)
T 3l0w_B            1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   56 (169)
T ss_dssp             CEEEEEETT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCTTSB---G-
T ss_pred             CEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHHCcCHHHEEEEE-CCc------cccCcCc---H-
Confidence            899998754      32  4568888     57899999999987653  22333332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        57 -~~y~I~~gstI~Lvlrl~GG   76 (169)
T 3l0w_B           57 -SDYNIQKESTLHLVLRLRGG   76 (169)
T ss_dssp             -GGGTCCTTCEEEEEECCCC-
T ss_pred             -HHcCCCCCCEEEEEEEeccc
Confidence             24678999999999888776

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=94.91  E-value=0.035  Score=34.32  Aligned_cols=75  Identities=16%  Similarity=0.054  Sum_probs=45.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-C
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-Q   79 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g   79 (99)
                      |+|+|+..      -|+  .+.+++.     ...||.+|-+.++++..-...           ..-++.+|+..+.-. =
T Consensus        22 m~I~Vk~~------~g~--~~~l~v~-----~~~tv~~lK~~i~~~~gip~~-----------~qrLif~Gk~L~d~~tl   77 (97)
T 1wyw_B           22 IKLKVIGQ------DSS--EIHFKVK-----MTTHLKKLKESYCQRQGVPMN-----------SLRFLFEGQRIADNHTP   77 (97)
T ss_dssp             EEEEEECT------TCC--EEEEEEE-----TTSCTHHHHHHHHHHHTCCGG-----------GEEEEETTEECCTTCCH
T ss_pred             EEEEEEeC------CCC--EEEEEEC-----CCCcHHHHHHHHHHHHCCChh-----------hEEEEECCeEcCCCCCH
Confidence            45666543      343  3467777     568999999999886531110           112233443322110 1


Q ss_pred             ccCccCCCCEEEEEecCCCC
Q 034276           80 LDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        80 ~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .++-+++||.|.++-..-||
T Consensus        78 ~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           78 KELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             HHHTCCTTCEEEEEESSSCC
T ss_pred             HHCCCCCCCEEEEEEecCCC
Confidence            24578999999999999988

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=94.79  E-value=0.11  Score=31.76  Aligned_cols=69  Identities=19%  Similarity=0.275  Sum_probs=43.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|+...      |+  ...++++     ...||.+|=+.+++.     .|..+-+|+. .|+      +|-+++.  
T Consensus         1 M~I~Vk~~~------g~--~~~~~v~-----~~~TV~~LK~~I~~~~~~~gip~~~qrLi~-~Gk------~L~D~~t--   58 (95)
T 1uel_A            1 MQVTLKTLQ------QQ--TFKIDID-----PEETVKALKEKIESEKGKDAFPVAGQKLIY-AGK------ILNDDTA--   58 (95)
T ss_dssp             CEEEEEETT------CC--EEEEECC-----TTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-TTE------ECCTTSB--
T ss_pred             CEEEEEeCC------CC--EEEEEEC-----CCCHHHHHHHHHHhhcccCCCChhhEEEEE-CCE------ECCCcCc--
Confidence            899998763      32  3467787     578999999999986     3433334433 232      2223222  


Q ss_pred             ecCCccCccCCCCEEEEEe
Q 034276           76 LSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p   94 (99)
                       |  .++.+++|+.|.++-
T Consensus        59 -L--~~ygI~~g~~i~l~~   74 (95)
T 1uel_A           59 -L--KEYKIDEKNFVVVMV   74 (95)
T ss_dssp             -G--GGGTCCSSSEEEEEE
T ss_pred             -H--HHCCCCCCCEEEEEE
Confidence             2  256788999997653

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=94.67  E-value=0.074  Score=37.28  Aligned_cols=74  Identities=9%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |+  .+.++++     ...||.+|-+.+++..  |....+|+. .|+      +|-+++.   | 
T Consensus       106 MqI~VKtl~------Gk--t~~l~V~-----~s~TV~~LK~kI~~~~gIp~~~QrLi~-~Gk------~L~D~~t---L-  161 (189)
T 3q3f_A          106 GQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-  161 (189)
T ss_dssp             EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTCB---G-
T ss_pred             eeeeeecCC------CC--EEEEEeC-----CCCcHHHHHHHHHhccCCCHHHEEEEE-CCE------ECCCCCC---H-
Confidence            677777642      32  4578888     5789999999998765  333333432 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-.+-||
T Consensus       162 -~dygI~~gstI~LvlrlrGG  181 (189)
T 3q3f_A          162 -SDYNIQKESTLHLVLRLRGG  181 (189)
T ss_dssp             -GGGTCCTTCEEEECCCCCCC
T ss_pred             -HHCCCCCCCEEEEEEEcCCC
Confidence             25678999999999888876

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=94.62  E-value=0.29  Score=30.18  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=43.7

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-.           ...+-++-+|+.+.--+ =.+.-+++||.|.++...-|
T Consensus        17 ~v~~~vk-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g   80 (91)
T 2io0_B           17 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   80 (91)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHTTCC-----------STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            4567787     5789999999999865321           12444555777664332 12336889999999997777


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        81 g   81 (91)
T 2io0_B           81 G   81 (91)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=94.54  E-value=0.23  Score=30.75  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=43.7

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-..           ..+-++-+|+.++.-+ =.+.-+++||.|.++...-|
T Consensus        19 ~i~~~v~-----~~t~l~kl~~~y~~~~gi~~-----------~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G   82 (94)
T 2io1_B           19 VVQFKIK-----RHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   82 (94)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred             EEEEEEC-----CCCHHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            4567787     57899999999998654211           2444555676654432 22347899999999987766


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        83 G   83 (94)
T 2io1_B           83 G   83 (94)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=94.32  E-value=0.17  Score=32.67  Aligned_cols=74  Identities=11%  Similarity=0.172  Sum_probs=45.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  .....|+.. |.      ++-++..   | 
T Consensus         1 M~i~vk~~~------g~--~~~~~v~-----~~~tv~~lK~~i~~~~gip~~~q~L~~~-g~------~L~d~~t---L-   56 (152)
T 3b08_A            1 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRT---L-   56 (152)
T ss_dssp             CEEEEEETT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSB---T-
T ss_pred             CEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcChHHeEEEEC-Ce------ECcCccc---H-
Confidence            889998764      32  3467887     57899999999988763  222233322 22      1212222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++....||
T Consensus        57 -~~~~i~~~~~l~l~~~~~~~   76 (152)
T 3b08_A           57 -SDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             -GGGTCCTTCEEEEEECCTTC
T ss_pred             -HHhccCCCCeeEEEeecccc
Confidence             24578899999888766553

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=94.21  E-value=0.12  Score=31.12  Aligned_cols=69  Identities=7%  Similarity=0.100  Sum_probs=42.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  ..+.+|+. .|+      .+-++..   | 
T Consensus        18 m~i~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L-   73 (91)
T 3v6c_B           18 MQIFVNTLT------GT--HITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   73 (91)
T ss_dssp             EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCB---T-
T ss_pred             EEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHhhhCCChhhEEEEE-CCe------ECCCcCc---H-
Confidence            677777643      32  3567887     57899999999988753  22333433 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.++-
T Consensus        74 -~~~gi~~g~~i~l~~   88 (91)
T 3v6c_B           74 -SDYNIQKESTLHLVL   88 (91)
T ss_dssp             -GGGTCCTTCEEEEEC
T ss_pred             -HHCCCCCCCEEEEEE
Confidence             256789999998864

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=94.18  E-value=0.35  Score=29.77  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=42.1

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-.           ...+-++-+|+.+..-+ =.+.-+++||.|.++...-|
T Consensus        29 ~i~~~v~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           29 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             EEEEEEE-----TTSCHHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred             EEEEEEc-----cCCHHHHHHHHHHHHhCCC-----------ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            4567777     5689999999999865421           12444666777665432 12346899999999998887


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        93 G   93 (93)
T 2d07_B           93 G   93 (93)
T ss_dssp             -
T ss_pred             C
Confidence            7

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=93.97  E-value=0.18  Score=32.55  Aligned_cols=63  Identities=10%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      ...++++     ...||.+|-+.++++.  |....+++. .|.      .|-|++.   |  .++.+++|+.|.++...-
T Consensus        88 ~~~~~v~-----~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~------~L~d~~t---L--~~~~i~~~~~i~l~~r~~  150 (152)
T 3b08_A           88 TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L--SDYNIQKESTLHLVLRLR  150 (152)
T ss_dssp             EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T--GGGTCCTTCEEEEEECCC
T ss_pred             EEEEEeC-----CCCcHHHHHHHHHHHhCcChhhEEEEE-CCE------ECCCCCC---H--HHcCCCCCCEEEEEEecC
Confidence            3567787     5789999999998865  322333332 222      1212222   2  245789999999999998


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus       151 GG  152 (152)
T 3b08_A          151 GG  152 (152)
T ss_dssp             C-
T ss_pred             CC
Confidence            88

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=93.95  E-value=0.2  Score=29.41  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.++++     .|..+-+|+. .|+      +|-|++.  
T Consensus         6 m~i~vk~~~------g~--~~~~~v~-----~~~TV~~lK~~i~~~~~~~gip~~~qrLi~-~Gk------~L~D~~t--   63 (85)
T 2wyq_A            6 VTITLKTLQ------QQ--TFKIRME-----PDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVP--   63 (85)
T ss_dssp             EEEEEEETT------SC--EEEEEEC-----TTSBHHHHHHHHHHHHCTTTCCGGGEEEEE-TTE------ECCTTSB--
T ss_pred             EEEEEEECC------CC--EEEEEEC-----CCCCHHHHHHHHHhhccccCCCHHHeEEEE-CCE------ECcCCCC--
Confidence            567777653      32  3467887     578999999999986     3333334433 232      2223322  


Q ss_pred             ecCCccCccCCCCEEEEEe
Q 034276           76 LSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p   94 (99)
                       |  .++.+++|+.|.++-
T Consensus        64 -L--~~~~i~~g~~i~l~~   79 (85)
T 2wyq_A           64 -I--RDYRIDEKNFVVVMV   79 (85)
T ss_dssp             -G--GGGCCCTTSEEEEEE
T ss_pred             -H--HHcCCCCCCEEEEEE
Confidence             2  246788999988763

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=93.74  E-value=0.23  Score=33.25  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |  +.+.++++     ...||.+|=+.+.+...  ..+.+|+.. |.      .+-+++   .| 
T Consensus        21 m~i~Vk~~~------g--~~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~QrL~~~-g~------~L~d~~---tL-   76 (172)
T 3u30_A           21 MQIFVKTLT------G--KTITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL-   76 (172)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTC---BT-
T ss_pred             EEEEEEeCC------C--CEEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEEC-Cc------cccccC---CH-
Confidence            678887643      3  23578888     57899999999987653  323334322 22      122222   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        77 -~~~~i~~~~~l~l~~~~~gg   96 (172)
T 3u30_A           77 -SDYNIQKESTLHLVLRLRGG   96 (172)
T ss_dssp             -GGGTCCTTCEEEEEECCCCC
T ss_pred             -hHcCCcccceeeeeeccccc
Confidence             25678899999888776654

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=93.69  E-value=0.3  Score=27.97  Aligned_cols=60  Identities=8%  Similarity=0.100  Sum_probs=36.3

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v   96 (99)
                      .+.++++     ...||.+|-+.+++...  ...-+|+. .|+      .+-|++.   |  .++.+++|+.|.++..-
T Consensus        15 ~~~~~v~-----~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk------~L~d~~t---L--~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A           15 KWEVNVA-----PESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQT---V--ESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T--GGGTCCTTCEEEEEECC
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHhCCCHHHEEEEE-CCe------EcCCCCC---H--HHcCCCCCCEEEEEEcC
Confidence            3568888     57899999999987652  22223332 222      1222222   2  24578899999887643

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=93.65  E-value=0.15  Score=31.91  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  ...++++     ...||.+|=+.+.+...  ..+.+|+. .|+      +|-|++   .| 
T Consensus         2 m~I~Vk~~~g------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL-   57 (106)
T 3m62_B            2 VSLTFKNFKK------E--KVPLDLE-----PSNTILETKTKLAQSISCEESQIKLIY-SGK------VLQDSK---TV-   57 (106)
T ss_dssp             -CEEEECTTC------C--EEEECCC-----TTSBHHHHHHHHHHTTTSCGGGCEEEE-TTE------ECCTTS---BT-
T ss_pred             EEEEEEeCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCCChhhEEEEE-CCE------ECCCcC---CH-
Confidence            7888886533      2  3567777     57899999999988763  22223332 232      222222   22 


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++-+++|+.|.++
T Consensus        58 -~~~~i~~g~~i~lv   71 (106)
T 3m62_B           58 -SECGLKDGDQVVFM   71 (106)
T ss_dssp             -TTTTCCTTCEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             25678999999887

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=93.65  E-value=0.13  Score=31.23  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC----cccccccccCCccccceEEEEcCcccee
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI----KERPEMFMKGDSVRPGVLVLVNDCDWEL   76 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~----~~~~~l~~~~g~l~~~v~ilvNg~di~~   76 (99)
                      |+|+|+...+      ....++++++     ...||.+|=+.+.+..|    ..+.+|+.. |+      +|-+++.+  
T Consensus         8 m~i~Vk~~~~------~~~~~~v~v~-----~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~-Gk------~L~D~~tL--   67 (93)
T 1wgd_A            8 VTLLVKSPNQ------RHRDLELSGD-----RGWSVGHLKAHLSRVYPERPRPEDQRLIYS-GK------LLLDHQCL--   67 (93)
T ss_dssp             CEEEEECSSS------SCCCEEEECC-----TTSCHHHHHHHHHHHSTTCCCTTTCEEEET-TE------ECCSSSCH--
T ss_pred             EEEEEEeCCC------CeEEEEEecC-----CCCcHHHHHHHHHHHhcCCCChHHeEEEEC-CE------ECcCcCCH--
Confidence            6788886643      2123567776     57899999999998652    223333322 22      22233222  


Q ss_pred             cCCccC--ccCCCCEEEEEecCCCC
Q 034276           77 SGQLDT--TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        77 l~g~~t--~L~dgD~V~i~p~v~GG   99 (99)
                         .++  .+++|+.|.++-..-||
T Consensus        68 ---~~~~~~i~~~~~i~lv~~~~gg   89 (93)
T 1wgd_A           68 ---RDLLPKQEKRHVLHLVCNVKSG   89 (93)
T ss_dssp             ---HHHSCSSSCSEEEEEECCCCCC
T ss_pred             ---HHHhcCCCCCCEEEEEeCCCCC
Confidence               134  67899999988776665

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=93.22  E-value=0.53  Score=29.98  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-.           ...+-++-+|+.+.--+ =.+.-+++||.|.++...-|
T Consensus        42 ~i~fkIk-----~tt~l~kL~~ay~ek~gi~-----------~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G  105 (106)
T 2eke_C           42 EIFFKIK-----KTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG  105 (106)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred             EEEEEeC-----CCCHHHHHHHHHHHHhCCC-----------cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence            4567777     5689999999999865421           12444555777665332 12336889999999998877


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus       106 G  106 (106)
T 2eke_C          106 G  106 (106)
T ss_dssp             -
T ss_pred             C
Confidence            6

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=93.12  E-value=0.29  Score=29.65  Aligned_cols=69  Identities=10%  Similarity=0.010  Sum_probs=40.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+...      |  +.+.++++     ...||.+|-+.+.+..+...+-+|  .|+      +|-++ + ..|  .
T Consensus         8 m~i~Vk~~~------g--~~~~~~v~-----~~~TV~~LK~~i~~~~~~~qrLi~--~Gk------~L~D~-~-~tL--~   62 (95)
T 1wia_A            8 INVRLKFLN------D--TEELAVAR-----PEDTVGTLKSKYFPGQESQMKLIY--QGR------LLQDP-A-RTL--S   62 (95)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHSSSTTTTCEEEE--TTE------ECCCS-S-CBT--T
T ss_pred             EEEEEEeCC------C--CEEEEEEC-----CCCcHHHHHHHHHhhCcCcEEEEE--CCE------EccCC-c-CCH--H
Confidence            677777542      3  23567888     578999999999876622222222  122      22222 0 112  2


Q ss_pred             cCccCCCCEEEEEe
Q 034276           81 DTTLEEKDVVVFIS   94 (99)
Q Consensus        81 ~t~L~dgD~V~i~p   94 (99)
                      ++.+++|+.|.++-
T Consensus        63 ~y~i~~g~~i~l~~   76 (95)
T 1wia_A           63 SLNITNNCVIHCHR   76 (95)
T ss_dssp             TTTCCTTEEEEEEC
T ss_pred             HcCCCCCCEEEEEE
Confidence            56788999998874

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=93.11  E-value=0.017  Score=37.64  Aligned_cols=74  Identities=12%  Similarity=0.184  Sum_probs=0.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |.  .+.++++     ...||.+|-+.+.+..  |.....|+. .|.      +|-++.   .| 
T Consensus         1 M~I~Vk~~~------G~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL-   56 (128)
T 3u5e_m            1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL-   56 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHhCcChHHEEEEE-CCE------ECCCCC---ch-
Confidence            788887643      32  3456777     5689999999988765  222333332 222      122222   22 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++...-||
T Consensus        57 -~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m           57 -SDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             ---------------------
T ss_pred             -hhhccCCCCEEEEEEEcCCC
Confidence             24678999999998877776

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}

Probab=93.02  E-value=0.36  Score=30.36  Aligned_cols=48  Identities=31%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEE-------cCccceecCCccCccCCCCEEEEEecC
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLV-------NDCDWELSGQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilv-------Ng~di~~l~g~~t~L~dgD~V~i~p~v   96 (99)
                      .++||.|+-..+-......             +..-+|       |++.+    |++++|+|||.|.|+..-
T Consensus        34 ~GsTv~Dfa~~IH~di~~~-------------fkyA~VwG~saK~~~qrV----gldh~L~d~DVV~Iv~~~   88 (93)
T 2eki_A           34 SRTTVEDFCMKIHKNLIKE-------------FKYALVWGLSVKHNPQKV----GKDHTLEDEDVIQIVKKS   88 (93)
T ss_dssp             TSCCHHHHHHHHCTTCTTT-------------EEEEEEBSTTSSSSSEEE----CSSCCCCSSEEECEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhh-------------ccEEEEecccccCCCEEC----CCCcEecCCCEEEEEeCC
Confidence            7999999998885433221             112233       45444    789999999999998763

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=92.95  E-value=0.51  Score=29.83  Aligned_cols=64  Identities=8%  Similarity=0.050  Sum_probs=41.5

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-...           .+-++.+|+.+..-+ =.+.-+++||.|.++...-|
T Consensus        36 ~i~~kVk-----~~t~l~kL~~~y~ek~gi~~~-----------~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G   99 (104)
T 1wz0_A           36 VVQFKIK-----RHTPLSKLMKAYCERQGLSMR-----------QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS   99 (104)
T ss_dssp             EEEEEEC-----TTSCHHHHHHHHHHHHTCCTT-----------TSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred             EEEEEEc-----CCChHHHHHHHHHHHhCCCcc-----------eEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            4567887     578999999999987642211           222333454443221 12346899999999988777


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus       100 G  100 (104)
T 1wz0_A          100 G  100 (104)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.80  E-value=0.25  Score=28.60  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+++...  ...-+|+.. |+      .+-+++.   | 
T Consensus         8 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~LK~~i~~~~~i~~~~qrL~~~-gk------~L~d~~t---L-   63 (81)
T 2dzi_A            8 MQLTVKALQ------GR--ECSLQVP-----EDELVSTLKQLVSEKLNVPVRQQRLLFK-GK------ALADGKR---L-   63 (81)
T ss_dssp             EEEEEEETT------SC--EEEEEEC-----SSCBHHHHHHHHHHHTCCCTTTCEEEET-TE------ECCTTSB---G-
T ss_pred             EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHEEEEEC-Ce------ECCCCCc---H-
Confidence            677887543      32  3467888     57899999999988663  222233322 22      1112222   2 


Q ss_pred             CccCccCCCCEEEEEec
Q 034276           79 QLDTTLEEKDVVVFIST   95 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~   95 (99)
                       .++.+++|+.|.++-.
T Consensus        64 -~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A           64 -SDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             -GGGTCCSSBCCEEECC
T ss_pred             -HHcCCCCCCEEEEEEe
Confidence             2457789998877643

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=92.59  E-value=0.31  Score=32.04  Aligned_cols=63  Identities=14%  Similarity=0.019  Sum_probs=38.7

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.++++     ...||.+|=+.+.++.  |...-+|+. .|+      +|-+++.   |  .++-+++|+.|.++-..-
T Consensus        93 ~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~------~L~d~~t---L--~~y~i~~g~~l~l~~rl~  155 (159)
T 3rt3_B           93 SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQLP---L--GEYGLKPLSTVFMNLRLR  155 (159)
T ss_dssp             EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---G--GGGTCCTTCEEEEEECCC
T ss_pred             EEEEEeC-----CCCCHHHHHHHHHHHHCCCHHHEEEEE-CCe------ecCCCCC---H--HHcCCCCCCEEEEEEecC
Confidence            4578888     5789999999998765  332323332 222      2222222   2  356799999999997777


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus       156 GG  157 (159)
T 3rt3_B          156 GG  157 (159)
T ss_dssp             --
T ss_pred             CC
Confidence            76

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=92.56  E-value=0.15  Score=30.97  Aligned_cols=73  Identities=11%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..       |+  .+.++++     ...||.+|-+.+.+...  ..+.+|+. .|+      +|-+++.   | 
T Consensus        18 m~i~Vk~~-------g~--~~~~~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L-   72 (96)
T 1wx8_A           18 IRVSVKTP-------QD--CHEFFLA-----ENSNVRRFKKQISKYLHCNADRLVLIF-TGK------ILRDQDI---L-   72 (96)
T ss_dssp             EEEEEECS-------SS--EEEEEEE-----TTCCHHHHHHHHHHHTCSCTTTBCCEE-TTE------ECCTTSC---H-
T ss_pred             EEEEEEEC-------Ce--EEEEEEC-----CCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCcCC---H-
Confidence            56777664       43  3467777     57899999999988762  22223332 222      1222222   1 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        73 -~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           73 -SQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             -HHHTCCTTEEEECCBCCSSC
T ss_pred             -HHCCCCCCCEEEEEEeCCCC
Confidence             24578899999988777765

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=92.53  E-value=0.17  Score=30.43  Aligned_cols=69  Identities=12%  Similarity=0.092  Sum_probs=41.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+      +  ..+++++     ...||.+|=+.+.+..  |..+.+|+.. |+.     ++-|++.+    
T Consensus        11 ~~i~vk~l~g------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk~-----lL~D~~tL----   67 (84)
T 2kk8_A           11 MKFLVENLNG------S--SFELEVD-----YRDTLLVVKQKIERSQHIPVSKQTLIVD-GIV-----ILREDLTV----   67 (84)
T ss_dssp             EEEEEEETTS------C--EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEET-TEE-----CCCSSSBH----
T ss_pred             eEEEEEecCC------c--EEEEEEC-----CCChHHHHHHHHHHHHCcChHHEEEEEC-CEE-----ecCCcCCH----
Confidence            7888888754      2  3467888     5789999999998875  3333334322 221     02222222    


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++.+++|+.|.++
T Consensus        68 -~~y~I~~gs~i~lv   81 (84)
T 2kk8_A           68 -EQCQIVPTSDIQLE   81 (84)
T ss_dssp             -HHHTCCTTSCEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             24567889888764

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=92.49  E-value=0.43  Score=29.87  Aligned_cols=63  Identities=6%  Similarity=0.066  Sum_probs=40.8

Q ss_pred             EEEEEeCCCCCCC-cchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276           20 VHNVDVVPPKGSE-KLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        20 ~~~vev~~~~~~~-~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v   96 (99)
                      .+.++++     . ..||.+|=+.+.+..  |....+|+. .|.      ++-+++   .|  .++.+++|+.|.++-..
T Consensus        42 ~~~l~v~-----~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~---tL--~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           42 FMEITVQ-----SLSENVGSLKEKIAGEIQIPANKQKLSG-KAG------FLKDNM---SL--AHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             CEEEEES-----CSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSS------BCCTTS---BT--TTTTCSSSCEEEEECSS
T ss_pred             EEEEEec-----CCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCCC---cH--HHCCCCCCCEEEEEEEc
Confidence            3567887     5 689999999998875  333334433 232      111222   22  35678999999999888


Q ss_pred             CCC
Q 034276           97 HGG   99 (99)
Q Consensus        97 ~GG   99 (99)
                      .||
T Consensus       105 ~GG  107 (111)
T 1we6_A          105 RSG  107 (111)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            887

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=92.13  E-value=0.22  Score=31.71  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=45.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCC-------ccccceEEEEcCcc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD-------SVRPGVLVLVNDCD   73 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g-------~l~~~v~ilvNg~d   73 (99)
                      |+|+|+-      +-|+  +++++|+     ...||.+|=+++.++..-...   ...|       -+.+..-+.-+|+-
T Consensus         8 M~I~Vk~------l~g~--~~~v~V~-----~~~TV~dLK~~I~~~~~i~~~---~q~g~~~isw~~~w~q~~Li~~Gk~   71 (105)
T 1v2y_A            8 MTVRVCK------MDGE--VMPVVVV-----QNATVLDLKKAIQRYVQLKQE---REGGVQHISWSYVWRTYHLTSAGEK   71 (105)
T ss_dssp             EEEEEEC------SSSC--EEEEEEC-----TTCBHHHHHHHHHHHHHHHHH---HTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred             EEEEEEe------cCCC--EEEEEEC-----CCChHHHHHHHHHHHhCCCcc---cccCcceeeeeecceeEEEEeCCcC
Confidence            7788873      3343  4678888     579999999998876521000   0000       00011112223432


Q ss_pred             cee--cCCccCccCCCCEEEEEecCCC
Q 034276           74 WEL--SGQLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        74 i~~--l~g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ..-  -.=.++-+++||.|.|+..+-|
T Consensus        72 L~dD~~tL~dygI~~g~~l~lv~~lr~   98 (105)
T 1v2y_A           72 LTEDRKKLRDYGIRNRDEVSFIKKLGQ   98 (105)
T ss_dssp             ECCSSSBHHHHTCCSSEEEEEEECSCS
T ss_pred             ccCCcCCHHHcCCCCCCEEEEEehhcc
Confidence            210  0013568999999999987765

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.97  E-value=0.33  Score=31.47  Aligned_cols=73  Identities=7%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..       |+  .+.++++     ...||.+|-+.+.+...  ..+.+|+. .|+      +|-|++.   | 
T Consensus        33 m~I~Vk~~-------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L-   87 (125)
T 1j8c_A           33 IKVTVKTP-------KE--KEEFAVP-----ENSSVQQFKEAISKRFKSQTDQLVLIF-AGK------ILKDQDT---L-   87 (125)
T ss_dssp             EEEEEECS-------SC--EEEEEEC-----TTCCHHHHHHHHHHHHCSCSSSEEEEE-TTE------EESTTSC---G-
T ss_pred             EEEEEEeC-------Ce--EEEEEEC-----CCCcHHHHHHHHHHHHCcCcceEEEEE-CCE------EcCCCCC---H-
Confidence            56777663       33  3467887     57899999999988653  22333332 222      2223222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        88 -~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           88 -IQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             -GGTTCSSSEEEEEEEC----
T ss_pred             -HHcCCCCCCEEEEEeccCCC
Confidence             35678899999998776665

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=91.90  E-value=0.03  Score=37.98  Aligned_cols=74  Identities=12%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |.  .+.++++     ...||.+|-+.+.+..  |.....|+. .|.      +|-++..   | 
T Consensus         1 MqI~VK~l~------G~--~~~l~V~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L-   56 (152)
T 3u5c_f            1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L-   56 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------EccccCc---H-
Confidence            778777653      22  2456777     5789999999888765  222333332 222      1223222   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++|+.|.++..+-||
T Consensus        57 -~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f           57 -SDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             ---------------------
T ss_pred             -HHcCCCCCCEEEEEeeccCC
Confidence             24678899999998888776

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=91.69  E-value=1.1  Score=25.87  Aligned_cols=58  Identities=7%  Similarity=0.024  Sum_probs=38.3

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~   93 (99)
                      ++.+.+.     ...+++.|.++.+++..-.           ...+-.+-+|+.+..-+ =.+.-+++||.|.++
T Consensus        13 ~v~~~v~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A           13 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEEC-----TTSCTHHHHHHHHHHHTCC-----------TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            4578887     5789999999999865321           12344555776664432 123368899999876

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=90.90  E-value=0.034  Score=32.26  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...+      .  ...++++     ...||.+|-+.+++..  |...-.|+. .|+      .+-++..   | 
T Consensus         1 M~i~Vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk------~L~d~~t---L-   56 (76)
T 3b1l_X            1 MIVFVRFNSS------Y--GFPVEVD-----SDTSILQLKEVVAKQQGVPADQLRVIF-AGK------ELPNHLT---V-   56 (76)
Confidence            7888886432      2  2356676     5689999999888765  222223332 222      1222222   2 


Q ss_pred             CccCccCCCCEEEEEecCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~G   98 (99)
                       .++.+++|+.|.++...-|
T Consensus        57 -~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X           57 -QNCDLEQQSIVHIVQRPRR   75 (76)
Confidence             2467889999988776544

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=91.47  E-value=0.54  Score=28.91  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEE-EEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVH-NVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~-~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+..       | + .+ +++++     ...||.+|-+.|.+..  |..+.+|+. .|+      +|-++    .|
T Consensus         8 m~i~Vk~~-------g-~-~~~~l~v~-----~~~TV~~lK~~I~~~tgip~~~QkLi~-~Gk------~L~D~----tL   62 (96)
T 1wgg_A            8 YSVTVKWG-------K-E-KFEGVELN-----TDEPPMVFKAQLFALTGVQPARQKVMV-KGG------TLKDD----DW   62 (96)
T ss_dssp             EEEEEEET-------T-E-EEEEEEEE-----SSSCHHHHHHHHHHHTCCCTTTSCCEE-TTE------ECCSS----CC
T ss_pred             EEEEEEEC-------C-E-EEEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCc------CCCCC----CH
Confidence            56777742       2 2 35 47888     5789999999998766  333434443 232      11122    22


Q ss_pred             CCccCccCCCCEEEEE
Q 034276           78 GQLDTTLEEKDVVVFI   93 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~   93 (99)
                        .++.+++|+.|.++
T Consensus        63 --~~~~I~~g~~i~l~   76 (96)
T 1wgg_A           63 --GNIKMKNGMTVLMM   76 (96)
T ss_dssp             --CSCCCCSSCEEECC
T ss_pred             --HHCCCCCCCEEEEE
Confidence              24567888888765

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=91.46  E-value=0.9  Score=27.71  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=44.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcC-ccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVND-CDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg-~di~~l   77 (99)
                      |+|.|+..+      |   ..+++++     ...||.+|=+.+.+..  |..+.+|+. .|+      +|-|+ +.+   
T Consensus        16 ~~I~Vk~~~------~---~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~~tL---   71 (94)
T 2kan_A           16 IHVTVKFPS------K---QFTVEVD-----RTETVSSLKDKIHIVENTPIKRMQLYY-SGI------ELADDYRNL---   71 (94)
T ss_dssp             EEEEEECSS------C---EEEEEEC-----TTCBHHHHHHHHHHHSSSCTTTEEEEE-TTE------EECCTTSBH---
T ss_pred             EEEEEEcCC------c---EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHEEEEE-CCE------ECCCCcccH---
Confidence            566666543      2   2457787     5789999999998865  333333332 222      22222 222   


Q ss_pred             CCccCccCCCCEEEEEecCCCC
Q 034276           78 GQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                        .++.+++|+.|.++-...||
T Consensus        72 --~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           72 --NEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             --HHHTCCTTEEEEEEECCCSS
T ss_pred             --HHCCCCCCCEEEEEEeCCCC
Confidence              24578899999998887776

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=91.44  E-value=0.5  Score=28.11  Aligned_cols=34  Identities=6%  Similarity=0.148  Sum_probs=25.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL   47 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~   47 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|-+.+.++.
T Consensus         6 m~i~Vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~   39 (90)
T 4dwf_A            6 LEVLVKTLD------SQ--TRTFIVG-----AQMNVKEFKEHIAASV   39 (90)
T ss_dssp             EEEEEEETT------CC--EEEEEEE-----TTCBHHHHHHHHHHHH
T ss_pred             EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHh
Confidence            678887753      32  3467777     5789999999998776

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=91.40  E-value=0.36  Score=29.92  Aligned_cols=73  Identities=7%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+       +  ..++++     ...||.+|-+.+++...  ..+.+|+. .|+      +|-|++.   | 
T Consensus        23 m~I~Vk~~~g-------~--~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L-   77 (100)
T 1yqb_A           23 IKVTVKTPKD-------K--EDFSVT-----DTCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPDS---L-   77 (100)
T ss_dssp             EEEEEECSSC-------E--EEEEEE-----TTCBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---H-
T ss_pred             EEEEEEcCCC-------c--EEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCc---H-
Confidence            5777777543       2  256777     56899999999987652  22223332 222      1212221   1 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        78 -~~ygI~~gstI~l~~r~~~~   97 (100)
T 1yqb_A           78 -AQCGVRDGLTVHLVIKRQHR   97 (100)
T ss_dssp             -HHHTCCTTCEEEEEECCCCS
T ss_pred             -HHCCCCCCCEEEEEEcCCCC
Confidence             24578899999998776664

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=91.29  E-value=0.73  Score=28.11  Aligned_cols=75  Identities=12%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCcccc-ceEEEEcCccceecCCc
Q 034276            2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRP-GVLVLVNDCDWELSGQL   80 (99)
Q Consensus         2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~-~v~ilvNg~di~~l~g~   80 (99)
                      +||+.|    +...++  .+++.+|     ...|++.|++.+.+.+.-.....  ++..+|= +=.+++.|.++-    .
T Consensus         6 ~ITidl----~~y~~~--~~DLRIP-----~~~tvK~Li~~l~ea~~l~~~~~--~~~~irv~NK~~~L~~~~~L----~   68 (81)
T 2bps_A            6 DITIDL----KHYNGS--VFDLRLS-----DYHPVKKVIDIAWQAQSVSMPPR--EGHWIRVVNKDKVFSGECKL----S   68 (81)
T ss_dssp             EEEEEC----TTTTCC--EEEEEEE-----TTSBTTHHHHHHHHHSCCCSCCC--TTCEEEEGGGTEEEETTSBT----G
T ss_pred             EEEEEe----eccCCc--eEEEECC-----CchhHHHHHHHHHHHhCCCcCCC--CCCEEEEecCCEEEcCCCEE----e
Confidence            456655    344553  5688899     68999999999999874322111  1111110 111233333331    2


Q ss_pred             cCccCCCCEEEEE
Q 034276           81 DTTLEEKDVVVFI   93 (99)
Q Consensus        81 ~t~L~dgD~V~i~   93 (99)
                      ++++.+||.+.|.
T Consensus        69 d~~ItnGD~Leil   81 (81)
T 2bps_A           69 DCGITNGDRLEIL   81 (81)
T ss_dssp             GGTCCTTCEEEEC
T ss_pred             eCCcCCCCEEEEC
Confidence            7899999998763

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=91.23  E-value=0.96  Score=25.95  Aligned_cols=71  Identities=11%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEE-eCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVD-VVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~ve-v~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|.|+...      |+ ..+.++ ++     ...||.+|-+.+++...  ....+|+. .|.      .+-+++   .|
T Consensus         3 m~i~Vk~~~------g~-~~~~l~~v~-----~~~tv~~lK~~i~~~~gip~~~qrL~~-~g~------~L~d~~---tL   60 (78)
T 2faz_A            3 MWIQVRTMD------GR-QTHTVDSLS-----RLTKVEELRRKIQELFHVEPGLQRLFY-RGK------QMEDGH---TL   60 (78)
T ss_dssp             EEEEEEETT------SS-CEEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTC---BT
T ss_pred             EEEEEEECC------CC-EEEEEeccC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCCC---CH
Confidence            778888763      32 213677 87     57899999999988653  22223332 222      121222   22


Q ss_pred             CCccCccCCCCEEEEEec
Q 034276           78 GQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~   95 (99)
                        .++.+++|+.|.++..
T Consensus        61 --~~~~i~~g~~i~l~~r   76 (78)
T 2faz_A           61 --FDYEVRLNDTIQLLVR   76 (78)
T ss_dssp             --TTTTCCTTCEEEEEEC
T ss_pred             --HHcCCCCCCEEEEEEe
Confidence              2567889999988754

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.23  E-value=0.3  Score=30.35  Aligned_cols=73  Identities=7%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...+       +  +.++++     ...||.+|-+.|.+...  ..+.+|+. .|+      +|-|++.+    
T Consensus        18 m~I~Vk~~~g-------~--~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~tL----   72 (106)
T 1wx7_A           18 IKVTVKTPKD-------K--EDFSVT-----DTCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPDSL----   72 (106)
T ss_dssp             EEEEEECSSC-------E--EEEEEE-----TTCCHHHHHHHHHHHHTCCTTTEEEEE-TTE------ECCTTSCH----
T ss_pred             EEEEEEeCCC-------c--EEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCcH----
Confidence            6777877542       2  356777     56899999999987652  22223322 122      12122211    


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++.+++|+.|.++-...||
T Consensus        73 -~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           73 -AQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             -HHHTCCTTEEEEEEECCCCC
T ss_pred             -HHcCCCCCCEEEEEEcCCCC
Confidence             24578899999998776664

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=90.83  E-value=1.6  Score=28.54  Aligned_cols=71  Identities=10%  Similarity=0.132  Sum_probs=42.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccccccc-ccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMF-MKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~-~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+...      |+  .+.++++     +..||.++=+.+.+..  |..+.+|+ .+.|..      |-+++.   |
T Consensus         3 m~i~vk~~~------g~--~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~------L~d~~t---L   60 (159)
T 3rt3_B            3 WDLTVKMLA------GN--EFQVSLS-----SSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA------LQDRVP---L   60 (159)
T ss_dssp             CEEEEEETT------SC--EEEEECC-----TTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB------CCTTSC---G
T ss_pred             eEEEEEECC------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC------CCCCCC---H
Confidence            688888653      32  3567887     5789999988888765  33333443 322321      112221   1


Q ss_pred             CCccCccCCCCEEEEEec
Q 034276           78 GQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~   95 (99)
                        .++.+++|+.|.++-.
T Consensus        61 --~~y~i~~~~~l~l~~~   76 (159)
T 3rt3_B           61 --ASQGLGPGSTVLLVVD   76 (159)
T ss_dssp             --GGGTCCTTCEEEEEEC
T ss_pred             --HHcCCCCCCEEEEEcc
Confidence              3567888888877654

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=90.80  E-value=1.2  Score=28.17  Aligned_cols=63  Identities=11%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      ...++++     ...||.+|-+.+++..  |..+.+|+.. |+      .|-++   ..|  .++.+++|+.|.++-...
T Consensus        21 ~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~---~tL--~~ygI~~gstI~l~~~~~   83 (114)
T 2kdi_A           21 TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIWA-GK------QLEDG---RTL--SDYNIQRESTLHLVLRLR   83 (114)
T ss_dssp             EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTT---CBT--TTTTCCSSCEEEEEECCC
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCC---CcH--HHCCCCCCCEEEEEEEcC
Confidence            3567887     5789999999998865  3333334322 22      12122   222  256788999999988877


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus        84 GG   85 (114)
T 2kdi_A           84 GG   85 (114)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=90.56  E-value=0.66  Score=28.82  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=40.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+...      |  +.+.++++     ...||.+|-+.++++..  ..+.+|+. .|+      .|-+++.   | 
T Consensus        24 m~I~Vk~~~------g--~~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L-   79 (106)
T 1ttn_A           24 CQLRLRLST------G--KDLKLVVR-----STDTVFHMKRRLHAAEGVEPGSQRWFF-SGR------PLTDKMK---F-   79 (106)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----TTSHHHHHHHHHHHTTCCCSTTCEEEE-TTE------ECCTTSH---H-
T ss_pred             EEEEEEcCC------C--CEEEEEeC-----CCCcHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCCCc---H-
Confidence            677777654      3  23567888     57899999999988653  22223332 122      1112211   1 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++.+++|+.|.++-
T Consensus        80 -~~ygI~~g~ti~lv~   94 (106)
T 1ttn_A           80 -EELKIPKDYVVQVIV   94 (106)
T ss_dssp             -HHCCCSSSCEEEEEC
T ss_pred             -HHcCCCCCCEEEEEE
Confidence             246788999987764

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=90.46  E-value=1  Score=28.01  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHH-HHh--cCcccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWV-GTN--LIKERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L-~~~--~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+...      |+...++++++     ...||.+|=+.+ .+.  +|..+.+|+. .|+      +|-+++.+   
T Consensus        20 m~I~VKtl~------g~~~~i~v~v~-----~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk------~L~D~~tL---   78 (98)
T 4a20_A           20 VHLTLKKIQ------APKFSIEHDFS-----PSDTILQIKQHLISEEKASHISEIKLLL-KGK------VLHDNLFL---   78 (98)
T ss_dssp             EEEEEEECS------SSCEEEEEEEC-----TTCBHHHHHHHHHHTTSCSCGGGEEEEE-TTE------EECTTCBG---
T ss_pred             EEEEEEcCC------CCEEEEEEecC-----CCChHHHHHHHHHHHhcCCChhhEEEEE-CCE------ECcCcCCH---
Confidence            678887654      33233556776     578999999998 443  2322333332 222      23333332   


Q ss_pred             CCccCcc-CCCCEEEEE
Q 034276           78 GQLDTTL-EEKDVVVFI   93 (99)
Q Consensus        78 ~g~~t~L-~dgD~V~i~   93 (99)
                        .++.+ ++|+.|.++
T Consensus        79 --~dy~I~~~g~ti~lm   93 (98)
T 4a20_A           79 --SDLKVTPANSTITVM   93 (98)
T ss_dssp             --GGSCCBTTBCEEEEE
T ss_pred             --HHcCcCCCCCEEEEE
Confidence              25678 899998876

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=90.29  E-value=0.7  Score=28.22  Aligned_cols=57  Identities=11%  Similarity=0.047  Sum_probs=35.5

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .+.++++     ...||.+|-+.|.+..  |..+.+|+. .|+.      + ++.   .|  .++.+++|+.|.++-
T Consensus        28 ~~~i~v~-----~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~------L-dd~---tL--~~~~i~~g~~i~lv~   86 (95)
T 1v86_A           28 KHDVKVP-----LDSTGSELKQKIHSITGLPPAMQKVMY-KGLV------P-EDK---TL--REIKVTSGAKIMVVG   86 (95)
T ss_dssp             EEEEEEC-----TTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBC------C-SSS---BH--HHHCCCTTEEEEECC
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCee------C-CcC---cH--HHCCCCCCCEEEEEe
Confidence            4578888     5789999999988766  333444443 2321      2 332   22  245678888887764

>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B

Probab=90.26  E-value=0.22  Score=32.66  Aligned_cols=26  Identities=12%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             EEEcCccceecCCccCccCCCCEEEE
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      .+|||+.++.-.+..++|++||+|.|
T Consensus        91 T~vNg~~i~l~~~~~~~L~~GD~I~l  116 (132)
T 3va4_A           91 TQIVKPPRVLPPGVSHRLRDQELILF  116 (132)
T ss_dssp             EEETTTTEEECTTCCEECCTTCEEEE
T ss_pred             eEECCEEcccCCCCEEECCCCCEEEE
Confidence            78899997666677789999999987

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=90.20  E-value=0.54  Score=30.09  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-..           ..+-++.+|+.+..-+- .+.-+++||.|.++...-|
T Consensus        38 ~i~fkVk-----~~t~l~kL~~ay~ek~gi~~-----------~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G  101 (110)
T 2k8h_A           38 EMFFRIK-----SRTALKKLIDTYCKKQGISR-----------NSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG  101 (110)
T ss_dssp             CEEEEEC-----TTSSHHHHHHHHHHHHTCCS-----------SSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence            3567787     57899999999998653211           12334445655543211 1236899999999998888


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus       102 g  102 (110)
T 2k8h_A          102 G  102 (110)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=89.82  E-value=0.49  Score=28.58  Aligned_cols=69  Identities=16%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc--Ccccccccc--cCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFM--KGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~--~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|++.       |  +.+.+ +++     ...||.+|-+.+.+..  |..+.+|+.  -.|.      ++-++..+ 
T Consensus         8 m~i~Vk~~-------g--~~~~i~~v~-----~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk------~L~D~~~L-   66 (90)
T 1v5t_A            8 LPIIVKWG-------G--QEYSVTTLS-----EDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKL-   66 (90)
T ss_dssp             CCEEEEET-------T--EEEEECSCC-----SSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBH-
T ss_pred             EEEEEEEC-------C--EEEEEEEeC-----CCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc------CcCCCCCH-
Confidence            67888852       2  23567 777     5789999999998766  333434441  1222      12222222 


Q ss_pred             ecCCccCccCCCCEEEEEe
Q 034276           76 LSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p   94 (99)
                          .++.+++|+.|.++-
T Consensus        67 ----~~~~i~~g~~l~l~~   81 (90)
T 1v5t_A           67 ----GALKLKPNTKIMMMG   81 (90)
T ss_dssp             ----HHHTCCTTEEEEEEC
T ss_pred             ----HHcCCCCCCEEEEEe
Confidence                235678999888874

>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*

Probab=89.28  E-value=0.2  Score=32.75  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=19.5

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEE
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      -++|||+.|.    ..++|++||.|.|
T Consensus        91 gt~VNG~~V~----~~~~L~~GD~I~l  113 (124)
T 3fm8_A           91 RTFVNGSSVS----SPIQLHHGDRILW  113 (124)
T ss_dssp             CEEETTEECC----SCEEECTTCEEEE
T ss_pred             CEEECCEEcC----CcEECCCCCEEEE
Confidence            3899999985    3589999999987

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=89.26  E-value=0.32  Score=29.22  Aligned_cols=60  Identities=5%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcc--cccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKE--RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~--~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      ++++     ..+|+.+|.+.+.+..+..  ...++.....-.+ + ....+..+     .+..|+.||.|.+.|
T Consensus        18 i~v~-----~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~-l-~~~~~~~l-----~~lgl~hGd~l~l~~   79 (80)
T 2pjh_A           18 ITAT-----KRETAATFLKKVAKEFGFQNNGFSVYINRNKTGE-I-TASSSKSL-----HLLKIKHGDLLFLFP   79 (80)
T ss_dssp             CCCC-----SSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGG-S-SSCCCCTT-----TTTCCCTTCCEEC--
T ss_pred             EEcC-----CcChHHHHHHHHHHHcCCCCCcceEEecCCCCCc-c-cCCCCCCH-----HHcCCCCCCEEEEec
Confidence            6666     5789999999999988643  2234332211011 1 00022222     134678999998877

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=88.52  E-value=0.92  Score=26.77  Aligned_cols=34  Identities=6%  Similarity=0.148  Sum_probs=24.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL   47 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~   47 (99)
                      |+|+|+...      |+  .+.++++     ...||.+|=+.+++..
T Consensus        18 m~i~Vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~   51 (88)
T 4eew_A           18 LEVLVKTLD------SQ--TRTFIVG-----AQMNVKEFKEHIAASV   51 (88)
T ss_dssp             EEEEEEETT------SC--EEEEEEE-----TTCBHHHHHHHHHHHH
T ss_pred             EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHh
Confidence            567777642      32  3467777     5789999999998765

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.51  E-value=1  Score=27.24  Aligned_cols=70  Identities=7%  Similarity=0.103  Sum_probs=38.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc---Ccccccc-cccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL---IKERPEM-FMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~---~~~~~~l-~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|+-..      |++....+ +++     +..||.+|-+.+.+..   |..+.+| |...|.      +|-++   .
T Consensus        11 M~I~Vk~~~------g~~~~~~l~~v~-----~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk------~L~D~---~   70 (88)
T 2dzj_A           11 YEVEILDAK------TREKLCFLDKVE-----PHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK------SLKDE---D   70 (88)
T ss_dssp             EEEEEEESS------SCCCCEEEEEEC-----SSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC------CCCTT---C
T ss_pred             EEEEEECCC------CCEEeeEEeEcC-----CCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc------CcCCC---C
Confidence            567776432      32221246 787     5789999999998843   3334444 333343      22122   2


Q ss_pred             ecCCccCccCCCCEEEE
Q 034276           76 LSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i   92 (99)
                      .|.  ++.+++|+.|.|
T Consensus        71 tL~--~y~i~~~stl~~   85 (88)
T 2dzj_A           71 VLQ--KLPVGTTATLYF   85 (88)
T ss_dssp             BTT--TSSCCSEEEEEE
T ss_pred             CHH--HcCCCCCCEEEE
Confidence            232  467777776643

>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A

Probab=87.99  E-value=0.31  Score=32.72  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=19.0

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEE
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      -++|||+.|.    ..+.|++||+|.|
T Consensus       111 gt~VNG~~i~----~~~~L~~GD~I~~  133 (154)
T 4ejq_A          111 DTYVNGKKVT----EPSILRSGNRIIM  133 (154)
T ss_dssp             CEEETTEECC----SCEECCTTCEEEE
T ss_pred             ceEECCEEcC----CceECCCCCEEEE
Confidence            3889999883    2578999999987

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=87.90  E-value=1.3  Score=29.52  Aligned_cols=63  Identities=10%  Similarity=0.202  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.++++     ...||.+|=+.+.++.  |....+|+.. |+      .|-|+   ..|  .++.+++|+.|.++-.+-
T Consensus       108 ~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~D~---~tL--~~y~i~~g~tl~l~~rlr  170 (172)
T 3u30_A          108 TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDG---RTL--SDYNIQKESTLHLVLRLR  170 (172)
T ss_dssp             EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEET-TE------ECCTT---SBS--GGGTCCTTCEEEECC---
T ss_pred             ceeEEec-----CCCCHHHHHHHHHHHhCCCceeEEEEEC-Cc------cCCCC---CcH--HHhCCCCCCEEEEEEecC
Confidence            4577787     5789999999998875  3333333322 22      12222   223  356899999999999888


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus       171 gG  172 (172)
T 3u30_A          171 GG  172 (172)
T ss_dssp             --
T ss_pred             CC
Confidence            87

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=87.57  E-value=1.1  Score=27.64  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=36.3

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceec-CCccCccCCCCEEEEE
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELS-GQLDTTLEEKDVVVFI   93 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l-~g~~t~L~dgD~V~i~   93 (99)
                      ..+.++     ...||.+|+.+.|.+-.-...          ..|-.+..|.+++.- .=.++.++|||.|..+
T Consensus        22 l~f~I~-----~~t~v~kLi~ayc~~~~I~~~----------~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           22 LRLSIP-----VDFTVKDLIKRYCTEVKISFH----------ERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             EEEEEE-----TTSBHHHHHHHHHHHHTCCCC----------TTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred             eEEEec-----CCCCHHHHHHHHHHHcCCCcC----------ceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence            568888     679999999999986643222          022233333333222 1246789999999764

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=87.29  E-value=1.1  Score=28.16  Aligned_cols=63  Identities=3%  Similarity=-0.096  Sum_probs=41.1

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~   97 (99)
                      .+.++++     ...||.+|=+.+.+...  ..+.+|+. .|.      +|-+++.+     .++.+++|+.|.++-..-
T Consensus        47 ~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~tL-----~~y~i~~g~~i~lv~rl~  109 (115)
T 1we7_A           47 GLVFTLP-----LTDQVSVIKVKIHEATGMPAGKQKLQY-EGI------FIKDSNSL-----AYYNMASGAVIHLALKER  109 (115)
T ss_dssp             EEEEEEC-----SCSBTHHHHHHHHHHSSCCTTTEEEEE-TTE------EECTTSBH-----HHHTCCSSCEEEEEECCC
T ss_pred             EEEEEEC-----CCCCHHHHHHHHHHHHCCChHHEEEEE-CCE------ECCCCCCH-----HHCCCCCCCEEEEEEEcC
Confidence            4578888     57899999999988662  22333432 222      23233222     245788999999998888


Q ss_pred             CC
Q 034276           98 GG   99 (99)
Q Consensus        98 GG   99 (99)
                      ||
T Consensus       110 GG  111 (115)
T 1we7_A          110 SG  111 (115)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2

Probab=87.04  E-value=0.36  Score=30.76  Aligned_cols=24  Identities=17%  Similarity=0.007  Sum_probs=19.3

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEEE
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      -++|||+.+.    ..++|++||+|.|=
T Consensus        81 gt~vNg~~i~----~~~~L~~GD~I~iG  104 (120)
T 1wln_A           81 ETYVDGQRIS----ETTMLQSGMRLQFG  104 (120)
T ss_dssp             CEEETSCBCS----SCEEECTTCEEEET
T ss_pred             CEEECCEEcC----CCEECCCCCEEEEC
Confidence            3789999885    34799999999874

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=86.82  E-value=2.6  Score=32.20  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+||...      |  +.+.++++     ...||.+|-+.+.+.     +|..+-+|+. .|+      +|-+++.+ 
T Consensus         8 M~I~VKtl~------G--k~~~leV~-----~~~TV~~LK~~I~~~~~~~gip~~~QrLiy-~GK------~L~D~~tL-   66 (368)
T 1oqy_A            8 VTITLKTLQ------Q--QTFKIRME-----PDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVPI-   66 (368)
T ss_dssp             CCEEEEETT------T--EEEEECCC-----TTCBHHHHHHHHHHHTCSSSCCSTEEEEES-SSS------EECSSSBT-
T ss_pred             EEEEEEeCC------C--CEEEEEeC-----CCChHHHHHHHHHHHhCcCCCChhheEEEE-CCe------ecCCcCCH-
Confidence            788888763      3  23567777     578999999999984     3333334433 232      33333322 


Q ss_pred             ecCCccCccCCCCEE-EEE
Q 034276           76 LSGQLDTTLEEKDVV-VFI   93 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V-~i~   93 (99)
                          .++.+++|+.| .++
T Consensus        67 ----~dygI~~gstIv~lv   81 (368)
T 1oqy_A           67 ----RDYRIDEKNFVVVMV   81 (368)
T ss_dssp             ----TTTCCCTTSCEEEEE
T ss_pred             ----HHcCCCCCCEEEEEE
Confidence                25678888877 444

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}

Probab=86.65  E-value=0.57  Score=28.02  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      ++|+.|+...+..   .+.          +.-+...|||+-|+    +.++|++++.|.|+.
T Consensus        28 ~~T~~dia~~i~~---~l~----------~~~vaakvNg~l~d----L~~~l~~d~~ve~vt   72 (88)
T 1wwt_A           28 KTTPYQIACGISQ---GLA----------DNTVIAKVNNVVWD----LDRPLEEDCTLELLK   72 (88)
T ss_dssp             TCCHHHHHHHSST---TTG----------GGCCCEEESSSEEC----SSSCCCSSEEEEECS
T ss_pred             CCCHHHHHHHhhh---ccc----------cceEEEEECCEEEC----CCcCcCCCCEEEEEe
Confidence            7898888776532   222          22345678998765    689999999999875

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=86.43  E-value=4  Score=24.96  Aligned_cols=71  Identities=8%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..       |+  ...++++     ...||.+|-+.+++...  ...-+|+. .|+      +|-+++.   | 
T Consensus        26 m~I~Vk~~-------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L-   80 (101)
T 2klc_A           26 MKVTVKTP-------KE--KEEFAVP-----ENSSVQQFKEEISKRFKSHTDQLVLIF-AGK------ILKDQDT---L-   80 (101)
T ss_dssp             EEEEEECS-------SC--EEEEEEC-----SCCCHHHHHHHHHHHHTCCGGGEEEEE-TTE------EECTTCC---T-
T ss_pred             EEEEEEeC-------Cc--EEEEEEC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCc---H-
Confidence            56777764       32  2467787     57899999999987652  22223332 222      2223222   2 


Q ss_pred             CccCccCCCCEEEEEecCC
Q 034276           79 QLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~   97 (99)
                       .++.+++|+.|.++-...
T Consensus        81 -~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           81 -SQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             -GGGTCCTTCEEEEEECCS
T ss_pred             -HHcCCCCCCEEEEEEcCC
Confidence             246788999998876543

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=85.62  E-value=3.9  Score=31.86  Aligned_cols=64  Identities=19%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCcc------ceec---------CCccCcc
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCD------WELS---------GQLDTTL   84 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~d------i~~l---------~g~~t~L   84 (99)
                      ...|.+|     .++++-++++...+. |.+....   ......+++--|||..      |.++         +-.++.+
T Consensus       331 ~~~Vtv~-----~gssll~vLk~A~e~-~~F~F~~---~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~~Gv~~y~~  401 (414)
T 2bb6_A          331 RHSVSVP-----AGSSLEDILKNAQEH-GRFRFRT---QASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQQGIADYRP  401 (414)
T ss_dssp             EEEEEEE-----TTCCHHHHHHHHHHS-SSCCEEE---ECCTTSCEEEEETTEECCTTEEEEEEETTTEECSSCTTTCCC
T ss_pred             ceEEEec-----CCCCHHHHHHHHHhc-cCCceEe---eecCCCceEEEECCCccCCCceEEEEECCCCcccccccceec
Confidence            4578899     799999999999987 6553221   1122233334444322      3333         3345688


Q ss_pred             CCCCEEEE
Q 034276           85 EEKDVVVF   92 (99)
Q Consensus        85 ~dgD~V~i   92 (99)
                      ++||.|.|
T Consensus       402 ~~ge~I~f  409 (414)
T 2bb6_A          402 KDGETIEL  409 (414)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence            99999987

>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}

Probab=85.01  E-value=3.2  Score=26.21  Aligned_cols=60  Identities=10%  Similarity=0.019  Sum_probs=39.0

Q ss_pred             CcchHHHHHHHHHHhcCcccc---ccc------ccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           32 EKLIMKDLLSWVGTNLIKERP---EMF------MKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~---~l~------~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      +++|+.++|+..-. +.....   ...      ..+.+=|++-...+||+.... +-.+++|++||.|.|.
T Consensus        28 ~g~tL~dvLk~~~~-ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~-Ga~~~~v~dGD~i~~~   96 (101)
T 3u7z_A           28 DAKYLGEVLESENL-VDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNT-SADQTPVSDGDAFELT   96 (101)
T ss_dssp             CCSBHHHHHHHTTC-EEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCS-CGGGCBCCTTCEEEEE
T ss_pred             CccHHHHHHHHcCc-cccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhh-chhheEecCCCEEEEE
Confidence            78999999976642 211000   011      112234778888999988754 5667899999999885

>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}

Probab=84.81  E-value=0.53  Score=32.60  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=20.3

Q ss_pred             ceEEEEcCccceecCCccCccCCCCEEEE
Q 034276           64 GVLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        64 ~v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      +-.++|||+.|.    ..|.|..||.|.|
T Consensus       139 ~a~t~VNG~~I~----~~~~L~~GDrI~l  163 (184)
T 4egx_A          139 GADTYVNGKKVT----EPSILRSGNRIIM  163 (184)
T ss_dssp             TCCEEETTEECC----SCEECCTTCEEEE
T ss_pred             CCeEEEcCEEcc----ccEEcCCCCEEEE
Confidence            334899999984    3689999999976

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=84.28  E-value=1.7  Score=27.05  Aligned_cols=36  Identities=6%  Similarity=0.066  Sum_probs=24.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL   47 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~   47 (99)
                      |+|+|+...+      +...+.++++     ...||.+|=+.|.++.
T Consensus        24 m~I~VK~~~g------~~~~i~l~v~-----~~~TV~~LK~~I~~~~   59 (99)
T 2kdb_A           24 VTLIIKAPNQ------KYSDQTISCF-----LNWTVGKLKTHLSNVY   59 (99)
T ss_dssp             EEEEEECTTS------SSCCEEEEEC-----TTSBHHHHHHHHHHHS
T ss_pred             EEEEEEcCCC------CEEEEEEEcC-----CCCHHHHHHHHHHHHh
Confidence            5677775432      2123467777     5789999999999865

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=83.63  E-value=2.5  Score=26.35  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=40.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+..      .|+  ++.+++.     +..||.+|=+.++++..  ...-+|.. .|+      +|-   |...| 
T Consensus        22 IqI~Vk~~------~Gk--k~~v~v~-----p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk------~Lk---D~~TL-   77 (93)
T 3plu_A           22 IEVVVNDR------LGK--KVRVKCL-----GEDSVGDFKKVLSLQIGTQPNKIVLQK-GGS------VLK---DHISL-   77 (93)
T ss_dssp             EEEEEECT------TSC--EEEEEEE-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECC---TTSBT-
T ss_pred             EEEEEECC------CCC--EEEEEEC-----CcCHHHHHHHHHHHHhCCCHHHEEEEe-CCE------Ecc---CcCCH-
Confidence            35666553      554  3467776     57899999999987663  22223321 222      222   22333 


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++.+++|+.+.++
T Consensus        78 -~dY~I~dgstLhL~   91 (93)
T 3plu_A           78 -EDYEVHDQTNLELY   91 (93)
T ss_dssp             -GGGTCCTTCEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             47899999998775

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=83.45  E-value=1.8  Score=25.67  Aligned_cols=34  Identities=9%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEE-eCCCCCCCcchHHHHHHHHHHhcC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVD-VVPPKGSEKLIMKDLLSWVGTNLI   48 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~ve-v~~~~~~~~~tv~dll~~L~~~~~   48 (99)
                      |+|+|+...+       +.  .++ ++     ...||.+|-+.++++..
T Consensus         1 m~i~vr~~~G-------~~--~v~~l~-----~~~Tv~~Lk~~I~~~~g   35 (86)
T 2kzr_A            1 WRVRCKAKGG-------TH--LLQGLS-----SRTRLRELQGQIAAITG   35 (86)
T ss_dssp             CCEEEEETTE-------EE--EECSCC-----TTCBHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCC-------CE--EeeecC-----CCCCHHHHHHHHHHHhC
Confidence            8899988775       12  255 66     57899999999998753

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=83.27  E-value=5.1  Score=23.51  Aligned_cols=58  Identities=12%  Similarity=0.079  Sum_probs=37.3

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~   93 (99)
                      ++.+.+.     ...+++.|.++.+++..-.           ...+-++-+|+.+..-+- .+.-+++||.|.++
T Consensus        20 ~i~~~i~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A           20 MLEISLS-----PDSPLKVLMSHYEEAMGLS-----------GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEEC-----TTSCHHHHHHHHHHHHTCT-----------TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3567787     5789999999999865321           113445557766543211 12268899999876

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=83.07  E-value=5.7  Score=23.92  Aligned_cols=66  Identities=8%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      ..+..+|     ...||.+|=..|.+.+  |....+|+..++. .+...+.+++.+ ..|  ..+.+.+||.|.+.-
T Consensus        24 ~~e~~l~-----~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~-~~L--~~y~i~~G~~I~V~d   91 (97)
T 1wjn_A           24 ILEKQLP-----DSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDL-QPL--QFYSVENGDCLLVRW   91 (97)
T ss_dssp             CEEEEEE-----TTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSS-SBS--GGGTCCTTCEEEEEC
T ss_pred             EEEEECC-----CCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCc-ccH--hhcCCCCCCEEEEEe
Confidence            3567787     5789999999998877  3444455543322 222333333222 233  357899999998753

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=83.05  E-value=7.8  Score=27.00  Aligned_cols=61  Identities=11%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhc-CcccccccccCCccccce----EEEEcCccceecCCccCccCC--CCEEEEE
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGV----LVLVNDCDWELSGQLDTTLEE--KDVVVFI   93 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~-~~~~~~l~~~~g~l~~~v----~ilvNg~di~~l~g~~t~L~d--gD~V~i~   93 (99)
                      .+++++     ++.||-|+|..+..+. |.+.   |..  ..+.++    .+.|||+....-   .|++.+  |+.++|-
T Consensus        26 ~~v~~~-----~~~tlL~~l~~~~~~~~~~l~---~~~--~c~~g~Cg~C~v~i~G~~~~aC---~~~~~~~~g~~~~ie   92 (241)
T 2bs2_B           26 YKIEEA-----PSMTIFIVLNMIRETYDPDLN---FDF--VCRAGICGSCGMMINGRPSLAC---RTLTKDFEDGVITLL   92 (241)
T ss_dssp             EEEECC-----TTCBHHHHHHHHHHHTCTTCC---CCC--SSSSSSSCTTEEEETTEEEEGG---GCBGGGCTTSEEEEE
T ss_pred             EEEeCC-----CCChHHHHHHHhchhcCCCCc---cCC--CCCCCCCCCCEeEECCCeecch---hCcHhHcCCCeEEEe
Confidence            456665     6899999999987653 3322   111  123343    577899876433   356666  5667765


Q ss_pred             e
Q 034276           94 S   94 (99)
Q Consensus        94 p   94 (99)
                      |
T Consensus        93 ~   93 (241)
T 2bs2_B           93 P   93 (241)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=82.76  E-value=2.5  Score=26.16  Aligned_cols=49  Identities=8%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             eEEEEEcc--hHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCc
Q 034276            2 QLTLEFGG--GLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDC   72 (99)
Q Consensus         2 ~v~V~f~a--~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~   72 (99)
                      ||+|+|-+  .+-. ..++   .+-+|     ...|+.+++..|+++..-             ..+-++||..
T Consensus         8 Kv~vrfk~~g~~P~-l~k~---KflV~-----~~~t~~~~v~~lRkrL~l-------------~alFlyVNn~   58 (91)
T 3w1s_C            8 KIQIKFQPIGSIGQ-LKPS---VCKIS-----MSQSFAMVILFLKRRLKM-------------DHVYCYINNS   58 (91)
T ss_dssp             EEEEEEEECCC-----------EEEEE-----TTSBHHHHHHHHHHHHTC-------------SCCEEEETTT
T ss_pred             eEEEEEEecCCCCc-cccc---EEEcC-----CCCCHHHHHHHHHHhhCC-------------ceEEEEECCc
Confidence            68888876  3333 3322   36688     679999999999986531             2566888874

>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}

Probab=81.40  E-value=0.92  Score=29.51  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=18.6

Q ss_pred             EEEcCccceecCCccCccCCCCEEEE
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      .+|||+.|.-  +..++|++||+|.|
T Consensus        96 T~vNg~ri~~--~~~~~L~~GD~I~~  119 (130)
T 4h87_A           96 TFLNKTRIPP--RTYCRVHVGHVVRF  119 (130)
T ss_dssp             EEETTEECCT--TCCEECCTTCEEEE
T ss_pred             eEECCEECCC--CceeECCCCCEEEE
Confidence            6789988753  34468999999987

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=81.13  E-value=1.5  Score=27.65  Aligned_cols=68  Identities=6%  Similarity=-0.068  Sum_probs=39.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+-..      |+  .+.++++     +..||.+|-+.++++..  ..+-+|.. .|+      +|-|++   .| 
T Consensus        29 m~I~VKtl~------Gk--~i~lev~-----p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~Gk------~L~D~~---TL-   84 (100)
T 1uh6_A           29 IEVVCNDRL------GK--KVRVKCN-----TDDTIGDLKKLIAAQTGTRWNKIVLKK-WYT------IFKDHV---SL-   84 (100)
T ss_dssp             EEEEEECSS------SS--CEEEEEE-----TTSBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCSSC---BH-
T ss_pred             EEEEEECCC------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCCC---CH-
Confidence            567776543      43  2457777     57899999999988753  22323322 222      232222   22 


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++.+++|+.|.+.
T Consensus        85 -~dygI~~gstlhL~   98 (100)
T 1uh6_A           85 -GDYEIHDGMNLELY   98 (100)
T ss_dssp             -HHHTCCTTEEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             24567888887654

>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A

Probab=81.02  E-value=0.65  Score=28.45  Aligned_cols=21  Identities=24%  Similarity=0.367  Sum_probs=17.4

Q ss_pred             EEEcCccceecCCccCccCCCCEEEE
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      .+|||+.+.     .++|++||+|.|
T Consensus        67 t~vng~~i~-----~~~L~~gd~i~i   87 (100)
T 3po8_A           67 TTVNNAPVQ-----EWQLADGDVIRL   87 (100)
T ss_dssp             CEETTEECS-----EEECCTTCEEEE
T ss_pred             EEECCEECc-----eEECCCCCEEEE
Confidence            677998774     579999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1xo3a_	101	d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus	8e-29
d1v8ca1	87	d.15.3.1 (A:1-87) MoaD-related protein, N-terminal	4e-05

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.7 bits (243), Expect = 8e-29
 Identities = 55/99 (55%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 1   MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDS 60
           + + +EFGGG ELL D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDS
Sbjct: 5   LCVKVEFGGGAELLFDGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62

Query: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
           VRPG+LVL+ND DWEL G+LD  L+++D ++FISTLHGG
Sbjct: 63  VRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 101

>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: MoaD-related protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.8 bits (85), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 16/47 (34%)

Query: 53 EMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99
          E   +G+ +   V V +   D      L T L     +     + GG
Sbjct: 41 EELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAGG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	100.0
d1v8ca1	87	MoaD-related protein, N-terminal domain {Thermus t	99.94
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	99.94
d1fm0d_	81	Molybdopterin synthase subunit MoaD {Escherichia c	99.83
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	98.79
d1tygb_	65	Thiamin biosynthesis sulfur carrier protein ThiS {	98.05
d1rwsa_	68	Hypothetical protein PF1061 {Archaeon Pyrococcus f	97.95
d2cu3a1	63	Uncharacterised protein TTHA0675 {Thermus thermoph	97.89
d2hj1a1	77	Hypothetical protein HI0395 {Haemophilus influenza	97.13
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1wxqa2	76	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.13
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	95.44
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	95.24
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	95.21
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	95.2
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	94.98
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	94.94
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	94.62
d1ryja_	70	Hypothetical protein MTH1743 {Archaeon Methanobact	94.56
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	94.53
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	94.43
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	94.24
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	94.21
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	94.21
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	93.92
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	93.86
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	93.59
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	93.38
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	93.15
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	92.82
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	92.59
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.56
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	91.86
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	91.51
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	91.44
d2g1la1	102	Kinesin-like protein kif1c {Human (Homo sapiens) [	90.93
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	90.89
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	90.3
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	90.23
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	89.07
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	88.71
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	86.93
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	86.89
d1nyra2	59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	86.5
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	86.16
d1c06a_	159	Ribosomal protein S4 {Bacillus stearothermophilus	86.0
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	84.3
d1gxca_	116	Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}	84.14
d2exda1	72	Hypothetical protein PH0471 {Pyrococcus horikoshii	82.84
d1lgpa_	113	Cell cycle checkpoint protein Chfr {Human (Homo sa	82.71
d1g6ga_	127	Phosphotyrosine binding domain of Rad53 {Baker's y	82.4
d2gy9d1	204	Ribosomal protein S4 {Escherichia coli [TaxId: 562	82.28
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	82.25
d2uubd1	208	Ribosomal protein S4 {Thermus thermophilus [TaxId:	80.75
d2ff4a3	99	Probable regulatory protein EmbR, C-terminal domai	80.57

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=194.45  Aligned_cols=97  Identities=56%  Similarity=1.020  Sum_probs=91.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |+|+|+|+|+||.+|+++++++++++.  .+++.||+|||++|+++||..++++|+++|++|++|+|+|||+||++++|+
T Consensus         5 m~V~V~F~g~L~~lf~~~r~~~v~l~~--~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~~l~gl   82 (101)
T d1xo3a_           5 LCVKVEFGGGAELLFDGVKKHQVALPG--QEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL   82 (101)
T ss_dssp             CEEEEEECSSGGGGGTTCCCEEEECCS--SSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHHHHTTT
T ss_pred             eEEEEEEechHHHHhCCcceEEEEcCC--CCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCcceeccCCC
Confidence            899999999999999998888888873  225789999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCEEEEEecCCCC
Q 034276           81 DTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~GG   99 (99)
                      +|+|++||+|+||||||||
T Consensus        83 ~t~l~dgDeV~~~p~v~GG  101 (101)
T d1xo3a_          83 DYQLQDQDSILFISTLHGG  101 (101)
T ss_dssp             SCCCCTTCEEEEEETTCCC
T ss_pred             ccCcCCCCEEEEeCCCCCC
Confidence            9999999999999999999

>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: MoaD-related protein, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.5e-27  Score=149.45  Aligned_cols=86  Identities=14%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             EEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCc
Q 034276            4 TLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTT   83 (99)
Q Consensus         4 ~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~   83 (99)
                      ||+|||.||+++|+.   +++++      ++||+||++.|+++||+++..+++++ .++++|+|+|||++|+++++++|+
T Consensus         2 kV~~fa~lr~~~G~~---e~~v~------~~Tv~~ll~~L~~~~p~l~~~l~~~~-~~~~~v~i~vng~~i~~~~~~~~~   71 (87)
T d1v8ca1           2 KVNLYATFRDLTGKS---QLELP------GATVGEVLENLVRAYPALKEELFEGE-GLAERVSVFLEGRDVRYLQGLSTP   71 (87)
T ss_dssp             EEEECTHHHHHHTCS---EEECC------CSBHHHHHHHHHHHCGGGHHHHEETT-EECTTCEEEETTEEGGGTTGGGCB
T ss_pred             EEEEeHHHHHHhCCc---EEEEc------CCCHHHHHHHHHHHCHHHHHHhcccc-cccceEEEEEcCeeeecccCCccc
Confidence            799999999999974   36675      57999999999999999998888755 589999999999999999999999


Q ss_pred             cCCCCEEEEEecCCCC
Q 034276           84 LEEKDVVVFISTLHGG   99 (99)
Q Consensus        84 L~dgD~V~i~p~v~GG   99 (99)
                      |++||+|+||||+|||
T Consensus        72 l~~gdeV~i~PpvsGG   87 (87)
T d1v8ca1          72 LSPGATLDLFPPVAGG   87 (87)
T ss_dssp             CCTTCEEEEECSCCSE
T ss_pred             CCCCCEEEEECCCCCC
Confidence            9999999999999998

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=2.1e-26  Score=143.79  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL   80 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~   80 (99)
                      |||+|+|||.+|+++|+. +.++++|     +++||+||++.|+++||.+++.+|.+.+.+++++.++||++.++    .
T Consensus         2 mkI~v~~Fa~lre~~G~~-~~~~~~~-----~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~----~   71 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVD-EEEIELP-----EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----W   71 (88)
T ss_dssp             EEEEEEECTHHHHHHSSS-EEEEEEC-----TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----T
T ss_pred             eEEEEEEhHHHHHHhCCC-eEEEECC-----CCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcC----C
Confidence            999999999999999975 5688999     78999999999999999999999998889999999999999985    4


Q ss_pred             cCccCCCCEEEEEecCC
Q 034276           81 DTTLEEKDVVVFISTLH   97 (99)
Q Consensus        81 ~t~L~dgD~V~i~p~v~   97 (99)
                      +|+|++||+|+|||||+
T Consensus        72 d~~L~~gDevai~PPVs   88 (88)
T d1vjka_          72 DEELKDGDVVGVFPPVS   88 (88)
T ss_dssp             TCBCCTTCEEEEESCC-
T ss_pred             CcCcCCCCEEEEeCCCC
Confidence            89999999999999996

>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.8e-21  Score=118.21  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276            3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT   82 (99)
Q Consensus         3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t   82 (99)
                      |||+|||.+|+.+|++. .+++.      +++|+.+|++.|+++||.....+..      +.+.|.+|++.+    +.+|
T Consensus         2 i~V~~Fa~lre~~G~~~-~~~~~------~~~tv~~l~~~L~~~~~~~~~~l~~------~~~~vavn~~~~----~~~~   64 (81)
T d1fm0d_           2 IKVLFFAQVRELVGTDA-TEVAA------DFPTVEALRQHMAAQSDRWALALED------GKLLAAVNQTLV----SFDH   64 (81)
T ss_dssp             EEEEECHHHHHHHTCSE-EEECS------CCSBHHHHHHHHHTTCHHHHHHHCC------TTCEEEETTEEC----CTTC
T ss_pred             eEEEEeHHHHHHhCCCe-EEecC------CCCCHHHHHHHHHHhCchHHHHhcC------CcEEEecCceec----CCCC
Confidence            79999999999999753 44443      3679999999999999976554422      257799999754    4689


Q ss_pred             ccCCCCEEEEEecCCCC
Q 034276           83 TLEEKDVVVFISTLHGG   99 (99)
Q Consensus        83 ~L~dgD~V~i~p~v~GG   99 (99)
                      +|++||+|+|||||+||
T Consensus        65 ~l~~gdevAi~PPVsGG   81 (81)
T d1fm0d_          65 PLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             BCCTTCEEEEECCCCCC
T ss_pred             CcCCCCEEEEECCCCCC
Confidence            99999999999999999

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=9e-09  Score=60.17  Aligned_cols=57  Identities=12%  Similarity=0.226  Sum_probs=48.4

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++++     ++.|+.+||+.+.          +..     .++.|.+|++=|.--+..+|.|++||.|.||++++||
T Consensus         9 ~~~~-----~~~tl~~ll~~l~----------~~~-----~~vaV~vN~~ivpk~~~~~~~L~~gD~ieIv~~v~GG   65 (65)
T d1zud21           9 MQCA-----AGQTVHELLEQLD----------QRQ-----AGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG   65 (65)
T ss_dssp             ECCC-----TTCBHHHHHHHHT----------CCC-----TTEEEEETTEECCGGGTTTCBCCTTCEEEEEECCCCC
T ss_pred             EEcC-----CCCcHHHHHHHcC----------CCC-----CcEEEEECCEEcCHHHHhhccCCCCCEEEEEEEecCC
Confidence            5677     7899999999763          221     1688999999988888889999999999999999998

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=4.4e-06  Score=48.23  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=45.6

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCC
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~G   98 (99)
                      .+++.    +..|+.+||+.+.          +..     .++.|.+|++=+.--+..+|.|++||.|.|+.+++|
T Consensus         9 ~~~~~----~~~tl~~LL~~l~----------~~~-----~~vAVevN~~iv~k~~~~~~~L~~gD~IEIv~~vgG   65 (65)
T d1tygb_           9 VKWKK----DTGTIQDLLASYQ----------LEN-----KIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGG   65 (65)
T ss_dssp             ECCSS----SCCBHHHHHHHTT----------CTT-----SCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC
T ss_pred             EEcCC----CcccHHHHHHHcC----------CCC-----CcEEEEECCEEcCHHHcCcccCCCCCEEEEEEeecC
Confidence            55652    2469999998762          111     278899999988888889999999999999999977

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Hypothetical protein PF1061
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.95  E-value=4.8e-07  Score=53.02  Aligned_cols=54  Identities=26%  Similarity=0.377  Sum_probs=43.7

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      ++|++     +++||.|+|+.+-          |.     +.+.++-+||+=+.    .|.+++|||.+.++|-++||
T Consensus        15 eiE~~-----~g~~v~dvL~~~g----------l~-----~e~~vv~~nG~vv~----eDe~v~DGD~vei~PVVSGG   68 (68)
T d1rwsa_          15 EIEWR-----EGMKVRDILRAVG----------FN-----TESAIAKVNGKVVL----EDDEVKDGDFVEVIPVVSGG   68 (68)
T ss_dssp             CCCCC-----SSCCHHHHHHTTT----------CS-----SCSSCEEETTEEEC----SSSCCCSSCCCBCSCCCCCC
T ss_pred             EEEec-----CCcCHHHHHHHcC----------CC-----cceEEEEECCEEec----CCcccCCCCEEEEEEeecCC
Confidence            57777     8999999998552          32     33667889998764    47899999999999999998

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Uncharacterised protein TTHA0675
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=1.9e-05  Score=45.31  Aligned_cols=51  Identities=27%  Similarity=0.360  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCC
Q 034276           33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~G   98 (99)
                      +.|+.+||+.+.          +.     ..++.|.+|++=+.--+..+|.|++||.|.|+.+++|
T Consensus        13 ~~tl~~LL~~l~----------~~-----~~~vAV~vN~~ivpr~~~~~~~l~~gD~iEIv~~vgG   63 (63)
T d2cu3a1          13 GKTLKEVLEEMG----------VE-----LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQG   63 (63)
T ss_dssp             TCCHHHHHHHHT----------BC-----GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC
T ss_pred             CCCHHHHHHHcC----------CC-----CCcEEEEECCEEcCHHHcCcccCCCCCEEEEEEecCC
Confidence            579999998762          11     1378899999999888888999999999999999987

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: HI0395-like
domain: Hypothetical protein HI0395
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.0013  Score=38.96  Aligned_cols=72  Identities=10%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHH--HHHhcCcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSW--VGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~--L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|-|.-.=+     +..+.+++|     +|+|+.|++..  +.+.||+..   +.   ..+    +=|=|+-+.   
T Consensus         3 i~VeVvYA~p~~-----q~~~~l~v~-----~GtTv~~Ai~~Sgi~~~fpeid---l~---~~~----vGIfGk~v~---   59 (77)
T d2hj1a1           3 INIEIAYAFPER-----YYLKSFQVD-----EGITVQTAITQSGILSQFPEID---LS---TNK----IGIFSRPIK---   59 (77)
T ss_dssp             EEEEEEEEETTE-----EEEEEEEEE-----TTCBHHHHHHHHTHHHHCTTCC---TT---TSE----EEEEECSCC---
T ss_pred             eEEEEEEECCCe-----eEEEEEECC-----CCCcHHHHHHHcCcHhhCcccc---cc---ccc----EeEECcCcC---
Confidence            566776533322     334678899     89999998874  566677542   11   111    222355553   


Q ss_pred             CccCccCCCCEEEEEecC
Q 034276           79 QLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v   96 (99)
                       ++++|++||+|-|+=|+
T Consensus        60 -~~~~L~~gDRVEIYRPL   76 (77)
T d2hj1a1          60 -LTDVLKEGDRIEIYRPL   76 (77)
T ss_dssp             -TTCBCCTTCEEEECCCC
T ss_pred             -CCCcCCCCCEEEEeecC
Confidence             58999999999998765

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0032  Score=36.13  Aligned_cols=74  Identities=12%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |  +...++++     ...||.+|-+.++++.  |...-.|+. .|+      +|-|+..+    
T Consensus         1 MqI~Vk~l~------G--~~~~l~v~-----~~~tV~~lK~~I~~~~gi~~~~qrL~~-~Gk------~L~d~~tL----   56 (76)
T d1ogwa_           1 MQIFVKTLT------G--KTITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTL----   56 (76)
T ss_dssp             CEEEEEETT------S--CEEEEECC-----TTSBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSBG----
T ss_pred             CEEEEEcCC------C--CEEEEEEC-----CCCcHHHHHHhhhhhcCCChHHEEeEE-CCe------EcCCCCCH----
Confidence            889998653      3  24567887     5789999999998765  333334433 233      33344333    


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++|+.|.++...-||
T Consensus        57 -~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_          57 -SDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             -GGGTCCTTCEEEEEECTTCC
T ss_pred             -HHcCCCCCCEEEEEEecCCC
Confidence             35789999999999988887

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.13  E-value=0.0014  Score=38.61  Aligned_cols=52  Identities=19%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      +.+|     .|+|+.|+-.++-...   .+...        +-.+.+||+.+    +++++|++||.|.|+.
T Consensus        24 ~~Lp-----~GsTv~D~A~~IH~dl---g~~~~--------~A~~~~~g~~v----~l~~~L~dgDvVeIiT   75 (76)
T d1wxqa2          24 FLMK-----KGSTPRDLAFKVHTDL---GKGFL--------YAINARTKRRV----GEDYELQFNDIVKIVS   75 (76)
T ss_dssp             EEEE-----TTCCHHHHHHHHCHHH---HHTEE--------EEEETTTCSBC----CTTCCCCTTEEEEEEE
T ss_pred             EEeC-----CCCcHHHHHHHHhHHH---HhheE--------EEEECcCCEEC----CCCcCccCCCEEEEEE
Confidence            5688     7999999999884422   22211        11233477655    6799999999999985

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.44  E-value=0.021  Score=32.24  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+||..      -|+  ..+++++     +..||.++-+.++++.  |...-+++. .|+      +|-|++.+    
T Consensus         1 M~I~Vk~~------~G~--~~~l~V~-----~~~tV~~lK~~i~~~~gi~~~~qrLi~-~Gk------~L~d~~tL----   56 (73)
T d1bt0a_           1 MLIKVKTL------TGK--EIEIDIE-----PTDTIDRIKERVEEKEGIPPVQQRLIY-AGK------QLADDKTA----   56 (73)
T ss_dssp             CEEEEECT------TSC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSBT----
T ss_pred             CEEEEEeC------CCC--EEEEEEC-----CCCcHHHHHHHHHHHhCCChHHEEEEE-CCe------EcCCCCcH----
Confidence            88999754      343  4578887     5689999999998875  333334433 232      34444333    


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++.+++|+.|.++-
T Consensus        57 -~~y~I~~~sti~lvl   71 (73)
T d1bt0a_          57 -KDYNIEGGSVLHLVL   71 (73)
T ss_dssp             -GGGTCCTTCEEEEEE
T ss_pred             -HHcCCCCCCEEEEEe
Confidence             357899999998764

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.028  Score=31.98  Aligned_cols=69  Identities=16%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC-----cccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI-----KERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~-----~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|+...+        +..+++++     +..||.+|=+.+++..+     ..+-+|+. .|+      +|-|++.+ 
T Consensus         3 ~~i~vk~l~g--------~~~~l~v~-----~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~-~Gk------~L~D~~tL-   61 (77)
T d1oqya4           3 VTITLKTLQQ--------QTFKIRME-----PDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVPI-   61 (77)
T ss_dssp             CCEEEEETTT--------EEEEECCC-----TTCBHHHHHHHHHHHTCSSSCCSTEEEEES-SSS------EECSSSBT-
T ss_pred             EEEEEECCCC--------CEEEEEEC-----CCCcHHHHHHHHHHhcCCCCCChHHEEeEE-CCc------CccCCCcH-
Confidence            7888885443        34678887     57899999999887643     33334433 233      44444332 


Q ss_pred             ecCCccCccCCCCEEEEEe
Q 034276           76 LSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p   94 (99)
                          .++-+++|+.|.++-
T Consensus        62 ----~~y~I~~~s~i~~~v   76 (77)
T d1oqya4          62 ----RDYRIDEKNFVVVMV   76 (77)
T ss_dssp             ----TTTCCCTTSCEEEEE
T ss_pred             ----HHcCCCCCCEEEEEE
Confidence                357899999887763

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.034  Score=32.86  Aligned_cols=69  Identities=19%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc-----CcccccccccCCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL-----IKERPEMFMKGDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~-----~~~~~~l~~~~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|+..      -|+  ..++++.     ...||.+|=+.+.++.     |...-+|+. .|+      +|-|++.  
T Consensus         1 M~I~vk~~------~g~--~~~l~v~-----~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~-~Gk------~L~d~~t--   58 (95)
T d1uela_           1 MQVTLKTL------QQQ--TFKIDID-----PEETVKALKEKIESEKGKDAFPVAGQKLIY-AGK------ILNDDTA--   58 (95)
T ss_dssp             CEEEEEET------TCC--EEEEECC-----TTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-TTE------ECCTTSB--
T ss_pred             CEEEEEeC------CCC--EEEEEEC-----CCccHHHHHHHHHhhhcccCCCccceEEEE-CCe------EccCCCc--
Confidence            99999974      332  4578887     5789999999988753     222223332 233      3444433  


Q ss_pred             ecCCccCccCCCCEEEEEe
Q 034276           76 LSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p   94 (99)
                       |  .++-+++|+.|.++.
T Consensus        59 -L--~~y~I~~~s~i~lv~   74 (95)
T d1uela_          59 -L--KEYKIDEKNFVVVMV   74 (95)
T ss_dssp             -G--GGGTCCSSSEEEEEE
T ss_pred             -H--HHcCCCCCCEEEEEE
Confidence             2  257899999988764

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=95.20  E-value=0.048  Score=31.15  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=44.7

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++++++..-..           ..+.++-||+.+..-+ =.+.-+++||.|..+....|
T Consensus        15 ~~~f~v~-----~~~~~~~l~~~~~~~~~i~~-----------~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~G   78 (79)
T d1euvb_          15 EIFFKIK-----KTTPLRRLMEAFAKRQGKEM-----------DSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   78 (79)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHTTCCG-----------GGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBC
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHhCCCh-----------HhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccC
Confidence            4567787     57899999999998664222           1233445666654332 23458999999999999999


Q ss_pred             C
Q 034276           99 G   99 (99)
Q Consensus        99 G   99 (99)
                      |
T Consensus        79 G   79 (79)
T d1euvb_          79 G   79 (79)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.032  Score=32.54  Aligned_cols=74  Identities=9%  Similarity=0.058  Sum_probs=47.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+...      |  +...+++.     ...||.++-+.+.++.  |....+|+. .|+      +|-|++.   | 
T Consensus         8 mqI~Vk~~~------g--~~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk------~L~d~~t---L-   63 (87)
T d1wh3a_           8 IQVFVKNPD------G--GSYAYAIN-----PNSFILGLKQQIEDQQGLPKKQQQLEF-QGQ------VLQDWLG---L-   63 (87)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHHHHTCCCTTTEEEEE-TTE------ECCSSSB---H-
T ss_pred             EEEEEECCC------C--CEEEEEEC-----CcCcHHHHHHHHHHHHCcChHHeEEEe-ece------EcCCCCc---H-
Confidence            778887643      3  23567787     5689999999998876  333334433 222      3323322   2 


Q ss_pred             CccCccCCCCEEEEEecCCCC
Q 034276           79 QLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~GG   99 (99)
                       .++-+++|+.|.++....||
T Consensus        64 -~~y~I~~~stl~l~~r~~~g   83 (87)
T d1wh3a_          64 -GIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             -HHHTCCTTEEEEEEECSCCC
T ss_pred             -HHcCCCCCCEEEEEecCCCC
Confidence             25689999999998766554

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.03  Score=33.33  Aligned_cols=65  Identities=11%  Similarity=0.095  Sum_probs=43.1

Q ss_pred             CCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           16 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        16 g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      +++ .++++++     ...||.+|=+.|.+..  |..+.+|+. .|.+       .|+..+     .++.|++|+.|.++
T Consensus        25 ~~k-~~~i~v~-----~~~TV~~LK~~I~~~tgvp~~~q~Li~-~g~l-------~D~~tL-----~~~~I~~gs~i~lv   85 (95)
T d1v86a_          25 NKT-KHDVKVP-----LDSTGSELKQKIHSITGLPPAMQKVMY-KGLV-------PEDKTL-----REIKVTSGAKIMVV   85 (95)
T ss_dssp             TTE-EEEEEEC-----TTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBC-------CSSSBH-----HHHCCCTTEEEEEC
T ss_pred             CCE-EEEEEEC-----CCCcHHHHHHHHHHHhCCChhHEEEEe-cccc-------cCCCcH-----HHCCCCCCCEEEEE
Confidence            444 4688898     5789999999998876  444445543 2333       244332     35689999999998


Q ss_pred             ecCCCC
Q 034276           94 STLHGG   99 (99)
Q Consensus        94 p~v~GG   99 (99)
                      -+..+|
T Consensus        86 gs~~~g   91 (95)
T d1v86a_          86 GSTISG   91 (95)
T ss_dssp             CSSCCC
T ss_pred             ecCCCC
Confidence            655443

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.12  Score=31.50  Aligned_cols=65  Identities=15%  Similarity=0.076  Sum_probs=37.8

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhc-CcccccccccCCccccceEEEEcCccceecCCccCccCC-CCEEEEEe
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEE-KDVVVFIS   94 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~-~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~d-gD~V~i~p   94 (99)
                      .+++++     ++.||-|+|.++.++. |.+.-+ +.....+=..=.+.|||+....-   .|.+++ +|.+.|=|
T Consensus        26 y~v~~~-----~~~tvLd~L~~Ik~~~d~sLsfr-~sCr~giCGsCam~ING~~~LAC---~t~v~~~~~~i~ieP   92 (105)
T d1kf6b2          26 YEVPYD-----ATTSLLDALGYIKDNLAPDLSYR-WSCRMAICGSCGMMVNNVPKLAC---KTFLRDYTDGMKVEA   92 (105)
T ss_dssp             EEEEEC-----TTCBHHHHHHHHHHHTCTTCCCC-CCCSSSSSCCCEEEETTEEEEGG---GCBGGGCTTCEEEEC
T ss_pred             EEEecC-----CCCcHHHHHHHHHHhcCCcceEE-eccCCCCCCCCeEEECCcccccc---eeEeeccCCCeEEEE
Confidence            456665     7899999999998865 433211 11111222345699999986432   344432 34565544

>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Hypothetical protein MTH1743
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.56  E-value=0.17  Score=28.47  Aligned_cols=54  Identities=19%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG   99 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG   99 (99)
                      .++..     ++.+++|+|..+.-  |             ...|.+-.||+-+-    .+..+.+||++.++--+.||
T Consensus        17 ~~E~~-----~p~~IkDiL~~lEi--p-------------ieTvVvK~NG~~Vi----eeeei~dgDeieiI~vIYGG   70 (70)
T d1ryja_          17 ILESG-----APRRIKDVLGELEI--P-------------IETVVVKKNGQIVI----DEEEIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             EEEES-----SCCBHHHHHHHTTC--C-------------TTTEEEEETTEECC----TTSBCCTTCEEEEEECTTCC
T ss_pred             hhhcC-----CChhHHHHhccccc--c-------------ceEEEEecCCcEEe----chhhccCCCEEEEEEEEecC
Confidence            45665     57889999986631  1             12677888997763    46799999999999999998

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.046  Score=31.58  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=42.8

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|.+.+        + .++++++....+...||.+|-+.+.+..  |..+..|+.....|       -|+.  ..| 
T Consensus         2 i~i~V~~~~--------~-~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L-------~~d~--~tL-   62 (81)
T d1wxva1           2 LTVTVTHSN--------E-KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSL-------KEME--TPL-   62 (81)
T ss_dssp             EEEEEECSS--------S-EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEE-------CCSS--SBH-
T ss_pred             EEEEEEECC--------e-eEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEe-------CcCC--CCh-
Confidence            566665533        2 3677786422235789999999998876  33344444322111       1211  111 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++.+++|+.|.++=
T Consensus        63 -~~~gi~~g~~i~lv~   77 (81)
T d1wxva1          63 -SALGIQDGCRVMLIG   77 (81)
T ss_dssp             -HHHTCCSSEEEEEES
T ss_pred             -HHCCCCCCCEEEEEE
Confidence             345789999998863

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.23  Score=30.22  Aligned_cols=91  Identities=9%  Similarity=-0.050  Sum_probs=50.6

Q ss_pred             CeEEEEEcchHhhhcCCe-eEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC
Q 034276            1 MQLTLEFGGGLELLCDSV-KVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ   79 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~-~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g   79 (99)
                      |+||++.|-. ....+.+ .-.+++++.+ .....|+-++|.++.+.-|.+.-+- .....+=..-.+.|||+..-.-.-
T Consensus         1 Mkv~~~I~R~-dp~~~~~~~~~~y~v~~~-~~~~~~vl~~L~~i~e~D~sLsfr~-sCr~giCGsCam~ING~~~LAC~t   77 (106)
T d1nekb2           1 MRLEFSIYRY-NPDVDDAPRMQDYTLEAD-EGRDMMLLDALIQLKEKDPSLSFRR-SCREGVCGSDGLNMNGKNGLACIT   77 (106)
T ss_dssp             CCCEEEEEEC-CTTTCSSCEEEEEECCCC-SSSCCBHHHHHHHHHHHCTTCCCCC-CSSSSCSCTTEEEETTEEEETTSC
T ss_pred             CeEEEEEEEc-CCCCCCCCEEEEEEEeec-CCccHHHHHHHHHHhccCCCEEEEc-CCCCCCCCcceEEEcCccccchhe
Confidence            8888877643 1112222 2245666631 1124689999999887655543221 111233445569999998644321


Q ss_pred             ccCc-cCCCCEEEEEe
Q 034276           80 LDTT-LEEKDVVVFIS   94 (99)
Q Consensus        80 ~~t~-L~dgD~V~i~p   94 (99)
                      .-.. .++||+|.|-|
T Consensus        78 ~v~~~~~~~~~i~IeP   93 (106)
T d1nekb2          78 PISALNQPGKKIVIRP   93 (106)
T ss_dssp             BTTTTCCTTSCEEEEC
T ss_pred             ehhHhhCCCCeEEEEE
Confidence            1112 24689999887

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.065  Score=32.11  Aligned_cols=67  Identities=7%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..       +.  +++++|+     ...||.+|=+.++++..  ...-+|+. .|+      +|-|++.+    
T Consensus        33 i~V~Vk~~-------~~--~~~i~V~-----~~~tV~~LK~~I~~~~gi~~~~qrLi~-~Gk------~L~D~~tL----   87 (103)
T d1j8ca_          33 IKVTVKTP-------KE--KEEFAVP-----ENSSVQQFKEAISKRFKSQTDQLVLIF-AGK------ILKDQDTL----   87 (103)
T ss_dssp             EEEEEECS-------SC--EEEEEEC-----TTCCHHHHHHHHHHHHCSCSSSEEEEE-TTE------EESTTSCG----
T ss_pred             EEEEEECC-------Cc--cEEEEEC-----CCChHHHHHHHHHHHHCcCHHHeeeee-eee------cccCCCcH----
Confidence            56777652       32  2468888     67899999999998863  22333433 222      34444433    


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++-|++|+.|.++
T Consensus        88 -~~~~I~~g~~I~lv  101 (103)
T d1j8ca_          88 -IQHGIHDGLTVHLV  101 (103)
T ss_dssp             -GGTTCSSSEEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             25689999998775

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.11  Score=30.73  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|++..+        +...++++     ...||.+|=+.+.+..  |..+.+|+.. |+      +| ++.   .| 
T Consensus         8 ~~I~VK~~~~--------~~~~v~v~-----~~~tV~~lK~~i~~~~gvp~~~QkLi~~-Gk------~L-~d~---tL-   62 (96)
T d1wgga_           8 YSVTVKWGKE--------KFEGVELN-----TDEPPMVFKAQLFALTGVQPARQKVMVK-GG------TL-KDD---DW-   62 (96)
T ss_dssp             EEEEEEETTE--------EEEEEEEE-----SSSCHHHHHHHHHHHTCCCTTTSCCEET-TE------EC-CSS---CC-
T ss_pred             eEEEEEeCCC--------CEEEEEEC-----CCCcHHHHHHHhhhhcCccceeeEEeec-Cc------cc-CCC---cH-
Confidence            4677766432        33468888     5789999999998875  4444444432 33      12 222   23 


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++-+++|+.|.++
T Consensus        63 -~~~gi~~g~~i~lv   76 (96)
T d1wgga_          63 -GNIKMKNGMTVLMM   76 (96)
T ss_dssp             -CSCCCCSSCEEECC
T ss_pred             -HHCCCCCCCEEEEE
Confidence             35689999999987

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.079  Score=31.63  Aligned_cols=65  Identities=9%  Similarity=-0.041  Sum_probs=40.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCcc----cee
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCD----WEL   76 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~d----i~~   76 (99)
                      |+|+||+.-      |  ++..+++.     ...||.+|=+.+.+. +..+-+             ++.+|+-    ...
T Consensus         8 m~i~vK~l~------~--~~~~v~v~-----~~~TV~~lK~~i~~~-~~~~qr-------------Li~~Gk~L~dd~~t   60 (95)
T d1wiaa_           8 INVRLKFLN------D--TEELAVAR-----PEDTVGTLKSKYFPG-QESQMK-------------LIYQGRLLQDPART   60 (95)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHSSS-TTTTCE-------------EEETTEECCCSSCB
T ss_pred             EEEEEEcCC------C--CEEEEEEC-----CcCcHHHHHHHHhcC-CcceeE-------------EEECCEEcccCCCC
Confidence            788887754      3  34567887     678999998777543 222212             3333332    222


Q ss_pred             cCCccCccCCCCEEEEEe
Q 034276           77 SGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        77 l~g~~t~L~dgD~V~i~p   94 (99)
                      |  .++.|.+|+.|.++-
T Consensus        61 L--~~y~i~~g~~v~l~~   76 (95)
T d1wiaa_          61 L--SSLNITNNCVIHCHR   76 (95)
T ss_dssp             T--TTTTCCTTEEEEEEC
T ss_pred             H--HHcCCCCCCEEEEEE
Confidence            3  257899999998874

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.06  Score=30.36  Aligned_cols=68  Identities=9%  Similarity=0.078  Sum_probs=44.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+-.      .|+  +.++++.     +..||.+|-+.++++.  |...-+|+.. |+      +|-|+..+    
T Consensus         2 i~i~vk~~------~Gk--~~~v~V~-----~~~tV~~lK~~I~~~~~i~~~~q~Li~~-Gk------~L~d~~tL----   57 (73)
T d1m94a_           2 IEVVVNDR------LGK--KVRVKCL-----AEDSVGDFKKVLSLQIGTQPNKIVLQKG-GS------VLKDHISL----   57 (73)
T ss_dssp             EEEEEEET------TTE--EEEEEEC-----TTSBHHHHHHHHHHHHCCTTTSEEEESS-SC------EECTTSBH----
T ss_pred             eEEEEECC------CCC--EEEEEEC-----CcCcHHHHHHHHHHhhcccccEEEEEEE-eE------EecccCcH----
Confidence            36777665      353  4578888     5789999999998876  3333344332 33      34455443    


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++.+++|+.|.+|
T Consensus        58 -~~y~I~~gstl~L~   71 (73)
T d1m94a_          58 -EDYEVHDQTNLELY   71 (73)
T ss_dssp             -HHHTCCTTEEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             25789999999876

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.86  E-value=0.14  Score=30.32  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=41.4

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      .+++++|     ...||.+|=..+.+.+  |....+|+..+....+.-+.|-|+..  .|  .++-+++||+|.+-
T Consensus        24 ~~~~kv~-----~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~--tL--~~YgI~dg~~I~V~   90 (97)
T d1wjna_          24 ILEKQLP-----DSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQ--PL--QFYSVENGDCLLVR   90 (97)
T ss_dssp             CEEEEEE-----TTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSS--BS--GGGTCCTTCEEEEE
T ss_pred             eEEEEcC-----CCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCc--CH--hhccCCCCCEEEEE
Confidence            3577888     6789999998888776  44445565544344444333333322  22  25789999999874

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.14  Score=28.94  Aligned_cols=58  Identities=9%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhc--Ccccccc-cccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEM-FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l-~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      ...++++     +..||.++-+.+.++.  |....+| |...|.      +|-|+..+     .++.+++|+.|.++
T Consensus        12 ~~~v~V~-----~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk------~L~D~~tL-----~~y~i~~g~~i~lv   72 (76)
T d1z2ma1          12 EFQVSLS-----SSMSVSELKAQITQKIGVHAFQQRLAVHPSGV------ALQDRVPL-----ASQGLGPGSTVLLV   72 (76)
T ss_dssp             EEEEECC-----SSCCHHHHHHHHHHHHCCCGGGEEEEEETTCC------BCCSSSCS-----GGGTCCTTCEEEEE
T ss_pred             EEEEEEC-----CCCcHHHHHHHHHHHhccCCccEEEEEcCCCe------eccCCCcH-----HHcCCCCCCEEEEE
Confidence            4578888     6789999999998876  3333334 433343      23344333     36789999999876

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.11  Score=29.52  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|++..      |+  ...++++     ...||.++-+.+.++.  |....+|+.. |+      .|-|++-   | 
T Consensus         3 M~I~Vk~~~------g~--t~~l~v~-----~~~tV~~lK~~i~~~~gip~~~qrLi~~-Gk------~L~d~~t---L-   58 (78)
T d2zeqa1           3 MIVFVRFNS------SY--GFPVEVD-----SDTSILQLKEVVAKRQGVPADQLRVIFA-GK------ELPNHLT---V-   58 (78)
T ss_dssp             EEEEEESSS------SS--CEEEEEC-----TTCBHHHHHHHHHHHHTCCGGGEEEEET-TE------EECTTCB---G-
T ss_pred             eEEEEEcCC------CC--EEEEEEc-----ccccHHHHHHHHHHHHCcChhHeEEEEe-ee------EcCCCCC---H-
Confidence            677777653      32  3567887     5789999999997765  3333344432 33      3334433   2 


Q ss_pred             CccCccCCCCEEEEEecCC
Q 034276           79 QLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~   97 (99)
                       .++-+++|+.|.++-..-
T Consensus        59 -~~y~I~~~sti~lv~R~r   76 (78)
T d2zeqa1          59 -QNCDLEQQSIVHIVQRPR   76 (78)
T ss_dssp             -GGSSCCTTCEEEEEESSC
T ss_pred             -HHcCCCCCCEEEEEeccC
Confidence             357899999998876543

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.059  Score=29.73  Aligned_cols=50  Identities=12%  Similarity=-0.024  Sum_probs=38.0

Q ss_pred             EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .++|     .++|..|+...+..   .+.+          .-+...|||+-|+    ++++|++++.|.|+-
T Consensus        12 ~~~~-----~g~T~~diA~~I~~---~l~k----------~avaa~vng~l~d----L~~~l~~d~~veiiT   61 (62)
T d1tkea1          12 RHYD-----HAVSPMDVALDIGP---GLAK----------ACIAGRVNGELVD----ACDLIENDAQLSIIT   61 (62)
T ss_dssp             EECS-----SCBCHHHHHHHHCH---HHHH----------HCCEEEETTEEEE----TTCCBCSCEEEEEEC
T ss_pred             EEcC-----CCCCHHHHHHHHCc---hhhh----------eEEEEEECCEEeC----CCcCcCCCCEEEEEe
Confidence            4577     78999999988743   3222          2456889998775    479999999999985

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.14  Score=28.71  Aligned_cols=69  Identities=9%  Similarity=-0.064  Sum_probs=42.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|.|+..      -|+  .+.++++     ...||.++-+.++++..  ....+|+.. |+      .|-|++.   | 
T Consensus         4 ~qi~Vk~~------~G~--~~~l~v~-----~~~tV~~lK~~I~~~~gi~~~~qrL~~~-gk------~L~d~~t---L-   59 (76)
T d1z2ma2           4 LSILVRNN------KGR--SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTFE-GK------PLEDQLP---L-   59 (76)
T ss_dssp             EEEEEECT------TSC--EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEET-TE------ECCTTSB---G-
T ss_pred             EEEEEEcC------CCC--EEEEEEC-----CCCcHHHHHHHHHHHhcCChhHeEEEEC-Ce------ECCCCCc---H-
Confidence            56777653      342  4578888     56799999999887652  222233322 22      2333332   2 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.++-
T Consensus        60 -~~y~I~~~sti~l~l   74 (76)
T d1z2ma2          60 -GEYGLKPLSTVFMNL   74 (76)
T ss_dssp             -GGGTCCTTCEEEEEE
T ss_pred             -HHcCCCCCCEEEEEE
Confidence             357899999998764

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.077  Score=30.61  Aligned_cols=67  Identities=7%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..       |.+  +.+++.     ...||.+|-+.++++..  ...-+|+.. |.      .|-++.   .| 
T Consensus         8 i~I~Vkt~-------~~~--~~~~V~-----~~~tV~~lK~~i~~~~gi~~~~qrL~~~-Gk------~L~D~~---tL-   62 (84)
T d1yqba1           8 IKVTVKTP-------KDK--EDFSVT-----DTCTIQQLKEEISQRFKAHPDQLVLIFA-GK------ILKDPD---SL-   62 (84)
T ss_dssp             EEEEEECS-------SCE--EEEEEE-----TTCBHHHHHHHHHHHHTCCGGGEEEEET-TE------ECCTTS---BH-
T ss_pred             EEEEEEcC-------CCc--EEEEEC-----CCCcHHHHHHHHHHHHCcCchhEEEEEe-ee------eccccC---cH-
Confidence            67888874       322  367777     57899999999988763  223334432 22      222222   22 


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++-+++|+.|.++
T Consensus        63 -~~y~i~~gsti~lv   76 (84)
T d1yqba1          63 -AQCGVRDGLTVHLV   76 (84)
T ss_dssp             -HHHTCCTTCEEEEE
T ss_pred             -HHcCCCCCCEEEEE
Confidence             35688999999875

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.24  Score=27.56  Aligned_cols=68  Identities=7%  Similarity=0.112  Sum_probs=43.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+.        +++ +.+++++     ...||.+|=+.+.+..  |....+|+.. |+      +|-|+..+    
T Consensus         2 i~I~Vk~--------~~~-~~~i~v~-----~~~tV~~lK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~tL----   56 (73)
T d2bwfa1           2 LNIHIKS--------GQD-KWEVNVA-----PESTVLQFKEAINKANGIPVANQRLIYS-GK------ILKDDQTV----   56 (73)
T ss_dssp             EEEEEEE--------TTE-EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSBT----
T ss_pred             EEEEEEe--------CCe-EEEEEEC-----CCChHHHHHHHHHHHHCcChHHeEEEEC-Ce------EccCCCcH----
Confidence            6777775        223 2567888     5789999999998876  3334344432 32      33344332    


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.++.
T Consensus        57 -~~~~I~~g~~i~lV~   71 (73)
T d2bwfa1          57 -ESYHIQDGHSVHLVK   71 (73)
T ss_dssp             -GGGTCCTTCEEEEEE
T ss_pred             -HHCCCCCCCEEEEEe
Confidence             257899999998764

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.18  Score=28.55  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=42.5

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|+|+...+      ++ ..++ ++.     ...||.+|=+.+.++.  |....+|+. .|+      .|-|++.   |
T Consensus         1 M~I~Vk~l~G------~~-t~~~~~v~-----~~~TV~~lK~~I~~~~gip~~~qrLi~-~Gk------~L~d~~t---L   58 (76)
T d1wy8a1           1 MWIQVRTIDG------SK-TCTIEDVS-----RKATIEELRERVWALFDVRPECQRLFY-RGK------QLENGYT---L   58 (76)
T ss_dssp             EEEEEEETTC------SC-EEEEEEEC-----TTCBHHHHHHHHHHHSCCCTTTEEEEE-TTE------ECCSSSB---H
T ss_pred             CEEEEEeCCC------Cc-eEEEeccC-----CCChHHHHHHHHHHHHCCCchhcEEEE-Eee------EecCCCC---H
Confidence            8888887543      32 2344 476     5789999999998876  333334433 233      1223322   2


Q ss_pred             CCccCccCCCCEEEEE
Q 034276           78 GQLDTTLEEKDVVVFI   93 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~   93 (99)
                        .++-+++|+.|.++
T Consensus        59 --~~y~I~~~s~i~lv   72 (76)
T d1wy8a1          59 --FDYDVGLNDIIQLL   72 (76)
T ss_dssp             --HHHTCCTTCEEEEE
T ss_pred             --HHcCCCCCCEEEEE
Confidence              35688999999875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.51  E-value=0.1  Score=30.01  Aligned_cols=67  Identities=9%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+|+..+.       +  ++++++     +..||.+|=+.+++...  ...-.|+. .|.      +|-|++.+    
T Consensus        11 i~v~Vk~~~~-------~--~~i~v~-----~~~tV~~lK~~I~~~~~v~~~~qrL~f-~Gk------~L~d~~tL----   65 (83)
T d1wx8a1          11 IRVSVKTPQD-------C--HEFFLA-----ENSNVRRFKKQISKYLHCNADRLVLIF-TGK------ILRDQDIL----   65 (83)
T ss_dssp             EEEEEECSSS-------E--EEEEEE-----TTCCHHHHHHHHHHHTCSCTTTBCCEE-TTE------ECCTTSCH----
T ss_pred             EEEEEEcCCC-------c--EEEEEC-----CCChHHHHHHHHHHHhCCChhHEEEEE-Ehh------ccccCCcH----
Confidence            5788885442       2  357777     57899999999988763  22223322 232      33343322    


Q ss_pred             CccCccCCCCEEEEE
Q 034276           79 QLDTTLEEKDVVVFI   93 (99)
Q Consensus        79 g~~t~L~dgD~V~i~   93 (99)
                       .++-+++|+.|.++
T Consensus        66 -~~~gI~~gs~I~lv   79 (83)
T d1wx8a1          66 -SQRGILDGSTVHVV   79 (83)
T ss_dssp             -HHHTCCTTEEEECC
T ss_pred             -HHcCCCCCCEEEEE
Confidence             24578888888754

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.25  Score=27.92  Aligned_cols=69  Identities=14%  Similarity=0.069  Sum_probs=42.0

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|+||...      |  +...+++.     ...||.+|-+.+.++..  ...-+|+.. |+      .|-|++.   | 
T Consensus         4 ~qi~Vk~~~------G--~~~~l~V~-----~~~tV~~lK~~I~~~~~ip~~~qrLi~~-Gk------~L~d~~t---L-   59 (80)
T d1ttna1           4 CQLRLRLST------G--KDLKLVVR-----STDTVFHMKRRLHAAEGVEPGSQRWFFS-GR------PLTDKMK---F-   59 (80)
T ss_dssp             EEEEEEETT------T--EEEEEEEC-----TTSHHHHHHHHHHHTTCCCSTTCEEEET-TE------ECCTTSH---H-
T ss_pred             EEEEEEcCC------C--CEEEEEEC-----CcCcHHHHHHHHHHHhCCCcccEEEEEC-ce------EcCCCCc---H-
Confidence            466676543      4  34578887     57899999999988663  222233322 22      2323322   2 


Q ss_pred             CccCccCCCCEEEEEe
Q 034276           79 QLDTTLEEKDVVVFIS   94 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p   94 (99)
                       .++-+++|+.|.++-
T Consensus        60 -~~y~I~~~sti~lvi   74 (80)
T d1ttna1          60 -EELKIPKDYVVQVIV   74 (80)
T ss_dssp             -HHCCCSSSCEEEEEC
T ss_pred             -HHcCCCCCCEEEEEe
Confidence             257899999998753

>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinesin-like protein kif1c
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.065  Score=31.90  Aligned_cols=23  Identities=17%  Similarity=0.043  Sum_probs=19.3

Q ss_pred             EEEEcCccceecCCccCccCCCCEEEE
Q 034276           66 LVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        66 ~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      -++|||+.|.    ..++|++||+|.|
T Consensus        70 gt~VNg~~i~----~~~~L~~gD~I~~   92 (102)
T d2g1la1          70 ETYVNGKLVT----EPLVLKSGNRIVM   92 (102)
T ss_dssp             CEEETTEECC----SCEECCTTCEEEE
T ss_pred             CeEECCeEcc----ceeEcCCCCEEEE
Confidence            3799999884    3589999999987

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=90.89  E-value=0.7  Score=27.96  Aligned_cols=66  Identities=9%  Similarity=0.052  Sum_probs=39.1

Q ss_pred             EEEEeCCCCCCCcchHHHHHHHHHHhc-CcccccccccCC--ccccceEEEEcCccceecCCccCccC--CCCEEEEEec
Q 034276           21 HNVDVVPPKGSEKLIMKDLLSWVGTNL-IKERPEMFMKGD--SVRPGVLVLVNDCDWELSGQLDTTLE--EKDVVVFIST   95 (99)
Q Consensus        21 ~~vev~~~~~~~~~tv~dll~~L~~~~-~~~~~~l~~~~g--~l~~~v~ilvNg~di~~l~g~~t~L~--dgD~V~i~p~   95 (99)
                      .+++++..   ++.||-|+|.++.++. |.+.   |..+.  .+=..-.+.|||+..-..   .|.++  ++++|.|-|-
T Consensus        24 ~~y~v~~~---~~~tvld~L~~Ik~~~D~sl~---fr~sCr~giCGsCam~ING~~~lAC---~t~v~~~~~~~i~iePl   94 (106)
T d2bs2b2          24 QEYKIEEA---PSMTIFIVLNMIRETYDPDLN---FDFVCRAGICGSCGMMINGRPSLAC---RTLTKDFEDGVITLLPL   94 (106)
T ss_dssp             EEEEEECC---TTCBHHHHHHHHHHHTCTTCC---CCCSSSSSSSCTTEEEETTEEEEGG---GCBGGGCTTSEEEEECC
T ss_pred             EEEEecCC---CCCcHHHHHHHHHHhcCCcEE---EEeCcCCCCCCcceEEECCccccce---eeeeeccCCCeEEEEEC
Confidence            34555521   6889999999999876 3332   22211  122234689999986543   24333  2457888873

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.36  Score=27.09  Aligned_cols=63  Identities=14%  Similarity=0.026  Sum_probs=42.3

Q ss_pred             EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc-cCccCCCCEEEEEecCCC
Q 034276           20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHG   98 (99)
Q Consensus        20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~-~t~L~dgD~V~i~p~v~G   98 (99)
                      ++.+.+.     ...+++.|.++.+++..-..           ..+-.+-||+.+..-+-. +.-++|||.|.++..-.|
T Consensus        14 ~v~f~v~-----~~t~l~kl~~~y~~~~~~~~-----------~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1          14 EIHFKVK-----MTTHLKKLKESYCQRQGVPM-----------NSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEE-----TTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHhCCCh-----------hHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            4567787     57899999999988664321           234455677776443211 226899999999876554

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.23  E-value=0.17  Score=30.47  Aligned_cols=82  Identities=18%  Similarity=0.066  Sum_probs=47.1

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Ccccccc-cccC-CccccceEEEEcCcccee
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEM-FMKG-DSVRPGVLVLVNDCDWEL   76 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l-~~~~-g~l~~~v~ilvNg~di~~   76 (99)
                      |+|+|+..      -|.  ...++|+     ...||.+|=+.+.++.  |..+.++ ..-. ...+....++.+|+...-
T Consensus         8 M~v~Vk~~------~G~--~~~v~V~-----~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d   74 (105)
T d1v2ya_           8 MTVRVCKM------DGE--VMPVVVV-----QNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTE   74 (105)
T ss_dssp             EEEEEECS------SSC--EEEEEEC-----TTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECC
T ss_pred             EEEEEEeC------CCC--EEEEEEC-----CCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcc
Confidence            67777654      332  4578888     6789999999998765  2222221 0000 012234445556654422


Q ss_pred             cC--CccCccCCCCEEEEEec
Q 034276           77 SG--QLDTTLEEKDVVVFIST   95 (99)
Q Consensus        77 l~--g~~t~L~dgD~V~i~p~   95 (99)
                      ..  =.++-+++||.|.++.-
T Consensus        75 ~~~tL~~~gI~~g~~l~lv~r   95 (105)
T d1v2ya_          75 DRKKLRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             SSSBHHHHTCCSSEEEEEEEC
T ss_pred             cCCCHHHcCCCCCCEEEEEEe
Confidence            11  12578999999998753

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.85  Score=25.49  Aligned_cols=71  Identities=11%  Similarity=0.157  Sum_probs=42.8

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEE-eCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceec
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVD-VVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELS   77 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~ve-v~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l   77 (99)
                      |+|.|+-      +-|++ ...++ ++     ...||.+|=+.++++.  |...-+|+. .|+      +|-|++.   |
T Consensus         1 M~I~Vkt------l~Gk~-t~~l~~v~-----~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L   58 (76)
T d2faza1           1 MWIQVRT------MDGRQ-THTVDSLS-----RLTKVEELRRKIQELFHVEPGLQRLFY-RGK------QMEDGHT---L   58 (76)
T ss_dssp             EEEEEEE------TTSSC-EEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTCB---T
T ss_pred             CEEEEEe------CCCCc-EEEEecCC-----CCCCHHHHHHHHHHHHCcChHHeEEEE-eeE------eccCCCc---H
Confidence            7888864      34543 34554 66     4678999988888776  333333433 233      2223332   3


Q ss_pred             CCccCccCCCCEEEEEec
Q 034276           78 GQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        78 ~g~~t~L~dgD~V~i~p~   95 (99)
                        .++-+++|+.|.++..
T Consensus        59 --~~y~I~~~sti~lv~r   74 (76)
T d2faza1          59 --FDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             --TTTTCCTTCEEEEEEC
T ss_pred             --HHcCCCCCCEEEEEEE
Confidence              3678999999988754

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.71  E-value=0.53  Score=27.05  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=42.3

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc--Cccccccccc--CCccccceEEEEcCccce
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMK--GDSVRPGVLVLVNDCDWE   75 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~--~g~l~~~v~ilvNg~di~   75 (99)
                      |+|+|++.+.        + +++ +++     ...||.+|=+.|.+..  |..+.+|+..  .|.      +|-|+..+ 
T Consensus         8 ~~i~Vk~~~~--------~-~~i~~v~-----~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk------~L~D~~tL-   66 (90)
T d1v5ta_           8 LPIIVKWGGQ--------E-YSVTTLS-----EDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKL-   66 (90)
T ss_dssp             CCEEEEETTE--------E-EEECSCC-----SSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBH-
T ss_pred             EEEEEEECCe--------E-EEEEEeC-----CCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCc------CCCCcCcH-
Confidence            6788876432        2 344 466     5789999999998876  3333344321  222      33333322 


Q ss_pred             ecCCccCccCCCCEEEEEec
Q 034276           76 LSGQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        76 ~l~g~~t~L~dgD~V~i~p~   95 (99)
                          .++.+++|+.|.++..
T Consensus        67 ----~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_          67 ----GALKLKPNTKIMMMGT   82 (90)
T ss_dssp             ----HHHTCCTTEEEEEECC
T ss_pred             ----HHcCCCCCCEEEEEee
Confidence                2467899999998754

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.93  E-value=0.28  Score=29.41  Aligned_cols=60  Identities=7%  Similarity=-0.038  Sum_probs=38.3

Q ss_pred             cCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEE
Q 034276           15 CDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        15 ~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      .|+.  ..|++.     +..||.+|-+.++++..  ...-.|+. .|+      +|-|++.+     .++.+++|+.|.+
T Consensus        37 ~Gk~--~~v~V~-----p~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~tL-----~dygI~~GstI~L   97 (100)
T d1uh6a_          37 LGKK--VRVKCN-----TDDTIGDLKKLIAAQTGTRWNKIVLKK-WYT------IFKDHVSL-----GDYEIHDGMNLEL   97 (100)
T ss_dssp             SSSC--EEEEEE-----TTSBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCSSCBH-----HHHTCCTTEEEEE
T ss_pred             CCCE--EEEEEC-----CcChHHHHHHHHHHHHCCCcceEEEEE-Eee------cccCcCCH-----HHcCCCCCCEEEE
Confidence            5654  456676     57899999999988773  33334433 222      33344332     3678999999988


Q ss_pred             E
Q 034276           93 I   93 (99)
Q Consensus        93 ~   93 (99)
                      |
T Consensus        98 ~   98 (100)
T d1uh6a_          98 Y   98 (100)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.64  Score=25.67  Aligned_cols=34  Identities=6%  Similarity=0.148  Sum_probs=25.9

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL   47 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~   47 (99)
                      |+|+|+...      |+  ...++++     ...||.++=+.++++.
T Consensus         1 m~I~Vk~~~------g~--~~~l~V~-----~~~tV~~lK~~I~~~~   34 (73)
T d1wx9a1           1 LEVLVKTLD------SQ--TRTFIVG-----AQMNVKEFKEHIAASV   34 (73)
T ss_dssp             EEEEEECTT------SC--EEEEEEC-----TTSBHHHHHHHHHHHH
T ss_pred             CEEEEEcCC------CC--EEEEEEC-----CCChHHHHHHHHHHHh
Confidence            788887654      32  4578888     5789999999998876

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.50  E-value=0.081  Score=28.91  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI   93 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~   93 (99)
                      .+.|..|+...+..   .    +.      +.-+...|||+-|+    ++++|++++.|.|+
T Consensus        15 ~g~T~~diA~~I~~---~----l~------k~avaa~vNg~~~d----L~~~l~~d~~veii   59 (59)
T d1nyra2          15 KGTTTEDIAQSISP---G----LR------KKAVAGKFNGQLVD----LTKPLETDGSIEIV   59 (59)
T ss_dssp             TTCCHHHHHHTTCH---H----HH------HHCCEEEETTEEEC----TTSCCCSCBCCCEE
T ss_pred             CCCCHHHHHHHHCh---h----hh------heEEEEEECCEEcc----CCcCcCCCCEEEEC
Confidence            68999999886643   2    21      23566889998775    57999999998775

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=1.6  Score=23.97  Aligned_cols=59  Identities=7%  Similarity=0.026  Sum_probs=39.6

Q ss_pred             eEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEE
Q 034276           19 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFI   93 (99)
Q Consensus        19 ~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~   93 (99)
                      +++.+.+.     ..++++.|+++.+++.....           ..+..+-||+.+..-+- .+--+++||.|.+|
T Consensus        12 ~~v~f~vk-----~~t~l~kl~~~y~~~~~~~~-----------~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_          12 SVVQFKIK-----RHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             CEEEEEEC-----TTSCTHHHHHHHHHHHTCCT-----------TTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             CEEEEEEc-----CCChHHHHHHHHHHHhCCCc-----------cceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            34678887     57899999999987643211           23456678877754322 12268999999886

>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.00  E-value=0.26  Score=32.10  Aligned_cols=60  Identities=5%  Similarity=0.037  Sum_probs=37.8

Q ss_pred             CcchHHHHHHHHHHhcCcccccc-ccc----CCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           32 EKLIMKDLLSWVGTNLIKERPEM-FMK----GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~~~l-~~~----~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .|.|=..||..|..+....-.++ |..    .=.+-.+=.|+|||+.+..   ..+.+++||.|++=+
T Consensus        38 ~g~tg~~ll~llE~RlD~vv~r~gfa~t~~~arQ~v~Hghi~vNgk~v~i---PSy~vk~GDvIsvke  102 (159)
T d1c06a_          38 PGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNI---PSYRVKPGQTIAVRE  102 (159)
T ss_dssp             SSTHHHHHHHHHHHCHHHHHHHHTSSSSHHHHHHHHHTSCEEETTEECCC---SSCCCCSSCEEEECG
T ss_pred             CCCcchhHHHHHHHHhhhhhccCcccCCHHHHHHHHHhcceEccceEEEe---cceeecCCcEEeecc
Confidence            47788888888877653211110 111    0012224459999999876   468999999999843

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.30  E-value=1.6  Score=25.76  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276            1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG   78 (99)
Q Consensus         1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~   78 (99)
                      |+|||-..  .+.+-+.  ...++|+     ...||.+|-+.+..+.  |....+|+.. |+      .|-|+.  ..| 
T Consensus         8 m~itV~~~--~~~~~~~--t~~l~V~-----~~~tV~~LK~~Ie~~~gip~~~Q~Li~~-Gk------~L~dd~--~tL-   68 (102)
T d1v5oa_           8 MLITVYCV--RRDLTEV--TFSLQVN-----PDFELSNFRVLCELESGVPAEEAQIVYM-EQ------LLTDDH--CSL-   68 (102)
T ss_dssp             EEEEEEEC--CCCCCCC--EEEEEEC-----TTCBHHHHHHHHHHHTCCCGGGBCEEET-TE------EECCSS--SBH-
T ss_pred             EEEEEEec--ccCCCCC--EEEEEEC-----CcccHHHHHHHHHHHhCCCcceEEEEeC-Ce------Eeeccc--CCH-
Confidence            56665332  2344442  4578888     6799999988888765  3333344322 22      222221  122 


Q ss_pred             CccCccCCCCEEEEEecCC
Q 034276           79 QLDTTLEEKDVVVFISTLH   97 (99)
Q Consensus        79 g~~t~L~dgD~V~i~p~v~   97 (99)
                       .++-+++||.|.++...+
T Consensus        69 -~~~gI~~g~~i~l~~r~~   86 (102)
T d1v5oa_          69 -GSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             -HHHTCCTTEEEEECBCCC
T ss_pred             -HHcCCCCCCEEEEEECCC
Confidence             356899999999876544

>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=0.21  Score=30.29  Aligned_cols=27  Identities=11%  Similarity=0.030  Sum_probs=20.9

Q ss_pred             EEEcCccceecCCccCccCCCCEEEEEec
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVFIST   95 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~   95 (99)
                      .+|||+.+.  .+..++|++||+|.|-.+
T Consensus        77 T~vN~~~i~--~~~~~~L~~gD~I~ig~~  103 (116)
T d1gxca_          77 TFVNTELVG--KGKRRPLNNNSEIALSLS  103 (116)
T ss_dssp             EEETTEECC--TTCEEECCTTEEEEESST
T ss_pred             ceECCEEcC--CCCEEECCCCCEEEECCC
Confidence            678998764  355689999999998543

>d2exda1 b.40.12.1 (A:72-143) Hypothetical protein PH0471 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: NfeD domain-like
family: NfeD domain-like
domain: Hypothetical protein PH0471
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.84  E-value=0.97  Score=25.35  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             cccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        61 l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      +.+.-.|.++|+.|+...  +++|+.|+.|.+..
T Consensus        27 ~~~~G~V~v~Ge~W~A~s--~~~i~~G~~V~Vv~   58 (72)
T d2exda1          27 AEDHYLVEVEGDKWIAYS--DEKLSLGDRVMVVD   58 (72)
T ss_dssp             CTTCEEEEETTEEEEECC--SSCCCTTCEEEEEE
T ss_pred             cCCCEEEEECCEEEEEEe--CCccCCCCEEEEEE
Confidence            456667999999999986  56899999998864

>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Cell cycle checkpoint protein Chfr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=0.38  Score=28.92  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=20.0

Q ss_pred             EEEcCccceecCCccCccCCCCEEEEEe
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .+|||+.+.-  +..++|++||+|.|..
T Consensus        70 T~vNg~~i~~--~~~~~L~~GD~I~i~~   95 (113)
T d1lgpa_          70 TVINKLKVVK--KQTCPLQTGDVIYLVY   95 (113)
T ss_dssp             CCCCCCCCCC--SSCCCCCTTCEEEEEC
T ss_pred             eEECCEEcCC--CceEECCCCCEEEEee
Confidence            5678877643  4567999999999964

>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.40  E-value=0.34  Score=29.87  Aligned_cols=28  Identities=14%  Similarity=0.104  Sum_probs=21.2

Q ss_pred             EEEcCccceecCCccCccCCCCEEEEEecC
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVFISTL   96 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~v   96 (99)
                      .+|||+.+.  .+..++|++||+|.|=.++
T Consensus        81 T~vNg~~l~--~~~~~~L~~GD~I~iG~~~  108 (127)
T d1g6ga_          81 TWLNGQKVE--KNSNQLLSQGDEITVGVGV  108 (127)
T ss_dssp             CEETTEECC--TTCCEECCTTCEEEECTTS
T ss_pred             eEECCEEec--CCCEEEcCCCCEEEECCCC
Confidence            567998764  3556899999999986443

>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.4  Score=32.37  Aligned_cols=59  Identities=14%  Similarity=0.069  Sum_probs=38.1

Q ss_pred             CcchHHHHHHHHHHhcCcc------cccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           32 EKLIMKDLLSWVGTNLIKE------RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~------~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .|.|-..||..|+.+....      ...++. .=.+-.+=.|+|||+-+..   ..+.+++||.|++=+
T Consensus        81 ~g~tg~~l~~~LE~RLDnvv~R~gfa~t~~~-ARQ~v~Hghi~VNgk~VnI---PSy~vk~GDvIsvke  145 (204)
T d2gy9d1          81 KGNTGENLLALLEGRLDNVVYRMGFGATRAE-ARQLVSHKAIMVNGRVVNI---ASYQVSPNDVVSIRE  145 (204)
T ss_dssp             SSCHHHHHHHHHTTBHHHHHHHHTSSSSHHH-HHHHHHTTCEEESSSBCCC---TTCBCCTTCBEEECT
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhccccccHHH-HHHHHHhcceecCCEEEEe---ccEeecCCCEEEecc
Confidence            4778888888887655321      111110 0112234459999999876   468999999999853

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.25  E-value=3.4  Score=24.51  Aligned_cols=24  Identities=13%  Similarity=0.004  Sum_probs=19.5

Q ss_pred             EEEeCCCCCCCcchHHHHHHHHHHhcCcc
Q 034276           22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKE   50 (99)
Q Consensus        22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~   50 (99)
                      .+.++     ...||.+|=+.+.+.+|..
T Consensus        22 ~~~v~-----~s~TV~~lK~~I~~~~~~~   45 (101)
T d1se9a_          22 PKAFP-----DATTVSALKETVISEWPRE   45 (101)
T ss_dssp             EEEEC-----TTCBHHHHHHHHHHHSCTT
T ss_pred             ceecC-----ccCHHHHHHHHHHHhcccc
Confidence            47787     5789999999999887654

>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Thermus thermophilus [TaxId: 274]

Probab=80.75  E-value=0.55  Score=31.74  Aligned_cols=60  Identities=12%  Similarity=0.023  Sum_probs=37.6

Q ss_pred             CcchHHHHHHHHHHhcCccc-cccccc----CCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276           32 EKLIMKDLLSWVGTNLIKER-PEMFMK----GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS   94 (99)
Q Consensus        32 ~~~tv~dll~~L~~~~~~~~-~~l~~~----~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p   94 (99)
                      .|.|=..||..|+.+....- +.=|..    .=.+-.+=.|+|||+-+..   ..+.+++||.|++-+
T Consensus        85 ~G~tg~~ll~lLE~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~i---ps~~~~~gd~I~vre  149 (208)
T d2uubd1          85 KGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDL---PSYRVRPGDEIAVAE  149 (208)
T ss_dssp             SSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCC---TTCBCCTTCEEEECG
T ss_pred             CCCchHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhcCeecCCeEEEe---ccEEecCCceeehhh
Confidence            47788888888876553111 111111    0112224459999999876   468999999999854

>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.57  E-value=0.32  Score=28.67  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=17.8

Q ss_pred             EEEcCccceecCCccCccCCCCEEEE
Q 034276           67 VLVNDCDWELSGQLDTTLEEKDVVVF   92 (99)
Q Consensus        67 ilvNg~di~~l~g~~t~L~dgD~V~i   92 (99)
                      ++|||+.+.    ..++|++||+|.|
T Consensus        67 t~vNg~~i~----~~~~L~~Gd~i~i   88 (99)
T d2ff4a3          67 VHVQHERIR----SAVTLNDGDHIRI   88 (99)
T ss_dssp             CEETTEECS----SEEEECTTCEEEE
T ss_pred             CeECCEEcC----CceECCCCCEEEE
Confidence            678998873    2468999999987