Citrus Sinensis ID: 034385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEACNDDV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccHHcccccEEEEEHHccccHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MASFAAARSIFRSNSARNAAARLASQaktkaapspfgvsakkplslaalrspveMSFCVESMLPYHTATASALSTSLLSIsqcgygwlpeacnddv
Flexible Loop (DISEMBL)
masfaaarsifrsnsarNAAARLASQaktkaapspfgvsaKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLpeacnddv
Low Complexity Region (SEG)
MasfaaarsifrsnsarnaaarlasqaKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHtatasalstsllsISQCGYGWLPEACNDDV
Disordered region (IsUnstruct)
***********************************************ALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEA*****
Disordered Region (DISOPRED)
******A*******************************************SPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEAC****
Disordered Region (DISEMBL)
********SIFRSNSA*********************VSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEACNDDV
Disordered Region (DISPRO)
********************************************SLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEAC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEACNDDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
356549898	96	PREDICTED: uncharacterized protein LOC10	0.937	0.937	0.717	8e-28
225446443	96	PREDICTED: uncharacterized protein LOC10	0.916	0.916	0.714	1e-26
359485219	96	PREDICTED: uncharacterized protein LOC10	0.906	0.906	0.711	4e-26
356543857	96	PREDICTED: uncharacterized protein LOC10	0.937	0.937	0.673	4e-24
356549900	92	PREDICTED: uncharacterized protein LOC10	0.885	0.923	0.701	7e-24
356543859	95	PREDICTED: uncharacterized protein LOC10	0.875	0.884	0.720	7e-24
359485217	96	PREDICTED: uncharacterized protein LOC10	0.864	0.864	0.686	2e-22
359485215	92	PREDICTED: uncharacterized protein LOC10	0.864	0.902	0.686	3e-22
359485221	92	PREDICTED: uncharacterized protein LOC10	0.864	0.902	0.686	3e-22
224125562	98	predicted protein [Populus trichocarpa]	0.989	0.969	0.616	2e-21

>gi|356549898|ref|XP_003543327.1| PREDICTED: uncharacterized protein LOC100777625 isoform 1 [Glycine max]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 76/92 (82%), Gaps = 2/92 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEACNDDV 96
          YHTATASAL TS+LS+S+  YGWLPE CNDDV
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPEDCNDDV 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446443|ref|XP_002276788.1| PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 75/91 (82%), Gaps = 3/91 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEACNDDV 96
          HTATASAL TS+LSIS+ GYGWLPEACNDDV
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEACNDDV 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485219|ref|XP_003633236.1| PREDICTED: uncharacterized protein LOC100243665 isoform 4 [Vitis vinifera]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 3/90 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEACNDD 95
          HTATASAL TS+LSIS+ GYGWLPEACNDD
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEACNDD 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543857|ref|XP_003540375.1| PREDICTED: uncharacterized protein LOC100788648 isoform 1 [Glycine max]

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEACNDDV 96
          YH+ATASAL TS+LS+S+  YGWLPE     +
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPEGKEKTI 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549900|ref|XP_003543328.1| PREDICTED: uncharacterized protein LOC100777625 isoform 2 [Glycine max]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEA 91
          YHTATASAL TS+LS+S+  YGWLPE 
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPEG 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543859|ref|XP_003540376.1| PREDICTED: uncharacterized protein LOC100788648 isoform 2 [Glycine max]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 2/86 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPE 90
          YH+ATASAL TS+LS+S+  YGWLPE
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPE 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485217|ref|XP_003633235.1| PREDICTED: uncharacterized protein LOC100243665 isoform 3 [Vitis vinifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEA 91
          HTATASAL TS+LSIS+ GYGWLPE 
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485215|ref|XP_003633234.1| PREDICTED: uncharacterized protein LOC100243665 isoform 2 [Vitis vinifera] gi|302143334|emb|CBI21895.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEA 91
          HTATASAL TS+LSIS+ GYGWLPE 
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485221|ref|XP_003633237.1| PREDICTED: uncharacterized protein LOC100243665 isoform 5 [Vitis vinifera]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEA 91
          HTATASAL TS+LSIS+ GYGWLPE 
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125562|ref|XP_002329835.1| predicted protein [Populus trichocarpa] gi|222870897|gb|EEF08028.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 73/99 (73%), Gaps = 4/99 (4%)

Query: 1  MASFAAARSIFRSNSAR-NAAARLASQAK--TKAAPSPFGVSAKKPLSLAALRSPVEMSF 57
          M++ AAARS  RS + R +AAARLAS  K  +K A SPF +S + PLS    RSPVEMS 
Sbjct: 1  MSATAAARSFLRSTATRTSAAARLASAPKPGSKPASSPFRISKESPLSHRIFRSPVEMSC 60

Query: 58 CVESMLPYHTATASALSTSLLSISQCGYGWLPEACNDDV 96
          CVE+MLPYHTATASAL  S+LS+S+  YGW PE CNDD+
Sbjct: 61 CVETMLPYHTATASALLNSMLSVSR-RYGWTPEDCNDDL 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:505006258	100	NFD6 "AT2G20585" [Arabidopsis	0.718	0.69	0.478	2.7e-13
TAIR|locus:4010713673	93	AT2G33847 [Arabidopsis thalian	0.666	0.688	0.384	1.6e-06
TAIR|locus:505006152	95	AT1G28395 "AT1G28395" [Arabido	0.645	0.652	0.328	7e-06

TAIR|locus:505006258 NFD6 "AT2G20585" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 33/69 (47%), Positives = 43/69 (62%)

Query:    28 KTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGW 87
             + K+AP  F  +A++   L+ LR+PVE+SFCVES+LPYH             IS   YGW
Sbjct:    32 QAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGW 91

Query:    88 LPEACNDDV 96
             L +ACNDDV
Sbjct:    92 LSDACNDDV 100

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713673 AT2G33847 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/65 (38%), Positives = 32/65 (49%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGWLPE 90
             +A S F +  + PLS    RSPVE+S CVE+MLPYH             +S     W  +
Sbjct:    29 SARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSGRSI-WTFQ 87

Query:    91 ACNDD 95
              C DD
Sbjct:    88 DCIDD 92

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:505006152 AT1G28395 "AT1G28395" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGWLPE 90
             +A + F +  + PL+    RSPVE+S CVE+MLPYH             +S+   GW+ +
Sbjct:    32 SARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSR--RGWIVD 89

Query:    91 ACND 94
               ++
Sbjct:    90 GLDE 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        57   0.00091  102 3  11 22  0.50    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  92 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.11u 0.13s 7.24t   Elapsed:  00:00:00
  Total cpu time:  7.11u 0.13s 7.24t   Elapsed:  00:00:00
  Start:  Fri May 10 23:13:16 2013   End:  Fri May 10 23:13:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00