Citrus Sinensis ID: 034395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGQNKTR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccHHHcccccEEEEEHHcccHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MASFAAARSIFRSNSARNAAARLASQaktkaapspfgvsakkplslaalrspveMSFCVESMLPYHTATASALSTSLLSIsqcgygwlpegqnktr
Flexible Loop (DISEMBL)
masfaaarsifrsnsarNAAARLASQaktkaapspfgvsaKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQcgygwlpegqnktr
Low Complexity Region (SEG)
MasfaaarsifrsnsarnaaarlasqaKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHtatasalstsllsISQCGYGWLPEGQNKTR
Disordered region (IsUnstruct)
***********************************************ALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWL********
Disordered Region (DISOPRED)
******A*******************************************SPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGW**EG*****
Disordered Region (DISEMBL)
********SIFRSNSA*********************VSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGQNKTR
Disordered Region (DISPRO)
******************************************PLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGY*WLPE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGQNKTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
356543857	96	PREDICTED: uncharacterized protein LOC10	0.927	0.927	0.714	2e-26
359485217	96	PREDICTED: uncharacterized protein LOC10	0.916	0.916	0.703	6e-26
356549900	92	PREDICTED: uncharacterized protein LOC10	0.885	0.923	0.712	1e-24
356549898	96	PREDICTED: uncharacterized protein LOC10	0.916	0.916	0.688	1e-24
356543859	95	PREDICTED: uncharacterized protein LOC10	0.875	0.884	0.720	5e-24
359485215	92	PREDICTED: uncharacterized protein LOC10	0.864	0.902	0.697	5e-23
359485221	92	PREDICTED: uncharacterized protein LOC10	0.864	0.902	0.697	5e-23
225446443	96	PREDICTED: uncharacterized protein LOC10	0.895	0.895	0.674	6e-23
359485219	96	PREDICTED: uncharacterized protein LOC10	0.895	0.895	0.674	8e-23
388518391	93	unknown [Lotus japonicus]	0.927	0.956	0.626	2e-22

>gi|356543857|ref|XP_003540375.1| PREDICTED: uncharacterized protein LOC100788648 isoform 1 [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 2/91 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEGQNKT 95
          YH+ATASAL TS+LS+S+  YGWLPEG+ KT
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPEGKEKT 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485217|ref|XP_003633235.1| PREDICTED: uncharacterized protein LOC100243665 isoform 3 [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 3/91 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEGQNKTR 96
          HTATASAL TS+LSIS+ GYGWLPEGQ+KTR
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEGQDKTR 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549900|ref|XP_003543328.1| PREDICTED: uncharacterized protein LOC100777625 isoform 2 [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEG 91
          YHTATASAL TS+LS+S+  YGWLPEG
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPEG 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549898|ref|XP_003543327.1| PREDICTED: uncharacterized protein LOC100777625 isoform 1 [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 72/90 (80%), Gaps = 2/90 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEGQNK 94
          YHTATASAL TS+LS+S+  YGWLPE  N 
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPEDCND 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543859|ref|XP_003540376.1| PREDICTED: uncharacterized protein LOC100788648 isoform 2 [Glycine max]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 2/86 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPE 90
          YH+ATASAL TS+LS+S+  YGWLPE
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPE 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485215|ref|XP_003633234.1| PREDICTED: uncharacterized protein LOC100243665 isoform 2 [Vitis vinifera] gi|302143334|emb|CBI21895.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEG 91
          HTATASAL TS+LSIS+ GYGWLPEG
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485221|ref|XP_003633237.1| PREDICTED: uncharacterized protein LOC100243665 isoform 5 [Vitis vinifera]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEG 91
          HTATASAL TS+LSIS+ GYGWLPEG
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446443|ref|XP_002276788.1| PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 70/89 (78%), Gaps = 3/89 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEGQNK 94
          HTATASAL TS+LSIS+ GYGWLPE  N 
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEACND 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485219|ref|XP_003633236.1| PREDICTED: uncharacterized protein LOC100243665 isoform 4 [Vitis vinifera]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 70/89 (78%), Gaps = 3/89 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEGQNK 94
          HTATASAL TS+LSIS+ GYGWLPE  N 
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEACND 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518391|gb|AFK47257.1| unknown [Lotus japonicus]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%), Gaps = 2/91 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          +AARS+FRS S+  AA RLAS+AK  AA SPF +++ KPLS ++LRSPV++SFCVESM+P
Sbjct: 4  SAARSMFRSFSSHRAAFRLASEAK--AARSPFRIASNKPLSQSSLRSPVQLSFCVESMMP 61

Query: 65 YHTATASALSTSLLSISQCGYGWLPEGQNKT 95
          +HTATASAL  S+L +S    GWLPEG  KT
Sbjct: 62 FHTATASALMNSMLFVSSRSSGWLPEGHEKT 92

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:505006258	100	NFD6 "AT2G20585" [Arabidopsis	0.687	0.66	0.424	6.6e-10
TAIR|locus:505006152	95	AT1G28395 "AT1G28395" [Arabido	0.666	0.673	0.363	2.3e-07
TAIR|locus:4010713673	93	AT2G33847 [Arabidopsis thalian	0.531	0.548	0.411	1.5e-05

TAIR|locus:505006258 NFD6 "AT2G20585" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query:    28 KTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGW 87
             + K+AP  F  +A++   L+ LR+PVE+SFCVES+LPYH             IS   YGW
Sbjct:    32 QAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGW 91

Query:    88 LPEGQN 93
             L +  N
Sbjct:    92 LSDACN 97

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006152 AT1G28395 "AT1G28395" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGWLPE 90
             +A + F +  + PL+    RSPVE+S CVE+MLPYH             +S+   GW+ +
Sbjct:    32 SARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSR--RGWIVD 89

Query:    91 GQNKTR 96
             G ++TR
Sbjct:    90 GLDETR 95

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:4010713673 AT2G33847 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXIS 81
             +A S F +  + PLS    RSPVE+S CVE+MLPYH             +S
Sbjct:    29 SARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPYHTATASALLNSMLSVS 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        57   0.00091  102 3  11 22  0.36    28
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  470 (50 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.89u 0.14s 6.03t   Elapsed:  00:00:01
  Total cpu time:  5.89u 0.14s 6.03t   Elapsed:  00:00:01
  Start:  Fri May 10 23:30:29 2013   End:  Fri May 10 23:30:30 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00