Citrus Sinensis ID: 034530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Secondary Structure (PSIPRED)
cccccEEccccccccEEEcccccccccccHHHHHHccccEEcccccccEEEccHHHHcccccccEEEccccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccEEEcccccccccHHHHHHccHHHHHEEcccccccccEcHHHHHHcccccEEEcccccccccEEcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLrelhlrdtgfkgtfdvrefdsfnnlevldlswneidnlvvpqgkqlkcYLITLF
Flexible Loop (DISEMBL)
midkfvvskglsklkslglagiklNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIdnlvvpqgkqlkcylitlf
Low Complexity Region (SEG)
MIDKFVVskglsklkslglagiklNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Disordered region (IsUnstruct)
****FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITL*
Disordered Region (DISOPRED)
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Disordered Region (DISEMBL)
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Disordered Region (DISPRO)
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q3E991	659	Probable inactive leucine	yes	no	0.760	0.106	0.458	4e-06

>sp|Q3E991|Y5269_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           K +SKLK L L   K   SI SS+T    L ELH++     G     EF S  NL+VLDL
Sbjct: 141 KDMSKLKRLFLDHNKFEGSIPSSITQLPQLEELHMQSNNLTGEIPP-EFGSMKNLKVLDL 199

Query: 69  SWNEIDNLVVPQ 80
           S N +D  +VPQ
Sbjct: 200 STNSLDG-IVPQ 210

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
224142513	290	predicted protein [Populus trichocarpa]	0.706	0.224	0.492	4e-08
297745116	139	unnamed protein product [Vitis vinifera]	0.847	0.561	0.419	2e-07
359482757	1027	PREDICTED: LRR receptor-like serine/thre	0.858	0.076	0.376	8e-07
359483099	1231	PREDICTED: probable LRR receptor-like se	0.793	0.059	0.421	1e-06
359483163	1047	PREDICTED: LRR receptor-like serine/thre	0.663	0.058	0.491	4e-06
359482740	1093	PREDICTED: receptor-like protein 12-like	0.847	0.071	0.382	7e-06
297743520	450	unnamed protein product [Vitis vinifera]	0.847	0.173	0.369	1e-05
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.847	0.076	0.369	1e-05
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.847	0.068	0.369	2e-05
359482731	918	PREDICTED: probable LRR receptor-like se	0.858	0.086	0.364	3e-05

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
           L+KL+SL L     N SILSS    SSL+ ++L     KG+ D++EFDS + L+ LDLS 
Sbjct: 141 LTKLESLDLGLNNFNNSILSSFKGLSSLKHIYLESNQLKGSIDIKEFDSLSKLQELDLSR 200

Query: 71  NEIDNLVVPQG 81
           NEI NLV   G
Sbjct: 201 NEIQNLVTSTG 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745116|emb|CBI38955.3| unnamed protein product [Vitis vinifera]

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 9   KGLSKLKSL---GLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 65
           KGLS LK L    ++G + ++S L SL   SSL+ L L   G+ G+F ++E  S  NL+V
Sbjct: 59  KGLSSLKKLEILDISGNEFDKSDLKSLGAISSLKTLALCSMGWDGSFPIQELASLRNLKV 118

Query: 66  LDLSWNEIDNLVVPQGKQLKC 86
           LDLS+N++++  + QG  L C
Sbjct: 119 LDLSYNDLESFQLVQGTSLTC 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 3   DKFVVSKG------LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVRE 56
           D F+ ++G      L KL+ L ++G + ++S L SL+  +SL+ L +   G  G+F +RE
Sbjct: 130 DGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLSAITSLKTLAICSMGLAGSFPIRE 189

Query: 57  FDSFNNLEVLDLSWNEIDNLVVPQG 81
             S  NLEVLDLS+N++++  + QG
Sbjct: 190 LASLRNLEVLDLSYNDLESFQLVQG 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 9   KGLSKLKSL---GLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 65
           KGLS LK L    ++G + ++S L SL   +SL+ L +R  G  G+F ++E  S  NLEV
Sbjct: 139 KGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPIQELASSRNLEV 198

Query: 66  LDLSWNEIDNLVVPQG 81
           LDLS+N++++  + QG
Sbjct: 199 LDLSYNDLESFQLVQG 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483163|ref|XP_002263908.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
           L +L++L L+   LNRS+L  L+   SLR L L D G +G F   E  +FNNLE+LDLS 
Sbjct: 135 LKRLETLDLSDNSLNRSMLRVLSKLPSLRNLKLSDNGLQGPFPAEELGNFNNLEMLDLSA 194

Query: 71  N 71
           N
Sbjct: 195 N 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482740|ref|XP_003632823.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 3   DKFVVSKGLSKLKSL---GLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDS 59
           D F+ ++GLS LK L    ++G +  +S+L SL   +SL+ L +   G   +F +RE  S
Sbjct: 99  DGFIENEGLSSLKKLEILDISGNEFEKSVLKSLDTITSLKTLAICSMGLNESFSIRELAS 158

Query: 60  FNNLEVLDLSWNEIDNLVVPQ 80
             NLEVLDLS+N++++  + Q
Sbjct: 159 LRNLEVLDLSYNDLESFQLLQ 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743520|emb|CBI36387.3| unnamed protein product [Vitis vinifera]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 6/84 (7%)

Query: 3   DKFVVSKG------LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVRE 56
           D F+ ++G      L KL+ L ++G + ++S L SL   +SL+ L +   G  G+F +RE
Sbjct: 57  DGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSIRE 116

Query: 57  FDSFNNLEVLDLSWNEIDNLVVPQ 80
             S  NLEVLDLS+N++++  + Q
Sbjct: 117 LASLRNLEVLDLSYNDLESFQLLQ 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 6/84 (7%)

Query: 3   DKFVVSKG------LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVRE 56
           D F+ ++G      L KL+ L ++G + ++S L SL   +SL+ L +   G  G+F +RE
Sbjct: 130 DGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSIRE 189

Query: 57  FDSFNNLEVLDLSWNEIDNLVVPQ 80
             S  NLEVLDLS+N++++  + Q
Sbjct: 190 LASLRNLEVLDLSYNDLESFQLLQ 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 6/84 (7%)

Query: 3   DKFVVSKG------LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVRE 56
           D F+ ++G      L KL+ L ++G + ++S L SL   +SL+ L +   G  G+F +RE
Sbjct: 130 DGFIENEGFEGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICRMGLNGSFSIRE 189

Query: 57  FDSFNNLEVLDLSWNEIDNLVVPQ 80
             S  NLEVLDLS+N++++  + Q
Sbjct: 190 LASLRNLEVLDLSYNDLESFQLLQ 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482731|ref|XP_003632819.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 6/85 (7%)

Query: 3   DKFVVSKG------LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVRE 56
           D F+ ++G      L KL+ L ++G + ++S L SL   +SL+ L +   G  G+F +RE
Sbjct: 99  DGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLYGSFSIRE 158

Query: 57  FDSFNNLEVLDLSWNEIDNLVVPQG 81
             S  NLE LDLS+N++++  + QG
Sbjct: 159 LASLRNLEGLDLSYNDLESFQLLQG 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2180409	659	PRK6 "pollen receptor like kin	0.565	0.078	0.462	0.00018

TAIR|locus:2180409 PRK6 "pollen receptor like kinase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 25/54 (46%), Positives = 31/54 (57%)

Query:    27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80
             SI SS+T    L ELH++     G     EF S  NL+VLDLS N +D  +VPQ
Sbjct:   159 SIPSSITQLPQLEELHMQSNNLTGEIPP-EFGSMKNLKVLDLSTNSLDG-IVPQ 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        75   0.00091  102 3  11 22  0.46    28
                                                     29  0.47    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.38u 0.10s 9.48t   Elapsed:  00:00:00
  Total cpu time:  9.38u 0.10s 9.48t   Elapsed:  00:00:00
  Start:  Thu May  9 18:38:03 2013   End:  Thu May  9 18:38:03 2013

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XVIII001033	hypothetical protein (290 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.4097.1.1	hypothetical protein (226 aa)			•						0.461
	eugene3.00110941	hypothetical protein (581 aa)			•						0.432
	gw1.V.3546.1	hypothetical protein (531 aa)			•						0.400

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.28
PLN03150	623	hypothetical protein; Provisional	99.13
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.86
PLN03150	623	hypothetical protein; Provisional	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.51
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.34
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.2
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.13
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.06
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.04
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.54
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.36
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.33
smart00370	26	LRR Leucine-rich repeats, outliers.	96.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.79
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	94.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.9
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.9
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.89
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	89.49
PRK15386	426	type III secretion protein GogB; Provisional	86.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	85.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	84.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.1
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	80.44

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.28  E-value=3.4e-12  Score=64.72  Aligned_cols=61  Identities=30%  Similarity=0.396  Sum_probs=55.3

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI   73 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l   73 (92)
                      |+|+.+++++|++....+..|..+++|+.+++++|.++...+ +.|.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            578999999999998777789999999999999999996665 6799999999999999985

...

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=1.3e-10  Score=81.78  Aligned_cols=72  Identities=26%  Similarity=0.411  Sum_probs=65.1

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      ++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+| +.++++++|+.|++++|++++..|..
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECcCCcccccCChH
Confidence            5578899999999999999999999999999999999999999998 46899999999999999999887753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.93  E-value=1.2e-09  Score=79.55  Aligned_cols=66  Identities=30%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+++..| ..+..+++|+.+|+++|++.+.
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~  562 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGE  562 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCccccc
Confidence            34444444444444444444444444444444444444444444 2344444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.86  E-value=5.4e-09  Score=76.20  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.+++|+.+++++|.+.+.+|..+..+++|+.+++++|++.+.+| ..+.+++.|+.+++++|++.+..|.
T Consensus       518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCC
Confidence            45678999999999999999999999999999999999999999998 4688899999999999999986664

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=5.8e-09  Score=73.53  Aligned_cols=67  Identities=25%  Similarity=0.433  Sum_probs=61.5

Q ss_pred             CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530           14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus        14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+| ..++.+++|+.|++++|++++..|...
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHH
Confidence            6789999999999999999999999999999999999998 468999999999999999999877643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=7.5e-09  Score=62.68  Aligned_cols=69  Identities=25%  Similarity=0.332  Sum_probs=17.8

Q ss_pred             cccccC-CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhc-CCCCCCCEEeccCCcCCCc
Q 034530            4 KFVVSK-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF-DSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         4 ~~~~l~-~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~~~L~~l~ls~N~l~~~   76 (92)
                      .++.++ .+.+++.|++++|.+...  +.+..++.|+.|++++|+++...+  .+ ..+++|++|++++|++...
T Consensus        33 ~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   33 TIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE--GLDKNLPNLQELYLSNNKISDL  103 (175)
T ss_dssp             ---S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH-TT--EEE-TTS---SC
T ss_pred             cccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc--chHHhCCcCCEEECcCCcCCCh
Confidence            334444 345555555665555532  234445555555555555553211  12 2355555555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.74  E-value=1.1e-09  Score=66.52  Aligned_cols=80  Identities=25%  Similarity=0.422  Sum_probs=62.2

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC----CCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP----QGK   82 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~----~~~   82 (92)
                      .+..+.+|+.+++++|+++. .|..++.++.|+.++++.|++. ..|. .|+.+|.|+++|+++|++......    ...
T Consensus        51 nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   51 NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhhccccccccccCCcchhHHH
Confidence            34567788888999999885 5888999999999999999988 4553 699999999999999999776443    235


Q ss_pred             chhhHHh
Q 034530           83 QLKCYLI   89 (92)
Q Consensus        83 ~l~~~~~   89 (92)
                      .++++.+
T Consensus       128 tlralyl  134 (264)
T KOG0617|consen  128 TLRALYL  134 (264)
T ss_pred             HHHHHHh
Confidence            5555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.63  E-value=5.4e-08  Score=46.25  Aligned_cols=39  Identities=33%  Similarity=0.465  Sum_probs=22.8

Q ss_pred             CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530           37 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        37 ~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      +|+++++++|+++...+  .+.++++|+.+++++|++++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc--hHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666664322  3666777777777777766554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.62  E-value=2.9e-08  Score=60.13  Aligned_cols=74  Identities=26%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             CccccccCCCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            2 IDKFVVSKGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         2 ~~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      |.+++.+..++.|+.|++++|+++.. ...+ ..+++|+.|++++|++........+..+++|+.|++.+|.++..
T Consensus        54 I~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   54 ITKLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CccccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            45677788899999999999999975 3344 46899999999999998766555677899999999999998754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.51  E-value=4.7e-08  Score=49.30  Aligned_cols=49  Identities=27%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             CCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530           36 SSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus        36 ~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      ++|+.+++++|+++...+ +.|.++++|+++++++|+++.+++..+..+.
T Consensus         1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~   49 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSIPPDAFSNLP   49 (61)
T ss_dssp             TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEEETTTTTTST
T ss_pred             CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCccCHHHHcCCC
Confidence            478999999999996544 6799999999999999999999887554443

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.50  E-value=9.6e-09  Score=71.77  Aligned_cols=70  Identities=30%  Similarity=0.380  Sum_probs=40.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      |+-++..|+.|++|+|.++.+.+..+..+++|++|++++|++....+ +.|..+..|++|+|++|.++...
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~l~  357 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE-GSFRVLSQLEELNLSHNSIDHLA  357 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh-hHHHHHHHhhhhcccccchHHHH
Confidence            45556666666666666666666666666666666666666664333 34544555555555555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.36  E-value=1.4e-07  Score=66.13  Aligned_cols=74  Identities=26%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      +-.|.+++.++++.|+++..-.-++.+++.|+.|++++|.+....+ +.|..++.|+.|||++|+++..++..+.
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i~~l~~~sf~  338 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRITRLDEGSFR  338 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chhhhcccceeEeccccccccCChhHHH
Confidence            3467778888888888886555567788888899999999887666 6788888999999999999888877543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=8.2e-07  Score=42.14  Aligned_cols=39  Identities=18%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT   51 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~   51 (92)
                      ++|+.|++++|+++. +|+.+..+++|+.+++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence            578999999999996 476799999999999999999953

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.34  E-value=1.1e-07  Score=63.85  Aligned_cols=76  Identities=22%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ   83 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~   83 (92)
                      .+.++++|+.+++++|.+..+-+..|...+.++.|.+..|++.... ...|.++..|++|+|..|+|+.+.+..+..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecccccc
Confidence            4678999999999999999988889999999999999999999544 467899999999999999999988875443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.20  E-value=2.1e-07  Score=56.78  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC--CCc
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP--QGK   82 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~--~~~   82 (92)
                      ++.+-.++.+..+.+|.|.+. .+|+.+..+.+|+.+++.+|++....+  .+..++.|++++++.|++...|..  +++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~--~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPT--SISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcCh--hhhhchhhhheecchhhhhcCccccCCCc
Confidence            445556778888999999999 468899999999999999999996554  589999999999999999876654  344


Q ss_pred             chhhHHh
Q 034530           83 QLKCYLI   89 (92)
Q Consensus        83 ~l~~~~~   89 (92)
                      .+.-+++
T Consensus       103 ~levldl  109 (264)
T KOG0617|consen  103 ALEVLDL  109 (264)
T ss_pred             hhhhhhc
Confidence            4444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.13  E-value=7.4e-07  Score=60.26  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=11.5

Q ss_pred             cCCCCCCCEEeccCCcCCCcCCC
Q 034530           57 FDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        57 ~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.++.+|.++|+.+|.+..+||.
T Consensus       501 l~nm~nL~tLDL~nNdlq~IPp~  523 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQQIPPI  523 (565)
T ss_pred             hhhhhhcceeccCCCchhhCChh
Confidence            44444555555555555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.06  E-value=7.4e-07  Score=60.24  Aligned_cols=72  Identities=31%  Similarity=0.297  Sum_probs=57.6

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.+++++.|+.+.++.|+++-. |+.. ..++++..+|++.|+++. +| +++--+.+|+.+|+|+|.+++.+.+
T Consensus       221 lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdNklke-~P-de~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  221 LPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDNKLKE-VP-DEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             CCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeecccccccc-Cc-hHHHHhhhhhhhcccCCccccCCcc
Confidence            45667777788888888888854 5555 489999999999999995 55 3566688999999999999998876

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.04  E-value=2.6e-07  Score=67.17  Aligned_cols=46  Identities=30%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG   50 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~   50 (92)
                      ++.+.++..|+.|++++|++.......+.++..|+.|++++|.++.
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~  421 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT  421 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence            3445566667777777776665544555666666666666666663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.04  E-value=1.8e-06  Score=61.54  Aligned_cols=77  Identities=21%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             ccCCCCCCCEEeccCccCCC-CChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530            7 VSKGLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      .++.+|.|+.+.+-.|++.. -+|..+..+..|+.+|+++|++.. .|. .+...++.-+|+||+|+|..+|..-+.+|.
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cch-hhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            45667777777777777765 467788888888888888888884 442 466677777888888888877766444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.00  E-value=3.8e-07  Score=66.34  Aligned_cols=69  Identities=29%  Similarity=0.384  Sum_probs=60.8

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.|+.|.+.+|.+...+-+.+....+|+.|++++|++. .+|...+.+++.|+.|+||+|+++..+..
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~t  425 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDT  425 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence            3566888999999999988888999999999999999999 56667789999999999999999988743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.89  E-value=1e-05  Score=51.53  Aligned_cols=72  Identities=24%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             cccccCCCCCCCEEeccCc--cCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            4 KFVVSKGLSKLKSLGLAGI--KLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         4 ~~~~l~~l~~L~~l~ls~n--~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+..+..+++|+.|.++.|  +..+-.+.....+++|+++.++.|+++..........+.+|..||+.+|..+.
T Consensus        57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   57 TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            3556778889999999999  66665555555669999999999999864333346667788899998887766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.87  E-value=2.9e-06  Score=55.81  Aligned_cols=64  Identities=28%  Similarity=0.361  Sum_probs=45.4

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.|+.+++|+|.++. +..+..-.+.++.|++++|.+. .+.  .+..+++|..||+|+|.++....+
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gw  347 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGW  347 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhh
Confidence            446677888888774 3566777788888888888877 333  366677888888888877766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.87  E-value=5.9e-06  Score=55.85  Aligned_cols=66  Identities=27%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +..+++|+.+++++|.+....  .+..++.|+.|++.+|.+....   .+..+++|+.+++++|++..+..
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhh
Confidence            334444444555555444321  2333334444555555444221   23334455555555555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.82  E-value=2.8e-06  Score=60.62  Aligned_cols=64  Identities=17%  Similarity=0.137  Sum_probs=28.5

Q ss_pred             CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +-.|++|+|+++.+..+-+.+++.|-.||+++|++....|  .+..+..|++|+|++|.+..+...
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHh
Confidence            3344444444443322233444444455555555543333  244444455555555544444333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.82  E-value=6.1e-06  Score=55.69  Aligned_cols=74  Identities=16%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEE-eccCCcCCCcCCCCCcchhhH
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL-DLSWNEIDNLVVPQGKQLKCY   87 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l-~ls~N~l~~~~~~~~~~l~~~   87 (92)
                      ....+++..|.++.+.+..|..+.+|+.+|+++|+++..-| ++|.+++++..+ +.++|+|+..+...+..|..+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            45667889999998777788899999999999999997666 688888888555 445689998888766666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.70  E-value=7e-05  Score=46.62  Aligned_cols=74  Identities=23%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      -++..+..++.|..|.+++|++..+.|.--..++++..|.+.+|.+......+.+..+|.|+.|.+-.|+.+..
T Consensus        55 ~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen   55 RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence            34567778888888888888888665544445677888888888888665555567788888888877777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.64  E-value=8.8e-05  Score=53.86  Aligned_cols=71  Identities=21%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchhhHHh
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI   89 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~~~~~   89 (92)
                      ++|+.|++++|.+.. +|..+  .++|+.|++++|++.. +|. .+  .+.|+.|++++|+++..++.....++.+.+
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~-~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdL  395 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPE-TL--PPTITTLDVSRNALTNLPENLPAALQIMQA  395 (754)
T ss_pred             ccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CCh-hh--cCCcCEEECCCCcCCCCCHhHHHHHHHHhh
Confidence            467777777777775 34443  2678888888888874 442 23  357888888888888776654445555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.62  E-value=5.9e-05  Score=48.64  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+.+++.+++++|.+.+.    ++..+...++|+.+++++|.+.+....   ..+..+++|++|++++|.+++
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            334555555555555531    112233344555556555555432210   123345556666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=4.1e-06  Score=54.48  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            2 IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         2 ~~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.++.+..|+.|+.|.+|-|.++..  ..+..|++|+.+.++.|.+.+.-....+.++|+|++|.|..|...+..+.
T Consensus        31 L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   31 LDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             ccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            56678888999999999999999974  45888999999999999998765555678899999999999988776553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.54  E-value=1.8e-05  Score=52.23  Aligned_cols=76  Identities=24%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh--------------------hhcCCCCCCCEEecc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV--------------------REFDSFNNLEVLDLS   69 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--------------------~~~~~~~~L~~l~ls   69 (92)
                      -.|+++.+++|.|++... . ++..+++|+.||+++|.++....-                    ..++.+.+|..||++
T Consensus       305 L~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS  382 (490)
T ss_pred             hccceeEEeccccceeee-h-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence            346667777777766642 1 256666667777777666543210                    012334456666666


Q ss_pred             CCcCCCcCCC-CCcchhhH
Q 034530           70 WNEIDNLVVP-QGKQLKCY   87 (92)
Q Consensus        70 ~N~l~~~~~~-~~~~l~~~   87 (92)
                      .|+|+....- .++++.|+
T Consensus       383 ~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  383 SNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             ccchhhHHHhcccccccHH
Confidence            6666554432 34455554

>PLN03210 Resistant to P

Probab=97.53  E-value=0.00032  Score=52.99  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=29.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      ++.+++|+.|++++|.....+|..+..+++|+.+++++|..-..+|. .+ ++++|+.|++++|
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCC
Confidence            34445555555555443344455555555566666555433333331 11 3444444444443

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.48  E-value=2.6e-05  Score=46.07  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=50.9

Q ss_pred             CCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ....|...++++|.+... |+.| .+++.++.+++++|.+++ +|+ ++..++.|+.++++.|.+...+..
T Consensus        51 ~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisd-vPe-E~Aam~aLr~lNl~~N~l~~~p~v  118 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISD-VPE-ELAAMPALRSLNLRFNPLNAEPRV  118 (177)
T ss_pred             CCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhh-chH-HHhhhHHhhhcccccCccccchHH
Confidence            334566688999999865 4445 456788899999999984 564 488889999999999988776544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.46  E-value=0.0001  Score=53.70  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +|+.|++++|.+.. +|..   ..+|+.|++++|+++ .+| ..+.++++++.+++++|++++..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP-~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccC-hHHhhccCCCeEECCCCCCCchHH
Confidence            44455555555543 2321   234556666777766 455 357778889999999999987643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.43  E-value=8.2e-05  Score=47.98  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=16.1

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCC---CcEEecCCCccC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSS---LRELHLRDTGFK   49 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~---L~~l~l~~n~l~   49 (92)
                      +++|+.+++++|.+.+..+..+..+..   |+.+++++|.+.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            444444444444444322333332222   444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.43  E-value=0.00056  Score=49.82  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=22.4

Q ss_pred             CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           37 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        37 ~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +|+.|++++|+++. +|. .+  .++|+.|++++|++++.+.
T Consensus       263 ~L~~L~Ls~N~L~~-LP~-~l--~~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        263 ALQSLDLFHNKISC-LPE-NL--PEELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             CCCEEECcCCccCc-ccc-cc--CCCCcEEECCCCccccCcc
Confidence            56666666666663 331 22  2467777777777776554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.42  E-value=7.8e-05  Score=50.48  Aligned_cols=69  Identities=22%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+.+++.+++.+|.+... ...+..+++|+.+++++|.+....+   +..++.|+.|++++|.+..+...
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~~  158 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISGL  158 (414)
T ss_pred             ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccCC
Confidence            477889999999999999963 3237779999999999999997655   66677899999999999888654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.36  E-value=0.00011  Score=49.15  Aligned_cols=64  Identities=30%  Similarity=0.373  Sum_probs=43.2

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +++.+++++|.+.. +|..+..++.|+.|+++.|++....+  ..+..++|+.+++++|++...+..
T Consensus       141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~  204 (394)
T COG4886         141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLPPE  204 (394)
T ss_pred             hcccccccccchhh-hhhhhhccccccccccCCchhhhhhh--hhhhhhhhhheeccCCccccCchh
Confidence            67777777777774 24556677777777777777775443  232567777777777777777664

>PLN03210 Resistant to P

Probab=97.28  E-value=0.00057  Score=51.72  Aligned_cols=58  Identities=26%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      ++|+.|++++|.....+|..+..+++|+.|++++|..-..+|.. . ++++|+.|++++|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGC  835 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCC
Confidence            56778888888766667888888888888888876544445521 1 3444444444443

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.19  E-value=0.00014  Score=53.69  Aligned_cols=66  Identities=26%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      +..|+.|+.||+++|.=-+..|..++.+.+|++|+++.+.++ ..|. .++++..|.+||+..+.-..
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~  632 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLE  632 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccc
Confidence            677899999999998777788999999999999999999988 4553 58888889999988775433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.17  E-value=4e-05  Score=55.46  Aligned_cols=64  Identities=27%  Similarity=0.361  Sum_probs=34.8

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh---------------------hhcCCCCCCCEEecc
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV---------------------REFDSFNNLEVLDLS   69 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~---------------------~~~~~~~~L~~l~ls   69 (92)
                      ++-++.|+++.|++... . .+..++.|++||+++|.+.- +|.                     -.+.++.+|..||++
T Consensus       186 l~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhhh-H-HHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            34455555555555532 1 44555555555555555552 221                     013446677777777


Q ss_pred             CCcCCCcC
Q 034530           70 WNEIDNLV   77 (92)
Q Consensus        70 ~N~l~~~~   77 (92)
                      +|-+.+..
T Consensus       263 yNll~~hs  270 (1096)
T KOG1859|consen  263 YNLLSEHS  270 (1096)
T ss_pred             Hhhhhcch
Confidence            77776653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.01  E-value=6.3e-05  Score=54.48  Aligned_cols=64  Identities=25%  Similarity=0.359  Sum_probs=52.9

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ..|...+++.|++. .....+.-++.++.|++++|++... .  .+..++.|++||+++|.+..++--
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~--~Lr~l~~LkhLDlsyN~L~~vp~l  227 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D--NLRRLPKLKHLDLSYNCLRHVPQL  227 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H--HHHhcccccccccccchhcccccc
Confidence            34667788899888 4467788889999999999999953 2  578899999999999999887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.85  E-value=0.00051  Score=27.56  Aligned_cols=16  Identities=44%  Similarity=0.538  Sum_probs=9.0

Q ss_pred             CCEEeccCCcCCCcCC
Q 034530           63 LEVLDLSWNEIDNLVV   78 (92)
Q Consensus        63 L~~l~ls~N~l~~~~~   78 (92)
                      |++||+++|+++.+++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            5556666666664444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.81  E-value=0.00053  Score=45.86  Aligned_cols=68  Identities=28%  Similarity=0.413  Sum_probs=53.8

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCC-CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFS-SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~-~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ..+..+..+++.+|.+.. +++...... +|+.+++++|++....  ..++.+++|+.|++++|++...++.
T Consensus       113 ~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         113 LELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             hcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhh
Confidence            345678888999998885 455566664 8999999999999542  2478899999999999999998875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.00049  Score=45.47  Aligned_cols=68  Identities=26%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcC
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI   73 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l   73 (92)
                      ..+.+||.++.|+++.|.+...+........+|+.+.+.+..+.+.--......+|.++.+++|.|.+
T Consensus        91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            35667888888888888888755443356677888888877777654323355677778888887743

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.78  E-value=0.0011  Score=25.01  Aligned_cols=16  Identities=50%  Similarity=0.636  Sum_probs=8.4

Q ss_pred             CCCCEEeccCCcCCCc
Q 034530           61 NNLEVLDLSWNEIDNL   76 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~   76 (92)
                      ++|+.|++++|+++..
T Consensus         1 ~~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSL   16 (17)
T ss_dssp             TT-SEEEETSS--SSE
T ss_pred             CccCEEECCCCCCCCC
Confidence            3567777777776654

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.71  E-value=0.0033  Score=46.12  Aligned_cols=16  Identities=31%  Similarity=0.389  Sum_probs=8.9

Q ss_pred             CCCEEeccCCcCCCcC
Q 034530           62 NLEVLDLSWNEIDNLV   77 (92)
Q Consensus        62 ~L~~l~ls~N~l~~~~   77 (92)
                      +|+.|++++|++++.|
T Consensus       343 ~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        343 GLQELSVSDNQLASLP  358 (788)
T ss_pred             ccceEecCCCccCCCC
Confidence            4555566655555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.64  E-value=0.00017  Score=42.68  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=53.9

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.++.+++++|.++. +|.++..++.|+.++++.|.+... |+ .+..+.++-.||..+|....++-
T Consensus        75 kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~-p~-vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAE-PR-VIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccc-hH-HHHHHHhHHHhcCCCCccccCcH
Confidence            45678899999999995 588899999999999999999954 42 45558888888888887766554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.61  E-value=0.0021  Score=46.60  Aligned_cols=66  Identities=23%  Similarity=0.454  Sum_probs=37.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..++|+|..||+|+.+++..  ..++.+++|+.|.+.+=.+........+.++++|++||+|......
T Consensus       169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence            44677777777777777643  4455555555555544333322222234556667777776554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0011  Score=45.48  Aligned_cols=15  Identities=47%  Similarity=0.638  Sum_probs=7.4

Q ss_pred             CCCCCEEeccCCcCC
Q 034530           60 FNNLEVLDLSWNEID   74 (92)
Q Consensus        60 ~~~L~~l~ls~N~l~   74 (92)
                      ++.|+.|++..|++.
T Consensus       300 f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR  314 (505)
T ss_pred             cccceeeecccCccc
Confidence            444555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.17  E-value=0.0045  Score=25.55  Aligned_cols=19  Identities=42%  Similarity=0.443  Sum_probs=13.2

Q ss_pred             CCCCEEeccCCcCCCcCCC
Q 034530           61 NNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++|+.|++++|+++.+++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.17  E-value=0.0045  Score=25.55  Aligned_cols=19  Identities=42%  Similarity=0.443  Sum_probs=13.2

Q ss_pred             CCCCEEeccCCcCCCcCCC
Q 034530           61 NNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++|+.|++++|+++.+++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5677777777777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.00072  Score=46.37  Aligned_cols=18  Identities=28%  Similarity=0.479  Sum_probs=9.5

Q ss_pred             CCCCCCCEEeccCccCCC
Q 034530            9 KGLSKLKSLGLAGIKLNR   26 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~   26 (92)
                      .++|+|+.|+++.|++..
T Consensus       169 eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             HhcccchhcccccccccC
Confidence            345555555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.12  E-value=0.00081  Score=47.62  Aligned_cols=68  Identities=25%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +..+..+.+++++.|+++.. |..+..++ |+.+.+++|+++...+  .++..+.|..+|.+.|++...++.
T Consensus       117 i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slpsq  184 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPSQ  184 (722)
T ss_pred             hhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCccccCCc--ccccchhHHHhhhhhhhhhhchHH
Confidence            34566777888888888853 55666665 7788888888884433  466777888888888888877665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.09  E-value=0.0013  Score=46.65  Aligned_cols=68  Identities=21%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++++.+|+.+.+..|++... |++.. .=.|..||++.|++. .+|. .|.+++.|++|-|.+|.+++.+.
T Consensus       184 ql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccCcee-ecch-hhhhhhhheeeeeccCCCCCChH
Confidence            344555555555556665543 44444 233566666666666 3442 46666677777777776666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.02  E-value=0.01  Score=44.25  Aligned_cols=71  Identities=24%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             cCCCCCCCEEeccCcc--CCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIK--LNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~--l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      -...++++.|-+.+|.  +.......|..++.|+.||+++|.--+..| ..++.+-+|+.|++++..+...|..
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccccchH
Confidence            3456678899888886  444434557889999999999988888888 4689999999999999999866553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.99  E-value=0.0081  Score=37.65  Aligned_cols=62  Identities=23%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      -+...+++++|.+-.  ...+..++.|..|.+++|+++..-| .--..+++|.+|.+.+|.+...
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhh
Confidence            356678888888774  3467889999999999999997766 2234468899999999988654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.84  E-value=0.0065  Score=39.04  Aligned_cols=63  Identities=29%  Similarity=0.461  Sum_probs=45.0

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCC--ccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n--~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+..++.+.+.+..++.  -..+..+++|+.|.++-|  .+.+..+. -...+|+|++++++.|+++-
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc
Confidence            34556666666666664  345777899999999999  44444432 23456999999999999986

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.83  E-value=0.0051  Score=41.19  Aligned_cols=68  Identities=28%  Similarity=0.365  Sum_probs=40.1

Q ss_pred             cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhc-CCCCCCCEEeccCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REF-DSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~-~~~~~L~~l~ls~N~l~~   75 (92)
                      +..++.|+.|++..|.++..    ....+..+++|+.+.++++.++..-..   +.+ ...|+|+++++++|.++.
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            44567777777777776642    223455666777777777776644221   011 225667777777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.0014  Score=43.09  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC----CCcchhh
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP----QGKQLKC   86 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~----~~~~l~~   86 (92)
                      +.+.+.|+.=++.+.++  .-..+++.|+.|.++-|.++..-|   +..+++|+.++|..|.|.++...    ..++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45666777777777752  345689999999999999997655   78899999999999999987553    3566666


Q ss_pred             HHh
Q 034530           87 YLI   89 (92)
Q Consensus        87 ~~~   89 (92)
                      +|+
T Consensus        93 LWL   95 (388)
T KOG2123|consen   93 LWL   95 (388)
T ss_pred             Hhh
Confidence            654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=94.67  E-value=0.032  Score=23.32  Aligned_cols=18  Identities=50%  Similarity=0.656  Sum_probs=13.3

Q ss_pred             CCCCCEEeccCCcCCCcC
Q 034530           60 FNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        60 ~~~L~~l~ls~N~l~~~~   77 (92)
                      +++|+.|+++.|+|+.+.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            357888888888887653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.62  E-value=0.082  Score=34.95  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhh----hhcCCCCcEEecCCCccCCccChhhc-------------CCCCCCCEEecc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSS----LTVFSSLRELHLRDTGFKGTFDVREF-------------DSFNNLEVLDLS   69 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~----~~~~~~L~~l~l~~n~l~~~~~~~~~-------------~~~~~L~~l~ls   69 (92)
                      .+-++|.|+..++|.|-+....|+.    ++.-+.+.+|.+.+|.+. +.....+             .+-|.|+++.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            4568899999999999998766654    456788999999888876 3322222             235789999999


Q ss_pred             CCcCCCcCCC
Q 034530           70 WNEIDNLVVP   79 (92)
Q Consensus        70 ~N~l~~~~~~   79 (92)
                      .|++.+.+..
T Consensus       166 rNRlengs~~  175 (388)
T COG5238         166 RNRLENGSKE  175 (388)
T ss_pred             cchhccCcHH
Confidence            9998877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.32  E-value=0.026  Score=41.15  Aligned_cols=42  Identities=36%  Similarity=0.409  Sum_probs=20.2

Q ss_pred             CCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           35 FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        35 ~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +|+|+.|.+.+=.+...--.....++|+|..||+|+.+++..
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence            555555555543333221112234455556666555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.03  E-value=0.018  Score=23.22  Aligned_cols=16  Identities=56%  Similarity=0.640  Sum_probs=9.9

Q ss_pred             CCCCEEeccCCcCCCc
Q 034530           61 NNLEVLDLSWNEIDNL   76 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~   76 (92)
                      ++|++|++++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            5678888888877543

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.85  E-value=0.064  Score=36.16  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .-++|+.+...+|++...    ....+...+.|+...+.+|.+...-.   ...+..++.|++||+..|-++.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            445666777777776642    12234445566666666665552211   1234556666666666665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.12  E-value=0.06  Score=35.97  Aligned_cols=43  Identities=19%  Similarity=0.279  Sum_probs=25.4

Q ss_pred             cCCCCcEEecCCCccCCccChh-hcCCCCCCCEEeccCCcCCCc
Q 034530           34 VFSSLRELHLRDTGFKGTFDVR-EFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        34 ~~~~L~~l~l~~n~l~~~~~~~-~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .++.++.+|+.+|++++..... .+.++|.|++|+++.|.+...
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~  112 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD  112 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence            4566666677777666543321 135566667777776666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.90  E-value=0.34  Score=27.06  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=26.0

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      ..+.+++.+.+..+ +.......|..+++++.+.+.. .+. .++...|..+++++.+++..+
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc
Confidence            34445556655553 4433334455555566666644 222 122234555666666666543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.01  E-value=0.12  Score=21.58  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=13.2

Q ss_pred             CCCEEeccCCcCCCcCC
Q 034530           62 NLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        62 ~L~~l~ls~N~l~~~~~   78 (92)
                      .|+.|++++|+++..|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            57788888888887765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.90  E-value=0.36  Score=26.93  Aligned_cols=68  Identities=12%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+.++.+++.+.+.. .+.......|..+++++.+.+..+ +.. ++...|.++++++.+.+.+ .+.....
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~-~~~~i~~   74 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN-NLKSIGD   74 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc-ccccccc
Confidence            355677889998874 566555667888989999999875 553 3445788888899999965 4444433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.89  E-value=0.17  Score=21.27  Aligned_cols=16  Identities=38%  Similarity=0.441  Sum_probs=12.4

Q ss_pred             CCCCEEeccCCcCCCc
Q 034530           61 NNLEVLDLSWNEIDNL   76 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~   76 (92)
                      +.|++|||++|.+...
T Consensus         2 ~~L~~LdL~~N~i~~~   17 (28)
T smart00368        2 PSLRELDLSNNKLGDE   17 (28)
T ss_pred             CccCEEECCCCCCCHH
Confidence            4688899999988643

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=90.22  E-value=0.23  Score=35.39  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=38.0

Q ss_pred             CCCCCCEEeccCccCCCCC--hhhhhcCCCCcEEecCCC--ccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           10 GLSKLKSLGLAGIKLNRSI--LSSLTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~--~~~~~~~~~L~~l~l~~n--~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +.+.+..+.+++|++....  ..--...++|+.|+|++|  .+........+++ ..|+.+-+.+|.+...
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT  285 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence            4667777888888877632  222345678888888887  3332222111222 2356666777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=0.24  Score=33.26  Aligned_cols=58  Identities=22%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             CCCCCCEEeccCc-cCCCCChhhhhcCCCCcEEecCCCccCCccCh--hhcCCCCCCCEEecc
Q 034530           10 GLSKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDTGFKGTFDV--REFDSFNNLEVLDLS   69 (92)
Q Consensus        10 ~l~~L~~l~ls~n-~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--~~~~~~~~L~~l~ls   69 (92)
                      .++++..||++.+ .+...+...+.+++.|+++.++++.  +..|.  -.+...|.|.+||+-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence            4667777777765 3443344455667777777666544  33332  124556677777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.10  E-value=1.1  Score=31.13  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=18.8

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD   45 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~   45 (92)
                      ..+.+++.|+++++.+... |   .-..+|+.|.+++
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsn   81 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIEN   81 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccC
Confidence            3456677777777766642 3   1123466666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=85.11  E-value=0.094  Score=35.10  Aligned_cols=66  Identities=29%  Similarity=0.326  Sum_probs=35.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCcc-ChhhcCCCCCCCEEeccCCcC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF-DVREFDSFNNLEVLDLSWNEI   73 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~~L~~l~ls~N~l   73 (92)
                      +..+.+|+.+.+.++++.+.+-..+.+=..|+.++++.+.--... ..--+.+++.|..|+++.+.+
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence            345566666666666666655555666666666666543211111 111245566666666666644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=84.81  E-value=1.9  Score=28.83  Aligned_cols=47  Identities=23%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             hhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCCcCC
Q 034530           32 LTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        32 ~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +.+|++++..+++.|-+....|.   +-+...+.|++|.+++|.+..+..
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG  137 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG  137 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence            44678888888888888766653   224667788888888887765544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.69  E-value=0.27  Score=30.91  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhc-CCCCCCCEEeccCC-cCCCc
Q 034530           14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF-DSFNNLEVLDLSWN-EIDNL   76 (92)
Q Consensus        14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~~~L~~l~ls~N-~l~~~   76 (92)
                      ++.++.++..+...--..+..+++++.+.+.++.--+..-.+-+ +-.++|+.|+++.| +|+..
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            34455555555543334444555555555544332221111111 12466777777755 45544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.10  E-value=0.99  Score=30.64  Aligned_cols=63  Identities=30%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             CCCCCEEeccCcc-CCCCChhhhh-cCCCCcEEecCCCc-cCCccChhhcCCCCCCCEEeccCCcC
Q 034530           11 LSKLKSLGLAGIK-LNRSILSSLT-VFSSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWNEI   73 (92)
Q Consensus        11 l~~L~~l~ls~n~-l~~~~~~~~~-~~~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N~l   73 (92)
                      +.+++.+++++.. ++...-..+. .+++|+.+.+.++. +++.--......+++|++++++.+..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555556655555 3432222222 25666666655554 33222112234456677776665533

>TIGR00864 PCC polycystin cation channel protein

Probab=80.44  E-value=1.6  Score=36.70  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=27.7

Q ss_pred             eccCccCCCCChhhhhcCCCCcEEecCCCccCCc
Q 034530           18 GLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT   51 (92)
Q Consensus        18 ~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~   51 (92)
                      +|++|+|+...+..|..+.+|+.|+|++|.+...
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD   34 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD   34 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence            5788999977677788889999999999887743

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 29/75 (38%)

Query: 2   IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 61
           + +F V   L  L  L ++      +        SSL  L +    F+  F    F    
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 62  NLEVLDLSWNEIDNL 76
           NL  LDLS  +++ L
Sbjct: 471 NLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 7   VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
              G + LK L L+   +  ++ S+      L  L  + +  K   +   F S  NL  L
Sbjct: 368 SDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 67  DLSWNEIDNL 76
           D+S       
Sbjct: 427 DISHTHTRVA 436

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           GLS L+ L      L       +    +L+EL++     +       F +  NLE LDLS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 70  WNEIDNL 76
            N+I ++
Sbjct: 158 SNKIQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
            LS L +L L G  +    L + +  SSL++L   +T    + +         L+ L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 70  WNEIDNLVVPQ 80
            N I +  +P+
Sbjct: 133 HNLIQSFKLPE 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           GLS LK L L+  K       S + F SL  L ++    +        ++  NL  LDLS
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 70  WNEIDNL 76
            ++I+  
Sbjct: 359 HDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            G   LK L      ++      L    +L  L+L          + +      L+VLD 
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDF 160

Query: 69  SWNEIDNL 76
             N I  L
Sbjct: 161 QNNAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           + LS L+SL L+  +       +      L  L L  T  K       F + + L+VL+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 69  SWNEIDNL 76
           S + +D  
Sbjct: 433 SHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
              +L +L L    L     ++L+   +L+ L    TG     D     +   LE L L 
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLG 137

Query: 70  WNEIDNLVVPQGKQLK 85
            N I ++ +P+G   +
Sbjct: 138 SNHISSIKLPKGFPTE 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 35.4 bits (82), Expect = 9e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
              S L+ L L    L+  + S L   S+L++L L    F+         +F +L  L +
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSI 332

Query: 69  SWNEIDNLVVPQ 80
             N     +   
Sbjct: 333 KGNTKRLELGTG 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 25/68 (36%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L  L  L ++      +        SSL  L +    F+  F    F    NL  LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 69  SWNEIDNL 76
           S  +++ L
Sbjct: 478 SQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           G + LK L L+   +  ++ S+      L  L  + +  K   +   F S  NL  LD+S
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 70  WNEIDNL 76
                  
Sbjct: 430 HTHTRVA 436

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
            LS L +L L G  +    L + +  SSL++L   +T      +         L+ L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVA 132

Query: 70  WNEIDNLVVPQ 80
            N I +  +P+
Sbjct: 133 HNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           GLS L+ L      L       +    +L+EL++     +       F +  NLE LDLS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 70  WNEIDNL 76
            N+I ++
Sbjct: 158 SNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L  L  L L+  +L +   ++    SSL+ L++    F    D   +   N+L+VLD 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDY 525

Query: 69  SWNEI 73
           S N I
Sbjct: 526 SLNHI 530

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           +G+ KL  + +A   +  +I   L    SL ELHL         D       NNL  L L
Sbjct: 168 QGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 69  SWNEIDNL 76
           S+N I  +
Sbjct: 224 SFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L KL+ L L+  +L + +   +    +L+EL + +           F+  N + V++L
Sbjct: 97  APLVKLERLYLSKNQL-KELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 69  SWNEIDNLVVPQG 81
             N + +  +  G
Sbjct: 153 GTNPLKSSGIENG 165

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 35.4 bits (82), Expect = 9e-04
 Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 6/78 (7%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK----GTF-DVREFDSFNNL 63
                L+ L L   KL   +   L     ++ ++L +          F          + 
Sbjct: 237 ANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 64  EVLDLSWNEIDNLVVPQG 81
             + L  N +    +   
Sbjct: 296 SGVSLFSNPVQYWEIQPS 313

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            G + LK L L+   +  ++ S+      L  L  + +  K   +   F S  NL  LD+
Sbjct: 75  FGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 69  SWNEIDNL 76
           S       
Sbjct: 134 SHTHTRVA 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 9   KGLSKLKSLGLAG---IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEV 65
             L  L  L ++          I + L+   SL  L +    F+  F    F    NL  
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLS---SLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 66  LDLSWNEIDNL 76
           LDLS  +++ L
Sbjct: 180 LDLSQCQLEQL 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
              L  L L+G     ++       S L  L L    F G   +        L+VLDLS+
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 71  NEI 73
           NE 
Sbjct: 353 NEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF-DVREFDSFNNLEVLDLS 69
           L+ L+SL L+   +N S+ S     +SL  L L      G    +    S + L+ L++S
Sbjct: 76  LTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 70  WNEID 74
            N +D
Sbjct: 135 SNTLD 139

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVF---SSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 67
           L+ L+ L L+   ++ + +    +      L+ L +      G     +     NLE LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLD 206

Query: 68  LSWN 71
           +S N
Sbjct: 207 VSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 11  LSKLKSLGLAGIKLNRSI-LSSLTVFSSLRELHLRDTGFKGTF--DVREFDSFNNLEVLD 67
            S LK L ++   L+    +S     +SL  L L      G         D    L+ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 68  LSWNEI 73
           +S N+I
Sbjct: 185 ISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 11  LSKLKSLGLAGIKLNRSI--LSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            + L SL L+   L+  +  L+SL   S L+ L++          V      N+LEVLDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 69  SWNEI 73
           S N I
Sbjct: 159 SANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
            S L+ L ++G KL+     +++  + L+ L++    F G           +L+ L L+ 
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAE 278

Query: 71  NEI 73
           N+ 
Sbjct: 279 NKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
            ++LK L ++  +    I        SL+ L L +  F G        + + L  LDLS 
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 71  NEI 73
           N  
Sbjct: 304 NHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 5   FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE 64
           +V+S G  +LK L ++G K++  +   ++   +L  L +    F            + L+
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQ 226

Query: 65  VLDLSWNEI 73
            LD+S N++
Sbjct: 227 HLDISGNKL 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           GL  L +L L G  +      S +  +SL  L   +T      +         L+ L+++
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVA 136

Query: 70  WNEIDNLVVP 79
            N I +  +P
Sbjct: 137 HNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
           G + L+ L L+       + ++      L+ L  + +  K   +   F S   L  LD+S
Sbjct: 374 GTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 70  WNEIDNL 76
           +      
Sbjct: 433 YTNTKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%)

Query: 2   IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 61
           + +F     L KL  L ++               +SL  L +    FK       F +  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 62  NLEVLDLSWNEIDNL 76
           NL  LDLS  +++ +
Sbjct: 474 NLTFLDLSKCQLEQI 488

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            GL+ L++L     KL       +    +L++L++             F +  NL  +DL
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 69  SWNEIDNL 76
           S+N I  +
Sbjct: 161 SYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
              + L  L L+  +L +           L+ L++         D   ++   +L  LD 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDC 528

Query: 69  SWNEIDNL 76
           S+N I+  
Sbjct: 529 SFNRIETS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
             S L  L L   K+++    + +    L  L L           +E+    N+  + LS
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 70  WNEIDNL 76
           +N+   L
Sbjct: 439 YNKYLQL 445

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG-TFDVREFDSFNNLEVLD 67
           +GL  +  + L+  K  +   +S  +  SL+ L LR    K        F    NL +LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 68  LSWNEIDNL 76
           LS N I N+
Sbjct: 487 LSNNNIANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
            L  LK L L   +L++    +    ++L ELHL     +       F    NL  LDLS
Sbjct: 71  KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLS 129

Query: 70  WNEI 73
            N +
Sbjct: 130 HNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 10  GLSKLKSLGLAGIKLNR--SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 67
            +  L+ L L  + L    S  S      +L  L L +       +    +    LE+LD
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILD 510

Query: 68  LSWNEIDNL 76
           L  N +  L
Sbjct: 511 LQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVF--SSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 67
            L  L+ L L+  K+       L +F  SSL++L L     K  F    F +   L  L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF 201

Query: 68  LSWNEIDNLVVP 79
           L+  ++   +  
Sbjct: 202 LNNVQLGPSLTE 213

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNN--LEVL 66
                L +L L+   L+ + L +     +L+EL L +   +      E D F N  L+ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKL 176

Query: 67  DLSWNEIDNL 76
           +LS N+I   
Sbjct: 177 ELSSNQIKEF 186

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           KGLS L  L L     +   +        L+ + L             F++  +L+ L+L
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNL 591

Query: 69  SWNEIDNL 76
             N I ++
Sbjct: 592 QKNLITSV 599

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L KL+ L ++   L   I  +L   SSL EL + D   +       F    N+  +++
Sbjct: 99  SPLRKLQKLYISKNHL-VEIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEM 154

Query: 69  SWNEIDNLVVPQG 81
             N ++N     G
Sbjct: 155 GGNPLENSGFEPG 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVF---SSLRELHLRDTGFKGTFDVREFDSFNNLEV 65
            GL+ L+ L L    L+ ++LS    F   +SL  L LRD   K       F +     V
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 66  LDLSWNEIDNL 76
           LDL++N++ ++
Sbjct: 159 LDLTFNKVKSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVF---SSLRELHLRDTGFKGTFDVREFDSFNNLEV 65
             L  L+ L +        I      F   SSL  L L    F    +   F+   NLEV
Sbjct: 51  SRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEV 107

Query: 66  LDLSWNEIDNLVVPQG 81
           L L+   +D  V+   
Sbjct: 108 LTLTQCNLDGAVLSGN 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L+KL +L L   ++  S +  L   + L+ L+L         D+R      NL+VL+L
Sbjct: 150 SRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLEL 204

Query: 69  SWNEIDNLVVPQGKQLK 85
              E  N  +     L 
Sbjct: 205 FSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 9  KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             ++     L    +      +    +S+ ++   ++  K    V+      N+  L L
Sbjct: 18 DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFL 72

Query: 69 SWNEIDNL 76
          + N++ ++
Sbjct: 73 NGNKLTDI 80

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           K L KLKSL L    +  S ++ L     L  L+L +       D+        L+ L L
Sbjct: 106 KDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSL 160

Query: 69  SWNEIDNL 76
             N+I ++
Sbjct: 161 EDNQISDI 168

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTV--FSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
           +GL  L  L L    L+ ++L         +L  L L     +  +    F   N+L+ +
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153

Query: 67  DLSWNEIDNL 76
           D S N+I  +
Sbjct: 154 DFSSNQIFLV 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 7  VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
          V + L+  + L L+   +     SS      L+ L L       T D   F +  NL +L
Sbjct: 19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 67 DLSWNEIDNL 76
          DL  ++I  L
Sbjct: 79 DLGSSKIYFL 88

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            GL+ L  L ++    + SIL+ +     +  + L         D+    +   L+ L++
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNI 166

Query: 69  SWNEIDNL 76
            ++ + + 
Sbjct: 167 QFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            GLS L+ L + G  +    + +L+  +SL  L +  +    +  + + ++   +  +DL
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDL 143

Query: 69  SWN 71
           S+N
Sbjct: 144 SYN 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
           K L +LK L ++      ++  +     +L  L +                   L  L+L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL 255

Query: 69  SWNEIDNL 76
           S+N I  +
Sbjct: 256 SYNPISTI 263

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSI-LSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 67
             +  L  L L  +K    I   +     +L+ L+L     K   D+        LE L+
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELE 224

Query: 68  LSWNEIDNL 76
           +S N    +
Sbjct: 225 MSGNHFPEI 233

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSI-LSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD 67
             +  L+ L L  +K    I   +    S+LR L+L     +   ++        L+ LD
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELD 213

Query: 68  LSWNEIDNL 76
           LS N +  +
Sbjct: 214 LSGNHLSAI 222

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L KL +L +   K+  + +S+L   ++LREL+L +       D+    +   +  L+L
Sbjct: 85  SNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNL 139

Query: 69  SWNEI 73
             N  
Sbjct: 140 GANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             LS+L SL L   +L    +  +   ++L  L L         D+R   S + ++  D 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADF 340

Query: 69  SWNEI 73
           +   I
Sbjct: 341 ANQVI 345

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 7   VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
            S  L +L+ L ++  KL    L   ++F  L  + +     K +     FD   +L+ +
Sbjct: 446 FSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKI 502

Query: 67  DLSWNEID 74
            L  N  D
Sbjct: 503 WLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVF---SSLRELHLRDTGFKG-TFDVREFDSFNNLE 64
           + L  L+ L L+   +    L +        SL+ L L     +          +  NL 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 65  VLDLSWNEIDNL 76
            LD+S N    +
Sbjct: 391 SLDISRNTFHPM 402

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 7  VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
          + +  ++ K   +    L +++ S      +++EL L            +   F  LE+L
Sbjct: 5  IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 67 DLSWNEIDNL 76
          +LS N +   
Sbjct: 64 NLSSNVLYET 73

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 8/75 (10%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 2   IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN 61
           +   V    L ++ +L    + +    +  +   ++L +++  +       D+    +  
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT---DITPLKNLT 90

Query: 62  NLEVLDLSWNEIDNL 76
            L  + ++ N+I ++
Sbjct: 91  KLVDILMNNNQIADI 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 7  VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
          + +  ++ K   +    L +++ S      +++EL L            +   F  LE+L
Sbjct: 5  IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 67 DLSWNEIDNL 76
          +LS N +   
Sbjct: 64 NLSSNVLYET 73

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 9   KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
             L +L+SL L   K+  + ++ L+  + L  L L D       D+        L+ L L
Sbjct: 131 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYL 185

Query: 69  SWNEIDNL 76
           S N I +L
Sbjct: 186 SKNHISDL 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 10  GLSKLKSLGLAGIKLNR---SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL 66
           GL +L +L L    L      +   L    +L+ L+L+D   +       F    NL  L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLA---ALQYLYLQDNALQ-ALPDDTFRDLGNLTHL 158

Query: 67  DLSWNEIDNL 76
            L  N I ++
Sbjct: 159 FLHGNRISSV 168

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 35.9 bits (82), Expect = 7e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
           L  +  L L+  +L R++  +L     L  L   D   +   +V    +   L+ L L  
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCN 517

Query: 71  NEIDNL 76
           N +   
Sbjct: 518 NRLQQS 523

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 9  KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68
            L+    +      +      +      +  L    TG      +      NNL  L+L
Sbjct: 16 PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLEL 70

Query: 69 SWNEIDNL 76
            N+I +L
Sbjct: 71 KDNQITDL 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.21
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.1
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.1
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.1
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.03
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.03
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.01
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.0
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.99
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.98
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.96
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.94
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.9
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.42
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.19

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=1.3e-12  Score=78.54  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      ++.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+ ..|.++++|++|++++|++++..+....
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~  123 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence            6778899999999999998878888889999999999999987766 4588889999999999999888776433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.35  E-value=5.4e-12  Score=77.23  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=46.5

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|++++.++..
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHH
Confidence            4556666666666666666555556666667777777776665555 35666667777777777776665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=4e-12  Score=76.57  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=58.4

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+ ..|..+++|++|++++|+++..++..+
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~  122 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAF  122 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhh
Confidence            56677888888888888887767778888888888888888886665 467888888888888888888776533

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=3.9e-12  Score=81.92  Aligned_cols=77  Identities=22%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             ccccCCCCCCCEEeccC-ccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530            5 FVVSKGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~-n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      ++.++.+.+|+.|++++ |.+.+..+..|..+++|+.|++++|++++..+ ..|.++++|+.|+|++|++++.++..+.
T Consensus        24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            34467788899999996 99998877889999999999999999998777 5789999999999999999998876443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=6.8e-12  Score=74.13  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      ++++.|++++|.+.+..|..+..+++|+.|++++|++++..+ ..|..+++|++|++++|++++.++..
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeCHHH
Confidence            567778888888877767777777888888888888775544 45677778888888888887776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.32  E-value=2.2e-12  Score=90.73  Aligned_cols=70  Identities=21%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.+++|+.+++++|+++|.+|..+..++.|+.|++++|+++|.+| ..++++++|+.||+++|++++..|.
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCCh
Confidence            344555555555555555555555555555555555555555555 2455555555555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=9.6e-12  Score=73.83  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.++.|++++|.+.+..|..+..+++|+.|++++|++++..+ ..|..+++|++|++++|++++.++.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCccceeCHH
Confidence            667888888888887767777778888888888888876544 4567778888888888888877665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.31  E-value=1.3e-11  Score=75.56  Aligned_cols=71  Identities=27%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+ ..|..+++|++|++++|++++.++.
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH
Confidence            3344444444444444443323333444445555555555444333 2344455555555555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.30  E-value=3.9e-12  Score=89.41  Aligned_cols=72  Identities=19%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.++.|+.|++++|.++|.+|..+..+++|+.|++++|+++|.+| ..+..++.|+++|+++|+++|..|.
T Consensus       651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCC
Confidence            57789999999999999999999999999999999999999999999 4799999999999999999998876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=1.2e-11  Score=75.70  Aligned_cols=74  Identities=20%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+++...+ ..|..+++|+.|++++|++++.++..+
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCHHHc
Confidence            46778899999999999998878888999999999999999996544 567889999999999999998877644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=2.1e-11  Score=72.04  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      ++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|+++++++|++++.++..
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~  119 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGI  119 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCHHH
Confidence            5667888888888888887655556778888888888888886555 45677888888888888888777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=75.79  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+ ..|..+++|++|++++|++++.++..+.
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDSFI  126 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred             hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence            36788999999999999998777789999999999999999997665 5688999999999999999998776443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=1.3e-11  Score=71.04  Aligned_cols=73  Identities=25%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ..++.+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+++......+..+++|+++++++|++++.++
T Consensus        58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            4566778888888888888876677777788888888888888864321357778888888888888887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.26  E-value=3.5e-11  Score=70.45  Aligned_cols=73  Identities=23%  Similarity=0.221  Sum_probs=60.0

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ..++.+++|+.+++++|.+.+..|..+..+++|+.+++++|.+++......+..+++|+++++++|.+++.++
T Consensus        65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            5677788899999999999887777777799999999999998875432468888999999999999888766

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=3.8e-11  Score=70.89  Aligned_cols=71  Identities=24%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+..+++|+.|++++|++++..+..+..+++|+.+++++|++++..+ ..|..+++|+++++++|.+....+
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence            46789999999999999998767678899999999999999997665 568899999999999999987654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.25  E-value=2.6e-11  Score=82.40  Aligned_cols=74  Identities=24%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .+..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+ ..|.++++|++||+++|++++.++...
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            46778999999999999999888889999999999999999998776 578999999999999999999988744

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.24  E-value=1.7e-11  Score=83.29  Aligned_cols=72  Identities=15%  Similarity=0.108  Sum_probs=47.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+ +.|.++++|++|++++|++++.++.
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~  142 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENF  142 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCCEEECCCCcCCCCChh
Confidence            35566677777777777766555556667777777777777664433 4566667777777777777666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=4.8e-11  Score=73.98  Aligned_cols=70  Identities=26%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.++.
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH
Confidence            344555555555555554433334555555555555555554333 3355555666666666666555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.23  E-value=5.8e-11  Score=71.64  Aligned_cols=69  Identities=23%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ..+++|+.+++++|.+.+..+..+..+++|+.+++++|++.+..+ ..+..+++|++|++++|++++.++
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH
Confidence            344444444444444444333334444455555555555443332 234445555555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.23  E-value=5.2e-11  Score=73.81  Aligned_cols=70  Identities=24%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.++
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCCCcCh
Confidence            3445555555555555555444444555555555555555553332 234444445555555444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.23  E-value=6.3e-11  Score=74.27  Aligned_cols=68  Identities=29%  Similarity=0.402  Sum_probs=27.0

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+++|+.+++++|.+.+..+..+..+++|+.+++++|++.+..+ ..+..+++|++|++++|++++.
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCcc
Confidence            3334444444444444443333333344444444444444443222 2233344444444444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=7.3e-11  Score=70.00  Aligned_cols=71  Identities=24%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.+++|+.|++++|++.+..+..+..+++|+.|++++|++.+..+ ..+..+++|+++++++|.+...+.
T Consensus        52 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            47789999999999999998766667899999999999999997655 468899999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.21  E-value=8.5e-11  Score=70.91  Aligned_cols=72  Identities=25%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      ++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.++..
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~  119 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPDGV  119 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCHhH
Confidence            5677888888888888887655567788888888888888886554 45778888888888888888877653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.21  E-value=4.6e-11  Score=73.43  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=16.7

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK   49 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~   49 (92)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            3444444444444443332233334444444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=4.6e-11  Score=71.69  Aligned_cols=71  Identities=21%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.+++++|++++..| ..+..+++|+++++++|.+++..+
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence            57789999999999999999877779999999999999999998877 468999999999999999987543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.18  E-value=1.4e-10  Score=72.76  Aligned_cols=69  Identities=23%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|++|++++|++++.++
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH
Confidence            344444444444444444333334444445555555554443333 234444555555555555554444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=2.1e-11  Score=73.25  Aligned_cols=66  Identities=17%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+++|+.+++++|.+.+..+..+..+++|+.+++++|. +.. ++  .+..+++|+.|++++|++++.
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCCCC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCcCh
Confidence            3344444444444444444334444444444444444444 332 22  244444455555555544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.17  E-value=1.3e-10  Score=71.42  Aligned_cols=73  Identities=19%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++. .+| ..+..+++|++|++++|++++.++...
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC-cccccCCCCCEEECCCCcCCccCHHHH
Confidence            3678899999999999999876666788999999999999999 455 357888999999999999998876533

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.16  E-value=1.4e-10  Score=77.20  Aligned_cols=76  Identities=21%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      ++.+..+++|+.|++++|.+.+..|..+..+++|+.+++++|++.+..+ ..|..+++|+.|++++|++++.++...
T Consensus       211 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHHh
Confidence            4456677788888888888888778888888899999999999887666 468888999999999999988877643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.15  E-value=1.1e-10  Score=77.47  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             cccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            4 KFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         4 ~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .++.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++...
T Consensus       199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhHh
Confidence            34456677788888888888887777788888888888888888887665 568888899999999999988877643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.15  E-value=1.3e-10  Score=76.89  Aligned_cols=71  Identities=23%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+..+ ..+..+++|++|++++|++++.++.
T Consensus       319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCccccCCHh
Confidence            4455556666666666555555555556666666666666655444 3455566666666666666665553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.14  E-value=2.1e-10  Score=72.74  Aligned_cols=69  Identities=25%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++
T Consensus        97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCH
Confidence            344555555555555554444445555555555555555554333 334445555555555555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=1.4e-10  Score=68.55  Aligned_cols=73  Identities=21%  Similarity=0.121  Sum_probs=45.8

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ..++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+....+...+..+++|+.+++++|.++..+.
T Consensus        58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            4556667777777777777754333346677777777777777543221246667777777777777765543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.14  E-value=2.7e-10  Score=68.51  Aligned_cols=69  Identities=17%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      ++++.|++++|.+. .+|..+..+++|+.|++++|.+++..+ ..|.++++|++|++++|++++.++..+.
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   99 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD   99 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC
Confidence            58999999999998 457889999999999999999997766 5799999999999999999999886443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.13  E-value=4.1e-11  Score=76.59  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+++|+++++++|.+.+.+|..+..+++|+.+++++|.+.+..| ..+..+++|++|++++|++++.
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~  164 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCc
Confidence            3445555555555555554445555555555555555555555444 2355555555555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.13  E-value=1.2e-10  Score=75.00  Aligned_cols=71  Identities=24%  Similarity=0.202  Sum_probs=36.6

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.+++|+.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+|. .+.++++|+.|++++|++.+..|.
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhccH
Confidence            33445555555555555554455555555555555555555555542 345555555555555555554444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.12  E-value=3.4e-10  Score=70.78  Aligned_cols=70  Identities=26%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+..+ ..|..+++|++|++++|++++.++.
T Consensus       130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHH
Confidence            344455555555555554333334455555555555555554333 2345555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=1.5e-10  Score=79.60  Aligned_cols=68  Identities=19%  Similarity=0.256  Sum_probs=39.3

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      +.++.+++|+.|++++|.+. .+|..+..+++|+.|++++|++++ +|  .++++++|+.|++++|++++..
T Consensus       457 p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSS
T ss_pred             cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCC
Confidence            33455556666666666666 345556666666666666666664 33  3555666666666666665553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.11  E-value=3.9e-10  Score=66.53  Aligned_cols=69  Identities=23%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      .++++.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|+.|++++|++++.++..
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCHHH
Confidence            4789999999999998766678899999999999999997655 46789999999999999999988764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.11  E-value=4.3e-10  Score=70.36  Aligned_cols=69  Identities=20%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|+.|++++|++++.++.
T Consensus       107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A          107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh
Confidence            34444444444444444433344445555555555555553322 2344555555555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.11  E-value=1.6e-10  Score=75.04  Aligned_cols=66  Identities=29%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+++|+.|++++|.+.+..+..+..+++|+.|++++|++....+ ..|..+++|+.|++++|++++.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEE
Confidence            44444444444444444433344444444444444444443322 2344444444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.10  E-value=4.4e-10  Score=71.16  Aligned_cols=72  Identities=25%  Similarity=0.297  Sum_probs=53.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..+ ..+..+++|+.+++++|++++..+.
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCHH
Confidence            45667777778888877777666677777788888888888776554 3567777888888888888776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.10  E-value=1e-10  Score=76.01  Aligned_cols=72  Identities=21%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.+..
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHH
Confidence            36677888888888888887656667778888888888888876555 4577777888888888887776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.10  E-value=3.7e-10  Score=70.91  Aligned_cols=65  Identities=26%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEE
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCccccc
Confidence            3344444444444443333333334444444444444433222 2233344444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.10  E-value=2.6e-10  Score=77.78  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +..+++|+.+++++|.+.+..|..|..+++|++|++++|.+.+..| +.|+++++|++|++++|++++.++
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~  121 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASLES  121 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSS
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCccccccc
Confidence            4455666666666666665555555566666666666666655444 345555566666666665555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.10  E-value=1.9e-10  Score=76.10  Aligned_cols=74  Identities=28%  Similarity=0.312  Sum_probs=62.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .++.+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++..+...
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcccccChhhc
Confidence            46778899999999999998878888899999999999999986655 568889999999999999988876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.08  E-value=7e-10  Score=69.67  Aligned_cols=71  Identities=24%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             cCCCCCCCEEeccCcc-CCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~-l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +..+++|+.+++++|. +....+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.++.
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh
Confidence            3445555555555554 444434445555555555555555554433 2355555666666666665555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.07  E-value=3.3e-10  Score=75.35  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+ ..+..+++|++|++++|++++.++.
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~  165 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY  165 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT
T ss_pred             HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeCHh
Confidence            45667777777777777777666677777777777777777775444 4577777777777777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.07  E-value=2.5e-10  Score=68.53  Aligned_cols=74  Identities=20%  Similarity=0.413  Sum_probs=64.7

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCc-CCCcC
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE-IDNLV   77 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~-l~~~~   77 (92)
                      ..++.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|+ ++..+
T Consensus        79 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           79 TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccH
Confidence            345678889999999999999998778889999999999999999997666 468899999999999998 77765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.07  E-value=1.4e-10  Score=74.05  Aligned_cols=72  Identities=15%  Similarity=0.296  Sum_probs=59.2

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCC-CCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFN-NLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~-~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|++.+..|. .+..++ +|+.+++++|++++..+.
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh
Confidence            466788899999999998888888888889999999999998877773 577777 888888888888866554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.06  E-value=1.2e-09  Score=69.28  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|+++..+..
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccChh
Confidence            47789999999999999998767678899999999999999996554 5678899999999999999988765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=7e-10  Score=76.15  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=45.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..|+++++|++|++++|.+++.++.
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~  165 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD  165 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChh
Confidence            34566666666666666666555556666666667766666664433 3456666667777766666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.05  E-value=3.8e-10  Score=77.03  Aligned_cols=68  Identities=15%  Similarity=0.060  Sum_probs=40.6

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+++|+++++++|.+.+..|..|..+++|+.+++++|++.+..| ..++++++|++|++++|++++.
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l  120 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSI  120 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCG
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccC
Confidence            4556666666666666665555556666666666666666665444 3455555666666666555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.05  E-value=5.8e-10  Score=73.94  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=55.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|+++..++.
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~  154 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIPSY  154 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEECTT
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCcccccCHH
Confidence            46677888888888888887766778888888888888888885544 4577788888888888888777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.05  E-value=8.8e-10  Score=71.89  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=45.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.+++|+.|++++|.+.+..|..+..+++|+.+++++|.+....+ ..+.++++|++|++++|++++.++.
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh
Confidence            34566666667777666666555556666667777777666664333 3356666677777776666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.05  E-value=5.9e-10  Score=69.70  Aligned_cols=69  Identities=16%  Similarity=0.146  Sum_probs=32.7

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      +..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++.+.+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~  116 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLE  116 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCST
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccC
Confidence            3444555555555555554433344455555555555555544333 23444444444444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.05  E-value=5.2e-10  Score=72.20  Aligned_cols=70  Identities=21%  Similarity=0.180  Sum_probs=51.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +..+++|+.+++++|.+.+..+..+..+++|+.+++++|++++..+ ..+.++++|++|++++|++++.+.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~  141 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE  141 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc
Confidence            5667778888888887777666667777788888888887775433 447777788888888887777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=7.1e-10  Score=76.21  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=63.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCcc-ChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF-DVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. | ..++.+++|+.|++++|++++.++.
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccH
Confidence            57789999999999999998 46 8999999999999999999876 6 4689999999999999999998775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.03  E-value=6.4e-10  Score=74.14  Aligned_cols=72  Identities=25%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+ ..|.++++|++|++++|++.+..+.
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~  122 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLDY  122 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTTSCCCEECTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCCCccccCChh
Confidence            34556666666666666666555566666666666666666664333 3455566666666666666555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.03  E-value=9.2e-10  Score=70.80  Aligned_cols=70  Identities=21%  Similarity=0.139  Sum_probs=45.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.+++|+.|++++|.+.+ +|+.+..+++|+.+++++|.+.+..| ..++.+++|+.|++++|++.+..+.
T Consensus       202 l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcch
Confidence            4556666666666666664 34456666777777777766666666 3466667777777777666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.02  E-value=5.5e-10  Score=64.15  Aligned_cols=68  Identities=25%  Similarity=0.378  Sum_probs=54.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .+..+++|+.+++++|.+.+.  ..+..+++|+.+++++|.+.+..| ..+..+++|+++++++|++++.+
T Consensus        37 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCEEECTTSCCCSHH
T ss_pred             HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCEEECCCCcCCChH
Confidence            346788889999999888875  567788889999999999887655 35666888999999999888853

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1.3e-09  Score=70.04  Aligned_cols=68  Identities=19%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .++.+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+ ..+..++ |+.|++++|.+...
T Consensus        51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCC
T ss_pred             HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCC
Confidence            47789999999999999999888889999999999999999997655 4566555 99999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.01  E-value=8.6e-10  Score=75.26  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .++.+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+..| ..+..+++|+++++++|+++..+..
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCHh
Confidence            35566777777777777777666667777777777777777776655 3577777777777777777766554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.01  E-value=6.4e-10  Score=76.34  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      .++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++.+....+.++
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  195 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  195 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence            46789999999999999997655557899999999999999998776 4688999999999999999987655444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.00  E-value=6.9e-10  Score=70.25  Aligned_cols=68  Identities=28%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             CCCCCCEEeccCccCCC-CChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+++|+.+++++|.+.+ ..|..+..+++|+.+++++|.+.+..+ ..+..+++|+.|++++|++++.++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccCh
Confidence            33444444444444433 233334444444444444444443333 234444555555555555544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.00  E-value=4.5e-10  Score=75.48  Aligned_cols=64  Identities=23%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++++.+++++|.+.+..|..+..+++|+.|++++|++.+..| +.|.++++|++|++++|++++.
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l   84 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKI   84 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeec
Confidence            344444444444444444444444444444444444444333 2344444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.00  E-value=3.4e-10  Score=66.85  Aligned_cols=70  Identities=10%  Similarity=0.097  Sum_probs=50.7

Q ss_pred             cccCCCC-CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            6 VVSKGLS-KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         6 ~~l~~l~-~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +.+..+. +|+.+++++|.+.+.  ..+..+++|+.+++++|++++..+ ..+..+++|++|++++|+++..+.
T Consensus        35 ~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           35 ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCCCCCEEECCCCcCCcchh
Confidence            3344444 788888888888764  467778888888888888885543 345778888888888888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.00  E-value=9.6e-10  Score=70.31  Aligned_cols=73  Identities=22%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      +.++.+++++|.+.+..+..+..+++|+.+++++|.+.+..| ..+..+++|++|++++|+++..+......++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEECCCCcCCccChhhccccc
Confidence            567888888888887666677788888888888888886655 4577788888888888888776655444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=73.90  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=39.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+ ..|.++++|++|++++|++++.++
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~  117 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLEN  117 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTT
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccccccCCC
Confidence            4555666666666666665545555566666666666666554443 345555555555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.99  E-value=1.4e-09  Score=75.21  Aligned_cols=71  Identities=21%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ++.+++|+.+++++|.+.+..|..+..+++|+.+++++|.++...+ ..|.++++|++|++++|++++.++.
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~  115 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKNN  115 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCCCEEECCCCccCccChh
Confidence            4455666666666666666555556666666666666666664333 3455566666666666666555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.99  E-value=6.9e-10  Score=75.47  Aligned_cols=65  Identities=25%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ++++.+++++|.+.+..+..+..+++|+.|++++|++++..| +.|.++++|++|++++|+++..+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp  116 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNIS  116 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccC
Confidence            344455555555544444444445555555555555444333 23444444444444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.99  E-value=4.2e-10  Score=65.82  Aligned_cols=67  Identities=25%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      +..+++|+.|++++|.+.+.  ..+..+++|+.+++++|++.+..| ..+..+++|++|++++|++++.+
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~  111 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGNKLKDIS  111 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSSSCCSSG
T ss_pred             HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCCccCcch
Confidence            36678888888888888875  567788889999999999887666 35666889999999999988865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.99  E-value=1.1e-09  Score=73.80  Aligned_cols=69  Identities=22%  Similarity=0.242  Sum_probs=48.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..++++++|++|++++|++++.
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSS
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCccccc
Confidence            35667777777777777776666667777777777777777776544 3467777777777777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.98  E-value=1.1e-09  Score=71.42  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      .++.+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.+....+.++
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~  189 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  189 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccc
Confidence            46788999999999999996544446889999999999999997666 4688899999999999999887655444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=73.09  Aligned_cols=72  Identities=24%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      +..+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+..+ ..+..+++|+.|++++|++++.++..
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeCHhH
Confidence            5567778888888887777666667777788888888888876655 46777888888888888888776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.97  E-value=1.5e-09  Score=67.83  Aligned_cols=67  Identities=24%  Similarity=0.306  Sum_probs=36.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      +..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCC
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccce
Confidence            4455666666666666655544455555555555555555554333 234455555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.97  E-value=2.2e-09  Score=68.71  Aligned_cols=72  Identities=28%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      .+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++. .+|. .+..+++|+.+++++|++++.++..
T Consensus       212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCccChhH
Confidence            5677889999999999999877778888999999999999998 4553 5788899999999999998887653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.97  E-value=8.3e-10  Score=74.62  Aligned_cols=68  Identities=25%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CCCCCCEEeccCccCC-CCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+++|+.+++++|.+. +.+|..+..+++|+.+++++|++++..| ..+..+++|+.+++++|++++.++
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCH
Confidence            3444444444444443 2334444444445555555554444333 234445555555555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.96  E-value=8.3e-10  Score=70.35  Aligned_cols=70  Identities=16%  Similarity=0.227  Sum_probs=35.3

Q ss_pred             CCCCCCCEEeccCccCCCC--Ch-hhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            9 KGLSKLKSLGLAGIKLNRS--IL-SSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~--~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +.+++|+.+++++|.+.+.  .+ ..+..+++|+.+++++|++.+..+...+..+++|++|++++|+++..+.
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence            4455555555555555521  11 1223455566666666666554432234445566666666666654443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.96  E-value=3.8e-09  Score=67.50  Aligned_cols=72  Identities=26%  Similarity=0.300  Sum_probs=57.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      .+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++. .+| ..+..+++|+++++++|++++.++..
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC-TTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC-hhhccCCCcCEEECCCCcCCccChhh
Confidence            5667888888888888888776667888888888888888888 445 25777888888888888888877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.96  E-value=1e-09  Score=70.38  Aligned_cols=71  Identities=27%  Similarity=0.291  Sum_probs=55.2

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ++.+..+++|+.+++++|.+.+.  +.+..+++|+.+++++|++.+..+ ..+..+++|+.+++++|++++.++
T Consensus       258 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          258 INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC
Confidence            45567778888888888888764  357778888888888888886655 457788888888888888888766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.96  E-value=9.5e-10  Score=70.45  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.++.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+.++++|++|++++|+++..+..
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~  120 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKNHLVEIPPN  120 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECCCCcCCccCcc
Confidence            345555666655555444455555566666666655554433 3455555555555555555554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.94  E-value=7.1e-10  Score=78.02  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=27.3

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+| ..++++++|++|+|++|.++.+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~l  308 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP-AELGSCFQLKYFYFFDNMVTTL  308 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC-SSGGGGTTCSEEECCSSCCCCC
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC-hhhcCCCCCCEEECCCCCCCcc
Confidence            344444444444444 33444444444444444444444 223 1244444444444444444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.94  E-value=2.1e-09  Score=74.44  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEec------CCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHL------RDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ   83 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l------~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~   83 (92)
                      .+++|+.|++++|.+.+ +|..+..+++|+.+++      ++|++.+.+| ..+..+++|+.|++++|+++.++....+.
T Consensus       511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~  588 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKVNEKITPN  588 (636)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCSCCCTT
T ss_pred             cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCCccCHhHhCc
Confidence            67888888888888887 6777778888888888      4566777777 35777888888888888886666544444


Q ss_pred             hhh
Q 034530           84 LKC   86 (92)
Q Consensus        84 l~~   86 (92)
                      |+.
T Consensus       589 L~~  591 (636)
T 4eco_A          589 ISV  591 (636)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.93  E-value=2.1e-09  Score=68.13  Aligned_cols=65  Identities=26%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+..+++|+.|++++|.+.+.  +.+..+++|+.|++++|++++. +  .+..+++|+.|++++|++++.
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCC
T ss_pred             hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h--hhccCCCCCEEEccCCccccc
Confidence            344555555555555555542  2344445555555555554432 1  244444444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.93  E-value=1.3e-09  Score=74.44  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             cCCCCCCCEEeccCccCCCC---ChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS---ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~---~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ++.+++|+.+++++|.+.+.   .+..+..+++|+.+++++|.+.+..| ..+..+++|+.+++++|++++..+
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCccCcCCh
Confidence            34445555555555554431   11234444445555555554444333 234444444444444444444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.92  E-value=1.2e-09  Score=73.40  Aligned_cols=66  Identities=18%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC--ccChhhcCCCCCCCEEeccCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG--TFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+  ..| ..+..+++|++|++++|++.+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCc
Confidence            445555555555555555455555555555555555555553  122 234455555555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.92  E-value=6.9e-10  Score=78.08  Aligned_cols=72  Identities=25%  Similarity=0.277  Sum_probs=63.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      .++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|. .|+.+++|++|+|++|.+++.++...
T Consensus       265 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          265 EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChHHH
Confidence            4678999999999999999 56989999999999999999998 5563 59999999999999999998877643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.91  E-value=2.4e-09  Score=74.00  Aligned_cols=70  Identities=27%  Similarity=0.315  Sum_probs=40.5

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +.+++|+.+++++|.+....+..+..+++|+++++++|.+.+..+ ..++++++|++|++++|.+++.++.
T Consensus        70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCch
Confidence            345566666666666665433345666666666666666654443 3455566666666666666555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.90  E-value=1.3e-09  Score=66.96  Aligned_cols=69  Identities=10%  Similarity=0.077  Sum_probs=42.4

Q ss_pred             cCCCCCCCEEeccCcc-CCCCChhhhhcCCCCcEEecCC-CccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            8 SKGLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~-l~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ++.+++|+.+++++|. ++...+..+..+++|+.+++++ |.++...+ ..|.++++|+++++++|++++.+
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~lp  121 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKMFP  121 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCSCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCcccc
Confidence            4556666667776665 6554444566666666666666 66664433 34666666666666666666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.90  E-value=2.8e-09  Score=67.57  Aligned_cols=67  Identities=24%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+.+. +  .+..+++|++|++++|++++.
T Consensus        61 ~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~L~~n~i~~~  127 (291)
T 1h6t_A           61 VQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S--SLKDLKKLKSLSLEHNGISDI  127 (291)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G--GGTTCTTCCEEECTTSCCCCC
T ss_pred             ChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h--hhccCCCCCEEECCCCcCCCC
Confidence            3345556666666666666665422  55566666666666665542 2  255555555555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.90  E-value=3.1e-09  Score=68.11  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCC
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~   74 (92)
                      ..++.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..|   +..+++|+.+++++|.++
T Consensus       278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             CCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            345567889999999999999998888889999999999999999997655   777999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.89  E-value=2.1e-09  Score=67.33  Aligned_cols=64  Identities=23%  Similarity=0.202  Sum_probs=32.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+..+++|+.|++++|.+.+..+  +..+++|+.+++++|++++..+   +.. ++|+.|++++|++++.
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~  121 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-ACLSRLFLDNNELRDT  121 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-SSCCEEECCSSCCSBS
T ss_pred             HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-CcccEEEccCCccCCC
Confidence            34445555555555555554322  5555555555555555554222   222 5555555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.88  E-value=4e-09  Score=71.14  Aligned_cols=72  Identities=22%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCc-cChhhcCCCCCCCEEeccCCc-CCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT-FDVREFDSFNNLEVLDLSWNE-IDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~~~L~~l~ls~N~-l~~~~~~   79 (92)
                      .++.+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+. .+ ..++++++|++|++++|+ +...++.
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~  142 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRI  142 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCCccEEECCCCccccccCHh
Confidence            467889999999999999988777799999999999999999863 33 357888899999998887 4444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.88  E-value=3.5e-09  Score=67.52  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +.+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+. +  .+..+++|++|++++|++++.
T Consensus        57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~  122 (308)
T 1h6u_A           57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S--AIAGLQSIKTLDLTSTQITDV  122 (308)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G--GGTTCTTCCEEECTTSCCCCC
T ss_pred             hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h--hhcCCCCCCEEECCCCCCCCc
Confidence            344455566666666666554322  55555555555555555542 2  244555555555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=4.7e-09  Score=75.36  Aligned_cols=76  Identities=14%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCC------CccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD------TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ   83 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~------n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~   83 (92)
                      .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |++.+.+| ..+.++++|+.|++++|++..++....+.
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~  828 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDEKLTPQ  828 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCSCCCSS
T ss_pred             cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCCCccCHhhcCC
Confidence            67788888888888876 577777788888888765      66666676 35777888888888888886665554444


Q ss_pred             hhhH
Q 034530           84 LKCY   87 (92)
Q Consensus        84 l~~~   87 (92)
                      |+.+
T Consensus       829 L~~L  832 (876)
T 4ecn_A          829 LYIL  832 (876)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            4433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.87  E-value=4.1e-09  Score=72.99  Aligned_cols=65  Identities=26%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+..+++|+.|++++|.+.+.  +.+..+++|+.|++++|.+.+. +  .+..+++|+.|+|++|++.+.
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCC
T ss_pred             hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCc
Confidence            344444455555555544432  2344444444444444444432 1  233444444444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.87  E-value=5.4e-09  Score=67.41  Aligned_cols=73  Identities=21%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC-cCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN-EIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N-~l~~~~~~   79 (92)
                      .++.+++|+.+++++|.+.+..+..+..+++|+.+++++|++....+...+..+++|+++++++| .+++.++.
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  168 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK  168 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence            46788999999999999997655558889999999999999985433135778889999999888 46666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.87  E-value=2.7e-09  Score=73.89  Aligned_cols=68  Identities=10%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             ccCCCCCCCEEeccCccCCCC-----------------Chhhhh--cCCCCcEEecCCCccCCccChhhcCCCCCCCEEe
Q 034530            7 VSKGLSKLKSLGLAGIKLNRS-----------------ILSSLT--VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD   67 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~-----------------~~~~~~--~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~   67 (92)
                      .++.+++|+.|++++|.+++.                 +|..+.  .+++|+.|++++|.+.+.+| ..++++++|++|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~  279 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence            356677777777777777774                 677766  77777777777777777777 4577777777777


Q ss_pred             ccCCc-CCC
Q 034530           68 LSWNE-IDN   75 (92)
Q Consensus        68 ls~N~-l~~   75 (92)
                      +++|+ +++
T Consensus       280 Ls~n~~l~~  288 (636)
T 4eco_A          280 VACNRGISG  288 (636)
T ss_dssp             CTTCTTSCH
T ss_pred             CcCCCCCcc
Confidence            77776 665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.87  E-value=2.7e-09  Score=72.54  Aligned_cols=67  Identities=22%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccC-hhhcCCCCCCCEEeccCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD-VREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      +.+++|+.+++++|.+.+..|..+..+++|+.+++++|++++..+ ...+..+++|+.+++++|++++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            345555555555555555445555555555555555555553211 0124445555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.86  E-value=3.8e-09  Score=67.28  Aligned_cols=65  Identities=20%  Similarity=0.121  Sum_probs=41.0

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcC-----CCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVF-----SSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~-----~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..+++|+.+++++|.+.+. |..+..+     ++|+++++++|++.+..+ ..++.+++|++|++++|++.+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCc
Confidence            5566667777777766665 5555544     666666666666665554 346666666777776666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.86  E-value=6.3e-09  Score=65.10  Aligned_cols=63  Identities=25%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +..+++|+.|++++|++.+. +. +.. ++|+.|++++|++++. +  .+..+++|+.|++++|++++.
T Consensus        81 l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G--GGTTCTTCCEEECTTSCCCBC
T ss_pred             hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h--hhcCcccccEEECCCCcCCCC
Confidence            44455555555555555542 21 111 4555555555555532 2  244555555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.85  E-value=1.7e-08  Score=64.33  Aligned_cols=18  Identities=22%  Similarity=0.344  Sum_probs=7.4

Q ss_pred             CCCCCCCEEeccCCcCCC
Q 034530           58 DSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        58 ~~~~~L~~l~ls~N~l~~   75 (92)
                      ..+++|+.|++++|++++
T Consensus       170 ~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCCEEECCCCccCc
Confidence            334444444444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.84  E-value=5e-09  Score=74.41  Aligned_cols=72  Identities=26%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh-hhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV-REFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. ..+.++++|++|++++|.+++..+
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence            466778888888888888877777777888888888888887765442 226777777777777777776644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.83  E-value=2.4e-09  Score=65.71  Aligned_cols=78  Identities=17%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             cCCCCCCC-EEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhcCCC-CCCCEEeccCCcCCCcCCCCCcch
Q 034530            8 SKGLSKLK-SLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSF-NNLEVLDLSWNEIDNLVVPQGKQL   84 (92)
Q Consensus         8 l~~l~~L~-~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~-~~L~~l~ls~N~l~~~~~~~~~~l   84 (92)
                      +..+++|+ .+++++|.+... |......++|+.+++++|+ ++...+ ..|..+ ++|+.+++++|++++.++.....+
T Consensus       151 ~~~l~~L~~~L~l~~n~l~~i-~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L  228 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNNGFTSV-QGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSKGLEHL  228 (239)
T ss_dssp             TTTTBSSEEEEECCSCCCCEE-CTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred             ccchhcceeEEEcCCCCCccc-CHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChhHhccC
Confidence            45566666 777777776633 3332222667777777774 664333 456667 777777777777777766655555


Q ss_pred             hhH
Q 034530           85 KCY   87 (92)
Q Consensus        85 ~~~   87 (92)
                      +.+
T Consensus       229 ~~L  231 (239)
T 2xwt_C          229 KEL  231 (239)
T ss_dssp             SEE
T ss_pred             cee
Confidence            433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.83  E-value=6.3e-09  Score=72.06  Aligned_cols=68  Identities=25%  Similarity=0.278  Sum_probs=45.5

Q ss_pred             cccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            4 KFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         4 ~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .++.+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+. +  .+..+++|+.|++++|++.+.
T Consensus        57 ~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           57 SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S--SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             CCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T--TSTTCTTCCEEECTTSCCCCC
T ss_pred             CChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h--hhccCCCCCEEEecCCCCCCC
Confidence            34456667777778888777776433  66777777777777777652 2  366666677777776666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.83  E-value=2.3e-09  Score=68.22  Aligned_cols=68  Identities=13%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             CCCCCCEEeccCccCCCCChh----hhhcCCCCcEEecCCCccCCccChhhcCCC---CCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILS----SLTVFSSLRELHLRDTGFKGTFDVREFDSF---NNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~----~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~---~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+++|+.|++++|.++.. +.    .+..+++|+.|++++|++.+..|. .+..+   ++|++|++++|+++..+..
T Consensus       195 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred             cCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhhh
Confidence            444455555555554421 11    124456666666666666655431 23333   4566666666666554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.81  E-value=2e-09  Score=72.57  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +.+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..+   ...+++|+.|++++|.+++.
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCC
Confidence            3345555555555555554444443 34444444444444443321   22244444444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.80  E-value=8.6e-09  Score=73.24  Aligned_cols=71  Identities=23%  Similarity=0.233  Sum_probs=45.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      +..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+.++.
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEEECCCCCCCccChh
Confidence            4556666666666666666556566666666677766666665544 3466666666666666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.78  E-value=3.2e-09  Score=71.61  Aligned_cols=69  Identities=22%  Similarity=0.079  Sum_probs=56.1

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcC-CCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD-SFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+. .+. .+++|++|++++|.+++.++.
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~~~~  187 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVKGQ  187 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEECC
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCcccccccc
Confidence            467788888888888887777788889999999999999987664 443 688999999999999887554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.77  E-value=3.3e-09  Score=67.46  Aligned_cols=76  Identities=22%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcC---CCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC-CCCcc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVF---SSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV-PQGKQ   83 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~---~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~-~~~~~   83 (92)
                      ++.+++|+.|++++|.+.+..|..+..+   ++|+.+++++|+++ .+|. .+  .++|+.|++++|++++.+. ...+.
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~l~~~~~~~~l~~  295 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNRLNRAPQPDELPE  295 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCCCCSCCCTTSCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCcCCCCchhhhCCC
Confidence            3567999999999999998877777766   69999999999999 4553 34  3799999999999998643 23445


Q ss_pred             hhhH
Q 034530           84 LKCY   87 (92)
Q Consensus        84 l~~~   87 (92)
                      ++.+
T Consensus       296 L~~L  299 (310)
T 4glp_A          296 VDNL  299 (310)
T ss_dssp             CSCE
T ss_pred             ccEE
Confidence            5443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.76  E-value=2.3e-08  Score=67.03  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=28.9

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.+++|+.+++++|.+++. |  +..+++|+.+++++|.+++. +   ++++++|++|++++|++++.
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECCSSCCSCC
T ss_pred             hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCcCCEEECCCCcCCee
Confidence            34444555555555554442 1  44444455555555544432 1   34444455555555544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=2.9e-08  Score=62.79  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             CCCCCCEEeccCccCCCC--ChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRS--ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+++|+.|++++|++.+.  ++..+..+++|+.|++++|++++....+.+..+ +|+.|++++|.+.+..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence            578999999999999983  456677899999999999999976333334444 89999999999987443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.74  E-value=3.9e-08  Score=65.60  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ++.+..+++|+.+++++|.+.+..+  +..+++|+.+++++|++.+..+   +.++++|++|++++|++++.++
T Consensus        61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~  129 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP  129 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH
Confidence            4445667778888888888776533  7777778888887777775433   6677777777777777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.74  E-value=5.3e-09  Score=66.75  Aligned_cols=66  Identities=21%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             CCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+++|+.+++++|.+.+..+..+. .+++|+.+++++|.+++..+   ...+++|+.|++++|++++.++
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~  208 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP  208 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG
T ss_pred             ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchh
Confidence            345555555555555544343332 45555555555555554321   2235556666666666655544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.72  E-value=3.4e-08  Score=66.14  Aligned_cols=70  Identities=19%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcch
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQL   84 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l   84 (92)
                      ++.+++|+.+++++|.+.+.   .+..+++|+.+++++|++++ +|   +..+++|+.+++++|++++.++...+.+
T Consensus       187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence            33444555555555555543   25556666666666666665 33   5556667777777777766655444433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=1.1e-08  Score=73.37  Aligned_cols=67  Identities=16%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             cCCCCCCCEEeccCccCCC-----------------CChhhhh--cCCCCcEEecCCCccCCccChhhcCCCCCCCEEec
Q 034530            8 SKGLSKLKSLGLAGIKLNR-----------------SILSSLT--VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL   68 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~-----------------~~~~~~~--~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~l   68 (92)
                      ++.+++|+.|++++|.+++                 .+|..+.  .+++|+.|++++|.+.+.+| ..++++++|+.|++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence            5556666666666666665                 2555544  66666666666666666666 34666666666666


Q ss_pred             cCCc-CCC
Q 034530           69 SWNE-IDN   75 (92)
Q Consensus        69 s~N~-l~~   75 (92)
                      ++|+ +++
T Consensus       523 s~N~~lsg  530 (876)
T 4ecn_A          523 ACNRGISA  530 (876)
T ss_dssp             TTCTTSCH
T ss_pred             cCCCCccc
Confidence            6665 554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.70  E-value=4.7e-08  Score=62.34  Aligned_cols=62  Identities=24%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~   74 (92)
                      .+++|+.+++++|.+.+. |+.+..+++|+.+++++|++.. +| ..+..+++|+.+++++|++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~-~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IE-KALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-EC-TTCCCCTTCCEEECTTCCCB
T ss_pred             ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hh-hHhhcCCCCCEEEccCCCcc
Confidence            355555555555555543 3335555556666666665553 33 13555556666666666555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.69  E-value=7e-08  Score=64.36  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      ++.+++|+.+++++|.+.+..|  +..+++|+.+++++|.+.+. +  .+..+++|+.+++++|++++..+
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch
Confidence            3344455555555555544322  44455555555555555543 1  34555555555555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.56  E-value=6e-08  Score=62.68  Aligned_cols=67  Identities=18%  Similarity=0.221  Sum_probs=33.6

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh-------------------------hhcCCCCCCCEEe
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV-------------------------REFDSFNNLEVLD   67 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-------------------------~~~~~~~~L~~l~   67 (92)
                      +++.|++++|+++...+..|..+++|+.|++++|++.+.++.                         +.|..+++|++++
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            455555555555533233345555555555555554433332                         3345555566666


Q ss_pred             ccCCcCCCcCCC
Q 034530           68 LSWNEIDNLVVP   79 (92)
Q Consensus        68 ls~N~l~~~~~~   79 (92)
                      +++|++...++.
T Consensus       111 l~~n~l~~~~~~  122 (350)
T 4ay9_X          111 ISNTGIKHLPDV  122 (350)
T ss_dssp             EEEECCSSCCCC
T ss_pred             ccccccccCCch
Confidence            666666555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=2.3e-09  Score=64.29  Aligned_cols=65  Identities=29%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +..+++|+.+++++|.+.+ +| .+..+++|+.+++++|.+.. +| ..+..+++|+.|++++|++++.
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~-~~~~~~~~L~~L~L~~N~l~~l  108 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IE-NLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CS-SHHHHHHHCSEEEEEEEECCCH
T ss_pred             HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-cc-chhhcCCcCCEEECcCCcCCcC
Confidence            4456667777777777665 34 56666667777777766663 33 1344445666666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.47  E-value=3.2e-07  Score=63.32  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      +++|+.|++++|.+++ +|. +..  +|+.|++++|.+++ +|.    .+++|+.|++++|++++
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc
Confidence            3444444444444443 232 221  44444444444443 221    23444444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.46  E-value=7.1e-07  Score=59.74  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=32.8

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ++.+++|+.+++++|.+.+ +|..   ..+|+.+++++|++.+ +|  .++++++|+.+++++|++++.+
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC
Confidence            4445555555555555553 2221   1345555555555554 23  2556666666666666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.45  E-value=1.5e-07  Score=60.00  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             CCCCCCEEeccCccCCCC-ChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530           10 GLSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      .+++|+.+++++|.+.+. .+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCC
Confidence            445555566655555543 44445555555555555555554433 23445555555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.41  E-value=9.9e-08  Score=60.80  Aligned_cols=67  Identities=31%  Similarity=0.522  Sum_probs=44.8

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCC-ccCCc-cChhhcCCCCCCCEEeccCC-cCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT-GFKGT-FDVREFDSFNNLEVLDLSWN-EIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n-~l~~~-~~~~~~~~~~~L~~l~ls~N-~l~~   75 (92)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+++. .+ ..+..+++|++|++++| .+++
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcCh
Confidence            456777777777777777666666777777777777777 55542 22 23556677777777777 6654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.40  E-value=1.4e-07  Score=60.98  Aligned_cols=73  Identities=22%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCC-CccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchhh
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKC   86 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~~   86 (92)
                      ..++.+++++|.++.. +.......+++.+++.+ |.+. .+|.+.|..+++|+.||+++|+++..++.....++.
T Consensus       154 ~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~  227 (350)
T 4ay9_X          154 FESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  227 (350)
T ss_dssp             SSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             hhhhhhccccccccCC-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence            4578899999999864 44455567889999975 5555 556567899999999999999999998875555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.39  E-value=1.6e-07  Score=61.23  Aligned_cols=68  Identities=26%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             ccCCCCCCCEEeccCccCC----CCChhhhhcCCCCcEEecCCCccCCc----cChhhc--CCCCCCCEEeccCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLN----RSILSSLTVFSSLRELHLRDTGFKGT----FDVREF--DSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~----~~~~~~~~~~~~L~~l~l~~n~l~~~----~~~~~~--~~~~~L~~l~ls~N~l~~   75 (92)
                      .+..+++|+.|++++|.+.    ..+|..+..+++|+.|++++|.+++.    ++ ..+  +.+++|++|++++|.+++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCH
Confidence            3445556666666666653    23344455555555555555555543    11 122  224555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.37  E-value=1.1e-07  Score=61.55  Aligned_cols=69  Identities=20%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             CCCC-CCCEEeccCccCCCCChhhhhcC-----CCCcEEecCCCccCCccChh---hcCCC-CCCCEEeccCCcCCCcC
Q 034530            9 KGLS-KLKSLGLAGIKLNRSILSSLTVF-----SSLRELHLRDTGFKGTFDVR---EFDSF-NNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         9 ~~l~-~L~~l~ls~n~l~~~~~~~~~~~-----~~L~~l~l~~n~l~~~~~~~---~~~~~-~~L~~l~ls~N~l~~~~   77 (92)
                      ..++ +|+.|++++|.+.+..+..+..+     ++|+.|++++|.+++..+..   .+... ++|++|++++|++++..
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            3444 55555555555555444444432     55555555555555433210   12222 45555555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.37  E-value=7.9e-07  Score=61.35  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|.  +.  ++|+.|++++|+++.++.
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCchhh
Confidence            3444555555555443 222   33455555555555554 331  22  455555555555554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.37  E-value=3.5e-07  Score=63.63  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=36.8

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +++|+.|++++|.+.. +|.   .+++|+.|++++|+++ .+| ..+.++++|+.+++++|.+++..+
T Consensus       240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp-~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC-GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC-HHHhhccccCEEEecCCCCCCcCH
Confidence            4555555666665553 232   4556666667666666 344 246667777777777777665443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.37  E-value=1.5e-07  Score=61.35  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             cCCCCCCCEEeccCccCCCC----Chhhhhc--CCCCcEEecCCCccCC----ccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS----ILSSLTV--FSSLRELHLRDTGFKG----TFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~--~~~L~~l~l~~n~l~~----~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      +..+++|+.|++++|.+.+.    ++..+..  +++|+.|++++|.+++    .++...+.++++|++|++++|++++..
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            34555666666666665543    2333322  5666666666666664    233211144566666666666665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.36  E-value=1.8e-06  Score=57.84  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=35.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .++.+++|+.+++++|.+.+. |..   .++|+.+++++|.+. .+|  .++.+++|+++++++|++++.+
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCccc
Confidence            345555566666666655541 211   135555555555555 334  2556666677777666666644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.33  E-value=2.9e-07  Score=59.63  Aligned_cols=69  Identities=19%  Similarity=0.082  Sum_probs=56.0

Q ss_pred             CCCCCCEEeccCccCCCCCh----hhhhcCC-CCcEEecCCCccCCccChhhcCCC-----CCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSIL----SSLTVFS-SLRELHLRDTGFKGTFDVREFDSF-----NNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~----~~~~~~~-~L~~l~l~~n~l~~~~~~~~~~~~-----~~L~~l~ls~N~l~~~~~~   79 (92)
                      ..++|+.+++++|.+.+..+    ..+..++ +|+.+++++|.+.+..+ ..+..+     ++|++|++++|++++..+.
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            34559999999999998766    6677888 89999999999997654 345443     8999999999999876543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.31  E-value=2.8e-08  Score=59.54  Aligned_cols=69  Identities=16%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChh------hhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILS------SLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+.....++.++++.+.+.+..|.      .+..+++|+.+++++|.+.+ +|  .+..+++|+.|++++|+++..+.
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~   87 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIEN   87 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSS
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccc
Confidence            344566777778888888877665      89999999999999999997 55  57889999999999999997654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.14  E-value=2.9e-07  Score=60.80  Aligned_cols=66  Identities=24%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhc-----CCCCcEEecCCCccCC----ccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTV-----FSSLRELHLRDTGFKG----TFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~-----~~~L~~l~l~~n~l~~----~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+++|+.+++++|.+.+..+..+..     .++|+.+++++|.+++    .++ ..+..+++|+.+++++|++++.
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCCCCCEEECCSSSCCHH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHHhCCCccEEECCCCCCCHH
Confidence            3456666666666655433333322     4566666666666664    333 2345566777777777766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.12  E-value=6.8e-06  Score=57.21  Aligned_cols=16  Identities=31%  Similarity=0.408  Sum_probs=7.4

Q ss_pred             CCCCEEeccCCcCCCc
Q 034530           61 NNLEVLDLSWNEIDNL   76 (92)
Q Consensus        61 ~~L~~l~ls~N~l~~~   76 (92)
                      ++|++|++++|++++.
T Consensus       141 ~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          141 PGLQELSVSDNQLASL  156 (622)
T ss_dssp             TTCCEEECCSSCCSCC
T ss_pred             CCCCEEECcCCcCCCc
Confidence            4444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=6.1e-06  Score=52.76  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCC-EEeccC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE-VLDLSW   70 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~-~l~ls~   70 (92)
                      +++|+.+++++|.+....+..|..+.+|+.+++++| +. .++..+|.++++|+ .+++++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc
Confidence            445555555555544433344445555555555444 32 12223344444444 444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.04  E-value=1.8e-06  Score=58.61  Aligned_cols=68  Identities=10%  Similarity=0.017  Sum_probs=50.4

Q ss_pred             CCCCCCEEeccCccCCCC-ChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530           10 GLSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++......+..+++|+.|++++|+++...
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence            377888888888888763 34445678899999999998765433233456889999999999987653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=1.3e-05  Score=51.25  Aligned_cols=75  Identities=15%  Similarity=0.032  Sum_probs=61.9

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCc-EEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcch
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLR-ELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQL   84 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l   84 (92)
                      .+.++.+|+.++++.| +....+..|..+.+|+ .+++.+ .+.. ++..+|.++++|+.++++.|.++.+....+..+
T Consensus       245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            4667899999999998 7766677899999999 999988 6663 444689999999999999999999988755443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.89  E-value=5.6e-06  Score=54.68  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             CCCCCCEEeccCccCCCCChhhhh-cCC----CCcEEecCCCccCCc----cChhhcCCCCCCCEEeccCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLT-VFS----SLRELHLRDTGFKGT----FDVREFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~----~L~~l~l~~n~l~~~----~~~~~~~~~~~L~~l~ls~N~l~   74 (92)
                      .+++|+.+++++|.+....+..+. .++    +|+.+++++|.+...    ++ ..+..+++|++|++++|.++
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCH
T ss_pred             hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCc
Confidence            445555555555555432222222 233    455555555555531    12 23455555555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.86  E-value=4.7e-06  Score=54.60  Aligned_cols=66  Identities=26%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..++|+.|++++|.+.+.    +...+...++|+.|++++|.+++....   ..+...++|++||+++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            344455555555554431    122233444555555555555432110   112234555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.2e-06  Score=55.34  Aligned_cols=44  Identities=25%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             hcCCCCcEEecCCCccCCccCh-hhcCCCCCCCEEeccCCcCCCc
Q 034530           33 TVFSSLRELHLRDTGFKGTFDV-REFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        33 ~~~~~L~~l~l~~n~l~~~~~~-~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ..+++|+.|++++|++++..+. ..+..+++|+.|+|++|++++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            4689999999999999984321 2456799999999999999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.71  E-value=1e-05  Score=54.89  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=33.9

Q ss_pred             CCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI   73 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l   73 (92)
                      +++|+.|++++|.+.+.....+ ..+++|+.|++++|.+++.........+++|+.|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4556666666666554333333 44666666666666664332211233456666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=2.2e-05  Score=51.43  Aligned_cols=67  Identities=19%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCCc
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ..++|+.|++++|.+...    ++..+...++|+.|++++|.+.+...   ...+...++|++|++++|.++..
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            457788888888887642    23334667888888888888775321   12355567888888888888654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.63  E-value=5.5e-05  Score=44.90  Aligned_cols=65  Identities=20%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             CCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEec--cCCcCCC
Q 034530           11 LSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDL--SWNEIDN   75 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~l--s~N~l~~   75 (92)
                      .++|+.|++++|.+...    +...+...++|+.|++++|.+.+...   .+.+...+.|++|++  ++|.++.
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            34455555555554431    11222333445555555555543210   012333445555555  4455443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.60  E-value=4.2e-05  Score=45.42  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             ccCCCCCCCEEeccCc-cCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCCc
Q 034530            7 VSKGLSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n-~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .+...+.|+.|++++| .+...    +...+...++|+.|++++|.+.+...   .+.+...+.|++|++++|.+...
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            3567889999999999 88752    23345567899999999999985422   12344568899999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.59  E-value=2.6e-05  Score=52.98  Aligned_cols=66  Identities=17%  Similarity=0.059  Sum_probs=41.5

Q ss_pred             CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+++|+.|++++|.+.+.    ++.....+++|+.|++++|.+.+....   ..+.++++|++|++++|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            567777788877776654    333445677777777777777622110   124456777777777776554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.46  E-value=2.1e-05  Score=53.41  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             CCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCC-ccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDT-GFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n-~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+++|+.++++++.+.+..+..+. .+++|+.|++++| .++.......+.++++|++|++++|.+++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            456677777777766654444443 4667777777666 33321111123346666666666666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.45  E-value=0.00051  Score=38.75  Aligned_cols=56  Identities=16%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             EEeccCccCC-CCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCC
Q 034530           16 SLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        16 ~l~ls~n~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~   74 (92)
                      .++-+++.++ ..+|..+  .++++.|++++|+++...+ +.|..+++|+.++|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            4555666655 1223221  2356777777777774433 45666777777777777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.42  E-value=6.1e-05  Score=44.91  Aligned_cols=64  Identities=22%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             ccCCCCCCCEEeccCcc-CCCCChhhhhcC----CCCcEEecCCCc-cCCccChhhcCCCCCCCEEeccCC
Q 034530            7 VSKGLSKLKSLGLAGIK-LNRSILSSLTVF----SSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~-l~~~~~~~~~~~----~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      .+.++++|+.|+++++. +++..-..+..+    ++|+.|++++|. +++.-- ..+..+++|++|+++++
T Consensus        80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred             HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence            34455555555555553 333222223332    245555555543 443211 22444555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.27  E-value=0.00011  Score=48.17  Aligned_cols=64  Identities=13%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             CCCCCEEeccCccCCCCChhhhh---cCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLT---VFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~---~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~   74 (92)
                      +++|+.|++.+|.+.+..+..+.   .+++|+.|+++.|.+.+....   ..+.++++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45555555555444432111121   244555555555555432110   01123455555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.97  E-value=0.0015  Score=36.80  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccC
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK   49 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~   49 (92)
                      +++.|++++|.++...+..|..+++|+.+++++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6999999999999876777889999999999999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.88  E-value=0.00045  Score=41.16  Aligned_cols=64  Identities=3%  Similarity=0.072  Sum_probs=48.1

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhcCCC----CCCCEEeccCCc-CCCc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSF----NNLEVLDLSWNE-IDNL   76 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~----~~L~~l~ls~N~-l~~~   76 (92)
                      ..|+.++++++.+...--..+..+++|+.|+++++. +++.-- ..+..+    ++|++|++++|. ++..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            368999999999887656667899999999999985 654322 235443    479999999984 6653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.83  E-value=0.0034  Score=41.50  Aligned_cols=44  Identities=7%  Similarity=0.132  Sum_probs=19.5

Q ss_pred             hhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530           31 SLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        31 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .|..+.+|+.+.+..+ +. .++..+|.++ +|+.++++.|......
T Consensus       318 aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             hhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            3444444444444332 22 1222345555 5555555555544433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.79  E-value=0.004  Score=41.14  Aligned_cols=71  Identities=10%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             ccCCCCCCCEEeccCccCC-----CCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLN-----RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~-----~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      .+..+++|+.+.+.+|.+.     ...+..|..|++|+.+.+.. .+. .++...|.++++|+.+++..| ++.+....
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            4668899999999988765     34466789999999999984 466 344468999999999999655 65555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.32  E-value=0.0093  Score=38.52  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW   70 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~   70 (92)
                      +.++.+|+.+.+.++.++..-...|..+.+|+.+.+..+ ++ .++..+|.++++|+.+.+..
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence            345566666666666665544556666777777776543 33 23334566666676666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.08  E-value=0.011  Score=38.50  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=24.1

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW   70 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~   70 (92)
                      .+.+|+.+.+..+ +.......|..+.+|+.+++..+ +. .++..+|.++++|+.+++..
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc
Confidence            3444555444332 22222333444555555554432 22 12223444445555554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.99  E-value=0.026  Score=36.75  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCc
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE   72 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~   72 (92)
                      +.++.+|+.+.+..+ ++......|..|.+|+.+.+..+ ++ .++..+|.++++|+.++++.+.
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            334556666666543 33333445666677777766543 33 2334566777777777766553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.71  E-value=0.025  Score=36.82  Aligned_cols=62  Identities=16%  Similarity=0.211  Sum_probs=47.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      .+.++.+|+.+.+..+ ++......|..|.+|+.+.+..+ +. .++..+|.++++|+.++++.+
T Consensus       315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            3556788898888654 55555677889999999999876 55 344467999999999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.62  E-value=0.036  Score=35.74  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+.+++.+.+..+ +.......|..+.+|+.+.+..+.+.. ++..+|.++.+|+.+++..+ ++.+...
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~  327 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVY  327 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence            3444555554332 222333456778888888888777763 33357888888888888654 5444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.62  E-value=0.0096  Score=36.00  Aligned_cols=64  Identities=13%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             CCCCCEEeccCc-cCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCC
Q 034530           11 LSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        11 l~~L~~l~ls~n-~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~   74 (92)
                      -+.|+.|++++| .+...    +-..+..=..|+.|++++|++.+....   +.+..-+.|++|+|+.|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            345555666553 44421    112233344555555555555532110   11222344555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.87  E-value=0.037  Score=33.40  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWN   71 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N   71 (92)
                      +..-..|+.|++++|.+...    +...+..=+.|+.|++++|++.+.-..   +.+..-+.|+.|++++|
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            44567899999999998852    233445568899999999999854221   23444567999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.70  E-value=0.081  Score=34.43  Aligned_cols=65  Identities=11%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+..|+.+.+. +.+.......|..+.+|+.+.+..+ ++ .+...+|.++.+|+.+.+..+ ++.+..
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~  350 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPE  350 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred             cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence            34455555553 2233333455677788888887654 33 233356777888888887644 444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.19  E-value=0.077  Score=34.66  Aligned_cols=16  Identities=25%  Similarity=0.455  Sum_probs=7.4

Q ss_pred             CCCCCEEeccCCcCCC
Q 034530           60 FNNLEVLDLSWNEIDN   75 (92)
Q Consensus        60 ~~~L~~l~ls~N~l~~   75 (92)
                      +++|++|+++.|.+++
T Consensus       278 ~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          278 LPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGGCSEEECCSSCCBH
T ss_pred             CCCCCEEECCCCCCCh
Confidence            3444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 14 LKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGF--KGTFDVREFDSFN-NLEVLDLS 69
          ++SL +   +L+ +  + L  +    + + L D G       D+      N  L  L+L 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 70 WNEIDNLVVPQ-GKQLKCYLITL 91
           NE+ ++ V    + L+     +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (72), Expect = 0.003
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 9   KGLSKLKSLGLAGIKLN----RSILSSLTVFSSLRELHLRDTGFKGTFDVREF-----DS 59
           +  S L+ L LA   ++     S+ ++L    SLREL L +    G   + +        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQP 424

Query: 60  FNNLEVLDLSWNEIDNLVVPQGKQLK 85
              LE L L        +  + + L+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALE 450

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 10  GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLS 69
            L+KL+ L  A  K+  S +SSL   +++  L            +    +   +  L L+
Sbjct: 327 SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLN 381

Query: 70  WN 71
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 6e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 11  LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70
           L  L  L L    +  S +S ++  + L+ L   +        V    +  N+  L    
Sbjct: 306 LKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGH 360

Query: 71  NEIDNL 76
           N+I +L
Sbjct: 361 NQISDL 366

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.0 bits (76), Expect = 0.001
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 19  LAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71
           L   ++  ++   LT    L  L++      G   + +  +    +V   + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.98
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.74
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.67

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.2e-12  Score=77.17  Aligned_cols=75  Identities=21%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK   82 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~   82 (92)
                      .+..+++|+.|++++|.+....+..+..+++|+.+++++|++....+ +.|.++++|++|+|++|+++++++..+.
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~~f~  123 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             ccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH-HHHhCCCcccccccCCccccccCHHHhc
Confidence            45667888888888888887777777788888888888888886555 5688888888888888888888776443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.3e-11  Score=68.50  Aligned_cols=73  Identities=18%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             CccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            2 IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         2 ~~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      |..++.++.+++|+.+++++|.+.. +|+.+..+++|+.+++++|+++.. +  .+..+++|+++++++|++++.+.
T Consensus        10 l~~l~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~--~~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3          10 LTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D--GVANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             CSSCCCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCCcccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C--ccccccccCeEECCCCccCCCCC
Confidence            3445567788889999999999885 466788899999999999998854 3  47888899999999998887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=70.05  Aligned_cols=76  Identities=22%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             ccccCCCCCCCEEeccCc-cCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530            5 FVVSKGLSKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG   81 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n-~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~   81 (92)
                      ...+..+++++.+++++| .++...+..|..+++|+.+++++|+++...+ +.|..+++|++|+|++|+++..++..+
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~~  100 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTV  100 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccceeccCCCCcccChhhh
Confidence            345667788999999766 5887767778899999999999999996655 578889999999999999998887644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.1e-10  Score=64.73  Aligned_cols=70  Identities=19%  Similarity=0.158  Sum_probs=60.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.+++|+.+++++|.++.. | .+..+++|+.+++++|++........+..+++|+++++++|+++..+.
T Consensus        38 ~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          38 ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             hhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            577899999999999999974 4 589999999999999999966543568889999999999999987654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.14  E-value=1.3e-11  Score=77.10  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ....++.++.++++++.+.+. ++.+..+++++.+++++|+++|.+| ..++++++|++|++++|+++|..|.
T Consensus       216 ~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         216 LFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccc-ccccccccccccccCccCeecccCC-hHHhCCCCCCEEECcCCcccccCCC
Confidence            345677888888888888765 3457777888888888888888777 3577888888888888888876554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8e-11  Score=67.93  Aligned_cols=72  Identities=21%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ++.++.+++|+.+++++|.++...+..+..+++|+.+++++|++........+..+++|+++++++|.++..
T Consensus        56 l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          56 LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             cCCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccc
Confidence            334445555555555555555433333444555555555555555332212344555555555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=8.4e-11  Score=69.14  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=62.7

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .+..+++|+.+++++|++....+..|..+++|+.|++++|+++...+ +.|..+++|+++++++|.+....
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCH-HHhcCCccccccccccccccccc
Confidence            56678999999999999998878789999999999999999997666 67999999999999999987654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.03  E-value=4.8e-11  Score=74.41  Aligned_cols=71  Identities=21%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             ccCCCCCCCEEeccC-ccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            7 VSKGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~-n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.++.|++|++++ |.+.|.+|..+..+++|++|++++|++.+..+ ..+..++.|+.+++++|.+.+..+
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEEESCCC
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhcccccccccccccCc
Confidence            455566666666664 56666666666666666666666666665544 234445555555555555444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=66.78  Aligned_cols=63  Identities=13%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      +++|+.+++++|.++..  +.+..+++|+.+++++|+++...+ ..+..+++|+++++++|+++..
T Consensus        40 l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~L~~L~L~~N~i~~~  102 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVEL  102 (162)
T ss_dssp             TTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCG
T ss_pred             cccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCc-cccccccccccceecccccccc
Confidence            44445555555544432  124444455555555555443222 2233344555555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.7e-10  Score=69.59  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      +..+++++.+++++|++++..+..+..+++|+.+++++|++.+..| ..|.++++++++|+++|++.+.++
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccCh-hHhhhhhhcccccccccccccccc
Confidence            3445556666666666655555555566666666666666665444 345556666666666666655544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-09  Score=61.37  Aligned_cols=67  Identities=19%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+.++++|+.|++++|+++...+..|..+++|+.+++++|+++...+ +.+.. ..++.+++++|.+..
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~-~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQG-LSLQELVLSGNPLHC  117 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCS-CCCCEEECCSSCCCC
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCCCcccCh-hhhcc-ccccccccCCCcccC
Confidence            57789999999999999998878889999999999999999995444 45554 479999999999853

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=8.6e-10  Score=69.58  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC-CCcc
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP-QGKQ   83 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~-~~~~   83 (92)
                      +..+..+++++.+++++|++++..  .+..+++|+.|++++|++++ ++  .+.++++|++|++++|++++.++- ..+.
T Consensus       300 ~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l~~N~l~~l~~l~~l~~  374 (384)
T d2omza2         300 ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSAGHNQISDLTPLANLTR  374 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred             ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEECCCCcCCCChhhccCCC
Confidence            445677889999999999999753  37889999999999999985 33  488899999999999999998653 3345


Q ss_pred             hhhHH
Q 034530           84 LKCYL   88 (92)
Q Consensus        84 l~~~~   88 (92)
                      |+.+.
T Consensus       375 L~~L~  379 (384)
T d2omza2         375 ITQLG  379 (384)
T ss_dssp             CSEEE
T ss_pred             CCEee
Confidence            55443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=3.8e-09  Score=65.37  Aligned_cols=71  Identities=27%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+..++.++.+++++|.+.+..+..+..+++|+.|++++|.++. +| ..+..+++|++|++++|+++.++..
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp-~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VP-GGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CC-TTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             Hhhccccccccccccccccccccccccccccceeeecccccccc-cc-cccccccCCCEEECCCCccCccChh
Confidence            45667778888888888887767777778888888888888874 34 2577788888888888888776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.9e-09  Score=65.08  Aligned_cols=69  Identities=25%  Similarity=0.260  Sum_probs=43.7

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      .+.+++.+++++|.+....+..+..++.++.+++++|++++..+ +.|..+++|++|++++|+++..+..
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccccccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCCCcccChh
Confidence            44555566666666665544555566777777777777775444 4566677777777777777765543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=1.4e-09  Score=65.09  Aligned_cols=78  Identities=21%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC-CCcch
Q 034530            6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP-QGKQL   84 (92)
Q Consensus         6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~-~~~~l   84 (92)
                      ..+..+++++.+++++|.+.+.  ..+..+++|+.+++++|++++. +  .+.++++|++|++++|+++++++- ....|
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~--~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L  219 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S--PLASLPNLIEVHLKNNQISDVSPLANTSNL  219 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCCEEECTTSCCCBCGGGTTCTTC
T ss_pred             hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC-h--hhcCCCCCCEEECcCCcCCCCcccccCCCC
Confidence            3456788899999999998864  3478899999999999999864 3  378899999999999999988753 34455


Q ss_pred             hhHH
Q 034530           85 KCYL   88 (92)
Q Consensus        85 ~~~~   88 (92)
                      +.+.
T Consensus       220 ~~L~  223 (227)
T d1h6ua2         220 FIVT  223 (227)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            4433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=4.9e-09  Score=64.85  Aligned_cols=71  Identities=21%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcc
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ   83 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~   83 (92)
                      +++++|++++|+++...+..|..+++|+.+++++|.+....+ ..|.++++|+++++++|+++..+......
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~-~~f~~l~~L~~L~l~~n~l~~l~~~~~~~  101 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKT  101 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCCTT
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccch-hhhhCCCccCEecccCCccCcCccchhhh
Confidence            679999999999997766679999999999999999997666 56999999999999999999887664433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=1.1e-08  Score=60.18  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=54.4

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ...+..+++|+.+++++|.+...  +.+..+++++.+++.+|++++..   .++++++|+.|++++|++++.+
T Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         121 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc---cccCCCCCCEEECCCCCCCCCc
Confidence            34567788888888888888752  35788889999999999888643   3788999999999999998865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.2e-09  Score=63.96  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=39.2

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ   80 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~   80 (92)
                      ....+|+.+++++|.+++..+..+..+++++.+++++|++....+ ..|.++++|+.+++++|++.+..+..
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccccchhhhhhccccccChhH
Confidence            344555555555555554444445555566666666666554433 34555666666666666666555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=8.8e-09  Score=64.83  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP   79 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~   79 (92)
                      ..++.+..+++|++|++++|++++. + .+..+++|+.|++++|++.+..   .+..+++|+.+++++|.+++....
T Consensus        57 ~~l~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~---~l~~l~~L~~L~~~~~~~~~~~~~  128 (384)
T d2omza2          57 KSIDGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDIDPL  128 (384)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             CCccccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc---cccccccccccccccccccccccc
Confidence            3455566778888888888888764 3 3777888888888888887543   367788888888888877765443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=5.4e-09  Score=62.02  Aligned_cols=77  Identities=26%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC-CCcchh
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP-QGKQLK   85 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~-~~~~l~   85 (92)
                      .+..++.++.+++++|.+.+  +..+..+++|+.+++++|++.+..   .+.++++|+.|++++|++++.++- ....|+
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~  203 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLD  203 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGGGTTCTTCS
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccccc---cccCCCCCCEEECCCCCCCCChhhcCCCCCC
Confidence            34445555555555555553  334667888899999999888643   377899999999999999887532 334555


Q ss_pred             hHH
Q 034530           86 CYL   88 (92)
Q Consensus        86 ~~~   88 (92)
                      .+.
T Consensus       204 ~L~  206 (210)
T d1h6ta2         204 VLE  206 (210)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-08  Score=62.18  Aligned_cols=67  Identities=22%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      .+..++.++.+++++|++++..+..+..+++|+.|++++|+++ .+|. .+..+++|+.+++++|.+..
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~-~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh-hHCCCCCCCEEEecCCCCCC
Confidence            3567899999999999999887778899999999999999999 5663 46779999999999998764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=6.5e-09  Score=61.12  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=42.8

Q ss_pred             cccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530            4 KFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         4 ~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      .++.+..+++|+++++++|++++..  .+..+++|+.+++++|.+... +  .+.+++.|+.+++++|.....
T Consensus        54 ~l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~--~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          54 SIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T--PLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEECCSSCCCCC
T ss_pred             CccccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c--ccccccccccccccccccccc
Confidence            3445666777888888888777642  267777777777777776643 2  245555555555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=2.9e-08  Score=58.74  Aligned_cols=70  Identities=23%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ..+..+..+++|+.+++++|.+++. + .+..+++|+.+++++|++++. +  .+..+++|+.+++++|.+...+
T Consensus        59 ~~l~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~--~l~~l~~L~~L~l~~~~~~~~~  128 (210)
T d1h6ta2          59 KSVQGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S--SLKDLKKLKSLSLEHNGISDIN  128 (210)
T ss_dssp             CCCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G--GGTTCTTCCEEECTTSCCCCCG
T ss_pred             CCchhHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c--cccccccccccccccccccccc
Confidence            3345566788888888888888764 3 366788888888888888753 3  3677788888888887776543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=2.4e-08  Score=59.51  Aligned_cols=61  Identities=23%  Similarity=0.292  Sum_probs=52.1

Q ss_pred             ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccC
Q 034530            5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW   70 (92)
Q Consensus         5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~   70 (92)
                      ...++.+++|+.+++++|.+.+. + .+..+++|++|++++|++++..   .++++++|+.+++++
T Consensus       166 ~~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 LTPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEE
T ss_pred             chhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc---ccccCCCCCEEEeeC
Confidence            44578899999999999999874 3 4889999999999999999643   388999999999974

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.7e-08  Score=55.92  Aligned_cols=68  Identities=24%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             CCCCCCEEeccCccCCCCC--hhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSI--LSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~--~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .++.|+.+++++|+++...  +..+..+++|+.+++++|.++...+.. +.....|+.+++++|.+.....
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~-~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH-HHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhh-hhhccccceeecCCCCcCcCcc
Confidence            5889999999999999753  345678999999999999999755533 3345679999999999987543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.42  E-value=1e-09  Score=65.02  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=17.3

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK   49 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~   49 (92)
                      .+++|+.+++++|+++.. + .+..+++|+.|++++|+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC
T ss_pred             cccccceeECcccCCCCc-c-cccCCccccChhhcccccc
Confidence            344444555555444432 1 2444444444444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.4e-07  Score=55.21  Aligned_cols=55  Identities=13%  Similarity=0.208  Sum_probs=29.6

Q ss_pred             CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEe
Q 034530           13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLD   67 (92)
Q Consensus        13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~   67 (92)
                      +++++++++|.+....+..|..+++|+++++++|.+...++...|.+++.++.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            5666666666666543444566666666666666655443322333333333333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.28  E-value=1.7e-08  Score=59.54  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530            3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus         3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      ..++.+..+++|+.|++++|.+... +.....+++|+.+++++|+++.. +  .+..+++|++|++++|++++.+
T Consensus        61 ~~i~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l-~--~~~~l~~L~~L~L~~N~i~~~~  131 (198)
T d1m9la_          61 EKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S--GIEKLVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             SCCCCHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH-H--HHHHHHHSSEEEESEEECCCHH
T ss_pred             CCcccccCCccccChhhcccccccc-ccccccccccccccccccccccc-c--cccccccccccccccchhcccc
Confidence            3445566778888888888888753 44445566788888888888853 2  3666788888888888887754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.4e-06  Score=51.82  Aligned_cols=72  Identities=18%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             CCCCEEeccCccCCCCChhhhhcCCCCcEE-ecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530           12 SKLKSLGLAGIKLNRSILSSLTVFSSLREL-HLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK   85 (92)
Q Consensus        12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l-~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~   85 (92)
                      ..++.+++++|.++...+ ......++..+ ++.+|+++.. +...|.++++|++|++++|+++..++.....+.
T Consensus       153 ~~l~~L~l~~n~l~~i~~-~~~~~~~l~~~~~l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHN-CAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             SSCEEEECCSSCCCEECT-TTTTTCCEEEEECTTCTTCCCC-CTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             ccceeeeccccccccccc-ccccchhhhccccccccccccc-cHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            367778899998886533 33444555555 5688888854 435688899999999999999988776554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.14  E-value=5.9e-06  Score=50.79  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530           10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV   78 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~   78 (92)
                      .+++|+.|++++|++.. +|.   .+++|+.|++++|+++. +|.    .+++|++|++++|+++..|.
T Consensus       282 ~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~-l~~----~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCC
T ss_pred             cCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCc-ccc----ccCCCCEEECcCCcCCCCCc
Confidence            46889999999999985 453   36899999999999984 452    25689999999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.6e-05  Score=46.49  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=41.6

Q ss_pred             CCCCCCEEeccCc-cCCCCChhhhhcCCCCcEEecCCC-ccCCccChhhcCCCCCCCEEeccCC
Q 034530           10 GLSKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDT-GFKGTFDVREFDSFNNLEVLDLSWN   71 (92)
Q Consensus        10 ~l~~L~~l~ls~n-~l~~~~~~~~~~~~~L~~l~l~~n-~l~~~~~~~~~~~~~~L~~l~ls~N   71 (92)
                      .+++|+.++++++ .+++.....+.++++|++++++++ .+++... ..++++++|+.++++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-HHHhcCCCCCEEeeeCC
Confidence            4677888888775 456555666777788888888774 4554433 34666788888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=9.6e-06  Score=49.63  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=26.9

Q ss_pred             CCCCCEEeccCccCCCC-ChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccC
Q 034530           11 LSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW   70 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~   70 (92)
                      ..+++.++++++.+... ...-+..+++|++++++++.+.+... ..+..+++|++|++++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHH-HHHhcCCCCcCccccc
Confidence            34455555555544432 12223445555555555555443333 2344445555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.67  E-value=0.0001  Score=45.10  Aligned_cols=58  Identities=24%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530           11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV   77 (92)
Q Consensus        11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~   77 (92)
                      .++|+.|++++|+++. +|..   +.+|+.|++++|+++.. +  .+  .+.|++|++++|.++..+
T Consensus        57 ~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~l-~--~l--p~~L~~L~L~~n~l~~lp  114 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-S--DL--PPLLEYLGVSNNQLEKLP  114 (353)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-C--SC--CTTCCEEECCSSCCSSCC
T ss_pred             CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccchh-h--hh--cccccccccccccccccc
Confidence            3567777777777773 3432   23455555555555421 1  01  123555555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.8e-05  Score=49.09  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             CCCCCCCEEeccCccCCCCChhhhh-----cCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCC
Q 034530            9 KGLSKLKSLGLAGIKLNRSILSSLT-----VFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~~~~~~~-----~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..+++|+.|++++|.+.......+.     ...+|+.|++++|++++...   ...+..+++|+++++++|.++.
T Consensus        52 ~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          52 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             hcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            4556666666666665421111111     12356666666666653311   1234556667777777666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.49  E-value=3.5e-05  Score=47.89  Aligned_cols=67  Identities=27%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcC--CCCCCCEEeccCCcCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFD--SFNNLEVLDLSWNEID   74 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~--~~~~L~~l~ls~N~l~   74 (92)
                      +..+++|+.+++++|.+...    +...+..+++|+.+++++|.+++....   +.+.  ..+.|++||+++|+++
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            34455666666666655431    122344556666666666665533111   1111  1244566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4e-05  Score=43.31  Aligned_cols=60  Identities=27%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh------hhcCCCCCCCEEe
Q 034530            8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV------REFDSFNNLEVLD   67 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~------~~~~~~~~L~~l~   67 (92)
                      +..+++|+.+++++|.++...+-.+.....++.+++++|.+......      ..+..+|+|+.||
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            34589999999999999986554555667899999999999865431      2256789999997

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.3e-05  Score=49.44  Aligned_cols=66  Identities=24%  Similarity=0.190  Sum_probs=39.1

Q ss_pred             CCCCCCEEeccCccCCCC----Chhhhh-cCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCC
Q 034530           10 GLSKLKSLGLAGIKLNRS----ILSSLT-VFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus        10 ~l~~L~~l~ls~n~l~~~----~~~~~~-~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      ..++|+.|++++|.+.+.    +...+. ..+.|+.|++++|.+++...   .+.+...++|++||+++|+++.
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            345677777777776542    112222 34567777777777764211   0224446777888888777754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=0.00022  Score=40.31  Aligned_cols=68  Identities=12%  Similarity=0.109  Sum_probs=36.2

Q ss_pred             cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCC
Q 034530            8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN   75 (92)
Q Consensus         8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~   75 (92)
                      +...+.++.|++++|.+...    +...+...+.|+.+++++|.+.+....   ..+...+.|++|++++|....
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            34455666666666665531    122334456666666666666643111   224445666677766665443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.08  E-value=0.00015  Score=44.90  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             CCCCCCCEEeccCccCCCC-----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCCc
Q 034530            9 KGLSKLKSLGLAGIKLNRS-----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         9 ~~l~~L~~l~ls~n~l~~~-----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ...+.++.+++++|.+...     ....+...++|+.+++++|.++....   ...+..+++|++|++++|.+++.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            3467788888888887642     12234567888888888888764311   12356678888888888887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.57  E-value=0.0013  Score=36.96  Aligned_cols=68  Identities=12%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             CCCCCCCEEeccCc-cCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCCc
Q 034530            9 KGLSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL   76 (92)
Q Consensus         9 ~~l~~L~~l~ls~n-~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~   76 (92)
                      ...+.|+.++++++ .++..    +-..+...+.|+.+++++|.+.....   .+.+...+.|++|++++|.++..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            45689999999974 56542    22345567889999999999874321   12345578899999999998764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.48  E-value=0.0061  Score=33.85  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             CCCCCCEEeccC-ccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCC
Q 034530           10 GLSKLKSLGLAG-IKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID   74 (92)
Q Consensus        10 ~l~~L~~l~ls~-n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~   74 (92)
                      ..++|+.+++++ +.++..    +-..+...+.|+.|++++|.+......   +.+...+.++.++++.|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345566666655 334321    111223455566666666555432110   11233455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.67  E-value=0.013  Score=32.35  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             ccCCCCCCCEEeccCccCCCCC----hhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEec--cCCcCCC
Q 034530            7 VSKGLSKLKSLGLAGIKLNRSI----LSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDL--SWNEIDN   75 (92)
Q Consensus         7 ~l~~l~~L~~l~ls~n~l~~~~----~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~l--s~N~l~~   75 (92)
                      .+...+.|+.|++++|.+....    -..+...++++.++++++.+......   ..+...++++.+++  ++|.+..
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcH
Confidence            3557889999999999887532    22345678999999999888754221   23556778887555  4566644