Citrus Sinensis ID: 034541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccEEEEccccEEcccccccEEEEEccccEEEEEEcccccEEcccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccEcHccccEEEEcHHcccEEEEEcccEEEEEEEEccHHHHccccEEEcccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MALIKKLRKAkreappgekpepvrtHLRNMIIVPEMIGSIIGvyngktfnqveikpeMIGHYLAEFsisykpvkhgrpgigathssrfiplk
Flexible Loop (DISEMBL)
malikklrkakreappgekpepvrthLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHgrpgigathssrfiplk
Low Complexity Region (SEG)
MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered region (IsUnstruct)
*************************HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH*****************
Disordered Region (DISOPRED)
MALIKKL****************RTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISEMBL)
********************EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISPRO)
MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFI***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q945U1	153	40S ribosomal protein S15	N/A	no	1.0	0.601	0.989	2e-47
O65059	151	40S ribosomal protein S15	N/A	no	1.0	0.609	0.989	6e-47
Q9FY64	152	40S ribosomal protein S15	yes	no	1.0	0.605	0.978	7e-47
Q08112	152	40S ribosomal protein S15	yes	no	1.0	0.605	0.978	8e-47
P31674	154	40S ribosomal protein S15	yes	no	1.0	0.597	0.956	2e-46
Q9FIX6	149	40S ribosomal protein S15	no	no	1.0	0.617	0.934	8e-44
Q9FY65	150	40S ribosomal protein S15	no	no	1.0	0.613	0.923	1e-43
Q9FY66	152	40S ribosomal protein S15	no	no	1.0	0.605	0.880	3e-42
P62845	145	40S ribosomal protein S15	yes	no	0.989	0.627	0.846	1e-41
Q5RDI7	145	40S ribosomal protein S15	yes	no	0.989	0.627	0.846	1e-41

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Elaeis oleifera (taxid: 80265)

>sp|O65059|RS15_PICMA 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 60  MALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 119

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Picea mariana (taxid: 3335)

>sp|Q9FY64|RS154_ARATH 40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|P31674|RS15_ORYSJ 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIG
Sbjct: 63  MALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIG 122

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FIX6|RS155_ARATH 40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=3 SV=1

 Score =  175 bits (443), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 88/92 (95%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 58  MALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 117

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 118 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY65|RS153_ARATH 40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 59  MALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 118

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 119 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY66|RS152_ARATH 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 88/92 (95%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIG
Sbjct: 61  MALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIG 120

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 HYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|P62845|RS15_RAT 40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query: 2   ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
           +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct: 55  SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 114

Query: 62  YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 115 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

Rattus norvegicus (taxid: 10116)

>sp|Q5RDI7|RS15_PONAB 40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query: 2   ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
           +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct: 55  SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 114

Query: 62  YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 115 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
351722029	155	uncharacterized protein LOC100499781 [Gl	1.0	0.593	1.0	2e-46
357521277	154	40S ribosomal protein S15-like protein [	1.0	0.597	1.0	2e-46
351725659	155	uncharacterized protein LOC100499657 [Gl	1.0	0.593	1.0	2e-46
449432622	154	PREDICTED: 40S ribosomal protein S15-lik	1.0	0.597	1.0	3e-46
449465374	153	PREDICTED: 40S ribosomal protein S15-lik	1.0	0.601	1.0	4e-46
313586481	151	40S ribosomal protein S15D [Hevea brasil	1.0	0.609	1.0	4e-46
223469631	151	40S ribosomal protein S15-like protein [	1.0	0.609	1.0	4e-46
388518697	152	unknown [Medicago truncatula]	1.0	0.605	1.0	4e-46
255551941	151	40S ribosomal protein S15, putative [Ric	1.0	0.609	0.989	4e-46
356522093	158	PREDICTED: 40S ribosomal protein S15-lik	1.0	0.582	0.989	5e-46

>gi|351722029|ref|NP_001235950.1| uncharacterized protein LOC100499781 [Glycine max] gi|255626483|gb|ACU13586.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 64  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 123

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521277|ref|XP_003630927.1| 40S ribosomal protein S15-like protein [Medicago truncatula] gi|355524949|gb|AET05403.1| 40S ribosomal protein S15-like protein [Medicago truncatula] gi|388496760|gb|AFK36446.1| unknown [Medicago truncatula]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 63  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 122

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725659|ref|NP_001237868.1| uncharacterized protein LOC100499657 [Glycine max] gi|255625583|gb|ACU13136.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 64  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 123

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432622|ref|XP_004134098.1| PREDICTED: 40S ribosomal protein S15-like [Cucumis sativus] gi|449504095|ref|XP_004162251.1| PREDICTED: 40S ribosomal protein S15-like [Cucumis sativus]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 63  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 122

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465374|ref|XP_004150403.1| PREDICTED: 40S ribosomal protein S15-like [Cucumis sativus] gi|449530802|ref|XP_004172381.1| PREDICTED: 40S ribosomal protein S15-like isoform 1 [Cucumis sativus] gi|449530804|ref|XP_004172382.1| PREDICTED: 40S ribosomal protein S15-like isoform 2 [Cucumis sativus]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586481|gb|ADR71251.1| 40S ribosomal protein S15D [Hevea brasiliensis]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 60  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 119

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223469631|gb|ACM90156.1| 40S ribosomal protein S15-like protein [Jatropha curcas]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 60  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 119

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518697|gb|AFK47410.1| unknown [Medicago truncatula]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551941|ref|XP_002517015.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223543650|gb|EEF45178.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 60  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 119

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522093|ref|XP_003529684.1| PREDICTED: 40S ribosomal protein S15-like [Glycine max]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 67  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 126

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 127 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2018324	152	RPS15 "cytosolic ribosomal pro	1.0	0.605	0.978	1.2e-44
TAIR|locus:2184772	152	AT5G09510 [Arabidopsis thalian	1.0	0.605	0.978	1.2e-44
TAIR|locus:2158382	149	AT5G43640 [Arabidopsis thalian	1.0	0.617	0.934	8.4e-42
TAIR|locus:2184752	150	AT5G09500 [Arabidopsis thalian	1.0	0.613	0.923	1.7e-41
TAIR|locus:2184847	152	AT5G09490 [Arabidopsis thalian	1.0	0.605	0.880	1.6e-40
FB|FBgn0034138	148	RpS15 "Ribosomal protein S15"	1.0	0.621	0.869	4.2e-40
UNIPROTKB|F1NNC3	153	RPS15 "40S ribosomal protein S	0.989	0.594	0.846	1.4e-39
UNIPROTKB|F2Z4M3	144	RPS15 "40S ribosomal protein S	0.989	0.631	0.846	1.4e-39
UNIPROTKB|P62846	145	RPS15 "40S ribosomal protein S	0.989	0.627	0.846	1.4e-39
UNIPROTKB|F1Q1T5	115	RPS15 "Uncharacterized protein	0.989	0.791	0.846	1.4e-39

TAIR|locus:2018324 RPS15 "cytosolic ribosomal protein S15" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct:    61 MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184772 AT5G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 90/92 (97%), Positives = 91/92 (98%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct:    61 MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2158382 AT5G43640 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 86/92 (93%), Positives = 88/92 (95%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct:    58 MALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 117

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   118 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

TAIR|locus:2184752 AT5G09500 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct:    59 MALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 118

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   119 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184847 AT5G09490 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 81/92 (88%), Positives = 88/92 (95%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIG
Sbjct:    61 MALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIG 120

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   121 HYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

FB|FBgn0034138 RpS15 "Ribosomal protein S15" [Drosophila melanogaster (taxid:7227)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 80/92 (86%), Positives = 86/92 (93%)

Query:     1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             MALIKKLRKAK+EAPP EKPE V+THLRNMIIVPEM GSIIGVYNGK F QVE+KPEMIG
Sbjct:    57 MALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIG 116

Query:    61 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             HYL EF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   117 HYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|F1NNC3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query:     2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
             +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct:    63 SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 122

Query:    62 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   123 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|F2Z4M3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query:     2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
             +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct:    54 SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 113

Query:    62 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   114 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 144

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|P62846 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query:     2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
             +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct:    55 SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 114

Query:    62 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   115 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|F1Q1T5 RPS15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/91 (84%), Positives = 88/91 (96%)

Query:     2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
             +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct:    25 SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 84

Query:    62 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
             YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    85 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 115

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C5A282	RS19_THEGJ	No assigned EC number	0.5568	0.9565	0.6616	yes	no
O65059	RS15_PICMA	No assigned EC number	0.9891	1.0	0.6092	N/A	no
Q975I5	RS19_SULTO	No assigned EC number	0.5222	0.9456	0.6214	yes	no
C6A163	RS19_THESM	No assigned EC number	0.5227	0.9565	0.6616	yes	no
Q9XVP0	RS15_CAEEL	No assigned EC number	0.8	0.8152	0.4966	yes	no
Q18GF3	RS19_HALWD	No assigned EC number	0.5280	0.9565	0.6285	yes	no
Q08112	RS151_ARATH	No assigned EC number	0.9782	1.0	0.6052	yes	no
P34737	RS15_PODAS	No assigned EC number	0.8260	1.0	0.6052	yes	no
A3DNB1	RS19_STAMF	No assigned EC number	0.5666	0.9673	0.6223	yes	no
P62845	RS15_RAT	No assigned EC number	0.8461	0.9891	0.6275	yes	no
A2BMB3	RS19_HYPBU	No assigned EC number	0.5444	0.9673	0.6180	yes	no
Q5JDH3	RS19_PYRKO	No assigned EC number	0.5681	0.9565	0.6616	yes	no
P31674	RS15_ORYSJ	No assigned EC number	0.9565	1.0	0.5974	yes	no
Q56K10	RS15_BOVIN	No assigned EC number	0.8351	0.9891	0.6275	yes	no
Q01855	RS15_YEAST	No assigned EC number	0.7111	0.9456	0.6126	yes	no
Q5RDI7	RS15_PONAB	No assigned EC number	0.8461	0.9891	0.6275	yes	no
O59422	RS19_PYRHO	No assigned EC number	0.5909	0.9565	0.6666	yes	no
P62842	RS15_MESAU	No assigned EC number	0.8461	0.9891	0.6275	N/A	no
P62843	RS15_MOUSE	No assigned EC number	0.8461	0.9891	0.6275	yes	no
P62841	RS15_HUMAN	No assigned EC number	0.8461	0.9891	0.6275	yes	no
P62846	RS15_CHICK	No assigned EC number	0.8461	0.9891	0.6275	yes	no
P62844	RS15_PIG	No assigned EC number	0.8461	0.9891	0.6275	yes	no
O94715	RS15A_SCHPO	No assigned EC number	0.8	0.9782	0.5882	yes	no
Q8U002	RS19_PYRFU	No assigned EC number	0.5795	0.9565	0.6666	yes	no
B6YSL7	RS19_THEON	No assigned EC number	0.5681	0.9565	0.6616	yes	no
Q9UTQ6	RS15B_SCHPO	No assigned EC number	0.8	0.9782	0.5844	yes	no
P20342	RS15_XENLA	No assigned EC number	0.8241	0.9891	0.6275	N/A	no
Q9FIX6	RS155_ARATH	No assigned EC number	0.9347	1.0	0.6174	no	no
Q3IMY4	RS19_NATPD	No assigned EC number	0.5280	0.9565	0.6285	yes	no
Q945U1	RS15_ELAOL	No assigned EC number	0.9891	1.0	0.6013	N/A	no
P70066	RS15_XIPMA	No assigned EC number	0.8131	0.9891	0.6275	N/A	no
Q9V1T9	RS19_PYRAB	No assigned EC number	0.5795	0.9565	0.6666	yes	no
A1RWQ5	RS19_THEPD	No assigned EC number	0.5217	1.0	0.6524	yes	no
Q9FY65	RS153_ARATH	No assigned EC number	0.9239	1.0	0.6133	no	no
Q9FY64	RS154_ARATH	No assigned EC number	0.9782	1.0	0.6052	yes	no
Q54N17	RS15_DICDI	No assigned EC number	0.7142	0.9782	0.625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020133001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (185 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)	•			•	•	•	•		0.984
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)	•			•	•	•	•		0.972
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)	•			•	•	•	•		0.963
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)	•			•	•	•	•		0.952
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)	•			•	•	•	•		0.948
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.924
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.918
	GSVIVG00024035001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.899
	GSVIVG00001285001	SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.895
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•	•	•	•		0.892

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
PTZ00096	143	PTZ00096, PTZ00096, 40S ribosomal protein S15; Pro	7e-60
TIGR01025	135	TIGR01025, rpsS_arch, ribosomal protein S19(archae	9e-54
PRK04038	134	PRK04038, rps19p, 30S ribosomal protein S19P; Prov	1e-42
COG0185	93	COG0185, RpsS, Ribosomal protein S19 [Translation,	2e-35
pfam00203	81	pfam00203, Ribosomal_S19, Ribosomal protein S19	3e-34
PRK00357	92	PRK00357, rpsS, 30S ribosomal protein S19; Reviewe	1e-12
TIGR01050	92	TIGR01050, rpsS_bact, ribosomal protein S19, bacte	7e-12
CHL00050	92	CHL00050, rps19, ribosomal protein S19	8e-09

>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional

 Score =  179 bits (455), Expect = 7e-60
 Identities = 69/89 (77%), Positives = 81/89 (91%)

Query: 2   ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
            L+KKLRKAK+   PGEKP+ V+THLR+MIIVPEM+GS++GVYNGK FN VEIKPEMIGH
Sbjct: 55  TLLKKLRKAKKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGH 114

Query: 62  YLAEFSISYKPVKHGRPGIGATHSSRFIP 90
           YL EFSI+YKPV+HG+PG+GATHSSRFIP
Sbjct: 115 YLGEFSITYKPVRHGKPGVGATHSSRFIP 143

Length = 143

>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein S19(archaeal)/S15(eukaryotic)

 Score =  163 bits (413), Expect = 9e-54
 Identities = 71/92 (77%), Positives = 80/92 (86%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             L+KKLRKAK+EAP GEKPE +RTH R+MII+PEM+GS +GVYNGK F QVEIKPEMIG
Sbjct: 44  KKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIG 103

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYL EFSI+ KPVKHGRPGIGAT SS F+PLK
Sbjct: 104 HYLGEFSITRKPVKHGRPGIGATRSSMFVPLK 135

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 135

>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional

 Score =  134 bits (341), Expect = 1e-42
 Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 3/90 (3%)

Query: 3   LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
           L++K+RKA+RE    +K   +RTH+R+MII+PEM+G  I VYNGK F +VEI PEMIGHY
Sbjct: 48  LLEKIRKARRE---KKKGRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHY 104

Query: 63  LAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           L EF+++ K V+HG PGIGAT SS+F+PLK
Sbjct: 105 LGEFALTRKRVQHGSPGIGATRSSKFVPLK 134

Length = 134

>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (290), Expect = 2e-35
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+RKAK       K +P++T  R   I+PEM+G  I V+NGK F  VEI  EM+GH 
Sbjct: 15 LLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEITEEMVGHK 70

Query: 63 LAEFSISYKPVKHGRPGIGATHS 85
          L EF+ +   V HG  GI AT S
Sbjct: 71 LGEFAPTRTFVGHGADGIKATRS 93

Length = 93

>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19

 Score =  112 bits (281), Expect = 3e-34
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 1  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
             +K LRK K+E    EK E ++T  R   I+PEM+G  I VYNGK F  V I PEM+G
Sbjct: 8  FVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVYITPEMVG 66

Query: 61 HYLAEFSISYKPVKH 75
          H L EF+ + K V H
Sbjct: 67 HKLGEFAPTRKFVGH 81

Length = 81

>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed

 Score = 57.5 bits (140), Expect = 1e-12
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+ KA      G+K + ++T  R   I+PE +G  I V+NG+    V +   M+GH 
Sbjct: 15 LLKKVEKANES---GDK-KVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

Length = 92

>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle

 Score = 55.8 bits (135), Expect = 7e-12
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+ K         K + ++T  R   I+PEMIG  I V+NGK F  V I  +M+GH 
Sbjct: 15 LLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 92

>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19

 Score = 47.6 bits (114), Expect = 8e-09
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+ K   +    E+ E + T  R   I+P MIG  I V+NGK    + I  +M+GH 
Sbjct: 15 LLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
TIGR01025	135	rpsS_arch ribosomal protein S19(archaeal)/S15(euka	100.0
PTZ00096	143	40S ribosomal protein S15; Provisional	100.0
PRK04038	134	rps19p 30S ribosomal protein S19P; Provisional	100.0
KOG0898	152	consensus 40S ribosomal protein S15 [Translation,	100.0
COG0185	93	RpsS Ribosomal protein S19 [Translation, ribosomal	100.0
CHL00050	92	rps19 ribosomal protein S19	100.0
TIGR01050	92	rpsS_bact ribosomal protein S19, bacterial/organel	100.0
PRK00357	92	rpsS 30S ribosomal protein S19; Reviewed	100.0
PF00203	81	Ribosomal_S19: Ribosomal protein S19; InterPro: IP	99.97
PLN03147	92	ribosomal protein S19; Provisional	99.97
KOG0899	93	consensus Mitochondrial/chloroplast ribosomal prot	99.96

>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic)

Probab=100.00  E-value=5.6e-46  Score=264.53  Aligned_cols=91  Identities=78%  Similarity=1.247  Sum_probs=86.5

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      +||++++++++....++++++|+||+|+|+|+|+|||++|.||||++|++|+|+||||||||||||+||+++.|++||+|
T Consensus        45 ~Llkki~k~~~~~~~g~k~~~IKT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGig  124 (135)
T TIGR01025        45 KLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGRPGIG  124 (135)
T ss_pred             HHHHHHHHHHhccccccCCcceEEeccCCeeChhhcCcEEEEEcCCeeEEEEecCCeeceeecccccCcccCcCCCCCcC
Confidence            58999999887655567789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccceecC
Q 034541           82 ATHSSRFIPLK   92 (92)
Q Consensus        82 at~ss~f~plk   92 (92)
                      ||+||+|||||
T Consensus       125 At~ss~fvplK  135 (135)
T TIGR01025       125 ATRSSMFVPLK  135 (135)
T ss_pred             ccccccceeCc
Confidence            99999999997

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.

>PTZ00096 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=1.2e-45  Score=264.81  Aligned_cols=89  Identities=78%  Similarity=1.351  Sum_probs=87.0

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||+||+++++.+++++++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+||+|
T Consensus        55 ~LlkKirk~~~~~~~~~k~~~ikT~~R~~~IlP~mVG~ti~VyNGK~fv~V~I~~eMIGhkLGEFa~Trk~~~Hg~pGig  134 (143)
T PTZ00096         55 TLLKKLRKAKKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKPVRHGKPGVG  134 (143)
T ss_pred             HHHHHHHHHhhhcccccCCcceeEecccCeeCccccCcEEEEEcCCeeEeeEeccCeeceeeccccCCcccccCCCCCcC
Confidence            69999999998888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccee
Q 034541           82 ATHSSRFIP   90 (92)
Q Consensus        82 at~ss~f~p   90 (92)
                      ||+||+|||
T Consensus       135 ATrSS~fvp  143 (143)
T PTZ00096        135 ATHSSRFIP  143 (143)
T ss_pred             cccccccCC
Confidence            999999998

>PRK04038 rps19p 30S ribosomal protein S19P; Provisional

Probab=100.00  E-value=2.8e-45  Score=260.65  Aligned_cols=88  Identities=63%  Similarity=1.068  Sum_probs=82.9

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||++++++++.   .+++++|+||||+|+|+|+|||++|.|||||+|++|+|+||||||||||||+||+++.|++||+|
T Consensus        47 ~LlkKi~k~~~~---~~k~~~ikT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGig  123 (134)
T PRK04038         47 KLLEKIRKARRE---KKKGRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPGIG  123 (134)
T ss_pred             HHHHHHHHHHhc---ccCCcceeEeccCCeeChhhcCeEEEEecCceeEeEEeccCccceeeccccCCcccCcCCCCCcC
Confidence            589999998754   34557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccceecC
Q 034541           82 ATHSSRFIPLK   92 (92)
Q Consensus        82 at~ss~f~plk   92 (92)
                      ||+||+|||||
T Consensus       124 AT~sS~fvplK  134 (134)
T PRK04038        124 ATRSSKFVPLK  134 (134)
T ss_pred             ccccccceeCc
Confidence            99999999997

>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-42  Score=246.96  Aligned_cols=92  Identities=88%  Similarity=1.380  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCC
Q 034541            1 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGI   80 (92)
Q Consensus         1 ~~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~   80 (92)
                      +.|+++||+|++.+++.++|++++||.||++|+|+|||..|+|||||.|.+|+|+||||||+||||++|+||++|++||+
T Consensus        61 ~~liKklrkAkk~A~~~ekpe~VkTHlR~mII~PEMvGs~VGVyNGK~FnqvEiKPEMIGhYL~eFsiTykpvkHgrpgi  140 (152)
T KOG0898|consen   61 HSLIKKLRKAKKEAPPMEKPEVVKTHLRNMIIVPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGI  140 (152)
T ss_pred             HHHHHHHHHHHhhcCcccCcHHHHHHhhcceeeHhhhcceEEEecCcccceeeccHHHHhhhhhhccccccccccCCCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccceecC
Q 034541           81 GATHSSRFIPLK   92 (92)
Q Consensus        81 gat~ss~f~plk   92 (92)
                      |||+||+|+|||
T Consensus       141 gat~SsrfipLk  152 (152)
T KOG0898|consen  141 GATHSSRFIPLK  152 (152)
T ss_pred             CcccccccccCC
Confidence            999999999997

>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.9e-41  Score=225.36  Aligned_cols=80  Identities=51%  Similarity=0.755  Sum_probs=75.1

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||+|++++++.   +++ ++|+||||+|+|||+|||++|+||||++|+||+|+||||||||||||+||+++.|+.+|++
T Consensus        14 ~Ll~Kv~~~~~~---~~k-~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV~I~~eMVGHkLGEFapTR~~~~H~~~~~~   89 (93)
T COG0185          14 HLLKKVRKAKES---GKK-KPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEITEEMVGHKLGEFAPTRTFVGHGADGIK   89 (93)
T ss_pred             HHHHHHHHHHhc---cCC-CcceeeecccEechhhcCcEEEEEcCceEEEEEechhhcceecccccceecccccCCCCcC
Confidence            589999999863   334 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q 034541           82 ATHS   85 (92)
Q Consensus        82 at~s   85 (92)
                      ||+|
T Consensus        90 atr~   93 (93)
T COG0185          90 ATRS   93 (93)
T ss_pred             cccC
Confidence            9986

>CHL00050 rps19 ribosomal protein S19

Probab=100.00  E-value=9.5e-34  Score=190.66  Aligned_cols=71  Identities=37%  Similarity=0.505  Sum_probs=64.7

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHG   76 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~   76 (92)
                      .||+++++++.    ..++++|+||||+|+|||+|||++|+||||++|++|+|+||||||||||||+||+++.|+
T Consensus        14 ~Ll~ki~~~~~----~~~~~~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I~~eMVGhklGEFa~TRk~~~h~   84 (92)
T CHL00050         14 HLLKKIEKLNT----KEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRNFRGHA   84 (92)
T ss_pred             HHHHHHHHhhh----ccCCccceEEccccEeChhhcCcEEEEEcCceEEEEEEccccccceeeeEeeeecccccc
Confidence            57888887753    234578999999999999999999999999999999999999999999999999999995

>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle

Probab=100.00  E-value=1.7e-33  Score=189.47  Aligned_cols=73  Identities=38%  Similarity=0.571  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRP   78 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~   78 (92)
                      +|++++++++.    ..++++|+||||+|+|+|+|||++|+||||++|++|+|++|||||||||||+||++..|++.
T Consensus        14 ~Ll~ki~k~~~----~~~~~~ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I~~~MvGhklGEFa~TRk~~~h~~~   86 (92)
T TIGR01050        14 HLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTFKGHAKS   86 (92)
T ss_pred             HHHHHHHHhhc----ccCCCceEEEecccEEChHHCCcEEEEEcCceEEEEEeCcCeecceeeeeeceeeccccccC
Confidence            57888888762    23467899999999999999999999999999999999999999999999999999999753

the Archaea may be designated S15 or S19.

>PRK00357 rpsS 30S ribosomal protein S19; Reviewed

Probab=100.00  E-value=2.5e-33  Score=188.79  Aligned_cols=72  Identities=33%  Similarity=0.522  Sum_probs=65.6

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR   77 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k   77 (92)
                      +||+++++++..   + ++++|+||||+|+|+|+|||++|.||||++|++|+|+||||||||||||+||+++.|+.
T Consensus        14 ~Ll~ki~k~~~~---~-~~~~ikT~sR~s~IlP~~vg~~i~VyNGk~fv~v~I~~emiGhklGEFa~Tr~~~~H~~   85 (92)
T PRK00357         14 HLLKKVEKANES---G-DKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTRTFRGHAA   85 (92)
T ss_pred             HHHHHHHHHhhc---c-CCCceEEeeccCCcCHHHCCceEEEEcCCeeEeEEeccCccceeeeeecceeccccccc
Confidence            588999988632   2 45789999999999999999999999999999999999999999999999999999974

>PF00203 Ribosomal_S19: Ribosomal protein S19; InterPro: IPR002222 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=1.4e-32  Score=180.69  Aligned_cols=56  Identities=55%  Similarity=0.953  Sum_probs=54.7

Q ss_pred             CCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccC
Q 034541           20 PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH   75 (92)
Q Consensus        20 ~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h   75 (92)
                      +++++||+|+|+|+|+|||++|+||||++|++|+|++||||||||||++||+++.|
T Consensus        26 k~~ikt~~R~s~IlP~~vg~~i~VyNGk~f~~i~I~~~miG~klGEF~~Trk~~~H   81 (81)
T PF00203_consen   26 KKVIKTHSRSSTILPEMVGKTIGVYNGKKFVPIKITPEMIGHKLGEFAPTRKPVKH   81 (81)
T ss_dssp             TSEEEESSTTSBBSGTGTTSEEEEESSSSEEEEECSSTGTSSBCGCGSSSSSTSCT
T ss_pred             CcceEEEeCCCCcccceeceEEEEecCceEEEEEecccccceEeeceeeecccCCC
Confidence            38999999999999999999999999999999999999999999999999999988

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The small subunit ribosomal proteins can be categorised as: primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S19 contains 88-144 amino acid residues. In Escherichia coli, S19 is known to form a complex with S13 that binds strongly to 16S ribosomal RNA. Experimental evidence [] has revealed that S19 is moderately exposed on the ribosomal surface, and is designated a secondary rRNA binding protein. S19 belongs to a family of ribosomal proteins [, ] that includes: eubacterial S19; algal and plant chloroplast S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and eukaryotic S15 ('rig' protein).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2XZM_S 2XZN_S 2ZKQ_s 3U5C_P 3O30_I 3U5G_P 3O2Z_I 3IZB_R 1S1H_S 1XMO_S ....

>PLN03147 ribosomal protein S19; Provisional

Probab=99.97  E-value=9.1e-32  Score=181.38  Aligned_cols=69  Identities=22%  Similarity=0.341  Sum_probs=61.3

Q ss_pred             HHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCC
Q 034541            5 KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG   79 (92)
Q Consensus         5 ~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G   79 (92)
                      .+++++++.      .++|+||||+|+|+|+|||++|+||||++|++|+|+||||||||||||+||+++.|..+.
T Consensus        14 ~k~~~~~~~------~~~iktwSR~S~IlP~~vg~ti~VyNGk~fv~v~It~~MVGhKlGEFa~Trk~~~hk~~~   82 (92)
T PLN03147         14 ARIKKKRDL------LLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRKRRPHRAII   82 (92)
T ss_pred             HHHHHHHhc------CCceeEEcccceECHHHcCCEEEEeCCCceEEEEecCCccceeeeccccEecccCCCCcc
Confidence            356655532      158999999999999999999999999999999999999999999999999999998773

>KOG0899 consensus Mitochondrial/chloroplast ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.5e-30  Score=173.26  Aligned_cols=58  Identities=34%  Similarity=0.605  Sum_probs=55.7

Q ss_pred             CceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCC
Q 034541           21 EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRP   78 (92)
Q Consensus        21 ~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~   78 (92)
                      -+|+||||+|||||+|||.+|.|||||+|++|+|+|+|||||||||++|||.+.|.+.
T Consensus        35 ~pikt~sRasTIlP~~Vg~~~~IhNGk~~v~vkIte~mVGHKlGEFapTrk~~~~akt   92 (93)
T KOG0899|consen   35 APIKTWSRASTILPTMVGHTFAIHNGKEHVPVKITEDMVGHKLGEFAPTRKFFGHAKT   92 (93)
T ss_pred             CceeehhhhcchhhhhhCceEEEecCcceeeEEeecchhccccccccchhhhhccccC
Confidence            4799999999999999999999999999999999999999999999999999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	92
3iz6_R	154	Localization Of The Small Subunit Ribosomal Protein		2e-47
2zkq_s	145	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-42
3zey_I	152	High-resolution Cryo-electron Microscopy Structure		4e-35
3izb_R	142	Localization Of The Small Subunit Ribosomal Protein		2e-33
1s1h_S	80	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-27
3j0l_S	125	Core Of Mammalian 80s Pre-Ribosome In Complex With		5e-23
3jyv_S	71	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-23
3j20_T	132	Promiscuous Behavior Of Proteins In Archaeal Riboso		8e-23
2xzm_S	144	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-22
2gy9_S	87	Structure Of The 30s Subunit Of A Pre-Translocation		1e-06
3fih_S	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		1e-06
1vs5_S	92	Crystal Structure Of The Bacterial Ribosome From Es		1e-06
1p6g_S	91	Real Space Refined Coordinates Of The 30s Subunit F		1e-06
1qkf_A	92	Solution Structure Of The Ribosomal Protein S19 Fro		4e-06
1fka_S	93	Structure Of Functionally Activated Small Ribosomal		4e-06
3mr8_S	78	Recognition Of The Amber Stop Codon By Release Fact		7e-06
3fic_S	79	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-06
1pns_S	80	Crystal Structure Of A Streptomycin Dependent Ribos		8e-06
3bbn_S	92	Homology Model For The Spinach Chloroplast 30s Subu		3e-04

>pdb|3IZ6|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 154

Iteration: 1
 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 91/92 (98%)
Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIG
Sbjct: 63  MALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIG 122
Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>pdb|2ZKQ|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145

Iteration: 1
 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 88/91 (96%)
Query: 2   ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
           +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGH
Sbjct: 55  SLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGH 114
Query: 62  YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           YL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 115 YLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

>pdb|3ZEY|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 152

Iteration: 1
 Score =  142 bits (358), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 78/90 (86%)
Query: 3   LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
           L+K+LR+AK+    GEKP+ V+THLR+++I PEM+GS++G+YNG+ FN VEIK EMIGHY
Sbjct: 63  LLKRLREAKKNVKAGEKPKAVKTHLRDVVITPEMVGSVVGIYNGRQFNAVEIKGEMIGHY 122
Query: 63  LAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           L EFS++YKPV HGRPG GATHSSRFIPLK
Sbjct: 123 LGEFSLTYKPVAHGRPGFGATHSSRFIPLK 152

>pdb|3IZB|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 142

Iteration: 1
 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 3/90 (3%)
Query: 3   LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
            +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHY
Sbjct: 56  FMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHY 115
Query: 63  LAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           L EFSI+Y PV+HGR G     +SRFIPLK
Sbjct: 116 LGEFSITYTPVRHGRAG---ATTSRFIPLK 142

>pdb|1S1H|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 80

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 2  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
            +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GH
Sbjct: 9  GFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGH 68
Query: 62 YLAEFSISYKPV 73
          YL EFSI+Y PV
Sbjct: 69 YLGEFSITYTPV 80

>pdb|3J0L|S Chain S, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 125

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 60/75 (80%)
Query: 3   LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
            + K+R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG Y
Sbjct: 51  FVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKY 110
Query: 63  LAEFSISYKPVKHGR 77
           LAEF+++YKP  HG+
Sbjct: 111 LAEFAMTYKPTTHGK 125

>pdb|3JYV|S Chain S, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 71

Iteration: 1
 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 2  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 61
            +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GH
Sbjct: 9  GFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGH 68
Query: 62 YLA 64
          YL 
Sbjct: 69 YLG 71

>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 132

Iteration: 1
 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 5   KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 64
           KKL +  R A  G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL 
Sbjct: 45  KKLLRKIRLAKKGKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLG 104
Query: 65  EFSISYKPVKHGRPGIGATHSSRFIPLK 92
           EF+ + K V+HG PG+GAT SS F+ +K
Sbjct: 105 EFAPTRKKVEHGAPGVGATRSSMFVAVK 132

>pdb|2XZM|S Chain S, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 144

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 58/73 (79%)
Query: 3   LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
            + K+R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG Y
Sbjct: 61  FVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKY 120
Query: 63  LAEFSISYKPVKH 75
           LAEF+++YKP  H
Sbjct: 121 LAEFAMTYKPTTH 133

>pdb|2GY9|S Chain S, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 87

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V +  EM+GH L EF
Sbjct: 15 LKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEF 73
Query: 67 S 67
          +
Sbjct: 74 A 74

>pdb|3FIH|S Chain S, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V +  EM+GH L EF
Sbjct: 14 LKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEF 72
Query: 67 S 67
          +
Sbjct: 73 A 73

>pdb|1VS5|S Chain S, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V +  EM+GH L EF
Sbjct: 16 LKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEF 74
Query: 67 S 67
          +
Sbjct: 75 A 75

>pdb|1P6G|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V +  EM+GH L EF
Sbjct: 15 LKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEF 73
Query: 67 S 67
          +
Sbjct: 74 A 74

>pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein S19 From Thermus Thermophilus Length = 92

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 23 VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 77
          ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 30 IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 84

>pdb|1FKA|S Chain S, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 93

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 23 VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 77
          ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 31 IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 85

>pdb|3MR8|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 78

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13 LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 67 S 67
          +
Sbjct: 72 A 72

>pdb|3FIC|S Chain S, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 79

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13 LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 67 S 67
          +
Sbjct: 72 A 72

>pdb|1PNS|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 80

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 17 GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS 67
          GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+
Sbjct: 25 GEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFA 74

>pdb|3BBN|S Chain S, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 92

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 7  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 66
          LRK ++     EK E + T  R   I+P MIG  I ++NG+    + I   M+GH L EF
Sbjct: 16 LRKIEKLNKKAEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEF 74
Query: 67 S 67
          +
Sbjct: 75 A 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	7e-52
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	1e-45
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	2e-43
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	3e-12
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	6e-12
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	1e-11
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	1e-11

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s 1s1h_S 3jyv_S* Length = 154

 Score =  158 bits (402), Expect = 7e-52
 Identities = 88/92 (95%), Positives = 91/92 (98%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
           MALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIG
Sbjct: 63  MALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIG 122

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S* Length = 142

 Score =  142 bits (360), Expect = 1e-45
 Identities = 64/92 (69%), Positives = 74/92 (80%), Gaps = 3/92 (3%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
              +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+G
Sbjct: 54  AGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLG 113

Query: 61  HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
           HYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct: 114 HYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S Length = 144

 Score =  136 bits (345), Expect = 2e-43
 Identities = 43/83 (51%), Positives = 61/83 (73%)

Query: 1   MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 60
              + K+R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG
Sbjct: 59  AKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIG 118

Query: 61  HYLAEFSISYKPVKHGRPGIGAT 83
            YLAEF+++YKP  HG+ G    
Sbjct: 119 KYLAEFAMTYKPTTHGKTGAAGG 141

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S* 1p6g_S 1p87_S 2aw7_S ... Length = 92

 Score = 55.2 bits (134), Expect = 6e-12
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+ KA      G+K +P+RT  R   I P MIG  I V+NG+    V +  EM+GH 
Sbjct: 15 LLKKVEKAVES---GDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 92

 Score = 54.5 bits (132), Expect = 1e-11
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L++K+ K  ++    EK E + T  R   I+P MIG  I ++NG+    + I   M+GH 
Sbjct: 15 LLRKIEKLNKK---AEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ... Length = 93

 Score = 54.4 bits (132), Expect = 1e-11
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L++K+ +   +   GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH 
Sbjct: 15 LLEKVLELNAK---GEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHK 70

Query: 63 LAEFS 67
          L EF+
Sbjct: 71 LGEFA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
3j20_T	132	30S ribosomal protein S19P; archaea, archaeal, KIN	100.0
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	100.0
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	100.0
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	100.0
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	100.0
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	100.0
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	100.0
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	100.0

>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.5e-46  Score=263.19  Aligned_cols=87  Identities=57%  Similarity=0.929  Sum_probs=67.5

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||++++++++++    ++++|+||||+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++.|++||+|
T Consensus        46 ~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGig  121 (132)
T 3j20_T           46 KLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVG  121 (132)
T ss_dssp             HHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC-----
T ss_pred             HHHHHHHHHHhcc----CCcceEecccCCEeChHHCCcEEEEECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCcC
Confidence            5899999998653    578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccceecC
Q 034541           82 ATHSSRFIPLK   92 (92)
Q Consensus        82 at~ss~f~plk   92 (92)
                      ||+||+|+|||
T Consensus       122 AT~sS~fiplK  132 (132)
T 3j20_T          122 ATRSSMFVAVK  132 (132)
T ss_dssp             -----------
T ss_pred             cccccccccCC
Confidence            99999999997

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s

Probab=100.00  E-value=1.6e-47  Score=276.15  Aligned_cols=91  Identities=96%  Similarity=1.471  Sum_probs=81.4

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||+++|+|++++++++++++|+||||+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++.|++||+|
T Consensus        64 ~Llkklrkak~~~~~~~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~HgkpGiG  143 (154)
T 3iz6_R           64 ALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG  143 (154)
T ss_dssp             CCCSSCCSCCCSHHHHHTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSSSEEECCCCSSCCSSCGGGTTSSHHHH
T ss_pred             HHHHHHHHhhhccCcccCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEeccCccceeeeeeeeeeccCcCCCCCCC
Confidence            57888999987777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccceecC
Q 034541           82 ATHSSRFIPLK   92 (92)
Q Consensus        82 at~ss~f~plk   92 (92)
                      ||+||+|+|||
T Consensus       144 AT~SS~FiPlK  154 (154)
T 3iz6_R          144 ATHSSRFIPLK  154 (154)
T ss_dssp             HTTCC------
T ss_pred             cccccccccCC
Confidence            99999999997

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*

Probab=100.00  E-value=4.6e-44  Score=255.42  Aligned_cols=88  Identities=73%  Similarity=1.257  Sum_probs=75.7

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||+++|+|++++++++++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++||+ 
T Consensus        55 ~Ll~klrkak~~~~~~~k~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~Hg~~gi-  133 (142)
T 3u5c_P           55 GFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAGA-  133 (142)
T ss_dssp             HHHHHHHHHHHHSCSSSCCCCEEECCTTCBCCGGGTTCEEEEESSSSEEEEECCGGGTTSBGGGGSCCSCCCCCSCC---
T ss_pred             HHHHHHHHHhhhcCcccCCcceEeeccCCEeChhHCCCEEEEEcCCeeEEEecccCccceeeeeeeeEecccccCCCCc-
Confidence            6999999999999989999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCccccceecC
Q 034541           82 ATHSSRFIPLK   92 (92)
Q Consensus        82 at~ss~f~plk   92 (92)
                        +||+|+|||
T Consensus       134 --~SS~fiplK  142 (142)
T 3u5c_P          134 --TTSRFIPLK  142 (142)
T ss_dssp             -----------
T ss_pred             --cccccccCC
Confidence              999999997

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S

Probab=100.00  E-value=5.3e-43  Score=250.40  Aligned_cols=85  Identities=51%  Similarity=1.019  Sum_probs=73.5

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||++++++++++++++++++|+||||+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||++++|++||+|
T Consensus        60 ~LLkKi~k~~~~~~~~~k~~vIKTwsR~stIlPemVG~ti~VyNGK~fvpV~IteeMVGHKLGEFa~TRk~~~H~~pGig  139 (144)
T 2xzm_S           60 KFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAA  139 (144)
T ss_dssp             HHHHHHHHHHHHSCTTTCCCCEEECCTTCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCCSCCCCCCC----
T ss_pred             HHHHHHHHHhhhhhccCCCceEEEeccCcCcCHhHCCcEEEEecCCeeeeeeecccccceeeeceeeecccCccCCCCcC
Confidence            58999999998877788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccc
Q 034541           82 ATHSS   86 (92)
Q Consensus        82 at~ss   86 (92)
                      ||+||
T Consensus       140 at~s~  144 (144)
T 2xzm_S          140 GGKGK  144 (144)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            99997

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=2.4e-37  Score=207.21  Aligned_cols=76  Identities=29%  Similarity=0.468  Sum_probs=68.9

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIG   81 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G~g   81 (92)
                      .||++++++++.   + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++.+-.
T Consensus        14 ~Llkki~~~~~~---~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~Trk~~~H~~~~~~   89 (92)
T 3bbn_S           14 HLLRKIEKLNKK---A-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNK   89 (92)
T ss_dssp             HHHHHHHTTTTT---T-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSCSSCCSSSCCCCCC
T ss_pred             HHHHHHHHHHhc---C-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceeeeecccccCCCccc
Confidence            589999988752   3 368999999999999999999999999999999999999999999999999999999876543

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...

Probab=100.00  E-value=4.4e-37  Score=206.36  Aligned_cols=74  Identities=35%  Similarity=0.550  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG   79 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k~G   79 (92)
                      .||++++++++.    .++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++.+
T Consensus        14 ~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~Trk~~~H~~~~   87 (93)
T 3a1p_B           14 HLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEA   87 (93)
T ss_dssp             HHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCCCSCCCCTTGGG
T ss_pred             HHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceeeeecccccCccc
Confidence            589999998864    24689999999999999999999999999999999999999999999999999999997643

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...

Probab=100.00  E-value=1e-36  Score=204.26  Aligned_cols=72  Identities=38%  Similarity=0.528  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEecccCCC
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR   77 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~~~h~k   77 (92)
                      .||++++++++.    .++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++
T Consensus        14 ~Llkki~k~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~TRk~~~H~~   85 (92)
T 3i1m_S           14 HLLKKVEKAVES----GDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAA   85 (92)
T ss_dssp             HHHHHHHHHHHT----CCCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSCCCCCC----
T ss_pred             HHHHHHHHHHhc----CCCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeeeEecccccCc
Confidence            589999998864    246899999999999999999999999999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d2gy9s1	79	d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherich	8e-23
d2uubs1	80	d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus t	2e-22

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

 Score = 81.7 bits (202), Expect = 8e-23
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L+KK+ KA          +P+RT  R   I P MIG  I V+NG+    V +  EM+GH 
Sbjct: 13 LLKKVEKAV----ESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHK 68

Query: 63 LAEFSI 68
          L EF+ 
Sbjct: 69 LGEFAP 74

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

 Score = 80.1 bits (198), Expect = 2e-22
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 3  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 62
          L++K+ +         +   ++T  R   IVPEM+G  I VYNGK    V I   M+GH 
Sbjct: 14 LLEKVLELN----AKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHK 69

Query: 63 LAEFSI 68
          L EF+ 
Sbjct: 70 LGEFAP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d2uubs1	80	Ribosomal protein S19 {Thermus thermophilus [TaxId	100.0
d2gy9s1	79	Ribosomal protein S19 {Escherichia coli [TaxId: 56	100.0

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.5e-35  Score=189.12  Aligned_cols=67  Identities=36%  Similarity=0.546  Sum_probs=60.5

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEec
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP   72 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~   72 (92)
                      .||+++++++..    .++++|+||||+|+|+|+|||++|+|||||+|++|+|++|||||||||||+||++
T Consensus        13 ~Llkki~~~~~~----~~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It~eMVGhklGEFa~TR~f   79 (80)
T d2uubs1          13 HLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTY   79 (80)
T ss_dssp             HHHHHHHTTTSS----CCCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECCGGGTTSBSGGGSCCCCC
T ss_pred             HHHHHHHHHHhc----CCCCcEeEeccccEechHHcceEEEEEeCCeeEeEEeccCcccceeecccccccC
Confidence            478888766532    3568999999999999999999999999999999999999999999999999986

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-34  Score=188.16  Aligned_cols=67  Identities=39%  Similarity=0.553  Sum_probs=61.4

Q ss_pred             hHHHHHHHHhhhCCCCCCCCceEeeccCceecccccccEEEEecCcceeeeccCCCcceeeeeEEeeeEec
Q 034541            2 ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP   72 (92)
Q Consensus         2 ~ll~k~~k~~~~~~~~~k~~~ikt~sR~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIG~klGEFa~Trk~   72 (92)
                      .||++++++...    .++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||++
T Consensus        12 ~Llkki~k~~~~----~~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It~eMVGhklGEFa~TR~f   78 (79)
T d2gy9s1          12 HLLKKVEKAVES----GDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTY   78 (79)
T ss_dssp             TTTSHHHHGGGG----SCCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCSSCC
T ss_pred             HHHHHHHHHHhc----CCCCcEEEEecccccChHHhCcEEEEEeCCeeEEEEeccCccceeeecccccccC
Confidence            578899887754    2457899999999999999999999999999999999999999999999999986