Citrus Sinensis ID: 034549


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERVAKEPKSPSKATKSPKKA
ccHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccc
MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLL*************************
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MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERVAKEPKSPSKATKSPKKA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Histone H2A.x Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation.probableP16104
Probable histone H2A.4 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.probableQ9LZ46
Probable histone H2A.1 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.probableQ2HU68

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2NQB, chain C
Confidence level:very confident
Coverage over the Query: 1-69
View the alignment between query and template
View the model in PyMOL