Citrus Sinensis ID: 034641

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcEEEEEEEEcHHHHHHHcccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHEEEEEEEccEHHHHHHHHHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
meksksfpeysssfsgefdfdnqsnayifngpsskgngfatssdpeikrkkriasYNVFTVENKLKSSVRNSFKwikgkfsdvrygnm
Flexible Loop (DISEMBL)
meksksfpeyssSFSGEFDFDNQSNAYIfngpsskgngfatssdpeikrkkriasynvftvenklkssvrnsfkwikgkfsdvrygnm
Low Complexity Region (SEG)
MeksksfpeysssfsgefDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Disordered region (IsUnstruct)
****************************************************IASYNVFTVENKLKSSVRNSFKWIKGKFSD******
Disordered Region (DISOPRED)
**************************************************KRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGN*
Disordered Region (DISEMBL)
*************FSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Disordered Region (DISPRO)
*****************************************SSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYGNM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
224082498	87	predicted protein [Populus trichocarpa]	0.977	0.988	0.837	2e-33
224066609	87	predicted protein [Populus trichocarpa]	0.977	0.988	0.837	4e-33
359493151	87	PREDICTED: uncharacterized protein LOC10	0.977	0.988	0.755	6e-31
296081211	114	unnamed protein product [Vitis vinifera]	0.965	0.745	0.752	5e-30
356576077	86	PREDICTED: uncharacterized protein LOC10	0.965	0.988	0.744	2e-28
255633116	86	unknown [Glycine max]	0.965	0.988	0.744	3e-28
357443571	86	hypothetical protein MTR_1g098310 [Medic	0.965	0.988	0.732	2e-26
388506074	87	unknown [Lotus japonicus]	0.965	0.977	0.712	2e-25
356561406	86	PREDICTED: uncharacterized protein LOC10	0.965	0.988	0.651	1e-23
255566682	92	conserved hypothetical protein [Ricinus	0.954	0.913	0.755	4e-23

>gi|224082498|ref|XP_002306717.1| predicted protein [Populus trichocarpa] gi|222856166|gb|EEE93713.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKSKSFP+YSSSFSGEF F+++SN+Y FNGP  KGNGFATSSDPE+KRKKRIASYNVFT
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          +E KLKS+VRNSFKWIK KFSDVRYG
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYG 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066609|ref|XP_002302161.1| predicted protein [Populus trichocarpa] gi|118482032|gb|ABK92947.1| unknown [Populus trichocarpa] gi|222843887|gb|EEE81434.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 77/86 (89%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKSKSFP+YSS FSGEF F++QSN+Y FNGP  KGNGFATSSDPE+KRKKRIASYNVFT
Sbjct: 1  MEKSKSFPQYSSFFSGEFGFEDQSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          VE KLKSS RNSFKWIK KFSD RYG
Sbjct: 61 VEGKLKSSARNSFKWIKSKFSDARYG 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493151|ref|XP_003634523.1| PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 79/86 (91%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKS+SFPEYSSS++GEF F ++SN+Y FNGP +KG+GFATS+DPE+KRKKRIASYNVFT
Sbjct: 1  MEKSRSFPEYSSSYAGEFGFHDRSNSYSFNGPCNKGSGFATSNDPELKRKKRIASYNVFT 60

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          +E KLK+SVR+SFKWIK K SD+RYG
Sbjct: 61 MEGKLKTSVRSSFKWIKTKLSDIRYG 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081211|emb|CBI18237.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 78/85 (91%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKS+SFPEYSSS++GEF F ++SN+Y FNGP +KG+GFATS+DPE+KRKKRIASYNVFT
Sbjct: 1  MEKSRSFPEYSSSYAGEFGFHDRSNSYSFNGPCNKGSGFATSNDPELKRKKRIASYNVFT 60

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRY 85
          +E KLK+SVR+SFKWIK K SD+RY
Sbjct: 61 MEGKLKTSVRSSFKWIKTKLSDIRY 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576077|ref|XP_003556161.1| PREDICTED: uncharacterized protein LOC100776380 [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKSKSFPEYS S++ EF F  +SN+Y FNGP+ KGNGF+ SSDPE+KRKKRI +YNV T
Sbjct: 1  MEKSKSFPEYSCSYT-EFGFSERSNSYNFNGPNQKGNGFSASSDPELKRKKRIKAYNVLT 59

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          VE KLK+SVRNSFKWIK KFSD+RYG
Sbjct: 60 VEGKLKTSVRNSFKWIKNKFSDIRYG 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633116|gb|ACU16913.1| unknown [Glycine max]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKSKSFPEYS S++ EF F  +SN+Y FNGP+ KGNGF+ SSDPEIKRKKRI +YNV T
Sbjct: 1  MEKSKSFPEYSCSYT-EFGFSERSNSYNFNGPNQKGNGFSASSDPEIKRKKRIKAYNVLT 59

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          VE KLK++VRNSFKWIK KFSD+RYG
Sbjct: 60 VEGKLKTNVRNSFKWIKNKFSDIRYG 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443571|ref|XP_003592063.1| hypothetical protein MTR_1g098310 [Medicago truncatula] gi|355481111|gb|AES62314.1| hypothetical protein MTR_1g098310 [Medicago truncatula] gi|388512871|gb|AFK44497.1| unknown [Medicago truncatula]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKSKSFPEYS S++ EF +  +SN+Y FNGPS KG+GF+ S+D E+KRKKRI SYNV  
Sbjct: 1  MEKSKSFPEYSCSYT-EFGYSERSNSYNFNGPSDKGSGFSASNDSELKRKKRIKSYNVLA 59

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          VE KLKSSVRNSFKWIK KFSDVRYG
Sbjct: 60 VEGKLKSSVRNSFKWIKNKFSDVRYG 85

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506074|gb|AFK41103.1| unknown [Lotus japonicus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQ-SNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVF 59
          MEKSKSFPEYS S++ EF F  + S +Y FNGPS KG+GF  SSDPE+KRKKRI SYNV 
Sbjct: 1  MEKSKSFPEYSCSYT-EFGFSRERSKSYNFNGPSEKGSGFYASSDPELKRKKRIKSYNVL 59

Query: 60 TVENKLKSSVRNSFKWIKGKFSDVRYG 86
          TVE K+K+SVRNSFKWIK KF+D+RYG
Sbjct: 60 TVEGKVKTSVRNSFKWIKNKFTDIRYG 86

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561406|ref|XP_003548972.1| PREDICTED: uncharacterized protein LOC100815306 [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEK+ S P+YS S+S EF F  +SN+Y FNGP  KG+GF+ ++DPE+KRKKRI +YNVFT
Sbjct: 1  MEKNNSLPKYSCSYS-EFGFTERSNSYNFNGPIQKGSGFSAANDPELKRKKRIKAYNVFT 59

Query: 61 VENKLKSSVRNSFKWIKGKFSDVRYG 86
          VE KLK+SVRN FKWIK KF D+R G
Sbjct: 60 VEGKLKTSVRNGFKWIKNKFGDIRNG 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566682|ref|XP_002524325.1| conserved hypothetical protein [Ricinus communis] gi|223536416|gb|EEF38065.1| conserved hypothetical protein [Ricinus communis]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 74/90 (82%), Gaps = 6/90 (6%)

Query: 1  MEKSKSFPEYSSSFSGEFDFDNQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFT 60
          MEKS+S+PEYSSSFSGE      SN+Y FNGP  KG GFATSSDPE+KR+KRIASYNVFT
Sbjct: 1  MEKSRSYPEYSSSFSGE----FGSNSYSFNGPYQKGTGFATSSDPEMKRRKRIASYNVFT 56

Query: 61 VENKLKSSVRNSFKWIKGKFS--DVRYGNM 88
          +E KLKSSVRNSFKWIK KFS  DVRY  M
Sbjct: 57 MEGKLKSSVRNSFKWIKNKFSSTDVRYDAM 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2140598	87	AT4G09890 "AT4G09890" [Arabido	0.602	0.609	0.6	1.8e-14
TAIR|locus:2143059	105	AT5G11970 "AT5G11970" [Arabido	0.5	0.419	0.545	4.1e-10
TAIR|locus:2030295	127	AT1G72720 "AT1G72720" [Arabido	0.590	0.409	0.5	4.7e-09
TAIR|locus:2047700	116	AT2G19460 "AT2G19460" [Arabido	0.511	0.387	0.551	4.7e-09
TAIR|locus:2062018	110	AT2G47480 "AT2G47480" [Arabido	0.420	0.336	0.621	1.6e-08
TAIR|locus:2088227	102	AT3G13910 "AT3G13910" [Arabido	0.397	0.343	0.6	4.2e-08
TAIR|locus:1006230186	124	AT3G05725 "AT3G05725" [Arabido	0.5	0.354	0.477	5.3e-08
TAIR|locus:2081630	110	AT3G62640 "AT3G62640" [Arabido	0.636	0.509	0.440	6.8e-08

TAIR|locus:2140598 AT4G09890 "AT4G09890" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query:    22 NQSNAYIFNGPSSKGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFS 81
             N+SN+Y FNGP         ++DPE+KRKKR+ASYN+F  E KLKS+++NSFKWIK KFS
Sbjct:    25 NRSNSYNFNGP-------CINTDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWIKNKFS 77

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143059 AT5G11970 "AT5G11970" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/44 (54%), Positives = 36/44 (81%)

Query:    43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
             +DPE++RKKR+ASY ++ VE K+K S RNSF+W+K +++ V YG
Sbjct:    60 TDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2030295 AT1G72720 "AT1G72720" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 26/52 (50%), Positives = 35/52 (67%)

Query:    35 KGNGFATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
             K  GF    + EI+RKKR+ASYNV+ VE ++K S++ SFKW K   S+  YG
Sbjct:    74 KKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047700 AT2G19460 "AT2G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query:    35 KGNGFATSS----DPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGK 79
             KG   ++SS    DP+++RKKR+ SY  +TVE KLK S R SFKWIK K
Sbjct:    62 KGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062018 AT2G47480 "AT2G47480" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query:    43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGK 79
             SD E+KRKKRIA Y  +TVE K+KS+++N F+WIK K
Sbjct:    66 SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNK 102

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088227 AT3G13910 "AT3G13910" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 21/35 (60%), Positives = 28/35 (80%)

Query:    43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIK 77
             SDPE +RK+R+A Y V++VE K+K S+R SFKW K
Sbjct:    62 SDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:1006230186 AT3G05725 "AT3G05725" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 21/44 (47%), Positives = 34/44 (77%)

Query:    43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
             +DPEIKRK+R+A Y +++ E K+K ++R S+KWIK + S + +G
Sbjct:    80 NDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081630 AT3G62640 "AT3G62640" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query:    31 GPSSKGNGFATS---SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
             G +SK    AT     D E KRKKRIA+Y  + +E K+KS+V+  F WIK ++S + +G
Sbjct:    52 GSTSKTRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        71   0.00091  102 3  11 23  0.37    29
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  452 (48 KB)
  Total size of DFA:  87 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.23u 0.15s 9.38t   Elapsed:  00:00:00
  Total cpu time:  9.23u 0.15s 9.38t   Elapsed:  00:00:00
  Start:  Thu May  9 22:12:36 2013   End:  Thu May  9 22:12:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V1125 hypothetical protein (87 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam12023	47	pfam12023, DUF3511, Domain of unknown function (DU	9e-20

>gnl|CDD|204810 pfam12023, DUF3511, Domain of unknown function (DUF3511)

 Score = 74.3 bits (183), Expect = 9e-20
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 43 SDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG 86
          SDPE+KR++R+A+Y  + VE K+K+S+R SFKWIK K S + +G
Sbjct: 4  SDPEMKRRRRVAAYKAYAVEGKVKASLRKSFKWIKDKCSHIVHG 47

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF12023	47	DUF3511: Domain of unknown function (DUF3511); Int	99.97

>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised

Probab=99.97  E-value=4.1e-33  Score=172.44  Aligned_cols=47  Identities=57%  Similarity=0.958  Sum_probs=45.7

Q ss_pred             CCCCCHHHHhhhhheeeeeeeeehhhhhhhhccceeeccccceeccc
Q 034641           40 ATSSDPEIKRKKRIASYNVFTVENKLKSSVRNSFKWIKGKFSDVRYG   86 (88)
Q Consensus        40 ~~~~dpE~kRkkRVA~Yk~Y~vEGKvK~S~R~sfrWiK~k~s~ivyG   86 (88)
                      |+++|||+|||||||+||+|+||||||+|||+||||||++|++||||
T Consensus         1 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~R~sfrWiK~k~s~iv~G   47 (47)
T PF12023_consen    1 WGFNDPEMKRKKRVASYKVYAVEGKVKGSLRKSFRWIKNKCSRIVYG   47 (47)
T ss_pred             CCCCCHHHHHHHHHHhhheeeeehHHHHHHHhhhHHHHHHhhHhhcC
Confidence            56799999999999999999999999999999999999999999998

This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00