Citrus Sinensis ID: 034768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MTYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHccccccEEccccEEEEEccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcHHHHHHHHHHcccccEEEEccEEEEEcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtyvtdfsNLTVLMTREVRIACTVAQmereggisprvsplaqvrdagnlltragftlpsvdvdqytvkynsgnLFILFYFIFRK
Flexible Loop (DISEMBL)
mtyvtdfsnltvlmTREVRIACTVAQMereggisprvsplAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Low Complexity Region (SEG)
MTYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Disordered region (IsUnstruct)
**YVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIF**
Disordered Region (DISOPRED)
MTYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFR*
Disordered Region (DISEMBL)
MTYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Disordered Region (DISPRO)
*TYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTYVTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYFIFRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
O80543	355	Putative methyltransferas	yes	no	0.642	0.152	0.833	5e-22
Q54JW0	436	NADH dehydrogenase [ubiqu	yes	no	0.702	0.135	0.426	5e-10
A3KP37	321	NADH dehydrogenase [ubiqu	yes	no	0.630	0.165	0.471	3e-09
A2APY7	343	NADH dehydrogenase [ubiqu	yes	no	0.630	0.154	0.490	9e-09
Q5TEU4	345	NADH dehydrogenase [ubiqu	no	no	0.630	0.153	0.490	1e-08
B2GV71	343	NADH dehydrogenase [ubiqu	yes	no	0.630	0.154	0.490	1e-08
Q5RBS1	345	NADH dehydrogenase [ubiqu	yes	no	0.630	0.153	0.490	1e-08

>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/54 (83%), Positives = 51/54 (94%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           +E+RIACT+A MEREGGISPR+SPLAQVRDAGNLLTRAGF+LP VDVD+Y VKY
Sbjct: 211 KELRIACTLAHMEREGGISPRLSPLAQVRDAGNLLTRAGFSLPGVDVDEYVVKY 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q54JW0|NDUF5_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Dictyostelium discoideum GN=ndufaf5 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFI 76
           E++ +  +A++EREGG SP VSP  ++ D GN+L++  +TLP+VD ++ T+ Y+  N+F+
Sbjct: 202 ELKDSLYLAEIEREGGFSPHVSPFTKISDIGNILSKNRYTLPTVDTEKITINYD--NMFV 259

Query: 77  L 77
           L
Sbjct: 260 L 260

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           E+R +  +A++EREGG +P +SP   V D GNLL +AGF + +VD+D+  V Y
Sbjct: 176 ELRCSLQLAELEREGGFAPHISPYTAVTDLGNLLGQAGFNMLTVDIDEVQVNY 228

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           E+R +  +A+ EREGG SP +SP   V D G+LL RAGF   +VD D+  V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           E+R +  +A+ EREGG SP +SP   V D G+LL RAGF   +VD D+  V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           E+R +  +A+ EREGG SP +SP   V D G+LL RAGF   +VD D+  V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query: 17  EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
           E+R +  +A+ EREGG SP +SP   V D G+LL RAGF   +VD D+  V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
218186575	347	hypothetical protein OsI_37783 [Oryza sa	0.678	0.164	0.894	4e-24
108862309	215	expressed protein [Oryza sativa Japonica	0.714	0.279	0.866	4e-24
242085186	343	hypothetical protein SORBIDRAFT_08g00640	0.678	0.166	0.894	9e-24
225460187	339	PREDICTED: uncharacterized protein At1g2	0.678	0.168	0.912	2e-23
222616792	348	hypothetical protein OsJ_35544 [Oryza sa	0.678	0.163	0.877	2e-23
223975545	343	unknown [Zea mays] gi|413916686|gb|AFW56	0.678	0.166	0.877	2e-23
297741046	348	unnamed protein product [Vitis vinifera]	0.678	0.163	0.912	2e-23
226529312	343	uncharacterized protein LOC100276173 [Ze	0.678	0.166	0.859	3e-23
413916683	185	hypothetical protein ZEAMMB73_760336 [Ze	0.666	0.302	0.892	8e-23
388521067	331	unknown [Lotus japonicus]	0.678	0.172	0.859	9e-23

>gi|218186575|gb|EEC69002.1| hypothetical protein OsI_37783 [Oryza sativa Indica Group]

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACT+AQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVD+YTVKYNSG
Sbjct: 202 KELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDRYTVKYNSG 258

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862309|gb|ABA96102.2| expressed protein [Oryza sativa Japonica Group]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 57/60 (95%)

Query: 13  LMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +  RE+RIACT+AQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVD+YTVKYNSG
Sbjct: 155 IKERELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDRYTVKYNSG 214

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242085186|ref|XP_002443018.1| hypothetical protein SORBIDRAFT_08g006400 [Sorghum bicolor] gi|241943711|gb|EES16856.1| hypothetical protein SORBIDRAFT_08g006400 [Sorghum bicolor]

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/57 (89%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACTVAQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVDQYTVKYN+ 
Sbjct: 198 KELRIACTVAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDQYTVKYNNA 254

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460187|ref|XP_002279511.1| PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVD+YTVKY S 
Sbjct: 195 KELRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDEYTVKYRSA 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616792|gb|EEE52924.1| hypothetical protein OsJ_35544 [Oryza sativa Japonica Group]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/57 (87%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACT+AQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVD+YTVKYNS 
Sbjct: 203 KELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDRYTVKYNSA 259

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223975545|gb|ACN31960.1| unknown [Zea mays] gi|413916686|gb|AFW56618.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/57 (87%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACTVAQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVDQYTV+YN+ 
Sbjct: 198 KELRIACTVAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDQYTVRYNNA 254

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741046|emb|CBI31358.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVD+YTVKY S 
Sbjct: 204 KELRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDEYTVKYRSA 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529312|ref|NP_001143495.1| uncharacterized protein LOC100276173 [Zea mays] gi|195621470|gb|ACG32565.1| hypothetical protein [Zea mays]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/57 (85%), Positives = 55/57 (96%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACT+AQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVDQYTV+YN+ 
Sbjct: 198 KELRIACTIAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDQYTVRYNNA 254

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916683|gb|AFW56615.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 55/56 (98%)

Query: 16 REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNS 71
          +E+RIACTVAQMEREGGISPR+SPLAQVRDAGNLLTRAGFTLP VDVDQYTV+YN+
Sbjct: 40 KELRIACTVAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDQYTVRYNN 95

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521067|gb|AFK48595.1| unknown [Lotus japonicus]

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/57 (85%), Positives = 54/57 (94%)

Query: 16  REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSG 72
           +E+RIACT+AQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP VDVD+Y VKY+S 
Sbjct: 187 KELRIACTIAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPGVDVDEYVVKYDSA 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2199650	355	AT1G22800 [Arabidopsis thalian	0.642	0.152	0.833	3.5e-20
FB|FBgn0033891	333	CG8067 [Drosophila melanogaste	0.654	0.165	0.490	1.3e-10
ASPGD|ASPL0000071377	376	AN4918 [Emericella nidulans (t	0.630	0.140	0.528	6.3e-10
DICTYBASE|DDB_G0287769	436	ndufaf5 "NADH dehydrogenase [u	0.702	0.135	0.426	1.4e-09
UNIPROTKB|F1NUD7	305	F1NUD7 "Uncharacterized protei	0.630	0.173	0.509	4.8e-09
UNIPROTKB|E1C306	346	E1C306 "Uncharacterized protei	0.630	0.153	0.509	6.5e-09
ZFIN|ZDB-GENE-070410-110	322	ndufaf5 "NADH dehydrogenase (u	0.630	0.164	0.471	7.1e-09
UNIPROTKB|F1SBJ3	345	NDUFAF5 "Uncharacterized prote	0.630	0.153	0.528	8.3e-09
UNIPROTKB|B3KR61	267	NDUFAF5 "HCG1811060, isoform C	0.630	0.198	0.490	1.5e-08
CGD|CAL0002386	353	orf19.2514 [Candida albicans (	0.607	0.144	0.490	1.9e-08

TAIR|locus:2199650 AT1G22800 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 45/54 (83%), Positives = 51/54 (94%)

Query:    16 REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             +E+RIACT+A MEREGGISPR+SPLAQVRDAGNLLTRAGF+LP VDVD+Y VKY
Sbjct:   211 KELRIACTLAHMEREGGISPRLSPLAQVRDAGNLLTRAGFSLPGVDVDEYVVKY 264

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

FB|FBgn0033891 CG8067 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 27/55 (49%), Positives = 41/55 (74%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNS 71
             E+R +  +A++ER+GGISP +SP  Q+RD G+LL RAGFT+ ++D D+  + Y S
Sbjct:   181 ELRSSLQLAELERKGGISPHISPFTQIRDIGSLLNRAGFTMLTIDTDELVIGYPS 235

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ASPGD|ASPL0000071377 AN4918 [Emericella nidulans (taxid:162425)]

 Score = 149 (57.5 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A +ER GG+SP VSPLA VRD G LLT+AGF + +VDV+   V++
Sbjct:   231 ELRTSLQLADLERRGGVSPHVSPLADVRDVGGLLTKAGFKMLTVDVEDIVVEF 283

GO:0005622 "intracellular" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0287769 ndufaf5 "NADH dehydrogenase [ubiquinone] complex 1 assembly factor 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 26/61 (42%), Positives = 45/61 (73%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFI 76
             E++ +  +A++EREGG SP VSP  ++ D GN+L++  +TLP+VD ++ T+ Y+  N+F+
Sbjct:   202 ELKDSLYLAEIEREGGFSPHVSPFTKISDIGNILSKNRYTLPTVDTEKITINYD--NMFV 259

Query:    77 L 77
             L
Sbjct:   260 L 260

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1NUD7 F1NUD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A++EREGG SP VSP   V D G+LL+RAGF   +VD D+  V Y
Sbjct:   160 ELRCSLQLAELEREGGFSPHVSPFVAVSDLGHLLSRAGFNTLTVDTDEIQVNY 212

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1C306 E1C306 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A++EREGG SP VSP   V D G+LL+RAGF   +VD D+  V Y
Sbjct:   197 ELRCSLQLAELEREGGFSPHVSPFVAVSDLGHLLSRAGFNTLTVDTDEIQVNY 249

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

ZFIN|ZDB-GENE-070410-110 ndufaf5 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 5" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A++EREGG +P +SP   V D GNLL +AGF + +VD+D+  V Y
Sbjct:   177 ELRCSLQLAELEREGGFAPHISPYTAVTDLGNLLGQAGFNMLTVDIDEVQVNY 229

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1SBJ3 NDUFAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 28/53 (52%), Positives = 35/53 (66%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A+ EREGG SP VSP   V D G+LL RAGFT  +VD D+  V Y
Sbjct:   196 ELRCSLQLAETEREGGFSPHVSPFTAVSDLGHLLGRAGFTTLTVDTDEIQVNY 248

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B3KR61 NDUFAF5 "HCG1811060, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
             E+R +  +A+ EREGG SP +SP   V D G+LL RAGF   +VD D+  V Y
Sbjct:   196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248

GO:0008168 "methyltransferase activity" evidence=IEA

CGD|CAL0002386 orf19.2514 [Candida albicans (taxid:5476)]

 Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 25/51 (49%), Positives = 39/51 (76%)

Query:    17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTV 67
             E+R +  +A++ER+GGISPRVSPL  + D G+LLT+AGF++ ++D +   V
Sbjct:   239 ELRTSLQLAELERKGGISPRVSPLIHLNDIGSLLTKAGFSMLTIDSEDIIV 289

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80543	Y1280_ARATH	No assigned EC number	0.8333	0.6428	0.1521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG2940	325	consensus Predicted methyltransferase [General fun	99.79
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.92
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.14
KOG0031	171	consensus Myosin regulatory light chain, EF-Hand p	87.85
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	87.09
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	82.1
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	81.84

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.79  E-value=1.5e-19  Score=133.87  Aligned_cols=72  Identities=46%  Similarity=0.624  Sum_probs=70.2

Q ss_pred             ccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHHHh
Q 034768            8 SNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFY   79 (84)
Q Consensus         8 Stlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~~~   79 (84)
                      |-||.+||+|||-+++.++.+|.||++|||+||...+|+|.+|.+|||+.+++|++.+++.||+.++||.+.
T Consensus       173 smlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~mfeLm~dL  244 (325)
T KOG2940|consen  173 SMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMEDL  244 (325)
T ss_pred             HHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccceeecCchHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999999999999999999999999875

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.92  E-value=4.8e-09  Score=74.71  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=59.0

Q ss_pred             eccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHHHhh
Q 034768            7 FSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYF   80 (84)
Q Consensus         7 FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~~~~   80 (84)
                      |++++++++.|++++|..++..      +|.++|.+.+++.++|++.|+.   .+.+.++++|+++.++|++.-
T Consensus       138 ~~~~~~~~~~el~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~f~~~~~~l~~lk  202 (251)
T PRK10258        138 FTTLVQGSLPELHQAWQAVDER------PHANRFLPPDAIEQALNGWRYQ---HHIQPITLWFDDALSAMRSLK  202 (251)
T ss_pred             EEeCCCCchHHHHHHHHHhccC------CccccCCCHHHHHHHHHhCCce---eeeeEEEEECCCHHHHHHHHH
Confidence            7899999999999999998754      8999999999999999988764   588999999999999999863

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.14  E-value=0.0038  Score=42.91  Aligned_cols=62  Identities=15%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             eccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHHHhh
Q 034768            7 FSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFYF   80 (84)
Q Consensus         7 FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~~~~   80 (84)
                      +++++.+++.++++.+..           +..+|.+.+++.++++.+ |..+.++...+.+.|++...+++..-
T Consensus       133 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~  194 (240)
T TIGR02072       133 FSTFGPGTLHELRQSFGQ-----------HGLRYLSLDELKALLKNS-FELLTLEEELITLSFDDPLDVLRHLK  194 (240)
T ss_pred             EEeCCccCHHHHHHHHHH-----------hccCCCCHHHHHHHHHHh-cCCcEEEEEEEEEeCCCHHHHHHHHH
Confidence            567788888888887743           336899999999999999 99999999999999999999998763

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]

Probab=87.85  E-value=0.72  Score=32.62  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=36.5

Q ss_pred             eccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCC
Q 034768            7 FSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGF   55 (84)
Q Consensus         7 FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF   55 (84)
                      ||-|......|+|+|+.-.|..+        .-|++.+|+.+.+...|=
T Consensus        23 Famf~q~QIqEfKEAF~~mDqnr--------DG~IdkeDL~d~~aSlGk   63 (171)
T KOG0031|consen   23 FAMFDQSQIQEFKEAFNLMDQNR--------DGFIDKEDLRDMLASLGK   63 (171)
T ss_pred             HHHhhHHHHHHHHHHHHHHhccC--------CCcccHHHHHHHHHHcCC
Confidence            78889999999999999999874        579999999999988774

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=87.09  E-value=0.73  Score=31.24  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             cceeccCCcchHHHHHHHHHHHHhhh-----------cCCCCCCcCCCCCHHHHHHHHHhcCCCCceEE
Q 034768            4 VTDFSNLTVLMTREVRIACTVAQMER-----------EGGISPRVSPLAQVRDAGNLLTRAGFTLPSVD   61 (84)
Q Consensus         4 ~~~FStlg~~TL~ELr~Aw~~vd~~~-----------~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd   61 (84)
                      +.++++...+.+.++.+.|...=...           .....++..+|.+.+++.+.|.++||..+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  209 (223)
T TIGR01934       141 ILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR  209 (223)
T ss_pred             EEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence            45666666666777766665421000           01112445678999999999999999887554

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=82.10  E-value=0.03  Score=37.94  Aligned_cols=53  Identities=25%  Similarity=0.282  Sum_probs=37.7

Q ss_pred             cccceecc-----CCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcC
Q 034768            2 TYVTDFSN-----LTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAG   54 (84)
Q Consensus         2 ~~~~~FSt-----lg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aG   54 (84)
                      .||+||++     -+.+.+-+-++||-.+.+...|..++-+-||.+.++.....++-|
T Consensus        78 ~~V~D~~~~~~~~p~~~~~Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~G  135 (149)
T PF05573_consen   78 IYVTDYSTTDWDQPGDGEWIDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHG  135 (149)
T ss_dssp             EEEEES-TS-TT-S---EEEEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTE
T ss_pred             EEEEecccccccCCCCCceEEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcC
Confidence            48999999     555667777778877777778888999999999999999998865

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=81.84  E-value=1.6  Score=30.07  Aligned_cols=40  Identities=10%  Similarity=-0.015  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHH
Q 034768           38 SPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFIL   77 (84)
Q Consensus        38 npF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~   77 (84)
                      ..+.+..++.++|+++||....+.......+|+.+.+++|
T Consensus       190 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~  229 (230)
T PRK07580        190 IYPHREKGIRRALAAAGFKVVRTERISSGFYFSRLLEAVR  229 (230)
T ss_pred             ccccCHHHHHHHHHHCCCceEeeeeccchhHHHHHHHHhh
Confidence            3577899999999999999888877777777888887775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.47
1xxl_A	239	YCGJ protein; structural genomics, protein structu	94.19
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	93.85
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	93.18
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	92.9
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	92.02
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	88.87
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	88.39
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	85.64
2hpu_A	175	NOSL protein; alpha beta topology, metal transport	82.57
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	80.29

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.47  E-value=1.5e-05  Score=56.61  Aligned_cols=58  Identities=19%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcCC-----CCCHHHHHHHHHhcCCCC-ceEEeeeeEEEcCCHHHHHHHh
Q 034768           16 REVRIACTVAQMEREGGISPRVSP-----LAQVRDAGNLLTRAGFTL-PSVDVDQYTVKYNSGNLFILFY   79 (84)
Q Consensus        16 ~ELr~Aw~~vd~~~~~g~~phVnp-----F~~~~di~~aL~~aGF~~-~vvd~e~i~~~Y~~~~~Lm~~~   79 (84)
                      .+|+++|..++..      +|.|+     |.+.++++.+++++||.. +++|.+.+.++|+++.+||+++
T Consensus       159 ~~l~~~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~  222 (313)
T 3bgv_A          159 FELIRRLEASETE------SFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKY  222 (313)
T ss_dssp             HHHHHHHTTSSSS------EEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGG
T ss_pred             HHHHHHHHhhccC------ccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHc
Confidence            4777788877654      56666     999999999999999998 8999999999999999999987

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=94.19  E-value=0.1  Score=35.10  Aligned_cols=58  Identities=7%  Similarity=-0.012  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHH
Q 034768           16 REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFIL   77 (84)
Q Consensus        16 ~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~   77 (84)
                      .+++..+..++..+.   ..|. ++.+..++.++|.++||....+....+.+.|++....|+
T Consensus       131 ~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~w~~~~~  188 (239)
T 1xxl_A          131 PVLDEFVNHLNRLRD---PSHV-RESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGG  188 (239)
T ss_dssp             HHHHHHHHHHHHHHC---TTCC-CCCBHHHHHHHHHHTTEEEEEEEEEEEEEEHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhcc---cccc-CCCCHHHHHHHHHHCCCcEEEEEeecCccCHHHHHHHcC
Confidence            344444444433221   2455 456899999999999999888888888888887766553

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=93.85  E-value=0.081  Score=36.37  Aligned_cols=67  Identities=9%  Similarity=-0.133  Sum_probs=45.6

Q ss_pred             ccCCcchHHHHHHHHHHHHhhhcC--CCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcC-CHHH
Q 034768            8 SNLTVLMTREVRIACTVAQMEREG--GISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYN-SGNL   74 (84)
Q Consensus         8 Stlg~~TL~ELr~Aw~~vd~~~~~--g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~-~~~~   74 (84)
                      ++.+.+++.++.+.+..+-.....  ...++...|.+.+++.++|+++||....+......+.++ +...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  222 (279)
T 3ccf_A          153 EFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFG  222 (279)
T ss_dssp             EEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEEECCEECSSGGGH
T ss_pred             EecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEecccccccCCHHH
Confidence            445566777777777765332110  011333468899999999999999998888888888887 5433

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=93.18  E-value=0.13  Score=34.38  Aligned_cols=44  Identities=18%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             CCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHHHh
Q 034768           35 PRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFILFY   79 (84)
Q Consensus        35 phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~~~   79 (84)
                      ++..+|.+.+++.++|+++||... +........|+++..+++..
T Consensus       162 ~~~~~~~~~~~~~~~l~~aGf~v~-~~~~~~~~~~~~~~~~~~~l  205 (259)
T 2p35_A          162 LRRKPLPPPSDYFNALSPKSSRVD-VWHTVYNHPMKDADSIVEWV  205 (259)
T ss_dssp             ---CCCCCHHHHHHHHGGGEEEEE-EEEEEEEEEESCHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHhcCCceE-EEEEEeeeccCCchHHhhhh
Confidence            556789999999999999999643 44456677889998887654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=92.90  E-value=0.21  Score=33.76  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHH
Q 034768           38 SPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLF   75 (84)
Q Consensus        38 npF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~L   75 (84)
                      .++.+..++.++|+++||....++...+.+.|++....
T Consensus       165 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  202 (260)
T 1vl5_A          165 HRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDR  202 (260)
T ss_dssp             CCCCBHHHHHHHHHHHTCEEEEEEEEEEEEEHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHCCCeEEEEEEeeccCCHHHHHHh
Confidence            36779999999999999999999988888888665443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=92.02  E-value=0.18  Score=33.70  Aligned_cols=47  Identities=13%  Similarity=0.082  Sum_probs=40.7

Q ss_pred             CCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHHHHHH
Q 034768           31 GGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFIL   77 (84)
Q Consensus        31 ~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~~Lm~   77 (84)
                      ||.--+.+.+.+.+++.++|.++||....++...+.++|++..++..
T Consensus       135 gG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~  181 (226)
T 3m33_A          135 DAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQM  181 (226)
T ss_dssp             EEEEEEEESSSCCTHHHHHHHHTTCEEEEEEEEEEEEEECSHHHHHH
T ss_pred             CcEEEEeCCcCCHHHHHHHHHHCCCeEEEEEeeeecccCcCHHHHhh
Confidence            45445778889999999999999999999999999999999987543

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=88.87  E-value=0.95  Score=27.17  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             eccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCC
Q 034768            7 FSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTL   57 (84)
Q Consensus         7 FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~   57 (84)
                      ...|.+..+.|||+++...|...        +-+++..++..+|...|...
T Consensus        27 ~~~l~~~~~~el~~~F~~~D~d~--------~G~I~~~El~~~l~~lg~~~   69 (100)
T 2lv7_A           27 PVDIPEDELEEIREAFKVFDRDG--------NGFISKQELGTAMRSLGYMP   69 (100)
T ss_dssp             CCCCCGGGHHHHHHHHHHTCSSC--------SSCBCHHHHHHHHHHHTCCC
T ss_pred             cccCCHHHHHHHHHHHHHHcCCC--------CCcCCHHHHHHHHHHhCCCC
Confidence            34577889999999999998652        67899999999999999864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=88.39  E-value=0.16  Score=37.03  Aligned_cols=43  Identities=19%  Similarity=0.097  Sum_probs=35.7

Q ss_pred             cCCCCCHHHHHHHHHhcCCCCc-eEEeeeeEEEcCCHHHHHHHh
Q 034768           37 VSPLAQVRDAGNLLTRAGFTLP-SVDVDQYTVKYNSGNLFILFY   79 (84)
Q Consensus        37 VnpF~~~~di~~aL~~aGF~~~-vvd~e~i~~~Y~~~~~Lm~~~   79 (84)
                      ...+.+.+++.++|+++||..+ +++.+.+++.|+++..+|++.
T Consensus       225 ~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~l~~~  268 (383)
T 4fsd_A          225 LGGALYLEDFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDV  268 (383)
T ss_dssp             CTTCCBHHHHHHHHHHTTCCCEEEEEEEEECCCCHHHHTTSTTC
T ss_pred             cccCCCHHHHHHHHHHCCCceEEEEeccccccCCHhHHHHhcCC
Confidence            3466788999999999999877 677788888899888887764

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=85.64  E-value=0.81  Score=34.48  Aligned_cols=57  Identities=5%  Similarity=-0.003  Sum_probs=38.6

Q ss_pred             eccCCcchH--H-----HHHHHHHHHHhhh-----cCCCCCCcCCCCCHHHHHHHHHhcC-CCCceEEee
Q 034768            7 FSNLTVLMT--R-----EVRIACTVAQMER-----EGGISPRVSPLAQVRDAGNLLTRAG-FTLPSVDVD   63 (84)
Q Consensus         7 FStlg~~TL--~-----ELr~Aw~~vd~~~-----~~g~~phVnpF~~~~di~~aL~~aG-F~~~vvd~e   63 (84)
                      ++++|.++.  .     +|.++|...-.+.     .-....+.+-|++.+++..+++++| |.+..++.-
T Consensus       223 l~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~  292 (384)
T 2efj_A          223 LTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF  292 (384)
T ss_dssp             EEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred             EEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence            466777777  4     9999998542210     0001256788999999999999985 766555443

>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A

Probab=82.57  E-value=0.03  Score=38.32  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=44.3

Q ss_pred             cccceeccC-------CcchHHHHHHHHHHHHhhhcCCCC-CCcCCCCCHHHHHHHHHhcC
Q 034768            2 TYVTDFSNL-------TVLMTREVRIACTVAQMEREGGIS-PRVSPLAQVRDAGNLLTRAG   54 (84)
Q Consensus         2 ~~~~~FStl-------g~~TL~ELr~Aw~~vd~~~~~g~~-phVnpF~~~~di~~aL~~aG   54 (84)
                      .||+||++.       +.+.+-.-++||-.+++...|+.+ +.+.||.+..+.....++-|
T Consensus        71 iyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~G  131 (175)
T 2hpu_A           71 IYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEG  131 (175)
T ss_dssp             EEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTE
T ss_pred             EEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcC
Confidence            489999983       345677888998888887778888 89999999999999988765

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=80.29  E-value=5  Score=22.12  Aligned_cols=43  Identities=21%  Similarity=0.180  Sum_probs=34.8

Q ss_pred             ccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768            8 SNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus         8 Stlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      +.|.+..+.+|++++...|...        +-+++..++..+|...|....
T Consensus         6 ~~l~~~~~~~l~~~F~~~D~d~--------~G~I~~~el~~~l~~~g~~~~   48 (86)
T 1j7q_A            6 RALGPEEKDECMKIFDIFDRNA--------ENIAPVSDTMDMLTKLGQTYT   48 (86)
T ss_dssp             CCCSSTHHHHHHHHHHHHSTTT--------TSCBCHHHHHHHHHHTSCCCS
T ss_pred             ccCCHHHHHHHHHHHHHhCCCC--------CCcCcHHHHHHHHHHHcCCCC
Confidence            3466788999999999998652        457899999999999887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	93.6
d2hpua1	126	NosL {Achromobacter cycloclastes [TaxId: 223]}	91.39
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	88.1
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	87.36
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	86.58
d3bz6a2	84	Hypothetical protein PSPTO2686 {Pseudomonas syring	84.94
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	84.11
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	82.24
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	82.04
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	80.48
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	80.43

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=93.60  E-value=0.065  Score=33.95  Aligned_cols=63  Identities=14%  Similarity=-0.029  Sum_probs=40.5

Q ss_pred             cceeccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCCHH
Q 034768            4 VTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGN   73 (84)
Q Consensus         4 ~~~FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~~~   73 (84)
                      +.|++.-.......+.+.+......      .|. ++.+..++.++|+++||....+........|++..
T Consensus       116 i~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~  178 (231)
T d1vl5a_         116 LVDNSAPENDAFDVFYNYVEKERDY------SHH-RAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWC  178 (231)
T ss_dssp             EEEEEBCSSHHHHHHHHHHHHHHCT------TCC-CCCBHHHHHHHHHHHTCEEEEEEEEEEEEEHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhccc------Ccc-cCCCHHHHHHHHHHCCCEEEEEEEeecCCchHHHH
Confidence            3556655555566666655554332      565 56688999999999999776555555555555433

>d2hpua1 d.357.1.1 (A:35-160) NosL {Achromobacter cycloclastes [TaxId: 223]}

class: Alpha and beta proteins (a+b)
fold: NosL/MerB-like
superfamily: NosL/MerB-like
family: NosL-like
domain: NosL
species: Achromobacter cycloclastes [TaxId: 223]

Probab=91.39  E-value=0.0018  Score=40.97  Aligned_cols=62  Identities=19%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             cccceeccC-------CcchHHHHHHHHHHHHhhhcCCCC-CCcCCCCCHHHHHHHHHhcCCCCceEEeeee
Q 034768            2 TYVTDFSNL-------TVLMTREVRIACTVAQMEREGGIS-PRVSPLAQVRDAGNLLTRAGFTLPSVDVDQY   65 (84)
Q Consensus         2 ~~~~~FStl-------g~~TL~ELr~Aw~~vd~~~~~g~~-phVnpF~~~~di~~aL~~aGF~~~vvd~e~i   65 (84)
                      .||||+++.       +++.+-+-++||-.+++...|+.+ +-+.||.+.++...-.++-|=  .++.-+.|
T Consensus        37 iyV~D~~s~~~~~~~p~~~~~i~A~~A~yV~gs~~~gpMg~~~l~~F~~~~dA~~F~~~~GG--~v~~f~ei  106 (126)
T d2hpua1          37 IYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG--QVLALADI  106 (126)
T ss_dssp             EEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE--EEEEGGGC
T ss_pred             EEEEccccccccccCCCCCccEECCeeEEEECCCCCcCCCCccccCcCCHHHHHHHHHHhCC--EEeeHHHC
Confidence            499999986       468888889999888888888876 578899999999999988764  24444443

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.10  E-value=0.24  Score=26.93  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             ccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768            8 SNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus         8 Stlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      |.|.+.-+.|||+++...|...        +-+++..++..+|...|....
T Consensus         2 ~~lt~eqi~el~~~F~~~D~d~--------~G~I~~~el~~~l~~~g~~~t   44 (77)
T d1f54a_           2 SNLTEEQIAEFKEAFALFDKDN--------NGSISSSELATVMRSLGLSPS   44 (77)
T ss_dssp             CCCCHHHHHHHHHHHHHTCTTC--------SSEEEHHHHHHHHHHHTCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCC--------CCeEChHHHHHHHHHhCCCCC
Confidence            4577888999999999998652        678899999999999998654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=87.36  E-value=0.65  Score=29.47  Aligned_cols=61  Identities=8%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             cceeccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCceEEeeeeEEEcCC
Q 034768            4 VTDFSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNS   71 (84)
Q Consensus         4 ~~~FStlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~vvd~e~i~~~Y~~   71 (84)
                      ++|++......+.+..+.+......      .|+++ .+..++..++..+||....++.-.....+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~  177 (234)
T d1xxla_         117 LVDHYAPEDPVLDEFVNHLNRLRDP------SHVRE-SSLSEWQAMFSANQLAYQDIQKWNLPIQYDS  177 (234)
T ss_dssp             EEEECBCSSHHHHHHHHHHHHHHCT------TCCCC-CBHHHHHHHHHHTTEEEEEEEEEEEEEEHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHHhhCCC------ccccc-CCHHHHHHHHHHCCCceeEEEEeeCccCHHH
Confidence            5677766666666666666555433      56655 4889999999999998877666555555554

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=86.58  E-value=0.24  Score=26.78  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768           10 LTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus        10 lg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      |.+.-+.|||+++...|...        +-+++..++..+|...|+...
T Consensus         2 Ls~eei~el~~~F~~~D~d~--------~G~I~~~el~~~l~~~g~~~s   42 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDG--------DGTITTKELGTVMRSLGQNPT   42 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTS--------SSEEEGGGHHHHHHHTTCCCC
T ss_pred             cCHHHHHHHHHHHHHHcCCC--------CceEeHHHHHHHHHHhCCCCC
Confidence            45677899999999999652        678888999999999998644

>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PSPTO2686-like
domain: Hypothetical protein PSPTO2686
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.94  E-value=0.53  Score=27.44  Aligned_cols=30  Identities=17%  Similarity=0.154  Sum_probs=24.5

Q ss_pred             CcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHh
Q 034768           11 TVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTR   52 (84)
Q Consensus        11 g~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~   52 (84)
                      ||.|..|||.     .       +.+.++|.|.+++...|.+
T Consensus        22 GpQT~GELRt-----R-------s~Rm~~F~dv~~Ve~~L~~   51 (84)
T d3bz6a2          22 GPQTVSELLT-----R-------SNRMHDFEDSEQVVHQLER   51 (84)
T ss_dssp             CSBCHHHHHH-----H-------HTTTSCCSSHHHHHHHHHH
T ss_pred             CCCChHHHHH-----H-------HhhccccCCHHHHHHHHHH
Confidence            8999999993     1       2788999999999887764

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.11  E-value=0.56  Score=27.58  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             ccCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768            8 SNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus         8 Stlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      |+|.+.=+.|||++|...|...        +-.++..++..+|...|+...
T Consensus         2 ~~ls~~~i~~l~~~F~~~D~d~--------~G~i~~~e~~~~l~~~g~~~~   44 (146)
T d1lkja_           2 SNLTEEQIAEFKEAFALFDKDN--------NGSISSSELATVMRSLGLSPS   44 (146)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSS--------SSEEEHHHHHHHHHHHTCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC--------CCcEeHHHHHHHHHhcCCCCC
Confidence            5678889999999999998653        346788999999999998643

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=82.24  E-value=1.6  Score=23.96  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=34.9

Q ss_pred             cCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768            9 NLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus         9 tlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      -|.+..+.|+|+++...|...       -+-.++..++..+|...|....
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~-------~~G~I~~~el~~~l~~lg~~~t   50 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGA-------EDGSISTKELGKVMRMLGQNPT   50 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTC-------TTSSBCHHHHHHHHHHTTCCCC
T ss_pred             hCCHHHHHHHHHHHHHHcCcC-------CCCeEeHHHHHHHHHHcCCCCC
Confidence            467788999999999998641       1357999999999999998653

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.04  E-value=0.9  Score=23.52  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768           16 REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus        16 ~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      .||++|+...|..        =+-+++..++..+|...|....
T Consensus         1 Eel~~aF~~fD~~--------~~G~I~~~el~~~l~~~g~~~~   35 (61)
T d2fcea1           1 EDFVKAFQVFDKE--------STGKVSVGDLRYMLTGLGEKLT   35 (61)
T ss_dssp             HHHHHHHHHHCTT--------CCSCEEHHHHHHHHHHTTCCCC
T ss_pred             ChHHHHHHHHCCC--------CCCeEeHHHHHHHHHHcCCCCC
Confidence            3899999999854        2678899999999999887654

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=80.48  E-value=1  Score=24.17  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             chHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768           13 LMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus        13 ~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      +|-.|||++|...|...        +-+++..++..+|...|....
T Consensus         6 d~~e~l~~~F~~~D~d~--------~G~I~~~el~~~l~~~g~~~~   43 (77)
T d1oqpa_           6 DSREEILKAFRLFDDDN--------SGTITIKDLRRVAKELGENLT   43 (77)
T ss_dssp             SHHHHHHHHHHHHCTTC--------SSSEEHHHHHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHHHHcCCC--------CCEechHHHHHHHHHhCCCCC
Confidence            67889999999998652        578999999999999887654

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.43  E-value=1.1  Score=24.42  Aligned_cols=42  Identities=14%  Similarity=0.149  Sum_probs=34.7

Q ss_pred             cCCcchHHHHHHHHHHHHhhhcCCCCCCcCCCCCHHHHHHHHHhcCCCCc
Q 034768            9 NLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLP   58 (84)
Q Consensus         9 tlg~~TL~ELr~Aw~~vd~~~~~g~~phVnpF~~~~di~~aL~~aGF~~~   58 (84)
                      -|.+.-+.|||+++...|...        +-.++..++..+|...|+...
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~--------~G~I~~~el~~~l~~~g~~~s   48 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADG--------GGDISTKELGTVMRMLGQNPT   48 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTC--------SSEECHHHHHHHHHHTTCCCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCC--------CCeEchhHHHHHHHHcCCCCC
Confidence            356777899999999998652        567899999999999998754