Citrus Sinensis ID: 034836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGTLS
Secondary Structure (PSIPRED)
cHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHccccHHHHHcHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHEEccccccHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATkrkagttlIVDCYFYSGVVFASAKGIDVEWCKAHwaagsrfgtls
Flexible Loop (DISEMBL)
MISAYFRISHTWMITQFISSLVRIAGRRVMETkwkatkrkagttlivDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGTLS
Low Complexity Region (SEG)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGTLS
Disordered region (IsUnstruct)
***AYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSR*****
Disordered Region (DISOPRED)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFG***
Disordered Region (DISEMBL)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGTLS
Disordered Region (DISPRO)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAG*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGTLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q54GN2	222	Thymidylate kinase OS=Dic	yes	no	0.707	0.261	0.328	0.0002

>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 13  MITQFISSLVRIAGRRVM----ETKWKATKR-----KAGTTLIVDCYFYSGVVFASAKGI 63
           +I Q++ +   +  R +       +W+A          GT ++VD Y YSGV +++AKGI
Sbjct: 66  IINQYLQNATNMDDRALHLLFSSNRWEARDSILELLNNGTNIVVDRYSYSGVAYSAAKGI 125

Query: 64  DVEWCKA 70
           D +WC A
Sbjct: 126 DFDWCYA 132

Catalyzes the conversion of dTMP to dTDP.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
357442919	263	Thymidylate kinase [Medicago truncatula]	0.756	0.235	0.493	2e-07
224055681	222	predicted protein [Populus trichocarpa]	0.792	0.292	0.513	3e-07
225452175	260	PREDICTED: thymidylate kinase [Vitis vin	0.524	0.165	0.604	3e-07
388518205	263	unknown [Medicago truncatula]	0.756	0.235	0.48	3e-07
30697228	224	protein ZEU1 (ZEUS1) [Arabidopsis thalia	0.756	0.276	0.493	4e-07
357452915	263	Thymidylate kinase [Medicago truncatula]	0.756	0.235	0.48	4e-07
3493131	188	thymidylate kinase, partial [Arabidopsis	0.756	0.329	0.493	5e-07
255536995	264	thymidylate kinase, putative [Ricinus co	0.707	0.219	0.447	1e-06
145334853	271	protein ZEU1 (ZEUS1) [Arabidopsis thalia	0.756	0.228	0.493	1e-06
21553651	263	thymidylate kinase-like protein [Arabido	0.756	0.235	0.493	1e-06

>gi|357442919|ref|XP_003591737.1| Thymidylate kinase [Medicago truncatula] gi|355480785|gb|AES61988.1| Thymidylate kinase [Medicago truncatula]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)

Query: 1   MISAYFRIS-----HTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY   +     HT      + S  R   R +METK K+     GTTLIVD Y YSGV
Sbjct: 105 MISAYLTNASQLDDHT---IHLLFSANRWEKRSLMETKLKS-----GTTLIVDRYSYSGV 156

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D++WCKA
Sbjct: 157 AFSSAKGLDIDWCKA 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055681|ref|XP_002298600.1| predicted protein [Populus trichocarpa] gi|222845858|gb|EEE83405.1| predicted protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 7/72 (9%)

Query: 1   MISAYF-RISHTWMIT-QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFA 58
           MISAY    SH    T   + S  R   R +MET+ K      GTTL+VD Y YSGV F+
Sbjct: 64  MISAYLSNKSHLDDRTIHLLFSANRWEKRSLMETQLKN-----GTTLVVDRYSYSGVAFS 118

Query: 59  SAKGIDVEWCKA 70
           SAKG+D+EWCKA
Sbjct: 119 SAKGLDIEWCKA 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452175|ref|XP_002264926.1| PREDICTED: thymidylate kinase [Vitis vinifera] gi|296090257|emb|CBI40076.3| unnamed protein product [Vitis vinifera]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 34/48 (70%), Gaps = 5/48 (10%)

Query: 23  RIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
           R   R +METK +      GTTLIVD Y YSGV F+SAKG+D+EWCKA
Sbjct: 121 RWEKRSLMETKLRT-----GTTLIVDRYSYSGVAFSSAKGLDIEWCKA 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518205|gb|AFK47164.1| unknown [Medicago truncatula]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)

Query: 1   MISAYFRIS-----HTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY   +     HT      + S  R   R +METK K+     GTTLIVD Y YSGV
Sbjct: 105 MISAYLTNASQLDDHT---IHLLFSANRWEKRSLMETKLKS-----GTTLIVDRYSYSGV 156

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D++WCK+
Sbjct: 157 AFSSAKGLDIDWCKS 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697228|ref|NP_568907.2| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gi|332009805|gb|AED97188.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 1   MISAYFR-----ISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY         HT      + S  R   R +ME K K      GTTLIVD Y YSGV
Sbjct: 66  MISAYLSNKSQLDDHT---IHLLFSANRWEKRSLMEEKLKT-----GTTLIVDRYSYSGV 117

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D+EWCKA
Sbjct: 118 AFSSAKGLDIEWCKA 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452915|ref|XP_003596734.1| Thymidylate kinase [Medicago truncatula] gi|355485782|gb|AES66985.1| Thymidylate kinase [Medicago truncatula]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)

Query: 1   MISAYFRIS-----HTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY   +     HT      + S  R   R +METK K+     GTTLIVD Y YSGV
Sbjct: 105 MISAYLTNASQLDDHT---IHLLFSANRWEKRSLMETKLKS-----GTTLIVDRYSYSGV 156

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D++WCK+
Sbjct: 157 AFSSAKGLDIDWCKS 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3493131|gb|AAC33288.1| thymidylate kinase, partial [Arabidopsis thaliana]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 1   MISAYFR-----ISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY         HT      + S  R   R +ME K K      GTTLIVD Y YSGV
Sbjct: 41  MISAYLSNKSQLDDHT---IHLLFSANRWEKRSLMEEKLKT-----GTTLIVDRYSYSGV 92

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D+EWCKA
Sbjct: 93  AFSSAKGLDIEWCKA 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536995|ref|XP_002509564.1| thymidylate kinase, putative [Ricinus communis] gi|223549463|gb|EEF50951.1| thymidylate kinase, putative [Ricinus communis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 9/67 (13%)

Query: 13  MITQFISSLVRIAGRRV----METKWKA-----TKRKAGTTLIVDCYFYSGVVFASAKGI 63
           MI+ ++S+  ++  R +       +W+      TK K+GTTLIVD Y YSGV F++AKG+
Sbjct: 105 MISAYLSNQSQLDDRTIHLLYSANRWEKNSLMETKLKSGTTLIVDRYSYSGVAFSAAKGL 164

Query: 64  DVEWCKA 70
           D EWCKA
Sbjct: 165 DFEWCKA 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334853|ref|NP_001078772.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gi|332009807|gb|AED97190.1| protein ZEU1 (ZEUS1) [Arabidopsis thaliana]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 1   MISAYFR-----ISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY         HT      + S  R   R +ME K K      GTTLIVD Y YSGV
Sbjct: 113 MISAYLSNKSQLDDHT---IHLLFSANRWEKRSLMEEKLKT-----GTTLIVDRYSYSGV 164

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D+EWCKA
Sbjct: 165 AFSSAKGLDIEWCKA 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553651|gb|AAM62744.1| thymidylate kinase-like protein [Arabidopsis thaliana]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 1   MISAYFR-----ISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGV 55
           MISAY         HT      + S  R   R +ME K K      GTTLIVD Y YSGV
Sbjct: 105 MISAYLSNKSQLDDHT---IHLLFSANRWEKRSLMEEKLKT-----GTTLIVDRYSYSGV 156

Query: 56  VFASAKGIDVEWCKA 70
            F+SAKG+D+EWCKA
Sbjct: 157 AFSSAKGLDIEWCKA 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2148283	271	ZEU1 "ZEUS1" [Arabidopsis thal	0.817	0.247	0.485	2.6e-09
FB|FBgn0034299	225	CG5757 [Drosophila melanogaste	0.353	0.128	0.586	2.3e-05
DICTYBASE|DDB_G0290033	222	dtymk "thymidylate kinase" [Di	0.353	0.130	0.586	2.9e-05
POMBASE|SPCC70.07c	210	tmp1 "thymidylate kinase Tmp1"	0.353	0.138	0.551	7e-05
UNIPROTKB|F1PAE8	132	DTYMK "Uncharacterized protein	0.390	0.242	0.545	0.00057

TAIR|locus:2148283 ZEU1 "ZEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 34/70 (48%), Positives = 43/70 (61%)

Query:     1 MISAYFRISHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA 60
             MISAY  +S+   +      L+  A R    +  +  K K GTTLIVD Y YSGV F+SA
Sbjct:   113 MISAY--LSNKSQLDDHTIHLLFSANRWEKRSLMEE-KLKTGTTLIVDRYSYSGVAFSSA 169

Query:    61 KGIDVEWCKA 70
             KG+D+EWCKA
Sbjct:   170 KGLDIEWCKA 179

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0034299 CG5757 [Drosophila melanogaster (taxid:7227)]

 Score = 103 (41.3 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query:    42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
             GTTL+VD Y +SGV +++AKG+D +WC A
Sbjct:   105 GTTLVVDRYSFSGVAYSAAKGLDFDWCYA 133

GO:0004798 "thymidylate kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0290033 dtymk "thymidylate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 102 (41.0 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query:    42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
             GT ++VD Y YSGV +++AKGID +WC A
Sbjct:   104 GTNIVVDRYSYSGVAYSAAKGIDFDWCYA 132

GO:0006233 "dTDP biosynthetic process" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISS

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

GO:0006235 "dTTP biosynthetic process" evidence=IEA;ISS

GO:0006227 "dUDP biosynthetic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPCC70.07c tmp1 "thymidylate kinase Tmp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 98 (39.6 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 16/29 (55%), Positives = 23/29 (79%)

Query:    42 GTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
             G T I+D Y +SG+ F++AKG+D EWCK+
Sbjct:    91 GVTCILDRYAFSGIAFSAAKGLDWEWCKS 119

GO:0004798 "thymidylate kinase activity" evidence=IGI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006227 "dUDP biosynthetic process" evidence=IGI

GO:0006233 "dTDP biosynthetic process" evidence=IGI

GO:0006235 "dTTP biosynthetic process" evidence=IGI

GO:0009041 "uridylate kinase activity" evidence=IGI

UNIPROTKB|F1PAE8 DTYMK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:    38 KRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCK 69
             K   G TLIVD Y +SGV F SAK    ++WCK
Sbjct:     6 KLSQGITLIVDRYAFSGVAFTSAKEDFSLDWCK 38


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.133   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.47    28
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  120 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.17u 0.11s 8.28t   Elapsed:  00:00:00
  Total cpu time:  8.17u 0.11s 8.28t   Elapsed:  00:00:00
  Start:  Fri May 10 02:13:16 2013   End:  Fri May 10 02:13:16 2013

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0050145 "nucleoside phosphate kinase activity" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
PLN02924	220	PLN02924, PLN02924, thymidylate kinase	1e-12

>gnl|CDD|178512 PLN02924, PLN02924, thymidylate kinase

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 9/73 (12%)

Query: 1   MISAYFRISHTWMITQFISSLV---RIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVF 57
           MISAY   + + +  + I  L    R   R +ME K K+     GTTL+VD Y YSGV F
Sbjct: 62  MISAYLS-NKSQLDDRAIHLLFSANRWEKRSLMERKLKS-----GTTLVVDRYSYSGVAF 115

Query: 58  ASAKGIDVEWCKA 70
           ++AKG+D+EWCKA
Sbjct: 116 SAAKGLDLEWCKA 128

Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.95
PLN02924	220	thymidylate kinase	99.81
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.78
PRK13976	209	thymidylate kinase; Provisional	99.76
PRK07933	213	thymidylate kinase; Validated	99.71
PRK13974	212	thymidylate kinase; Provisional	99.67
PRK13973	213	thymidylate kinase; Provisional	99.66
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.63
PRK13975	196	thymidylate kinase; Provisional	99.41
PRK00698	205	tmk thymidylate kinase; Validated	99.29
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.26
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.91
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.75
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.48
PHA03132	580	thymidine kinase; Provisional	97.93

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=8.5e-29  Score=183.89  Aligned_cols=72  Identities=36%  Similarity=0.611  Sum_probs=70.0

Q ss_pred             Chhhhhcc-----cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcC
Q 034836            1 MISAYFRI-----SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAG   75 (82)
Q Consensus         1 lI~~yL~~-----~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl   75 (82)
                      +|+.||++     +|++   |||||||||+++++|++.|     .+|++||||||.|||+||+.|||++++||++||.||
T Consensus        51 ~i~~YL~k~~dl~d~~i---HLlFSAnRwe~~~~i~e~l-----~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL  122 (208)
T KOG3327|consen   51 LIDGYLRKKSDLPDHTI---HLLFSANRWEHVSLIKEKL-----AKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGL  122 (208)
T ss_pred             HHHHHHHhccCCcHHHH---HHHhccchhhHHHHHHHHH-----hcCCeEEEecceecchhhhhhcCCCcchhhCCccCC
Confidence            58999998     8999   9999999999999999999     999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 034836           76 SRFGT   80 (82)
Q Consensus        76 ~r~~~   80 (82)
                      |||+.
T Consensus       123 ~KPDl  127 (208)
T KOG3327|consen  123 PKPDL  127 (208)
T ss_pred             CCCCe
Confidence            99985

>PLN02924 thymidylate kinase

Probab=99.81  E-value=7.9e-20  Score=133.44  Aligned_cols=71  Identities=45%  Similarity=0.661  Sum_probs=64.0

Q ss_pred             hhhhhcc-----cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCC
Q 034836            2 ISAYFRI-----SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGS   76 (82)
Q Consensus         2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~   76 (82)
                      |.++|.+     +.+.   ++||+|||++|+..|+|+|     ++|.+||||||.+|++|||+++|++.+|+.+.+.++|
T Consensus        63 ir~~l~~~~~~~~~~~---~llf~adR~~~~~~I~pal-----~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~  134 (220)
T PLN02924         63 ISAYLSNKSQLDDRAI---HLLFSANRWEKRSLMERKL-----KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLP  134 (220)
T ss_pred             HHHHHhCCCCCCHHHH---HHHHHHHHHHHHHHHHHHH-----HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCC
Confidence            4455543     5666   9999999999998999999     9999999999999999999999999999999999999


Q ss_pred             CCCC
Q 034836           77 RFGT   80 (82)
Q Consensus        77 r~~~   80 (82)
                      +|+-
T Consensus       135 ~PDl  138 (220)
T PLN02924        135 APDL  138 (220)
T ss_pred             CCCE
Confidence            9973

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.78  E-value=5.3e-19  Score=129.61  Aligned_cols=63  Identities=19%  Similarity=0.341  Sum_probs=56.8

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhh-ccCCCHHHHHhHhhcCC---CCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFAS-AKGIDVEWCKAHWAAGS---RFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~-akgl~~~w~~~~d~gl~---r~~   79 (82)
                      +.+.   +|||+|||++|+. .|+|+|     ++|.+||||||.+|++|||+ ++|++++|+.+.+.-.|   +|+
T Consensus        62 ~~~e---~lLfaadR~~h~~~~i~pal-----~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD  129 (208)
T COG0125          62 PKAE---ALLFAADRAQHLEEVIKPAL-----KEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPD  129 (208)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHhh-----cCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCC
Confidence            5666   9999999999987 799999     99999999999999999997 58999999998876666   776

>PRK13976 thymidylate kinase; Provisional

Probab=99.76  E-value=1.8e-18  Score=125.31  Aligned_cols=70  Identities=11%  Similarity=0.094  Sum_probs=59.0

Q ss_pred             hhhhhcc-----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh-
Q 034836            2 ISAYFRI-----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA-   73 (82)
Q Consensus         2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~-   73 (82)
                      |.++|.+     +.+.   +|||+|||++|++ .|+|+|     ++|.+||||||++|++|||++ +|++.+|+...+. 
T Consensus        48 ir~~l~~~~~~~~~~~---~llf~a~R~~~~~~~I~p~l-----~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~  119 (209)
T PRK13976         48 VRGLLLSLKNLDKISE---LLLFIAMRREHFVKVILPAL-----LQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDL  119 (209)
T ss_pred             HHHHHcCCcCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHH
Confidence            4555543     4555   9999999999987 699999     999999999999999999995 7999999998875 


Q ss_pred             -cCCCCC
Q 034836           74 -AGSRFG   79 (82)
Q Consensus        74 -gl~r~~   79 (82)
                       +.|+|+
T Consensus       120 ~~~~~PD  126 (209)
T PRK13976        120 VVDKYPD  126 (209)
T ss_pred             hhCCCCC
Confidence             346776

>PRK07933 thymidylate kinase; Validated

Probab=99.71  E-value=1.1e-17  Score=120.77  Aligned_cols=60  Identities=20%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc------CCCHHHHHhHhh---cCCCCC
Q 034836           15 TQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK------GIDVEWCKAHWA---AGSRFG   79 (82)
Q Consensus        15 ~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak------gl~~~w~~~~d~---gl~r~~   79 (82)
                      ++|||+|||++|.+.|+|+|     ++|.+||||||.+|++|||+++      +.+.+|+...+.   ++|+|+
T Consensus        66 ~~llf~a~R~~~~~~I~p~l-----~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PD  134 (213)
T PRK07933         66 MATLFALDRAGARDELAGLL-----AAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPD  134 (213)
T ss_pred             HHHHHhhhhhhhHHHHHHHH-----hCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCC
Confidence            39999999999998999999     9999999999999999999875      256889988876   678887

>PRK13974 thymidylate kinase; Provisional

Probab=99.67  E-value=1.6e-16  Score=113.51  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=52.5

Q ss_pred             HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836           16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~   79 (82)
                      +|||+|||++|++ .|+|+|     .+|.+||||||.+|++|||+. +|++.+|+.+.+.   +.++|+
T Consensus        73 ~llf~adr~~~~~~~i~~~l-----~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd  136 (212)
T PRK13974         73 LLLYAADRAQHVSKIIRPAL-----ENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPD  136 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCC
Confidence            9999999999998 599999     999999999999999999985 8999999988875   334564

>PRK13973 thymidylate kinase; Provisional

Probab=99.66  E-value=2.5e-16  Score=112.58  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~   79 (82)
                      +++.   +|||+|||++|+. .|+|+|     ++|.+||||||++|++|||++ +|++.+|+...+.   ++|+|+
T Consensus        63 ~~~~---~ll~~a~r~~~~~~~i~~~l-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD  130 (213)
T PRK13973         63 PRME---ALLFAAARDDHVEEVIRPAL-----ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPD  130 (213)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCC
Confidence            4555   9999999999997 699999     999999999999999999998 5799999887764   567776

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.63  E-value=2.9e-16  Score=108.11  Aligned_cols=70  Identities=23%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             hhhhhcc-----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccC-CCHHHHHhHhhc
Q 034836            2 ISAYFRI-----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKG-IDVEWCKAHWAA   74 (82)
Q Consensus         2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akg-l~~~w~~~~d~g   74 (82)
                      |.++|.+     +.+.   ++||+|||.++.. .|+|+|     ++|.+||||||.+|++|||++.+ ++.+|+......
T Consensus        42 ir~~l~~~~~~~~~~~---~~l~~a~r~~~~~~~I~~~l-----~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~  113 (186)
T PF02223_consen   42 IRELLRSESELSPEAE---ALLFAADRAWHLARVIRPAL-----KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKD  113 (186)
T ss_dssp             HHHHHHTSSTCGHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHH
T ss_pred             HHHHHhcccCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHH
Confidence            4455552     5677   9999999988776 799999     99999999999999999999965 899999887776


Q ss_pred             CC--CCC
Q 034836           75 GS--RFG   79 (82)
Q Consensus        75 l~--r~~   79 (82)
                      ++  +|+
T Consensus       114 ~~~~~PD  120 (186)
T PF02223_consen  114 IFLPKPD  120 (186)
T ss_dssp             HHTTE-S
T ss_pred             hcCCCCC
Confidence            66  776

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK13975 thymidylate kinase; Provisional

Probab=99.41  E-value=1e-12  Score=90.49  Aligned_cols=63  Identities=19%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFGT   80 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~~   80 (82)
                      +.++   +++|+++|+++...|++++     .+ .+||+|||.+|++|||.+.|++.+|+......+++|+.
T Consensus        54 ~~~~---~~~f~~~r~~~~~~i~~~~-----~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~  116 (196)
T PRK13975         54 KETL---ALLFAADRVEHVKEIEEDL-----KK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDL  116 (196)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHH-----cC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCE
Confidence            4556   9999999999999999998     55 57999999999999999999999999888888888873

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.29  E-value=9.1e-12  Score=85.57  Aligned_cols=63  Identities=17%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcC---CCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAG---SRFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl---~r~~   79 (82)
                      +.+.   ++||++||+++.. .|+|++     ++|.+||+|||.+|++|||++. |++.+|+......+   |+|+
T Consensus        62 ~~~~---~~~~~~~r~~~~~~~i~~~l-----~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd  129 (205)
T PRK00698         62 DKTE---LLLFYAARAQHLEEVIKPAL-----ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPD  129 (205)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCC
Confidence            4455   8999999999986 699999     9999999999999999999874 89999999888765   7776

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.26  E-value=1.8e-11  Score=84.19  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhhcCCC--CC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWAAGSR--FG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~gl~r--~~   79 (82)
                      +++.   ++||+++|++... .|++.+     .+|.+||+|||.+|++||+++ ++++.+|+......+++  |+
T Consensus        63 ~~~~---~~l~~~~r~~~~~~~i~~~l-----~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d  129 (195)
T TIGR00041        63 DKAE---ALLFAADRHEHLEDKIKPAL-----AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPD  129 (195)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCC
Confidence            4455   8999999988875 699999     999999999999999999984 78999999988877765  65

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.91  E-value=5e-09  Score=70.53  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             HHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCH---HHHHhHhhcCCCCC
Q 034836           15 TQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDV---EWCKAHWAAGSRFG   79 (82)
Q Consensus        15 ~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~---~w~~~~d~gl~r~~   79 (82)
                      .+++|+++|+++.. .|.|++     ..|.+||||||.+|++||+++. +.+.   +|+.....++++|+
T Consensus        63 ~~~~~~~~r~~~~~~~~~~~~-----~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  127 (200)
T cd01672          63 ELLLFAADRAQHVEEVIKPAL-----ARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPD  127 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCC
Confidence            38999999999987 588888     8999999999999999999874 4444   44455555666665

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.75  E-value=1.2e-08  Score=73.35  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc---cC----CCHHHHHhH----hhcCCCCC
Q 034836           16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA---KG----IDVEWCKAH----WAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a---kg----l~~~w~~~~----d~gl~r~~   79 (82)
                      .++|.++|+++.. .|+|.+     ..|.+||+|||.+|++|||.+   .|    .+.+|..+.    ..++|+|+
T Consensus        74 q~~~~~~R~~~~~~~i~~~l-----~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd  144 (219)
T cd02030          74 QSWMYSSRLLQYSDALEHLL-----STGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPH  144 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----hcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCC
Confidence            4444589999976 699999     999999999999999999864   23    345555443    34457776

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.48  E-value=6.9e-07  Score=61.62  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             HHhHHHhHHHHHHH-HHHHHHHhhhhCCcEEEEeccCchhHHHhhc
Q 034836           16 QFISSLVRIAGRRV-METKWKATKRKAGTTLIVDCYFYSGVVFASA   60 (82)
Q Consensus        16 ~LLFsAdR~e~~~~-I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a   60 (82)
                      .++|.++|+++... +++ +     ++|.+||+|||.+|+++|+..
T Consensus        57 q~~~~~~r~~~~~~~~~~-~-----~~~~~vI~DR~~~S~~~~~~~   96 (193)
T cd01673          57 QLYFLLSRLKQYKDALEH-L-----STGQGVILERSIFSDRVFAEA   96 (193)
T ss_pred             HHHHHHHHHHHHHHHHhh-c-----ccCCceEEEcChhhhHHHHHH
Confidence            77899999999875 555 8     899999999999999999854

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PHA03132 thymidine kinase; Provisional

Probab=97.93  E-value=6.5e-06  Score=68.93  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=31.4

Q ss_pred             HhHHHhHHHHH----HHHHHHHHHhhhhCCcEEEEeccCchhHHHh
Q 034836           17 FISSLVRIAGR----RVMETKWKATKRKAGTTLIVDCYFYSGVVFA   58 (82)
Q Consensus        17 LLFsAdR~e~~----~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq   58 (82)
                      +||.|||++|.    +.|+|.+     ..|.+||||||.+|++||+
T Consensus       335 fl~~adR~~~~~~~~~~i~p~l-----~~g~iVI~DRyi~Ss~avF  375 (580)
T PHA03132        335 FRALATRTRRLVQPESVRRPVA-----PLDNWVLFDRHLLSATVVF  375 (580)
T ss_pred             HHHHHHHHHHHHhhhhhccccc-----cCCCEEEEecCccccHHHH
Confidence            46678999997    3578898     9999999999999999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	2e-05

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Length = 204

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 40  KAGTTLIVDCYFYSGVVFASAKGIDVEWCKA 70
           + G TLIVD Y +SGV +A+AKG  +   K+
Sbjct: 84  EQGITLIVDRYAFSGVAYAAAKGASMTLSKS 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.81
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.81
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.79
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.77
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.75
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.75
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.74
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.72
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.42
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.27
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.03
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.98
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.92
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.73
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.59
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.5
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.4
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.38
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.31
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.23
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.06
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.99
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.73
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.72
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.23
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	93.33
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	91.07
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	88.83

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.81  E-value=2.9e-20  Score=132.85  Aligned_cols=64  Identities=17%  Similarity=0.098  Sum_probs=56.8

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh---hcCCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW---AAGSRFGT   80 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d---~gl~r~~~   80 (82)
                      +++.   +|||+|||++|++ +|+|+|     ++|.+||||||.+|++|||++ +|++.+|+.+.+   .|+|+|+-
T Consensus        67 ~~~e---~lL~~A~R~~~~~~~i~paL-----~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl  135 (213)
T 4tmk_A           67 DKAE---VLMFYAARVQLVETVIKPAL-----ANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDL  135 (213)
T ss_dssp             HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred             hHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCE
Confidence            4566   9999999999997 699999     999999999999999999997 799999997655   47889873

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.81  E-value=3.9e-20  Score=133.07  Aligned_cols=71  Identities=24%  Similarity=0.444  Sum_probs=62.5

Q ss_pred             hhhhhcc------cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccC---CCHHHHHhHh
Q 034836            2 ISAYFRI------SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKG---IDVEWCKAHW   72 (82)
Q Consensus         2 I~~yL~~------~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akg---l~~~w~~~~d   72 (82)
                      |.+||..      +++.   +|||+|||+++++.|+|+|     ++|.+||||||++|++|||+++|   .+++|+.+..
T Consensus        49 ir~~l~~~~~~~~~~~~---~llf~a~R~~~~~~I~paL-----~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~  120 (216)
T 3tmk_A           49 INEYLTDDSFQLSDQAI---HLLFSANRWEIVDKIKKDL-----LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD  120 (216)
T ss_dssp             HHHHHHCTTSCCCHHHH---HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGG
T ss_pred             HHHHHHhcccCCCHHHH---HHHHHHHHHHHHHHHHHHH-----HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHh
Confidence            4556653      4566   9999999999988999999     99999999999999999999875   5799999999


Q ss_pred             hcCCCCCC
Q 034836           73 AAGSRFGT   80 (82)
Q Consensus        73 ~gl~r~~~   80 (82)
                      .++|+|+-
T Consensus       121 ~~~~~PDl  128 (216)
T 3tmk_A          121 VGLLKPDL  128 (216)
T ss_dssp             TTSBCCSE
T ss_pred             hCCCCCCE
Confidence            99999973

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.79  E-value=1.1e-19  Score=128.54  Aligned_cols=63  Identities=21%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~   79 (82)
                      +++.   ++||+|||++|+. .|+|+|     ++|.+||||||.+|++|||++ +|++.+|+.+.+.   +.++|+
T Consensus        59 ~~~~---~lLf~a~R~~~~~~~i~p~l-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD  126 (205)
T 4hlc_A           59 IRTE---AMLFAASRREHLVLKVIPAL-----KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPD  126 (205)
T ss_dssp             HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCC
Confidence            5666   9999999999997 699999     999999999999999999986 8999999988774   778887

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.77  E-value=4.5e-19  Score=126.17  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFGT   80 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~~   80 (82)
                      +++.   +|||+|||++|++ .|+|+|     ++|.+||||||++|++|||++ +|++.+|+...+.   |+|+|+.
T Consensus        66 ~~~~---~llf~a~R~~~~~~~i~p~l-----~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDl  134 (213)
T 4edh_A           66 ADTE---LLLMFAARAQHLAGVIRPAL-----ARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDL  134 (213)
T ss_dssp             HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCE
Confidence            4566   9999999999986 699999     999999999999999999997 7999999988874   7899873

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.75  E-value=1.2e-18  Score=126.14  Aligned_cols=71  Identities=13%  Similarity=0.085  Sum_probs=60.9

Q ss_pred             hhhhhcc----cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh---
Q 034836            2 ISAYFRI----SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW---   72 (82)
Q Consensus         2 I~~yL~~----~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d---   72 (82)
                      |.+++..    +.+.   +|||+|||++|++ .|+|+|     ++|.+||||||.+|++|||++ +|++.+|+.+.+   
T Consensus        75 ir~~l~~~~~~~~~~---~llf~a~R~~~~~~~i~p~l-----~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~  146 (227)
T 3v9p_A           75 LREILLNQPMDLETE---ALLMFAGRREHLALVIEPAL-----ARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV  146 (227)
T ss_dssp             HHHHHHHSCCCHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH
Confidence            4455543    4666   9999999999997 699999     999999999999999999987 799999998887   


Q ss_pred             hcCCCCCC
Q 034836           73 AAGSRFGT   80 (82)
Q Consensus        73 ~gl~r~~~   80 (82)
                      .|+|+|+.
T Consensus       147 ~~~~~PDl  154 (227)
T 3v9p_A          147 QGGFQPDL  154 (227)
T ss_dssp             HTTCCCSE
T ss_pred             hcCCCCCE
Confidence            46799873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.75  E-value=1.7e-18  Score=125.43  Aligned_cols=70  Identities=11%  Similarity=0.030  Sum_probs=59.0

Q ss_pred             hhhhhcc-----cHHHHHHHHhHHHhHHHHHHH-HHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhhc
Q 034836            2 ISAYFRI-----SHTWMITQFISSLVRIAGRRV-METKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWAA   74 (82)
Q Consensus         2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~~-I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~g   74 (82)
                      |.+||..     +++.   +|||+|||++|++. |+|+|     ++|.+||||||.+|++|||++ +|++.+|+...+..
T Consensus        69 ir~~l~~~~~~~~~~e---~llf~a~R~~~~~~~I~paL-----~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~  140 (223)
T 3ld9_A           69 VRNLLFKAQGLDSLSE---LLFFIAMRREHFVKIIKPSL-----MQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDL  140 (223)
T ss_dssp             HHHHHHTCSSCCHHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH-----hcCCeEEEccchhhHHHhccccCCccHHHHHHHHHH
Confidence            4455543     4566   89999999999985 99999     999999999999999999996 79999999888543


Q ss_pred             C--CCCC
Q 034836           75 G--SRFG   79 (82)
Q Consensus        75 l--~r~~   79 (82)
                      .  |+|+
T Consensus       141 ~~~~~PD  147 (223)
T 3ld9_A          141 VIDVYPD  147 (223)
T ss_dssp             HCSSCCS
T ss_pred             hhcCCCC
Confidence            3  7886

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.74  E-value=1.9e-18  Score=125.61  Aligned_cols=64  Identities=11%  Similarity=0.010  Sum_probs=56.8

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFGT   80 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~~   80 (82)
                      +++.   +|||+|||++|++ .|+|+|     ++|.+||||||++|++|||++ +|++.+|+...+.   |+|+|+.
T Consensus        89 ~~~e---~lLf~A~R~~~~~~~I~paL-----~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDl  157 (236)
T 3lv8_A           89 DITE---LLLVYAARVQLVENVIKPAL-----ARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDL  157 (236)
T ss_dssp             HHHH---HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCE
Confidence            4556   9999999999997 699999     999999999999999999998 7999999976654   7899873

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.72  E-value=9.4e-18  Score=117.46  Aligned_cols=63  Identities=14%  Similarity=0.108  Sum_probs=55.7

Q ss_pred             cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHh---HhhcCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKA---HWAAGSRFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~---~d~gl~r~~   79 (82)
                      +++.   +|||+|+|+++++.|+|+|     ++|.+||||||.+|++|||++ +|++.+|+..   ...+.++|+
T Consensus        57 ~~~~---~ll~~a~r~~~~~~I~~~L-----~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PD  123 (197)
T 3hjn_A           57 PKAE---LFLFLASRNLLVTEIKQYL-----SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPD  123 (197)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHH-----TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCS
T ss_pred             hHHH---HHHHHHHHHHHHHHHHHHH-----HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCC
Confidence            5666   9999999999999999999     999999999999999999986 7999999876   345667776

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.42  E-value=5.2e-14  Score=99.92  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=53.8

Q ss_pred             cHHHHHHHHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHH---HHHhHhhcCCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVE---WCKAHWAAGSRFGT   80 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~---w~~~~d~gl~r~~~   80 (82)
                      +.+.   ++||+++|++++. .|+|+|     ++|.+||||||++|++|||++ ++++.+   |+.+...+.++|+.
T Consensus        83 ~~~~---~ll~~a~r~~~~~~~i~~~l-----~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~  151 (229)
T 4eaq_A           83 IRTE---AMLFAASRREHLVLKVIPAL-----KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDL  151 (229)
T ss_dssp             HHHH---HHHHHHHHHHHCCCCCHHHH-----HTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSE
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHH-----HCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCE
Confidence            4556   8999999999986 699999     999999999999999999986 788876   45556667777763

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.27  E-value=1e-11  Score=82.89  Aligned_cols=59  Identities=27%  Similarity=0.360  Sum_probs=53.6

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCC
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~   79 (82)
                      +++|+++|+++++.|.+.+     .+|.+||||||.+|++|||.++|++.+|+.......++|+
T Consensus        65 ~~l~~~~r~~~~~~i~~~l-----~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d  123 (204)
T 2v54_A           65 NLLFCANRWEFASFIQEQL-----EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPD  123 (204)
T ss_dssp             HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCS
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCC
Confidence            8999999999988899999     8999999999999999999888999999988777666776

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.03  E-value=6.3e-10  Score=74.49  Aligned_cols=59  Identities=31%  Similarity=0.519  Sum_probs=52.5

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcCCCCC
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl~r~~   79 (82)
                      .++|+++|+++.+.|.+.+     .+|.+||+|||.+|+++|+++. |++.+|+.....++++|+
T Consensus        72 ~~~~~~~r~~~~~~i~~~l-----~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d  131 (215)
T 1nn5_A           72 HLLFSANRWEQVPLIKEKL-----SQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPD  131 (215)
T ss_dssp             HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCS
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCC
Confidence            7899999999988899999     8999999999999999999876 899999988777766665

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.98  E-value=8.8e-10  Score=73.85  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=52.5

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc-CCCHHHHHhHhhcCCCCC
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK-GIDVEWCKAHWAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak-gl~~~w~~~~d~gl~r~~   79 (82)
                      .++|+++|+++.+.|.+.+     .+|..||+|||.+|+++||.++ +++.+|+...+.++++|+
T Consensus        73 ~~~~~~~~~~~~~~i~~~l-----~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d  132 (212)
T 2wwf_A           73 HLLFSANRWEHMNEIKSLL-----LKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPD  132 (212)
T ss_dssp             HHHHHHHHHTTHHHHHHHH-----HHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCS
T ss_pred             HHHHHHHHHHHHHHHHHHH-----hCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCC
Confidence            7899999999988899999     8899999999999999999887 899999987777776665

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.92  E-value=2.8e-09  Score=70.77  Aligned_cols=59  Identities=20%  Similarity=0.353  Sum_probs=52.1

Q ss_pred             HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhhcCCCCC
Q 034836           16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~gl~r~~   79 (82)
                      .++|+++|+++.. .|.+.+     ++|.+||+|||.+|+++||.++|++.+|+......+++|+
T Consensus        64 ~~~~~~~r~~~~~~~i~~~l-----~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  123 (213)
T 2plr_A           64 SLIHATDFSDRYERYILPML-----KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPD  123 (213)
T ss_dssp             HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCC
Confidence            7899999999886 589999     8999999999999999999778999999998877676665

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.73  E-value=1.8e-09  Score=72.42  Aligned_cols=59  Identities=14%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCC------CHHHHHhHh---hcCCCCC
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGI------DVEWCKAHW---AAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl------~~~w~~~~d---~gl~r~~   79 (82)
                      +++|+++|+++.+.|.+.+     ++|.+||||||.+|+++||++++.      ..+|+....   .++|.|+
T Consensus        67 ~~~~~~~r~~~~~~i~~~l-----~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  134 (214)
T 1gtv_A           67 ATLFALDRAGAVHTIQGLC-----RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPD  134 (214)
T ss_dssp             HHHHHHHHHEEHHHHHHEE-----EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCE
T ss_pred             HHHHHHHHhhhHHHHHHHh-----hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCC
Confidence            8899999999966899999     899999999999999999987532      278888765   3555554

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.59  E-value=2.1e-08  Score=76.64  Aligned_cols=55  Identities=16%  Similarity=-0.009  Sum_probs=43.9

Q ss_pred             HHhHH---HhHHHHHHH-H-----HHHHHHhhhhCCcEEEEeccCchhHHH-hhc----cCCCHHHHHhHhhcC
Q 034836           16 QFISS---LVRIAGRRV-M-----ETKWKATKRKAGTTLIVDCYFYSGVVF-ASA----KGIDVEWCKAHWAAG   75 (82)
Q Consensus        16 ~LLFs---AdR~e~~~~-I-----~~~L~~~~~~~G~~VI~DRY~~S~~AY-q~a----kgl~~~w~~~~d~gl   75 (82)
                      +++|+   ++|.+|++. |     +|++     ++|.+||||||.+|++|| |.+    +|++.+++.+...-+
T Consensus        84 QLlf~a~la~ra~~~~~~i~~~~~~pal-----~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l~~~~  152 (334)
T 1p6x_A           84 QSRFTTPYLILHDHTCTLFGGNSLQRGT-----QPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATL  152 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCEEEECCCS-----CCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTC
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhccCccc-----cCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHc
Confidence            46787   589999974 5     3899     999999999999999984 433    379998888777643

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.50  E-value=1.5e-09  Score=76.70  Aligned_cols=56  Identities=13%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             HHHhHHHhHHH------HHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCC-----HHHHHhHhhcC
Q 034836           15 TQFISSLVRIA------GRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGID-----VEWCKAHWAAG   75 (82)
Q Consensus        15 ~~LLFsAdR~e------~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~-----~~w~~~~d~gl   75 (82)
                      .++||++.|++      |+. .|+|+|     ..|.+||||||.+|+++||++ .+.+     .+|+......+
T Consensus       101 ~~~l~~~~r~~~~~~~~~l~~~i~~~l-----~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~  169 (263)
T 1p5z_B          101 TYACLSRIRAQLASLNGKLKDAEKPVL-----FFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQF  169 (263)
T ss_dssp             HHHHHHHHHHHHHHHTSGGGGSSSCEE-----EEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCce-----EEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Confidence            35668888887      554 578888     899999999999999999986 3443     68887766543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.40  E-value=1.4e-08  Score=70.80  Aligned_cols=56  Identities=2%  Similarity=-0.051  Sum_probs=44.9

Q ss_pred             hHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHh--------hcCCCCC
Q 034836           18 ISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHW--------AAGSRFG   79 (82)
Q Consensus        18 LFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d--------~gl~r~~   79 (82)
                      .+..+|.+|+. .|+|.+     ..|..|+||||.+|++|||++ |++.+|+...+        .+.++|+
T Consensus        84 ~l~~~~~~~~~~~i~~~l-----~~~r~v~~dry~~s~~ayq~~-~l~~~~~~~~~~~~~~~~~~~~~~pD  148 (230)
T 2vp4_A           84 VTLTMLQSHTAPTNKKLK-----IMERSIFSARYCFVENMRRNG-SLEQGMYNTLEEWYKFIEESIHVQAD  148 (230)
T ss_dssp             HHHHHHHHHHCCCCSSEE-----EEESCHHHHHHTHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHBCCCCS
T ss_pred             HHHHHHHHHHhccccCce-----eecCCccccHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHhhcCCCC
Confidence            33457888876 588888     889999999999999999985 89998887666        2567776

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.38  E-value=8.1e-07  Score=58.07  Aligned_cols=52  Identities=21%  Similarity=0.272  Sum_probs=44.5

Q ss_pred             HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHh
Q 034836           16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHW   72 (82)
Q Consensus        16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d   72 (82)
                      .++|.++|.++++ .+.|.+     ++|..||+|||.+|+++|++. ++++.+|+.+..
T Consensus        61 ~~~~~~~~~~~l~~~i~~~l-----~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~  114 (195)
T 2pbr_A           61 LLLFEASRSKLIEEKIIPDL-----KRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLN  114 (195)
T ss_dssp             HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----hCCCEEEECcchhHHHHHccccCCCCHHHHHHHH
Confidence            6778899999886 589999     899999999999999999974 788888876644

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.31  E-value=3.3e-07  Score=69.94  Aligned_cols=36  Identities=19%  Similarity=0.095  Sum_probs=30.0

Q ss_pred             hCCcEEEEeccCchhH-HHhhc----cCCCHHHHHhHhhcC
Q 034836           40 KAGTTLIVDCYFYSGV-VFASA----KGIDVEWCKAHWAAG   75 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~-AYq~a----kgl~~~w~~~~d~gl   75 (82)
                      ++|.+||||||.+|++ +||++    +|++.+++.....-+
T Consensus       109 ~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~  149 (331)
T 1e2k_A          109 PPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALI  149 (331)
T ss_dssp             CCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred             cCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhc
Confidence            6899999999999998 79975    389998887776544

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.23  E-value=2.8e-07  Score=71.80  Aligned_cols=36  Identities=19%  Similarity=0.095  Sum_probs=30.3

Q ss_pred             hCCcEEEEeccCchhH-HHhhc----cCCCHHHHHhHhhcC
Q 034836           40 KAGTTLIVDCYFYSGV-VFASA----KGIDVEWCKAHWAAG   75 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~-AYq~a----kgl~~~w~~~~d~gl   75 (82)
                      +.|.+||||||.+|++ +||++    +|++.+++.....-+
T Consensus       154 ~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~  194 (376)
T 1of1_A          154 PPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALI  194 (376)
T ss_dssp             CCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred             cCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhc
Confidence            7899999999999998 79975    389999887776544

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.06  E-value=4.8e-07  Score=69.48  Aligned_cols=36  Identities=3%  Similarity=-0.141  Sum_probs=30.0

Q ss_pred             hCCcEEEEeccCchhHHHhhc-----cCCCHHHHHhHhhcC
Q 034836           40 KAGTTLIVDCYFYSGVVFASA-----KGIDVEWCKAHWAAG   75 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~AYq~a-----kgl~~~w~~~~d~gl   75 (82)
                      ++|.+||||||.+|+.+||+.     +|++.+++.+...-+
T Consensus       121 ~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~  161 (341)
T 1osn_A          121 EPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTL  161 (341)
T ss_dssp             SCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTC
T ss_pred             CCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhh
Confidence            889999999999999988764     389888887776644

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.99  E-value=5.8e-08  Score=67.51  Aligned_cols=51  Identities=10%  Similarity=0.001  Sum_probs=37.5

Q ss_pred             HHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc--C----CCHHHHHhHhhcC
Q 034836           20 SLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASAK--G----IDVEWCKAHWAAG   75 (82)
Q Consensus        20 sAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak--g----l~~~w~~~~d~gl   75 (82)
                      .++|.+|+. .+.|.+     ..|..||||||.+|+.+||++.  +    +..+|+...+..+
T Consensus        87 ~~~~~~~~~~~~~~~l-----~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~  144 (241)
T 2ocp_A           87 LEPFPEKLLQARKPVQ-----IFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEF  144 (241)
T ss_dssp             HSCCCHHHHSCSSCEE-----EEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhcccCCceE-----eeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            445555654 367777     7899999999999999999864  2    3567777766544

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=0.00025  Score=46.43  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=25.5

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA   60 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a   60 (82)
                      .++|.++|+++   +++.+     .+|. ||+|||.+|+++|+.+
T Consensus        54 ~~~~~~~r~~~---~~~~~-----~~~~-vi~d~~~~~~~~~~~~   89 (205)
T 2jaq_A           54 QIYMLTARSKQ---LKQAK-----NLEN-IIFDRTLLEDPIFMKV   89 (205)
T ss_dssp             HHHHHHHHHHH---HC-----------C-EEEESCTTTHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHhh-----ccCC-EEEEeccchhHHHHHH
Confidence            57888898876   55667     6675 9999999999999975

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.73  E-value=0.00099  Score=50.73  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=26.7

Q ss_pred             HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCH
Q 034836           29 VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDV   65 (82)
Q Consensus        29 ~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~   65 (82)
                      .+.++|    -++|.+||||||.||+++||+. ++++.
T Consensus       135 R~~~~L----P~~G~IvIfDRswYs~v~~~rv~g~~~~  168 (304)
T 3czq_A          135 RYVATF----PTAGEFVLFDRSWYNRAGVEPVMGFCTP  168 (304)
T ss_dssp             HHHTTC----CCTTCEEEEEECGGGGTTHHHHHTSSCH
T ss_pred             HHHHhc----ccCCeEEEEECCcchHHHHHHHhcCCCH
Confidence            466666    2689999999999999999987 55664

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.72  E-value=0.0011  Score=42.28  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             hCCcEEEEeccCchhHHHhhc----cCCCHHHHHhHhhcCCCCC
Q 034836           40 KAGTTLIVDCYFYSGVVFASA----KGIDVEWCKAHWAAGSRFG   79 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~AYq~a----kgl~~~w~~~~d~gl~r~~   79 (82)
                      .+|..||+|||.+|+++||+.    ..+...|....+.++++|+
T Consensus        53 ~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~   96 (173)
T 3kb2_A           53 ADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKA   96 (173)
T ss_dssp             TTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTE
T ss_pred             HhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCC
Confidence            778999999999999999853    2356778877777766664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.23  E-value=0.0036  Score=40.34  Aligned_cols=44  Identities=9%  Similarity=0.020  Sum_probs=31.4

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHh-h-ccCCCHHHHHh
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFA-S-AKGIDVEWCKA   70 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq-~-akgl~~~w~~~   70 (82)
                      .++|+++|      |++.+.   +.+|..||+|||  |+++|| + ..+++.+|++.
T Consensus        68 ~~~~~~~~------i~~~l~---~~~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~~  113 (194)
T 1nks_A           68 LQIDAAKG------IAEEAR---AGGEGYLFIDTH--AVIRTPSGYLPGLPSYVITE  113 (194)
T ss_dssp             HHHHHHHH------HHHHHH---HTCSSEEEEEEC--SEEEETTEEEESSCHHHHHH
T ss_pred             HHHHHHHH------HHHHhh---ccCCCEEEECCc--hhhccccccccCCCHHHHHh
Confidence            56666665      555541   146889999999  888998 3 46888888776

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=93.33  E-value=0.029  Score=44.90  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             hCCcEEEEeccCchhHHHhhcc-CCC-------HHHHHhHhhcCCCCCC
Q 034836           40 KAGTTLIVDCYFYSGVVFASAK-GID-------VEWCKAHWAAGSRFGT   80 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~AYq~ak-gl~-------~~w~~~~d~gl~r~~~   80 (82)
                      .+|.+||+|||.||.++|+... .++       ++|+..-|..|...|+
T Consensus        99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~  147 (500)
T 3czp_A           99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGA  147 (500)
T ss_dssp             CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6999999999999999998864 365       4566666666665554

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=91.07  E-value=0.36  Score=32.29  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=29.0

Q ss_pred             hHHHhHHHHHHH----HHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCHHHHHhHhh
Q 034836           18 ISSLVRIAGRRV----METKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDVEWCKAHWA   73 (82)
Q Consensus        18 LFsAdR~e~~~~----I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~~w~~~~d~   73 (82)
                      ++.++|+++...    +++.+     ++|.+||+| |. +  +||.    +.+|+++...
T Consensus        75 ~~~~~r~~~~~~~~~~~~~~l-----~~g~~VI~d-~~-~--~~~~----~~~~l~~l~~  121 (211)
T 1m7g_A           75 FSEADRNENIRRIAEVAKLFA-----DSNSIAITS-FI-S--PYRK----DRDTARQLHE  121 (211)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHH-----HTTCEEEEE-CC-C--CCHH----HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-----HCCCEEEEe-cC-C--ccHH----HHHHHHHHhh
Confidence            455899888763    45667     789999999 55 3  6664    2566665443

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=88.83  E-value=0.13  Score=41.22  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             hCCcEEEEeccCchhHHHhhccC
Q 034836           40 KAGTTLIVDCYFYSGVVFASAKG   62 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~AYq~akg   62 (82)
                      .+|.+||+|||.||.++|+...|
T Consensus       356 ~~G~i~IfDRswY~~~~v~rv~g  378 (500)
T 3czp_A          356 ARRQFTIFDRSWYGRVLVERIEG  378 (500)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHHT
T ss_pred             CCCeEEEEeCcchhhHHHHHHhc
Confidence            68999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.71
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.65
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.31
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.24
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.68
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.63
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.31
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	88.55

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=5.5e-18  Score=117.51  Aligned_cols=63  Identities=24%  Similarity=0.451  Sum_probs=58.3

Q ss_pred             cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhccC---CCHHHHHhHhhcCCCCC
Q 034836            9 SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAKG---IDVEWCKAHWAAGSRFG   79 (82)
Q Consensus         9 ~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akg---l~~~w~~~~d~gl~r~~   79 (82)
                      +.+.   +|||+|+|++++..|+|++     .+|.+||||||++|++|||++++   .+++|+.+.+.++|+|+
T Consensus        60 ~~~~---~llf~a~r~~~~~~i~~~l-----~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PD  125 (214)
T d1tmka_          60 DQAI---HLLFSANRWEIVDKIKKDL-----LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPD  125 (214)
T ss_dssp             HHHH---HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCS
T ss_pred             chHH---HHHHHHHHHHHHHHHHHHH-----hcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcc
Confidence            5666   9999999999999999999     99999999999999999999865   57999999999999997

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.8e-17  Score=111.73  Aligned_cols=70  Identities=29%  Similarity=0.527  Sum_probs=63.3

Q ss_pred             hhhhhcc-----cHHHHHHHHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhhcC
Q 034836            2 ISAYFRI-----SHTWMITQFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWAAG   75 (82)
Q Consensus         2 I~~yL~~-----~~~~~~~~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~gl   75 (82)
                      |..||.+     +.+.   +++|+++|+++.+.|+|+|     ++|.+||||||.+|++|||+. .+.+..|+...+.++
T Consensus        50 i~~~l~~~~~~~~~~~---~~l~~~~r~~~~~~i~~~l-----~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~  121 (209)
T d1nn5a_          50 LSSYLQKKSDVEDHSV---HLLFSANRWEQVPLIKEKL-----SQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL  121 (209)
T ss_dssp             HHHHHTTSSCCCHHHH---HHHHHHHHHTTHHHHHHHH-----HTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTS
T ss_pred             hhhhhhcccccchhhh---hhHHHHHHHHHHHhHHHHh-----hcccceeecchhhhhhhhhhhccCccHHHHHHHhccC
Confidence            4556654     5666   9999999999999999999     999999999999999999998 589999999999999


Q ss_pred             CCCC
Q 034836           76 SRFG   79 (82)
Q Consensus        76 ~r~~   79 (82)
                      |+|+
T Consensus       122 ~~PD  125 (209)
T d1nn5a_         122 PKPD  125 (209)
T ss_dssp             BCCS
T ss_pred             CCCc
Confidence            9997

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.2e-12  Score=86.76  Aligned_cols=59  Identities=19%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             HHhHHHhHHHHHH-HHHHHHHHhhhhCCcEEEEeccCchhHHHhhc-cCCCHHHHHhHhh---cCCCCC
Q 034836           16 QFISSLVRIAGRR-VMETKWKATKRKAGTTLIVDCYFYSGVVFASA-KGIDVEWCKAHWA---AGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~-~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~a-kgl~~~w~~~~d~---gl~r~~   79 (82)
                      +++|+++|+.+.. .|+|+|     ++|.+||||||.+|++|||+. .|++.+|+.....   +.|+|+
T Consensus        70 ~~l~~~~~~~~~~~~i~~~l-----~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd  133 (210)
T d4tmka_          70 VLMFYAARVQLVETVIKPAL-----ANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPD  133 (210)
T ss_dssp             HHHHHHHHHHHHHHTHHHHH-----HTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCc
Confidence            8999999999987 599999     999999999999999999986 6899999877654   457776

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.54  E-value=3.1e-08  Score=64.87  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=47.5

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhhhCCcEEEEeccCchhHHHhhcc------CCCHHHHHhH---hhcCCCCC
Q 034836           16 QFISSLVRIAGRRVMETKWKATKRKAGTTLIVDCYFYSGVVFASAK------GIDVEWCKAH---WAAGSRFG   79 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~ak------gl~~~w~~~~---d~gl~r~~   79 (82)
                      +++|.+++++....+.+..     ..|.+||||||.+|+.+|+.++      +...+|+..+   ..++|+|+
T Consensus        67 ~~l~~~~~~~~~~~~~~~~-----~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd  134 (208)
T d1gsia_          67 ATLFALDRAGAVHTIQGLC-----RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPD  134 (208)
T ss_dssp             HHHHHHHHHTTHHHHHHHH-----HHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCS
T ss_pred             HHHHHHHHHHHHHhHHHHh-----hhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCc
Confidence            7889999988888888888     8999999999999999999863      3345666554   44567776

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=2.9e-05  Score=50.85  Aligned_cols=45  Identities=9%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             HHHHHHHhhhhCCcEEEEeccCchhHHHhhccCCCH---------HHHHhHhhcCCCCC
Q 034836           30 METKWKATKRKAGTTLIVDCYFYSGVVFASAKGIDV---------EWCKAHWAAGSRFG   79 (82)
Q Consensus        30 I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~akgl~~---------~w~~~~d~gl~r~~   79 (82)
                      +.|.+     ..+.+|+||||.+++.+||.+.+...         +|+.....+.|+|+
T Consensus       101 ~~~~l-----~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pd  154 (241)
T d1p5zb_         101 EKPVL-----FFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELD  154 (241)
T ss_dssp             SSCEE-----EEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhhhh-----hcCCeEEEeccccHHHHHHHhcccchhHHHHHHHHHHHHhhcccCCCCc
Confidence            45555     66788999999999999998765432         35555555556665

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0035  Score=40.94  Aligned_cols=41  Identities=20%  Similarity=0.075  Sum_probs=30.5

Q ss_pred             HHHhHHHhHHHHHHH--HHHHHHHhhhhCCcEEEEeccCchhHHHhh
Q 034836           15 TQFISSLVRIAGRRV--METKWKATKRKAGTTLIVDCYFYSGVVFAS   59 (82)
Q Consensus        15 ~~LLFsAdR~e~~~~--I~~~L~~~~~~~G~~VI~DRY~~S~~AYq~   59 (82)
                      .+++|.++|+++...  +.+.+    +..+.+||+||+.+|+.+|..
T Consensus        74 ~q~~~~~~r~~~~~~~~~~~~~----~~~~~~vi~dr~~~s~~~~~~  116 (241)
T d2ocpa1          74 FQTFSFLSRLKVQLEPFPEKLL----QARKPVQIFERSVYSDRYIFA  116 (241)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHH----SCSSCEEEEESCHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh----hccchhhhhcccchhhhhhhh
Confidence            378889998877652  44544    255679999999999987753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.20  E-value=0.024  Score=41.33  Aligned_cols=60  Identities=15%  Similarity=0.065  Sum_probs=33.7

Q ss_pred             HHhHHHhHHHHHHHHHHHHHH-----hhhhCCcEEEEeccCchhH-HHhhc---c-CCCHHHHHhHhhcC
Q 034836           16 QFISSLVRIAGRRVMETKWKA-----TKRKAGTTLIVDCYFYSGV-VFASA---K-GIDVEWCKAHWAAG   75 (82)
Q Consensus        16 ~LLFsAdR~e~~~~I~~~L~~-----~~~~~G~~VI~DRY~~S~~-AYq~a---k-gl~~~w~~~~d~gl   75 (82)
                      ++.|++.+......+.+.++.     .....|.+||+|||.+|+. .|..+   . .++.+.......-+
T Consensus        80 Ql~fa~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivI~DRs~~S~~~vFa~~~~~~G~ms~~~~~~l~~~~  149 (329)
T d1e2ka_          80 QITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALI  149 (329)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccccCCCceeeecchhhhhHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            456665554444456665411     1124578999999999995 34322   2 35655555444444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.63  E-value=0.011  Score=42.99  Aligned_cols=37  Identities=19%  Similarity=0.004  Sum_probs=25.5

Q ss_pred             hCCcEEEEeccCchhH---HHhhc-cC-CCHHHHHhHhhcCC
Q 034836           40 KAGTTLIVDCYFYSGV---VFASA-KG-IDVEWCKAHWAAGS   76 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~---AYq~a-kg-l~~~w~~~~d~gl~   76 (82)
                      ..+.+||+|||.+|+.   +++.. .| ++.+...+....++
T Consensus       111 ~~~~~vI~DR~~~Ss~~iF~~~~y~~G~ls~~~~~~l~~~~~  152 (333)
T d1p6xa_         111 QPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLP  152 (333)
T ss_dssp             CCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCC
T ss_pred             cCCCeEEEECCcccchHHHHHHhhcCCCCCHHHHHHHHHHhc
Confidence            6788999999999995   33333 34 77777666655553

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.31  E-value=0.11  Score=37.48  Aligned_cols=17  Identities=6%  Similarity=0.042  Sum_probs=14.1

Q ss_pred             hCCcEEEEeccCchhHH
Q 034836           40 KAGTTLIVDCYFYSGVV   56 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~A   56 (82)
                      ..|.+||||||.+|+..
T Consensus       114 ~~~~~VI~DR~~~Ss~~  130 (331)
T d1osna_         114 EPYKIMLSDRHPIASTI  130 (331)
T ss_dssp             SCCEEEEEESCTHHHHT
T ss_pred             CCCCEEEEECCHhHHHH
Confidence            45789999999999853

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=88.55  E-value=0.083  Score=35.33  Aligned_cols=20  Identities=30%  Similarity=0.647  Sum_probs=17.3

Q ss_pred             hCCcEEEEeccCchhHHHhh
Q 034836           40 KAGTTLIVDCYFYSGVVFAS   59 (82)
Q Consensus        40 ~~G~~VI~DRY~~S~~AYq~   59 (82)
                      .....||.|||.||+++|..
T Consensus        52 adednviidrfvysnlvyak   71 (164)
T d2axpa1          52 ADEDNVIIDRFVYSNLVYAK   71 (164)
T ss_dssp             TTCCSEEEESCHHHHHHHTT
T ss_pred             ccccceeeehhhhhhhHHHh
Confidence            56667999999999999965