Citrus Sinensis ID: 035327

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWE
Secondary Structure (PSIPRED)
cccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcHHHcccHHHHHHHHHHHccEEcccccccccccccccEcEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
mdgapylrkidlkVYTCYPELLNALENMFQLTIGKyseregyngsdyaptyedkdgdwmlvgdvpwe
Flexible Loop (DISEMBL)
mdgapylrkidlkVYTCYPELLNALENMFQLTIGKYseregyngsdyaptyedkdgdwMLVGDVPWE
Low Complexity Region (SEG)
MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWE
Disordered region (IsUnstruct)
*****YLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD****
Disordered Region (DISOPRED)
MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGK**********DYAPTYEDKDGDWMLVGDVPWE
Disordered Region (DISEMBL)
MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWE
Disordered Region (DISPRO)
**GAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGDVPWE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
P32294	196	Auxin-induced protein 22B	N/A	no	1.0	0.341	0.835	4e-28
O24542	193	Auxin-induced protein 22D	N/A	no	0.985	0.341	0.848	8e-28
P49679	189	Auxin-induced protein IAA	N/A	no	1.0	0.354	0.835	9e-28
O24543	203	Auxin-induced protein 22E	N/A	no	0.985	0.325	0.833	1e-27
P49677	168	Auxin-responsive protein	yes	no	1.0	0.398	0.805	5e-27
P49678	174	Auxin-responsive protein	no	no	1.0	0.385	0.791	4e-26
P33077	186	Auxin-responsive protein	no	no	1.0	0.360	0.761	4e-26
Q38822	189	Auxin-responsive protein	no	no	1.0	0.354	0.731	4e-24
O24407	236	Auxin-responsive protein	no	no	1.0	0.283	0.612	7e-19
Q9ZSY8	305	Auxin-responsive protein	no	no	1.0	0.219	0.573	6e-18

>sp|P32294|AX22B_VIGRR Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRK+DLKVY  YPELL ALE MF+L IG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 106 MDGAPYLRKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWML 165

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 166 VGDVPWD 172

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Vigna radiata var. radiata (taxid: 3916)

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/66 (84%), Positives = 59/66 (89%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           M GAPYLRKIDLKVY  YPELL ALENMF+   G+YSEREGYNGS+YAPTYEDKDGDWML
Sbjct: 104 MAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWML 163

Query: 61  VGDVPW 66
           VGDVPW
Sbjct: 164 VGDVPW 169

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|P49679|IAA4_PEA Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDL+VY  Y ELL ALE MF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 99  MDGAPYLRKIDLRVYGGYSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 158

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 159 VGDVPWD 165

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|O24543|AX22E_VIGRR Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 60/66 (90%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           M GAPYLRKIDLKVY  YPELL AL+N+F+ T G+YSEREGYNGS+YAPTYEDKDGDWML
Sbjct: 114 MAGAPYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWML 173

Query: 61  VGDVPW 66
           VGDVPW
Sbjct: 174 VGDVPW 179

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|P49677|IAA1_ARATH Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLK+Y  YPELL ALENMF+ T+G+YSEREGY GS + PTYEDKDGDWML
Sbjct: 81  MDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWML 140

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 141 VGDVPWD 147

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49678|IAA2_ARATH Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=1 SV=3

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 58/67 (86%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLK Y  YPELL ALENMF++ IG+Y EREGY GS + PTYEDKDGDWML
Sbjct: 84  MDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWML 143

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 144 VGDVPWD 150

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P33077|IAA4_ARATH Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 59/67 (88%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDL +Y  YPEL+ +LENMF+ ++G+Y EREGY GSD+ PTYEDKDGDWML
Sbjct: 95  MDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWML 154

Query: 61  VGDVPWE 67
           VGDVPWE
Sbjct: 155 VGDVPWE 161

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDL  Y  Y ELL ALE MF+ ++G+Y ER+GY GSD+ PTYEDKDGDWML
Sbjct: 99  MDGAPYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWML 158

Query: 61  VGDVPWE 67
           +GDVPWE
Sbjct: 159 IGDVPWE 165

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 53/80 (66%), Gaps = 13/80 (16%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQ-LTIGKYSER------------EGYNGSDY 47
           MDGAPYLRKIDLK+Y  Y +L NAL  MF   TIG Y  +            +  NGSDY
Sbjct: 125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDY 184

Query: 48  APTYEDKDGDWMLVGDVPWE 67
            PTYEDKDGDWMLVGDVPWE
Sbjct: 185 VPTYEDKDGDWMLVGDVPWE 204

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 53/82 (64%), Gaps = 15/82 (18%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQ-LTIGKYSE-----REGYN---------GS 45
           M+GAPYLRKIDLK Y  Y EL +ALE MF   TIG++       R+G N         GS
Sbjct: 192 MEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGS 251

Query: 46  DYAPTYEDKDGDWMLVGDVPWE 67
           +Y  TYEDKD DWMLVGDVPWE
Sbjct: 252 EYVVTYEDKDSDWMLVGDVPWE 273

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
225437213	186	PREDICTED: auxin-induced protein 22D [Vi	1.0	0.360	0.880	3e-28
255559921	196	Auxin-induced protein 22E, putative [Ric	0.985	0.336	0.878	9e-28
34550779	190	Gbiaa-Re [Gossypium barbadense]	1.0	0.352	0.865	1e-27
429326550	196	hypothetical protein [Populus tomentosa]	1.0	0.341	0.880	1e-27
118488743	226	unknown [Populus trichocarpa]	1.0	0.296	0.880	1e-27
224102149	207	predicted protein [Populus trichocarpa]	1.0	0.323	0.880	1e-27
302398569	191	ARF domain class transcription factor [M	1.0	0.350	0.850	1e-27
30060240	91	auxin responsive protein IAA-Re [Gossypi	1.0	0.736	0.865	2e-27
429326548	203	hypothetical protein [Populus tomentosa]	1.0	0.330	0.865	2e-27
224107927	192	predicted protein [Populus trichocarpa]	1.0	0.348	0.865	2e-27

>gi|225437213|ref|XP_002281696.1| PREDICTED: auxin-induced protein 22D [Vitis vinifera] gi|297735491|emb|CBI17931.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 61/67 (91%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELLNALENMF+  IG+YSEREGYNGSDY P YEDKDGDWML
Sbjct: 104 MDGAPYLRKIDLKVYKSYPELLNALENMFKFRIGEYSEREGYNGSDYTPAYEDKDGDWML 163

Query: 61  VGDVPWE 67
           VGDVPWE
Sbjct: 164 VGDVPWE 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559921|ref|XP_002520979.1| Auxin-induced protein 22E, putative [Ricinus communis] gi|223539816|gb|EEF41396.1| Auxin-induced protein 22E, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/66 (87%), Positives = 62/66 (93%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           +DGAPYLRKID+KVY  YPELL ALENMF+L IG+YSEREGYNGSDYAPTYEDKDGDWML
Sbjct: 107 VDGAPYLRKIDIKVYNSYPELLKALENMFKLKIGEYSEREGYNGSDYAPTYEDKDGDWML 166

Query: 61  VGDVPW 66
           VGDVPW
Sbjct: 167 VGDVPW 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34550779|gb|AAQ74955.1| Gbiaa-Re [Gossypium barbadense]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLK+Y+ YPELL A+ENMF+ TIG+YSEREGY GSDYAPTYEDKDGDWML
Sbjct: 100 MDGAPYLRKIDLKIYSGYPELLQAIENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWML 159

Query: 61  VGDVPWE 67
           VGDVPWE
Sbjct: 160 VGDVPWE 166

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326550|gb|AFZ78615.1| hypothetical protein [Populus tomentosa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELL ALENMF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 106 MDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 165

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 166 VGDVPWD 172

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488743|gb|ABK96182.1| unknown [Populus trichocarpa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELL ALENMF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 136 MDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 195

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 196 VGDVPWD 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102149|ref|XP_002312567.1| predicted protein [Populus trichocarpa] gi|222852387|gb|EEE89934.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELL ALENMF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 117 MDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 176

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 177 VGDVPWD 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398569|gb|ADL36579.1| ARF domain class transcription factor [Malus x domestica]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDL+VY CYPELL ALE MF+ TIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 101 MDGAPYLRKIDLRVYKCYPELLKALEVMFKFTIGQYSEREGYKGSEYAPTYEDKDGDWML 160

Query: 61  VGDVPWE 67
           VGDVPW+
Sbjct: 161 VGDVPWD 167

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30060240|gb|AAP13077.1| auxin responsive protein IAA-Re [Gossypium barbadense]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1  MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
          MDGAPYLRKIDLK+Y+ YPELL A+ENMF+ TIG+YSEREGY GSDYAPTYEDKDGDWML
Sbjct: 1  MDGAPYLRKIDLKIYSGYPELLQAIENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWML 60

Query: 61 VGDVPWE 67
          VGDVPWE
Sbjct: 61 VGDVPWE 67

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326548|gb|AFZ78614.1| hypothetical protein [Populus tomentosa]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELL ALENMF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 118 MDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 177

Query: 61  VGDVPWE 67
           +GDVPW+
Sbjct: 178 IGDVPWD 184

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107927|ref|XP_002314656.1| predicted protein [Populus trichocarpa] gi|222863696|gb|EEF00827.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
           MDGAPYLRKIDLKVY  YPELL ALENMF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct: 107 MDGAPYLRKIDLKVYKGYPELLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 166

Query: 61  VGDVPWE 67
           +GDVPW+
Sbjct: 167 IGDVPWD 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	1.0	0.354	0.835	1e-27
TAIR|locus:2129910	168	IAA1 "indole-3-acetic acid ind	1.0	0.398	0.805	1.3e-27
TAIR|locus:2094578	174	IAA2 "indole-3-acetic acid ind	1.0	0.385	0.791	1.5e-26
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	1.0	0.360	0.761	1.9e-26
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	1.0	0.354	0.731	1.2e-24
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	1.0	0.283	0.625	1.5e-19
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.985	0.288	0.587	1.7e-18
UNIPROTKB|Q5VRD1	199	IAA1 "Auxin-responsive protein	1.0	0.336	0.567	2.2e-18
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	1.0	0.287	0.6	2.8e-18
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	1.0	0.260	0.632	5.8e-18

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
             MDGAPYLRKIDL+VY  Y ELL ALE MF+LTIG+YSEREGY GS+YAPTYEDKDGDWML
Sbjct:    99 MDGAPYLRKIDLRVYGGYSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWML 158

Query:    61 VGDVPWE 67
             VGDVPW+
Sbjct:   159 VGDVPWD 165

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129910 IAA1 "indole-3-acetic acid inducible" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
             MDGAPYLRKIDLK+Y  YPELL ALENMF+ T+G+YSEREGY GS + PTYEDKDGDWML
Sbjct:    81 MDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWML 140

Query:    61 VGDVPWE 67
             VGDVPW+
Sbjct:   141 VGDVPWD 147

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094578 IAA2 "indole-3-acetic acid inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 53/67 (79%), Positives = 58/67 (86%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
             MDGAPYLRKIDLK Y  YPELL ALENMF++ IG+Y EREGY GS + PTYEDKDGDWML
Sbjct:    84 MDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWML 143

Query:    61 VGDVPWE 67
             VGDVPW+
Sbjct:   144 VGDVPWD 150

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 51/67 (76%), Positives = 59/67 (88%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
             MDGAPYLRKIDL +Y  YPEL+ +LENMF+ ++G+Y EREGY GSD+ PTYEDKDGDWML
Sbjct:    95 MDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWML 154

Query:    61 VGDVPWE 67
             VGDVPWE
Sbjct:   155 VGDVPWE 161

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 49/67 (73%), Positives = 56/67 (83%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWML 60
             MDGAPYLRKIDL  Y  Y ELL ALE MF+ ++G+Y ER+GY GSD+ PTYEDKDGDWML
Sbjct:    99 MDGAPYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWML 158

Query:    61 VGDVPWE 67
             +GDVPWE
Sbjct:   159 IGDVPWE 165

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/80 (62%), Positives = 53/80 (66%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQ-LTIGKYSER-------EG-----YNGSDY 47
             MDGAPYLRKIDLK+Y  Y +L NAL  MF   TIG Y  +       E       NGSDY
Sbjct:   125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDY 184

Query:    48 APTYEDKDGDWMLVGDVPWE 67
              PTYEDKDGDWMLVGDVPWE
Sbjct:   185 VPTYEDKDGDWMLVGDVPWE 204

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 47/80 (58%), Positives = 52/80 (65%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMFQ-LTIGKYSEREGY-------------NGSD 46
             MDGAPYLRKIDL++Y  Y EL NAL NMF   T+GK+   EG              N  D
Sbjct:   117 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 176

Query:    47 YAPTYEDKDGDWMLVGDVPW 66
             Y P+YEDKDGDWMLVGDVPW
Sbjct:   177 YVPSYEDKDGDWMLVGDVPW 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q5VRD1 IAA1 "Auxin-responsive protein IAA1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 42/74 (56%), Positives = 55/74 (74%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMF--QLTIGKYSERE-----GYNGSDYAPTYED 53
             +DGAPYLRK+DL+ Y+ Y +LL AL++ F    TI K+++ E       NG++Y PTYED
Sbjct:   100 VDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYED 159

Query:    54 KDGDWMLVGDVPWE 67
             KDGDWMLVGDVPW+
Sbjct:   160 KDGDWMLVGDVPWK 173

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/75 (60%), Positives = 50/75 (66%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMF-QLTIGKYSEREGYNGS-------DYAPTYE 52
             MDGAPYLRKID+ +Y  YPEL  A +NMF   TIGK    +    S       +Y PTYE
Sbjct:   129 MDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYE 188

Query:    53 DKDGDWMLVGDVPWE 67
             DKDGDWMLVGDVPWE
Sbjct:   189 DKDGDWMLVGDVPWE 203

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:     1 MDGAPYLRKIDLKVYTCYPELLNALENMF-QLTIGKYSEREGYNGSDYAPTYEDKDGDWM 59
             MDGAPYLRK+DLK Y  Y +L  ALE MF   T GK    E     +Y  TYEDKDGDWM
Sbjct:   158 MDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWM 217

Query:    60 LVGDVPWE 67
             LVGDVPWE
Sbjct:   218 LVGDVPWE 225

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49677	IAA1_ARATH	No assigned EC number	0.8059	1.0	0.3988	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	67
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	5e-44

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  138 bits (351), Expect = 5e-44
 Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 1   MDGAPYLRKIDLKVYTCYPELLNALENMFQ-LTIGKYSEREGYNGSDYAPTYEDKDGDWM 59
           MDGAPYLRK+DLK+Y  Y EL +ALE MF   TIG+    +  NGS+Y PTYEDKDGDWM
Sbjct: 97  MDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYEDKDGDWM 156

Query: 60  LVGDVPWE 67
           LVGDVPWE
Sbjct: 157 LVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	99.97
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.52
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.49
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.38
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.18
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	97.13
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.04
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.89
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.78
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.66
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	96.48
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.29
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.05
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.43
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	90.34

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=99.97  E-value=5.6e-33  Score=189.66  Aligned_cols=67  Identities=58%  Similarity=1.034  Sum_probs=0.0

Q ss_pred             CCCcccceeecCCCCCCHHHHHHHHHHhhcc-cccccc-----c---CCCCCCCCceEEEEeCCCCeEeeccCCCC
Q 035327            1 MDGAPYLRKIDLKVYTCYPELLNALENMFQL-TIGKYS-----E---REGYNGSDYAPTYEDKDGDWMLVGDVPWE   67 (67)
Q Consensus         1 MdG~~igRkvDL~~~~sY~~L~~~L~~MF~~-~~g~~~-----~---~~~~~~~~~~l~YeD~eGD~mlvGDvPW~   67 (67)
                      |||+||||||||++|+||++|+.+|++||++ .|+++.     +   .+..++++|+|||||+||||||||||||+
T Consensus       116 mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  116 MDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHH
Confidence            8999999999999999999999999999953 333221     0   01124679999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>smart00666 PB1 PB1 domain

Probab=97.52  E-value=0.00042  Score=40.08  Aligned_cols=45  Identities=20%  Similarity=0.445  Sum_probs=37.4

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      |.+-+..--+|++|.+++.+.|+...           ..++|.|+|.||||..+.+
T Consensus        13 ~~~~~~~~~s~~dL~~~i~~~~~~~~-----------~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666       13 RRLSVPRDISFEDLRSKVAKRFGLDN-----------QSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECCCCCHHHHHHHHHHHhCCCC-----------CCeEEEEECCCCCEEEecC
Confidence            66677778899999999999999651           2489999999999987653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.49  E-value=0.00035  Score=40.40  Aligned_cols=44  Identities=25%  Similarity=0.494  Sum_probs=37.2

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      .+.+..--+|++|...+++.|+.. +          ..+.+.|.|.||||..+-.
T Consensus        15 ~~~~~~~~s~~~L~~~i~~~~~~~-~----------~~~~l~Y~D~dgD~V~i~s   58 (84)
T PF00564_consen   15 IISLPSDVSFDDLRSKIREKFGLL-D----------EDFQLKYKDEDGDLVTISS   58 (84)
T ss_dssp             EEEECSTSHHHHHHHHHHHHHTTS-T----------SSEEEEEEETTSSEEEESS
T ss_pred             EEEcCCCCCHHHHHHHHHHHhCCC-C----------ccEEEEeeCCCCCEEEeCC
Confidence            477777789999999999999976 1          2489999999999988753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.38  E-value=0.00072  Score=40.67  Aligned_cols=44  Identities=25%  Similarity=0.430  Sum_probs=35.5

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      +.+-|..--+|++|.+++.+.|.+..          .+.+.|-|.|.||||..+
T Consensus        12 ~r~~l~~~~~~~~L~~~i~~r~~~~~----------~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407          12 IRFRLPPSWGFTELKQEIAKRFKLDD----------MSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCC----------CCeeEEEEECCCCCeEEe
Confidence            34555666699999999999999751          245999999999999876

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.18  E-value=0.0015  Score=39.98  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327           15 YTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      .-+|++|...+++.|.+..          ..++++.|.|.+|||..+-
T Consensus        24 d~~~~~L~~kI~~~f~l~~----------~~~~~l~Y~Dedgd~V~l~   61 (91)
T cd06398          24 DLNMDGLREKVEELFSLSP----------DADLSLTYTDEDGDVVTLV   61 (91)
T ss_pred             CCCHHHHHHHHHHHhCCCC----------CCcEEEEEECCCCCEEEEc
Confidence            5799999999999998751          2469999999999998764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=97.13  E-value=0.0016  Score=39.84  Aligned_cols=49  Identities=24%  Similarity=0.247  Sum_probs=37.7

Q ss_pred             ccceee--cCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            5 PYLRKI--DLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         5 ~igRkv--DL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      |-||.+  -+....|+.+|.+++.+=|+...-.        .+.+.|.|.|.||||.++
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~--------~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFE--------THLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc--------CCcccEEEEcCCCCEEEE
Confidence            445544  4445789999999999999976211        246999999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.04  E-value=0.0025  Score=36.55  Aligned_cols=44  Identities=18%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             eecCC-CCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            9 KIDLK-VYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         9 kvDL~-~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      .+-+. ..-+|++|...+.+.|++..           ..+.+.|.|.||||..+.+
T Consensus        13 ~~~~~~~~~s~~~L~~~i~~~~~~~~-----------~~~~l~y~D~e~d~v~l~s   57 (81)
T cd05992          13 RFVVVSRSISFEDLRSKIAEKFGLDA-----------VSFKLKYPDEDGDLVTISS   57 (81)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhCCCC-----------CcEEEEeeCCCCCEEEeCC
Confidence            34444 77899999999999999762           2489999999999987754

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.89  E-value=0.0043  Score=37.74  Aligned_cols=39  Identities=33%  Similarity=0.594  Sum_probs=31.9

Q ss_pred             CHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327           17 CYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus        17 sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      +|.+|...+++.|....+.        ...+.+.|.|.|||+.-+-+
T Consensus        22 t~~~L~~~v~~~F~~~~~~--------~~~flIKYkD~dGDlVTIts   60 (81)
T cd06401          22 TYDELLLMMQRVFRGKLGS--------SDDVLIKYKDEDGDLITIFD   60 (81)
T ss_pred             cHHHHHHHHHHHhccccCC--------cccEEEEEECCCCCEEEecc
Confidence            9999999999999955332        34699999999999986643

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.78  E-value=0.0048  Score=37.42  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      +++.+..-+|++|...+.++|++.             .+.|.|-|.||||.++
T Consensus        15 ~~~~~~~~~~~~L~~ev~~rf~l~-------------~f~lKYlDde~e~v~l   54 (81)
T cd06396          15 LVSDSENTTWASVEAMVKVSFGLN-------------DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EecCCCCCCHHHHHHHHHHHhCCC-------------cceeEEEcCCCCEEEE
Confidence            444455779999999999999977             1799999999999886

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.66  E-value=0.0062  Score=37.02  Aligned_cols=42  Identities=19%  Similarity=0.419  Sum_probs=34.6

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      .+|.+...+|+++.+-|++++.+. .          ..+.|-|.|.+||.+-+
T Consensus        15 sl~r~~~~~f~ef~~ll~~lH~l~-~----------~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403          15 SLDRNKPGKFEDFYKLLEHLHHIP-N----------VDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             EeccccCcCHHHHHHHHHHHhCCC-C----------CcEEEEEeCCCCCEecc
Confidence            355566799999999999999976 1          34999999999998754

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=96.48  E-value=0.009  Score=36.47  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             ceeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327            7 LRKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus         7 gRkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      -|++....-=+|.+|.+.|+.+|.+...          + +.++|.|.+||..-+-
T Consensus        11 ~RRf~~~~~pt~~~L~~kl~~Lf~lp~~----------~-~~vtYiDeD~D~ITls   55 (82)
T cd06397          11 TRRIVFPDIPTWEALASKLENLYNLPEI----------K-VGVTYIDNDNDEITLS   55 (82)
T ss_pred             eEEEecCCCccHHHHHHHHHHHhCCChh----------H-eEEEEEcCCCCEEEec
Confidence            4788888888999999999999998711          2 7999999999987554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.29  E-value=0.014  Score=35.70  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             CCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           12 LKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        12 L~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      +...-+|++|.+.+.+||.+..+          ..+++.|.|.|||.--+
T Consensus        16 ~d~~~s~e~L~~~v~~~c~~~~~----------q~ft~kw~DEEGDp~ti   55 (83)
T cd06404          16 IDPSISLEELCNEVRDMCRFHND----------QPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             cCCCcCHHHHHHHHHHHhCCCCC----------CcEEEEEECCCCCceee
Confidence            34467899999999999997622          35999999999997544

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.05  E-value=0.026  Score=34.53  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=33.4

Q ss_pred             ecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327           10 IDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus        10 vDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      +|=....+|++|...+.++|....          +..+++.|.|.|||..-+.
T Consensus        21 l~~~~~~s~~~L~~~V~~~f~~l~----------~~~ftlky~DeeGDlvtIs   63 (87)
T cd06402          21 IDEDVSTSYEYLVEKVAAVFPSLR----------GKNFQLFWKDEEGDLVAFS   63 (87)
T ss_pred             ecCCCCcCHHHHHHHHHHHccccC----------CCcEEEEEECCCCCEEeec
Confidence            344666799999999999997431          2359999999999987553

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.43  E-value=0.41  Score=29.28  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=34.6

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      |-|-+..--+|++|...+.++|++. .           .+++-|.|. ||..-+++
T Consensus        14 ~~i~v~~~i~f~dL~~kIrdkf~~~-~-----------~~~iKykDE-GD~iti~s   56 (86)
T cd06408          14 RYIMIGPDTGFADFEDKIRDKFGFK-R-----------RLKIKMKDD-GDMITMGD   56 (86)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC-C-----------ceEEEEEcC-CCCccccC
Confidence            4555666678999999999999985 1           389999999 99876664

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=90.34  E-value=0.78  Score=28.54  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           11 DLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        11 DL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      ||+..-+|.+|.....+-|...             +-.|-|+|.|||..-+
T Consensus        23 ~l~~~P~~kdLl~lmr~~f~~~-------------dIaLNYrD~EGDLIRl   60 (92)
T cd06399          23 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLIRL   60 (92)
T ss_pred             ccccCccHHHHHHHHHHHhchh-------------heeeeeecCCCCEEEE
Confidence            7888899999999999988854             2477899999998654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.87
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.35
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.65
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.61
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	93.13
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	92.15
1pqs_A	77	Cell division control protein 24; alpha and beta p	91.12
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	90.31
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	88.57
1e8p_A	46	Endoglucanase, dockerin; cellulose docking domain,	81.78

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.87  E-value=0.002  Score=38.63  Aligned_cols=41  Identities=22%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             ecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           10 IDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        10 vDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      +|-+...+|++|...++++|.+.           ...+++.|.|.+||++-+
T Consensus        22 ~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpI   62 (86)
T 1wmh_B           22 LPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPL   62 (86)
T ss_dssp             EEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEEC
T ss_pred             ccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeee
Confidence            44456689999999999999854           135999999999999754

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.35  E-value=0.0074  Score=36.14  Aligned_cols=44  Identities=16%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      |.+-+..--+|++|...+.++|.+..+          ..+++.|.|.|||+.-+
T Consensus        18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~----------~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A           18 MITHFEPSISFEGLCNEVRDMCSFDNE----------QLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHTTCCSS----------CCEEEEECCSSSCCEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCC----------CeEEEEEECCCCCcccc
Confidence            344444456999999999999997622          35899999999998654

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.65  E-value=0.018  Score=36.12  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327           15 YTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      -.+|++|...++++|..-.+          ..|.+.|.|.|||+.-+.
T Consensus        56 ~~s~~~L~~kV~~lFp~L~~----------~~f~l~YkDEdGDlItIS   93 (117)
T 2ktr_A           56 PGPSERLLSRVAVLFPALRP----------GGFQAHYRAERGDLVAFS   93 (117)
T ss_dssp             CCHHHHHHHHHHHHCTTSCS----------SCEEEEEECTTCCEEEEC
T ss_pred             CCCHHHHHHHHHHHccccCC----------CcEEEEEECCCCCEEEec
Confidence            46999999999999962212          359999999999987553

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.61  E-value=0.023  Score=34.71  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327           16 TCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus        16 ~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      .+|++|...++++|..-.          +..+.+.|.|.|||..-+.
T Consensus        42 ~s~~~L~~~V~~lFp~l~----------~~~f~l~Y~DedGDlItiS   78 (102)
T 2kkc_A           42 GPCERLLSRVAVLFPALR----------PGGFQAHYRAERGDLVAFS   78 (102)
T ss_dssp             CHHHHHHHHHHHHCTTSC----------SSCEEEEEECTTCCEEEEC
T ss_pred             ccHHHHHHHHHHHccccC----------CCcEEEEEECCCCCEEEec
Confidence            589999999999997331          2359999999999987654

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.13  E-value=0.23  Score=30.72  Aligned_cols=38  Identities=32%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             cCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           11 DLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        11 DL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      ||+.--+|.+|..-..+-|...             +-.|-|+|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEE
Confidence            6788889999999999999843             3588899999999755

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=92.15  E-value=0.33  Score=29.46  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      |.|=++.--+|++|..++.+-|..+.+.  +    -....++-|+|.|||+..+++
T Consensus        25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~~--~----i~~~~klkYkDEdGD~Vtl~s   74 (98)
T 1q1o_A           25 FTLLVEKVWNFDDLIMAINSKISNTHNN--N----ISPITKIKYQDEDGDFVVLGS   74 (98)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHHHCSS--C----CCCCCCEEEECSSSCEEEECS
T ss_pred             EEEEecCCCCHHHHHHHHHHHHcCCccc--c----ccceeEEEEEcCCCCEEEEcC
Confidence            5555667778999999999999965111  0    013479999999999988775

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=91.12  E-value=0.5  Score=27.30  Aligned_cols=49  Identities=18%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeecc
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVGD   63 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvGD   63 (67)
                      .|=...--+|++|...+.+-|... -...     .....++-|+|.|||+...++
T Consensus         5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~-----~~~~~~lkYkDEdGD~Vti~s   53 (77)
T 1pqs_A            5 TLLVEKVWNFDDLIMAINSKISNT-HNNN-----ISPITKIKYQDEDGDFVVLGS   53 (77)
T ss_dssp             EEECTTCCCSHHHHHHHHHHTTTT-TSSC-----SCSTTCCEEEETTTEEEECCS
T ss_pred             EEEeCCCCCHHHHHHHHHHHHccc-cccc-----ccceeEEEEEcCCCCEEEEcC
Confidence            344556678999999999999943 1000     124589999999999987765

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=90.31  E-value=0.84  Score=27.19  Aligned_cols=34  Identities=15%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           15 YTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      --++++|...+...|+++             .+++.|.|.|||-.-|
T Consensus        27 ~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i   60 (87)
T 2bkf_A           27 NTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI   60 (87)
T ss_dssp             GCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEE
T ss_pred             CCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEE
Confidence            678999999999999976             2799999999997654

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=88.57  E-value=0.57  Score=28.67  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           14 VYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        14 ~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      .--++++|...+...|+++             .++|.|.|.|||-.-|
T Consensus        34 ~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i   68 (101)
T 1wj6_A           34 ENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI   68 (101)
T ss_dssp             TTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC
T ss_pred             CCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE
Confidence            3678999999999999976             2799999999997643

>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A

Probab=81.78  E-value=0.45  Score=25.40  Aligned_cols=13  Identities=31%  Similarity=0.774  Sum_probs=11.1

Q ss_pred             eEEEEeCCCCeEe
Q 035327           48 APTYEDKDGDWML   60 (67)
Q Consensus        48 ~l~YeD~eGD~ml   60 (67)
                      .++|+|.+|+|=.
T Consensus        20 ~V~YtD~dG~WGV   32 (46)
T 1e8p_A           20 KVEYTDASGQWGV   32 (46)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             eEEEEcCCCcccc
Confidence            5899999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.81
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.17
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	93.79
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	91.61
d1e8qa_	46	Cellulose docking domain, dockering {Piromyces equ	84.24
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	82.79
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	81.13

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0012  Score=38.04  Aligned_cols=41  Identities=12%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      +|-++...+|.+|...+++.|++.             .+.|.|.|.|+||.++.
T Consensus        19 ~ls~~~~~~~~~L~~~i~~rf~l~-------------~~~lkY~Ddd~e~v~l~   59 (85)
T d2bkfa1          19 LVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN   59 (85)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred             EecCCCCCcHHHHHHHHHHhcCcc-------------cceEEEEcCCCCEEEEe
Confidence            344556788999999999999865             27899999999999875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0028  Score=35.74  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=33.3

Q ss_pred             eeecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327            8 RKIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus         8 RkvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      |.+=|..--+|.+|..++.+.|...             .++|-|+|.||||..+-
T Consensus        24 ~~~~l~~~it~~dL~~kI~~rf~~~-------------~~~lkY~Dedgd~v~i~   65 (85)
T d1ip9a_          24 FALMLKGDTTYKELRSKIAPRIDTD-------------NFKLQTKLFDGSGEEIK   65 (85)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHTSS-------------CEEEEECCSSSCCSCCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCCC-------------ceEEEEEcCCCCEEEEe
Confidence            3445566678999999999999743             28999999999997653

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.068  Score=30.34  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             eecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327            9 KIDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus         9 kvDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      .+|.+...+|++...-|+++=.+.           +.++.+.|.|..||.+-+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~-----------~~~f~i~Y~D~hgDLLPI   58 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPL   58 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEEC
T ss_pred             eeccccccCHHHHHHHHHHHcCCC-----------CCcEEEEEecCCCCcccc
Confidence            467778899999999999998765           235899999999998754

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.22  Score=29.20  Aligned_cols=39  Identities=31%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             ecCCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEee
Q 035327           10 IDLKVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLV   61 (67)
Q Consensus        10 vDL~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlv   61 (67)
                      =||+.--+|.+|..-..+-|...             +-.|-|.|.|||..-+
T Consensus        25 edl~~~P~ykdLl~lmr~~f~~~-------------dIaLNYrD~eGDLIRl   63 (105)
T d1oeyj_          25 EDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRL   63 (105)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEEC
T ss_pred             cccccCccHHHHHHHHHHHhccc-------------eeEeeeecCCCCEEEE
Confidence            37888999999999999999854             2588899999998754

>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}

class: Small proteins
fold: Cellulose docking domain, dockering
superfamily: Cellulose docking domain, dockering
family: Cellulose docking domain, dockering
domain: Cellulose docking domain, dockering
species: Piromyces equi [TaxId: 99929]

Probab=84.24  E-value=0.15  Score=26.01  Aligned_cols=14  Identities=29%  Similarity=0.643  Sum_probs=11.7

Q ss_pred             CceEEEEeCCCCeE
Q 035327           46 DYAPTYEDKDGDWM   59 (67)
Q Consensus        46 ~~~l~YeD~eGD~m   59 (67)
                      .-.++|+|.+|+|=
T Consensus        18 ~~~V~ytD~dG~WG   31 (46)
T d1e8qa_          18 STKVEYTDASGQWG   31 (46)
T ss_dssp             GSCEEEEETTEEEE
T ss_pred             CCeEEEecCCCccc
Confidence            45799999999984

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=1.1  Score=25.11  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             CCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeE
Q 035327           13 KVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWM   59 (67)
Q Consensus        13 ~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~m   59 (67)
                      ...-+|++|...+..|.++...          .-+++-..|.|||--
T Consensus        18 ~~~it~e~l~~evr~~C~f~~~----------q~fT~KWiDeEGDPC   54 (83)
T d1wmha_          18 EPSISFEGLCNEVRDMCSFDNE----------QLFTMKWIDEEGDPC   54 (83)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCTT----------CCCEEEEECTTSCEE
T ss_pred             CCCccHHHHHHHHHHHhCCCcC----------CcEEEEEEcCCCCce
Confidence            3456899999999999998732          248999999999954

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.13  E-value=1.2  Score=24.57  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             CCCCCHHHHHHHHHHhhcccccccccCCCCCCCCceEEEEeCCCCeEeec
Q 035327           13 KVYTCYPELLNALENMFQLTIGKYSEREGYNGSDYAPTYEDKDGDWMLVG   62 (67)
Q Consensus        13 ~~~~sY~~L~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mlvG   62 (67)
                      +.--+|++|..++.+-...+ +.-+     .+..-++-|+|.|||...+.
T Consensus         9 ~~~i~f~~L~~kI~~Kia~~-~~~~-----~~~~~rlrY~DeDGD~V~i~   52 (77)
T d1pqsa_           9 EKVWNFDDLIMAINSKISNT-HNNN-----ISPITKIKYQDEDGDFVVLG   52 (77)
T ss_dssp             TTCCCSHHHHHHHHHHTTTT-TSSC-----SCSTTCCEEEETTTEEEECC
T ss_pred             EcCcCHHHHHHHHHHHHHhc-cCCC-----CCccceEEEEcCCCCEEEEe
Confidence            34468999999998876533 2111     11234999999999976553