Citrus Sinensis ID: 035437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccHHHHEEccccHHHHHHHHHHHHHHHHHHHHHEHHEEcc
Coil and Loop (DISEMBL)
MADGSTATCVDILLAVIlpplgvflkfgCKAEFWICLLLTILGYIPGIIYAVYAITKK
Flexible Loop (DISEMBL)
MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Low Complexity Region (SEG)
MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Disordered region (IsUnstruct)
******ATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI***
Disordered Region (DISOPRED)
******A**VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Disordered Region (DISEMBL)
MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Disordered Region (DISPRO)
****STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
Q0DKW8	55	Hydrophobic protein LTI6B	yes	no	0.913	0.963	0.830	7e-19
A2Y075	55	Hydrophobic protein LTI6B	N/A	no	0.913	0.963	0.830	7e-19
Q8H5T6	56	Hydrophobic protein LTI6A	no	no	0.965	1.0	0.789	3e-18
Q9ZNS6	54	Hydrophobic protein RCI2B	yes	no	0.913	0.981	0.773	2e-17
Q9ZNQ7	54	Hydrophobic protein RCI2A	no	no	0.913	0.981	0.754	3e-17
Q9LRI7	72	Hydrophobic protein OSR8	no	no	0.948	0.763	0.714	2e-14
Q9ARD5	54	Low temperature-induced p	N/A	no	0.913	0.981	0.641	3e-14
P68179	54	Low temperature-induced p	N/A	no	0.896	0.962	0.653	2e-13
P68178	54	Salt stress-induced hydro	N/A	no	0.896	0.962	0.653	2e-13
O82232	75	UPF0057 membrane protein	no	no	0.896	0.693	0.584	2e-10

>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 48/53 (90%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
           TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

Plays a role in the regulation of membrane potential. Could mediate a proton leak.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 48/53 (90%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
           TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 50/57 (87%), Gaps = 1/57 (1%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct: 1  MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 49/53 (92%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct: 2  STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 49/53 (92%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct: 2  STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
          MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 46/53 (86%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +  
Sbjct: 2  ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLVA 54

Hordeum vulgare (taxid: 4513)

>sp|P68179|LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 56
           +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY + 
Sbjct: 2  GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

>sp|P68178|ESI3_LOPEL Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 56
           +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY + 
Sbjct: 2  GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

Lophopyrum elongatum (taxid: 4588)

>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 4  GSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
           S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct: 3  SSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
257219544	57	cold induced plasma membrane protein [Ja	0.982	1.0	0.912	2e-20
356572886	57	PREDICTED: hydrophobic protein LTI6A-lik	0.982	1.0	0.859	2e-20
169743283	57	cold-induced plasma membrane protein [Mu	0.982	1.0	0.842	1e-19
35186896	54	Clt1 [Citrus trifoliata]	0.913	0.981	0.943	2e-19
255628709	57	unknown [Glycine max]	0.982	1.0	0.842	3e-19
224124306	57	stress-induced hydrophobic peptide [Popu	0.982	1.0	0.824	6e-19
288300156	57	stress-induced hydrophobic peptide [Clei	0.982	1.0	0.824	6e-19
378792862	726	PM-YC3.6-Lti6b [Binary expression vector	0.913	0.073	0.773	7e-19
388501566	54	unknown [Lotus japonicus] gi|388522485|g	0.913	0.981	0.886	8e-19
255543046	56	Hydrophobic protein LTI6A, putative [Ric	0.965	1.0	0.842	1e-18

>gi|257219544|gb|ACV50425.1| cold induced plasma membrane protein [Jatropha curcas]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 53/57 (92%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          M    TATC+DILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK
Sbjct: 1  MPSEGTATCIDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572886|ref|XP_003554596.1| PREDICTED: hydrophobic protein LTI6A-like [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 54/57 (94%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD STATC+DILLA+ILPPLGVFLK+GCK EFWICL+LT+ GYIPGIIYAVYAITK
Sbjct: 1  MADDSTATCIDILLAIILPPLGVFLKYGCKVEFWICLVLTLFGYIPGIIYAVYAITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169743283|gb|ACA66247.1| cold-induced plasma membrane protein [Musa ABB Group]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 52/57 (91%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD  TA C+DILLA+ILPPLGVFLKFGC+ EFWICLLLT+ GYIPGIIYAVYAITK
Sbjct: 1  MADKGTANCIDILLAIILPPLGVFLKFGCEMEFWICLLLTLFGYIPGIIYAVYAITK 57

Source: Musa ABB Group

Species: Musa x paradisiaca

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|35186896|gb|AAQ84111.1| Clt1 [Citrus trifoliata]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
           TATCVDI+LAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVY ITK
Sbjct: 2  GTATCVDIILAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 54

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255628709|gb|ACU14699.1| unknown [Glycine max]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 53/57 (92%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD STAT +DILLA+ILPPLGVFLK+GCK EFWICL+LT+ GYIPGIIYAVYAITK
Sbjct: 1  MADDSTATYIDILLAIILPPLGVFLKYGCKVEFWICLVLTLFGYIPGIIYAVYAITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124306|ref|XP_002329990.1| stress-induced hydrophobic peptide [Populus trichocarpa] gi|222871415|gb|EEF08546.1| stress-induced hydrophobic peptide [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 51/57 (89%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD  TATC+DILLA+ILPPLGVFLKFGC  EFWICLLLT  GY+PGIIYA+YAITK
Sbjct: 1  MADEGTATCIDILLAIILPPLGVFLKFGCGVEFWICLLLTFFGYLPGIIYAIYAITK 57

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288300156|gb|ADC45381.1| stress-induced hydrophobic peptide [Cleistogenes songorica]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 52/57 (91%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MAD  TA+C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGY+PGIIYAVYAITK
Sbjct: 1  MADEGTASCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYLPGIIYAVYAITK 57

Source: Cleistogenes songorica

Species: Cleistogenes songorica

Genus: Cleistogenes

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378792862|gb|AFC41201.1| PM-YC3.6-Lti6b [Binary expression vector PM-YC3.6-LTI6b]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 49/53 (92%)

Query: 5   STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
           STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct: 674 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 726

Source: Binary expression vector PM-YC3.6-LTI6b

Species: Binary expression vector PM-YC3.6-LTI6b

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|388501566|gb|AFK38849.1| unknown [Lotus japonicus] gi|388522485|gb|AFK49304.1| unknown [Lotus japonicus]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 51/53 (96%)

Query: 5  STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
           TATCVDI+LA+ILPPLGVFL+FGCK EFWICLLLTILGYIPGIIYA+YAITK
Sbjct: 2  GTATCVDIILAIILPPLGVFLRFGCKVEFWICLLLTILGYIPGIIYAIYAITK 54

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543046|ref|XP_002512586.1| Hydrophobic protein LTI6A, putative [Ricinus communis] gi|223548547|gb|EEF50038.1| Hydrophobic protein LTI6A, putative [Ricinus communis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 54/57 (94%), Gaps = 1/57 (1%)

Query: 1  MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
          MADG+ ATC+DILLA+ILPPLGVFLK+GCK EFWICL+LT+ GYIPGIIYAVYAITK
Sbjct: 1  MADGA-ATCIDILLAIILPPLGVFLKYGCKVEFWICLILTLFGYIPGIIYAVYAITK 56

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
UNIPROTKB|Q8H5T6	56	LTI6A "Hydrophobic protein LTI	0.965	1.0	0.789	1.3e-20
TAIR|locus:2074419	54	RCI2B "RARE-COLD-INDUCIBLE 2B"	0.913	0.981	0.773	1.2e-19
TAIR|locus:2074509	54	RCI2A "AT3G05880" [Arabidopsis	0.913	0.981	0.754	1.9e-19
TAIR|locus:505006307	54	AT2G38905 "AT2G38905" [Arabido	0.827	0.888	0.708	2.3e-16
TAIR|locus:1006230338	77	AT4G28088 "AT4G28088" [Arabido	0.931	0.701	0.589	1.3e-13
TAIR|locus:2027518	52	AT1G57550 "AT1G57550" [Arabido	0.827	0.923	0.541	4.4e-13
TAIR|locus:2118741	73	AT4G30650 "AT4G30650" [Arabido	0.931	0.739	0.642	4.4e-13
TAIR|locus:2061501	75	AT2G24040 [Arabidopsis thalian	0.879	0.68	0.596	5.6e-13
WB|WBGene00020736	57	T23F2.3 [Caenorhabditis elegan	0.827	0.842	0.647	3.1e-12
WB|WBGene00020737	57	T23F2.4 [Caenorhabditis elegan	0.827	0.842	0.647	3.9e-12

UNIPROTKB|Q8H5T6 LTI6A "Hydrophobic protein LTI6A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/57 (78%), Positives = 50/57 (87%)

Query:     1 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
             MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:     1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

GO:0005886 "plasma membrane" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2074419 RCI2B "RARE-COLD-INDUCIBLE 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 41/53 (77%), Positives = 49/53 (92%)

Query:     5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
             STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:     2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2074509 RCI2A "AT3G05880" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 40/53 (75%), Positives = 49/53 (92%)

Query:     5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
             STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:     2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042538 "hyperosmotic salinity response" evidence=IGI;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009409 "response to cold" evidence=TAS

TAIR|locus:505006307 AT2G38905 "AT2G38905" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/48 (70%), Positives = 44/48 (91%)

Query:     8 TCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
             T ++I+LA++LPP+GVFL++GC  EFWICLLLTILGYIPGIIYA+Y +
Sbjct:     5 TFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:1006230338 AT4G28088 "AT4G28088" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query:     1 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
             MA+G    C +I++A+++PPLGV L+ GC   EF ICL+LT+LGY+PGIIYA+YAI
Sbjct:     1 MANGCEICC-EIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2027518 AT1G57550 "AT1G57550" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 26/48 (54%), Positives = 40/48 (83%)

Query:    10 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
             +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:     5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2118741 AT4G30650 "AT4G30650" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/56 (64%), Positives = 42/56 (75%)

Query:     1 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
             MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:     1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2061501 AT2G24040 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query:     5 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
             S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:     4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

GO:0005576 "extracellular region" evidence=ISM

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

WB|WBGene00020736 T23F2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/51 (64%), Positives = 38/51 (74%)

Query:     8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
             TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:     4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00020737 T23F2.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/51 (64%), Positives = 39/51 (76%)

Query:     8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
             TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:     4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS19	PMP3_CRYNB	No assigned EC number	0.6603	0.8620	0.8771	N/A	no
P0CS18	PMP3_CRYNJ	No assigned EC number	0.6603	0.8620	0.8771	yes	no
Q0DKW8	LTI6B_ORYSJ	No assigned EC number	0.8301	0.9137	0.9636	yes	no
Q9ARD5	LT02_HORVU	No assigned EC number	0.6415	0.9137	0.9814	N/A	no
Q9ZNS6	RCI2B_ARATH	No assigned EC number	0.7735	0.9137	0.9814	yes	no
P74805	Y1169_SYNY3	No assigned EC number	0.52	0.8448	0.9074	N/A	no
Q6BVN0	PMP3_DEBHA	No assigned EC number	0.7	0.6896	0.7017	yes	no
Q22701	YCU4_CAEEL	No assigned EC number	0.6470	0.8275	0.8421	yes	no
P68178	ESI3_LOPEL	No assigned EC number	0.6538	0.8965	0.9629	N/A	no
P68179	LT01_HORVU	No assigned EC number	0.6538	0.8965	0.9629	N/A	no
Q9Y068	RIC1_PHYIN	No assigned EC number	0.5185	0.8793	0.8947	N/A	no
A2Y075	LTI6B_ORYSI	No assigned EC number	0.8301	0.9137	0.9636	N/A	no
P0AE43	YQAE_ECOL6	No assigned EC number	0.5	0.8275	0.9230	yes	no
Q8H5T6	LTI6A_ORYSJ	No assigned EC number	0.7894	0.9655	1.0	no	no
Q871V2	PMP3_NEUCR	No assigned EC number	0.5614	0.9655	0.9824	N/A	no
Q4WYA5	PMP3_ASPFU	No assigned EC number	0.6521	0.7931	0.8070	yes	no
Q9I5W9	Y567_PSEAE	No assigned EC number	0.625	0.6896	0.7692	yes	no
Q9ZNQ7	RCI2A_ARATH	No assigned EC number	0.7547	0.9137	0.9814	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0131002001 stress-induced hydrophobic peptide (57 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	58
pfam01679	51	pfam01679, Pmp3, Proteolipid membrane potential mo	5e-16
COG0401	56	COG0401, COG0401, Uncharacterized homolog of Blt10	8e-11

>gnl|CDD|201919 pfam01679, Pmp3, Proteolipid membrane potential modulator

 Score = 63.6 bits (156), Expect = 5e-16
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query: 8  TCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
            + I+LA+ LPPL VFLK GC  +F I +LLT+LGYIPGII+A+Y I K
Sbjct: 2  DILLIILAIFLPPLAVFLKRGCGKDFLINILLTLLGYIPGIIHALYIILK 51

Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Length = 51

>gnl|CDD|223478 COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]

 Score = 50.7 bits (122), Expect = 8e-11
 Identities = 28/48 (58%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 12 ILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITKK 58
          I+LA+ LPPLGVFL+ G    +F I +LLT+LGYIPGII+A+Y I + 
Sbjct: 9  IVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
COG0401	56	Uncharacterized homolog of Blt101 [Function unknow	99.94
KOG1773	63	consensus Stress responsive protein [General funct	99.93
PF01679	51	Pmp3: Proteolipid membrane potential modulator; In	99.92
PF14373	43	Imm_superinfect: Superinfection immunity protein	92.26

>COG0401 Uncharacterized homolog of Blt101 [Function unknown]

Probab=99.94  E-value=4.1e-27  Score=134.37  Aligned_cols=54  Identities=52%  Similarity=0.939  Sum_probs=51.7

Q ss_pred             chHHHHHHHHHHhhhhhHHHHHHc-CchHHHHHHHHHHHHhhhhhhhhheeeecC
Q 035437            5 STATCVDILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITKK   58 (58)
Q Consensus         5 ~~~~~~~~ilai~lPPlaV~~~~G-~~~~~~inllLtllg~iPg~ihA~yii~~~   58 (58)
                      +.+|++++++|+|+||++|++++| |++|+|+|++||++||+||++||+|++.|+
T Consensus         2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            678999999999999999999999 579999999999999999999999999986

>KOG1773 consensus Stress responsive protein [General function prediction only]

Probab=99.93  E-value=5.2e-27  Score=136.65  Aligned_cols=57  Identities=49%  Similarity=0.877  Sum_probs=54.5

Q ss_pred             CCCCchHHHHHHHHHHhhhhhHHHHHHc-CchHHHHHHHHHHHHhhhhhhhhheeeecC
Q 035437            1 MADGSTATCVDILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITKK   58 (58)
Q Consensus         1 m~~~~~~~~~~~ilai~lPPlaV~~~~G-~~~~~~inllLtllg~iPg~ihA~yii~~~   58 (58)
                      |+. |++++.++++|+++||+||++++| |++|+++|++||++||+||+|||+|+++++
T Consensus         1 m~~-~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~   58 (63)
T KOG1773|consen    1 MAT-DCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFR   58 (63)
T ss_pred             CCC-cHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEe
Confidence            677 999999999999999999999998 899999999999999999999999999864

>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S

Probab=99.92  E-value=2.1e-25  Score=124.85  Aligned_cols=51  Identities=59%  Similarity=1.095  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHcCchHHHHHHHHHHHHhhhhhhhhheeeec
Q 035437            7 ATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK   57 (58)
Q Consensus         7 ~~~~~~ilai~lPPlaV~~~~G~~~~~~inllLtllg~iPg~ihA~yii~~   57 (58)
                      +|++++++|+++||+||++++||++|+++|++||++||+||++||+|+++|
T Consensus         1 ~~~~~~ilai~lPPlaV~~~~g~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    1 MDILLIILAIFLPPLAVFLKKGCSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             CcHHHHHHHHHcccHHHHHHcCCchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            368999999999999999999999999999999999999999999999986

pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane

>PF14373 Imm_superinfect: Superinfection immunity protein

Probab=92.26  E-value=0.3  Score=26.40  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=25.1

Q ss_pred             hhHHHHHHc---CchHHHHHHHH--HHHHhhhhhhhhh
Q 035437           20 PLGVFLKFG---CKAEFWICLLL--TILGYIPGIIYAV   52 (58)
Q Consensus        20 PlaV~~~~G---~~~~~~inllL--tllg~iPg~ihA~   52 (58)
                      |-.+..+++   ...-+.+|++|  |.+||+-+.++|+
T Consensus         5 P~iiA~~r~~~~~~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen    5 PSIIAFRRKHPNKWAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hHHHHHHcCCCcchhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            444455554   35678999999  9999999999885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00