Citrus Sinensis ID: 035493
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.954 | 0.623 | 0.394 | 4e-69 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | no | 0.957 | 0.637 | 0.405 | 4e-67 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.954 | 0.608 | 0.417 | 1e-66 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.957 | 0.616 | 0.402 | 1e-66 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.963 | 0.636 | 0.366 | 3e-61 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.963 | 0.625 | 0.395 | 5e-61 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.931 | 0.604 | 0.391 | 6e-60 | |
| Q9SCW7 | 464 | Sugar transporter ERD6-li | no | no | 0.937 | 0.616 | 0.379 | 8e-59 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.967 | 0.637 | 0.382 | 2e-57 | |
| Q4F7G0 | 462 | Sugar transporter ERD6-li | no | no | 0.940 | 0.621 | 0.370 | 8e-57 |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/357 (39%), Positives = 205/357 (57%), Gaps = 66/357 (18%)
Query: 5 DSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-------- 56
D VILST VA+C + +YGC+ GY+S E I +L LS+ ++S FGS
Sbjct: 23 DRRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAV 82
Query: 57 ----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIP 100
+W D FC+FGWL+IAF+K+ + L LGR SLGIG+ L++YV+P
Sbjct: 83 GALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVP 142
Query: 101 IYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFI 160
+YIAEITPK+VRGAFTA+NQLL SG+S+IY GTV++WR +A+I A+PC+LQ +G+FFI
Sbjct: 143 VYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFI 202
Query: 161 PESPRW-----LKKSLKLLYSALRGKTADISMESADIR---------------------- 193
PESPRW L K ++ LRGK D+S E+A+I+
Sbjct: 203 PESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKY 262
Query: 194 -----VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLP 248
VG+GLM++Q L G++ I Y++ IF A G+ ++ + +P
Sbjct: 263 RRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGS----------MIFGVFVIP 312
Query: 249 AIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
+ ++L D+ GRRPLLLAS +G + +I ++F LQ N E+ P+ ++ I+
Sbjct: 313 KALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPELIPIFVFVNIL 369
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 207/358 (57%), Gaps = 66/358 (18%)
Query: 4 SDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------- 56
D VILST VA+C S +YGC+ GY+S E I +L LS+ ++S FGS
Sbjct: 13 DDRRITACVILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGA 72
Query: 57 -----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99
+W DLFCIFGWL+IAF+K+ L LGR SLGIG+ L +YV+
Sbjct: 73 VGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVV 132
Query: 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFF 159
P+YIAEITPK+VRGAF+A+ LL SG+S+IY GTV++WR LA+I A+PC + V+G++F
Sbjct: 133 PVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYF 192
Query: 160 IPESPRWLKK--SLKLLYSA---LRGKTADISMESADIR--------------------- 193
IPESPRWL K S+K + ++ LRGK AD+S E+A+I+
Sbjct: 193 IPESPRWLAKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDMFQKK 252
Query: 194 ------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247
VG+GLM++Q L G++ I Y++ IF A G+ ++ + +
Sbjct: 253 YRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGS----------MIFGVFVI 302
Query: 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
P + ++L D+ GRRPLLLAS +G + +I ++F LQ+ N + E PV +I I+
Sbjct: 303 PKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINIL 360
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 198/359 (55%), Gaps = 68/359 (18%)
Query: 2 QGSDSSA--IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--- 56
Q DS VILST +A+CGS ++G S+GY+S E GI DL LS+ ++S F S
Sbjct: 23 QNDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLST 82
Query: 57 ---------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELM 95
MW+SDL CI GW +IAF+KD L GR S GIGL L+
Sbjct: 83 LGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLI 142
Query: 96 TYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVV 155
+YV+P+YIAEI+PK+VRG FT NQLL SGL+++Y G ++WR LAL+ A+PC +QV+
Sbjct: 143 SYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVI 202
Query: 156 GLFFIPESPRWLKK--SLKLLYSA---LRGKTADISMESADIR----------------- 193
GLFF+PESPRWL K S K L ++ LRG ADIS E++DI
Sbjct: 203 GLFFVPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDL 262
Query: 194 ----------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTA 243
VG+GLM++Q GS+A+ YAS I A G+ + L +
Sbjct: 263 FQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTLLGLFMI------ 316
Query: 244 IIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYI 302
P + V+L DK GRRPLLL S G C++ +I +AF LQ E+TPV +I
Sbjct: 317 ----PKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFI 371
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 201/358 (56%), Gaps = 66/358 (18%)
Query: 4 SDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------- 56
S+ VILST VA+CGS ++G + GY+S E G+ DL LS+ ++S FGS
Sbjct: 23 SECRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAA 82
Query: 57 -----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99
MW+SD CI GWL+IAF+K+ L GR GIG L +YV+
Sbjct: 83 IGALFCGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVV 142
Query: 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFF 159
P+YIAEITPK+VRG FT +NQLL +GL++IY G ++WR LAL+ A+PC +QV+GLFF
Sbjct: 143 PVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFF 202
Query: 160 IPESPRWLKK--SLKLLYSA---LRGKTADISMESADIR--------------------- 193
+PESPRWL K S K L ++ LRG+ ADIS E+++I+
Sbjct: 203 VPESPRWLAKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRK 262
Query: 194 ------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247
VG+GLM++Q GSAA+ YAS IF A G + I +
Sbjct: 263 YRYTLVVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVAIGTT----------MLGIFVI 312
Query: 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
P + ++L DK GRRPLL+ S G ++ ++ +AF LQ +E+TP+L++I +M
Sbjct: 313 PKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPILSFICVM 370
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 204/360 (56%), Gaps = 66/360 (18%)
Query: 2 QGSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS----- 56
+ ++ P +I ST + + S +G ++GY++ + I +DL LSL ++S+FGS
Sbjct: 16 KEDSANTTPLLIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFG 75
Query: 57 -------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTY 97
+W++DLFCI GWLAI+ +KD L +GR +GIG+ L++Y
Sbjct: 76 GMIGAIFSAKAASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISY 135
Query: 98 VIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGL 157
V+P+YIAEITPK+VRGAFT +NQLL G++V+Y G +SWR LA+I ++PC +QV+GL
Sbjct: 136 VVPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGL 195
Query: 158 FFIPESPRWL-----KKSLKLLYSALRGKTADISMESADIR------------------- 193
FFIPESPRWL K + + LRG+ DI E+ +I+
Sbjct: 196 FFIPESPRWLAKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFE 255
Query: 194 --------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAII 245
+G+GLM++Q L G+A I+ Y S +F +L M +L ++I
Sbjct: 256 KRYAHQLTIGIGLMLLQQLCGTAGISSYGSTLF---KLAGFPARIGMMVL-------SLI 305
Query: 246 QLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
+P + ++L D+ GRRPLL+ S +G CLS +A+AF ++D ++TP+ +IGI+
Sbjct: 306 VVPKSLMGLILVDRWGRRPLLMTSALGLCLSCITLAVAFGVKDVPGIGKITPIFCFIGIL 365
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 197/362 (54%), Gaps = 68/362 (18%)
Query: 2 QGSDSSAIPAVILST--LVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--- 56
+ DSSA L VA+ GS +G ++GYSSPV++ +T +L LS+ EYS+FGS
Sbjct: 20 ENQDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILT 79
Query: 57 ---------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELM 95
M S++FCI GWLAI SK A L +GR +G G+ +
Sbjct: 80 IGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVF 139
Query: 96 TYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVV 155
++V+P+YIAEITPK +RG FT +QLL+ G+SV YL+G+ + WR LALI +PC++Q++
Sbjct: 140 SFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMM 199
Query: 156 GLFFIPESPRWLKK-----SLKLLYSALRGKTADISMESADIR----------------- 193
GLF IPESPRWL K ++ LRG++ADIS ES +I+
Sbjct: 200 GLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDL 259
Query: 194 ----------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTA 243
VGVGLMV+Q G IA YAS IF +A + + G +M
Sbjct: 260 FQPQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAM----------V 309
Query: 244 IIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIG 303
++Q+P VLL DKSGRRPLLL S GTC+ ++ L+F LQ + LA G
Sbjct: 310 VVQIPMTTLGVLLMDKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTG 369
Query: 304 IM 305
++
Sbjct: 370 VL 371
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 195/350 (55%), Gaps = 66/350 (18%)
Query: 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--------------- 56
V+ ST V++CGS +GC+ GYSS + GI DLGLS+ +YS+FGS
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 57 ---------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEIT 107
MW + +FCIFGW+A+A +KD+ L +GR S G + L++YVIP+YIAEIT
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 108 PKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWL 167
PK+VRGAF ANQL+ + GLS+ Y++G V WR LALI +PC LQVV LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 168 -----KKSLKLLYSALRGKTADISMESADIR---------------------------VG 195
+K + +LRG ADIS E+ I+ +G
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 196 VGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVL 255
VGLM++Q L GS+ + Y +F + G+ ++ A+I +P + ++
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSSIGS----------MILAVIMIPKALLGLI 321
Query: 256 LTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
L +K GRRPLLLAS G C +++ +FC + +E+TP+ IG++
Sbjct: 322 LVEKMGRRPLLLASTGGMCFFSLLLSFSFCFRSYGMLDELTPIFTCIGVV 371
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCW7|ERDL1_ARATH Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 197/353 (55%), Gaps = 67/353 (18%)
Query: 4 SDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------- 56
S SS ++LST VA+ GS YGC++ YSSP ++ I +LGLS+ +YS F S
Sbjct: 19 SSSSITCGLLLSTSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGM 78
Query: 57 -----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99
MW++D+FCIFGWLA+AF+ D L +GR LG G+ L++YV+
Sbjct: 79 ITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISYVV 138
Query: 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFF 159
P+YIAEITPK RG F+ +NQLL + G+S+++ G WR LAL++A+PC +Q++ LFF
Sbjct: 139 PVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFF 198
Query: 160 IPESPRWL-----KKSLKLLYSALRGKTADISMESADIRVGV---------GL------- 198
IPESPRWL ++ L++ LRG+ DI E+A+IR V GL
Sbjct: 199 IPESPRWLAMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSGLKDLFNMK 258
Query: 199 -----------MVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247
M++Q GS+AI+ YA+ IF A + G + A+I +
Sbjct: 259 NAHPLIIGLGLMLLQQFCGSSAISAYAARIFDTAGFPSDIGTS----------ILAVILV 308
Query: 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEV-TPVL 299
P + + D+ GRRPLL++S IG C+ +I L++ LQ+ + E +P+L
Sbjct: 309 PQSIIVMFAVDRCGRRPLLMSSSIGLCICSFLIGLSYYLQNHGDFQEFCSPIL 361
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 187/361 (51%), Gaps = 66/361 (18%)
Query: 1 MQGSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---- 56
M GS V LST VA+CGS A+G GYSSP +A I DL L++ E+S+FGS
Sbjct: 17 MAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTF 76
Query: 57 --------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMT 96
AM +S FC+ GWLAI F+K +L LGR + G G+ +
Sbjct: 77 GAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFS 136
Query: 97 YVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVG 156
YV+PI+IAEI PK RGA T NQ+L+ +G+SV +++GT+V+WR LALI +PC +G
Sbjct: 137 YVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLG 196
Query: 157 LFFIPESPRWLKK-----SLKLLYSALRGKTADISMESADIR------------------ 193
LFFIPESPRWL K + LRGK ADIS E+A+I+
Sbjct: 197 LFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLF 256
Query: 194 ---------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAI 244
+ GLMV Q G I Y S IF A G ++ A+
Sbjct: 257 QRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGM----------IIYAV 306
Query: 245 IQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGI 304
+Q+ + + D++GR+PLLL S G + I A++F L+ + +E PVLA +GI
Sbjct: 307 LQVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGI 366
Query: 305 M 305
M
Sbjct: 367 M 367
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 192/359 (53%), Gaps = 72/359 (20%)
Query: 6 SSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--------- 56
SS ++LST V + GS YGC++ YSSP ++ I +LGLS+ +YS F S
Sbjct: 19 SSFTSGLLLSTSVVVAGSFCYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMIT 78
Query: 57 ---------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPI 101
MW+SD+ CIFGWLA+AF+ D L GR LG G+ L++YV+P+
Sbjct: 79 AVFSGKISALVGRRQTMWISDVCCIFGWLAVAFAHDIIMLNTGRLFLGFGVGLISYVVPV 138
Query: 102 YIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIP 161
YIAEITPK RG F+ +NQLL G+S+++ G WR LAL++A+P QV+ LFFIP
Sbjct: 139 YIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICLFFIP 198
Query: 162 ESPRWL-----KKSLKLLYSALRGKTADISMESADIRVGVGL------------------ 198
ESPRWL + L++ LRG+ +DI E+A+IR V +
Sbjct: 199 ESPRWLAMYGQDQELEVSLKKLRGENSDILKEAAEIRETVEISRKESQSGIRDLFHIGNA 258
Query: 199 ---------MVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLT---AIIQ 246
M++Q GSAAI+ YA+ IF A F +D+ T A+I
Sbjct: 259 HSLIIGLGLMLLQQFCGSAAISAYAARIFDKAG-------------FPSDIGTTILAVIL 305
Query: 247 LPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
+P + +L D+ GRRPLL+ S IG C+ I L++ LQ + ++ V+ +G++
Sbjct: 306 IPQSIVVMLTVDRWGRRPLLMISSIGMCICSFFIGLSYYLQKNGEFQKLCSVMLIVGLV 364
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| 298205029 | 474 | unnamed protein product [Vitis vinifera] | 0.934 | 0.601 | 0.467 | 6e-80 | |
| 359487977 | 920 | PREDICTED: sugar transporter ERD6-like 5 | 0.934 | 0.309 | 0.467 | 7e-80 | |
| 224130930 | 478 | predicted protein [Populus trichocarpa] | 0.963 | 0.615 | 0.458 | 1e-79 | |
| 255542516 | 476 | sugar transporter, putative [Ricinus com | 0.957 | 0.613 | 0.466 | 2e-79 | |
| 310877856 | 475 | putative ERD6-like transporter [Vitis vi | 0.934 | 0.6 | 0.465 | 1e-78 | |
| 298205028 | 476 | unnamed protein product [Vitis vinifera] | 0.927 | 0.594 | 0.469 | 2e-78 | |
| 255542518 | 492 | D-xylose-proton symporter, putative [Ric | 0.957 | 0.593 | 0.466 | 1e-77 | |
| 310877858 | 477 | putative ERD6-like transporter [Vitis vi | 0.927 | 0.593 | 0.468 | 7e-77 | |
| 359487971 | 633 | PREDICTED: sugar transporter ERD6-like 3 | 0.967 | 0.466 | 0.434 | 1e-75 | |
| 298205023 | 483 | unnamed protein product [Vitis vinifera] | 0.967 | 0.610 | 0.434 | 2e-75 |
| >gi|298205029|emb|CBI34336.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 211/351 (60%), Gaps = 66/351 (18%)
Query: 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-------------- 56
AV+ ST VA+C S YGC+ GY+SP E+GI DL LS+ EYS FGS
Sbjct: 38 AVVFSTAVAVCASFTYGCAAGYTSPAESGIIDDLTLSVAEYSFFGSILTIGGILGAAISG 97
Query: 57 ----------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEI 106
MW S++FC GWLAIAF+KD W L LGR S+G G+ L+ YV+P+YIAEI
Sbjct: 98 KITDLIGRRGTMWFSEIFCTMGWLAIAFAKDHWWLDLGRLSIGFGIGLICYVVPVYIAEI 157
Query: 107 TPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRW 166
TP+N+RG FT+A+ L++ G S+ + VGT++SWR LALI A+PC+LQV+GLFFIPESPRW
Sbjct: 158 TPQNIRGGFTSAHMLMICCGFSLTFFVGTIISWRILALIGAIPCILQVIGLFFIPESPRW 217
Query: 167 LKK-----SLKLLYSALRGKTADISMESADIR---------------------------V 194
L K L LRG ADIS E+A+I+ V
Sbjct: 218 LAKVGREEDLVAALRRLRGVNADISQEAAEIQDYTEAFQHLSEARILDLLQRRYAHSLIV 277
Query: 195 GVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254
GVGLMV+Q GS AIA YAS IF +A+ + G +M AI+Q+P + +V
Sbjct: 278 GVGLMVLQQFGGSNAIAYYASAIFESADFSSTFGIRAM----------AILQIPVTLLAV 327
Query: 255 LLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
L DK GRRPLL+ S G CLS ++AL+F LQD + W E+TP+L IGI+
Sbjct: 328 FLIDKCGRRPLLMVSAAGMCLSCLVVALSFLLQDLHQWKEITPILVLIGIL 378
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487977|ref|XP_002263553.2| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 211/351 (60%), Gaps = 66/351 (18%)
Query: 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-------------- 56
AV+ ST VA+C S YGC+ GY+SP E+GI DL LS+ EYS FGS
Sbjct: 484 AVVFSTAVAVCASFTYGCAAGYTSPAESGIIDDLTLSVAEYSFFGSILTIGGILGAAISG 543
Query: 57 ----------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEI 106
MW S++FC GWLAIAF+KD W L LGR S+G G+ L+ YV+P+YIAEI
Sbjct: 544 KITDLIGRRGTMWFSEIFCTMGWLAIAFAKDHWWLDLGRLSIGFGIGLICYVVPVYIAEI 603
Query: 107 TPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRW 166
TP+N+RG FT+A+ L++ G S+ + VGT++SWR LALI A+PC+LQV+GLFFIPESPRW
Sbjct: 604 TPQNIRGGFTSAHMLMICCGFSLTFFVGTIISWRILALIGAIPCILQVIGLFFIPESPRW 663
Query: 167 LKK-----SLKLLYSALRGKTADISMESADIR---------------------------V 194
L K L LRG ADIS E+A+I+ V
Sbjct: 664 LAKVGREEDLVAALRRLRGVNADISQEAAEIQDYTEAFQHLSEARILDLLQRRYAHSLIV 723
Query: 195 GVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254
GVGLMV+Q GS AIA YAS IF +A+ + G +M AI+Q+P + +V
Sbjct: 724 GVGLMVLQQFGGSNAIAYYASAIFESADFSSTFGIRAM----------AILQIPVTLLAV 773
Query: 255 LLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
L DK GRRPLL+ S G CLS ++AL+F LQD + W E+TP+L IGI+
Sbjct: 774 FLIDKCGRRPLLMVSAAGMCLSCLVVALSFLLQDLHQWKEITPILVLIGIL 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130930|ref|XP_002328411.1| predicted protein [Populus trichocarpa] gi|222838126|gb|EEE76491.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/360 (45%), Positives = 219/360 (60%), Gaps = 66/360 (18%)
Query: 2 QGSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS----- 56
+ DSS P ++LST +A+CGS YG +VGYSS E+GI DLGLS+ EYSVFGS
Sbjct: 27 RSHDSSITPILVLSTFIAVCGSFCYGFAVGYSSAAESGIRKDLGLSVSEYSVFGSILTIG 86
Query: 57 -------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTY 97
MWLS++FCI GWL IAF+KDAW L +GR +G+G+ L+TY
Sbjct: 87 GMIGAIPSGKIADFIGRKRTMWLSEIFCIPGWLLIAFAKDAWWLDIGRLLIGVGVGLITY 146
Query: 98 VIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGL 157
V+P+YIAEITP N RG FT+A QL+V+ G +++Y +G ++SWRAL+LI + C+LQ+VGL
Sbjct: 147 VVPVYIAEITPMNHRGGFTSAQQLMVSLGFALVYFIGNIISWRALSLIVLISCILQLVGL 206
Query: 158 FFIPESPRWL-----KKSLKLLYSALRGKTADISMESADIR------------------- 193
FFIPESPRWL +K + LRG DIS E+ DIR
Sbjct: 207 FFIPESPRWLAKLDREKEFETTLQWLRGMNVDISQEANDIRDTIDVYQHNSKAKFLSLFQ 266
Query: 194 --------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAII 245
VGVGLMV+Q G++A+A Y+S I+ A I G + I+
Sbjct: 267 RKYAYPIIVGVGLMVLQQFGGTSAVAYYSSSIYVKANFSTIIGTTT----------AGIM 316
Query: 246 QLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
Q+PA +A VLL D SGRR LLL S IGTCLSL ++ L+F LQ+ ++ E+TP+L +IGI+
Sbjct: 317 QIPASIAGVLLLDISGRRRLLLVSAIGTCLSLVLVGLSFLLQELHYLKELTPILTFIGIL 376
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 211/358 (58%), Gaps = 66/358 (18%)
Query: 4 SDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------- 56
++SS PAV+ ST++AICGS GC+ GYSSP E+GI DLG+S+ YSVFGS
Sbjct: 30 NESSVTPAVVFSTIIAICGSFGSGCATGYSSPAESGIREDLGMSVAAYSVFGSVITAGGV 89
Query: 57 -----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99
MW+S+LF I GW AI + AW L LGR +GIG+ ++ +V+
Sbjct: 90 MGSLVSGKMADVIGRRSTMWVSELFFIIGWFAIVSGQAAWLLDLGRLLMGIGVGIIGFVV 149
Query: 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFF 159
P+YI EITPKNVRGAF A NQ ++ G+S+ + +GTVVSWR LALI A PC L VG+FF
Sbjct: 150 PVYITEITPKNVRGAFAATNQFMICCGISLAFFIGTVVSWRTLALICAAPCALHAVGVFF 209
Query: 160 IPESPRWLK-----KSLKLLYSALRGKTADISMESADI---------------------- 192
IPESPRWL K ++++ LRGK AD+S E+A I
Sbjct: 210 IPESPRWLAKIGRVKEVEVILQRLRGKKADVSQEAASIIDYTDTFQGHSKAGLLDLFQWR 269
Query: 193 -----RVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247
G+G+M Q G+ AIA YAS IF A+ + G SM AIIQ+
Sbjct: 270 YAHALTAGIGIMAFQQFGGTNAIAFYASSIFEEADFSSSVGLISM----------AIIQI 319
Query: 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
PA+ SVLLTDK+GRRPLL+ S G CLS II LAFCLQ + E+TP+L YIGIM
Sbjct: 320 PAVAISVLLTDKAGRRPLLMVSASGMCLSCLIIGLAFCLQGLDKAKEITPILVYIGIM 377
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877856|gb|ADP37159.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 211/352 (59%), Gaps = 67/352 (19%)
Query: 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-------------- 56
AV+ ST VA+C S YGC+ GY+SP E+GI DL LS+ EYS FGS
Sbjct: 38 AVVFSTAVAVCASFTYGCAAGYTSPAESGIIDDLTLSVAEYSFFGSILTIGGILGAAISG 97
Query: 57 ----------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEI 106
MW S++FC GWLAIAF+KD W L LGR S+G G+ L+ YV+P+YIAEI
Sbjct: 98 KITDLIGRRGTMWFSEIFCTMGWLAIAFAKDHWWLDLGRLSIGFGIGLICYVVPVYIAEI 157
Query: 107 TPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRW 166
TP+N+RG FT+A+ L++ G S+ + VGT++SWR LALI A+PC+LQV+GLFFIPESPRW
Sbjct: 158 TPQNIRGGFTSAHMLMICCGFSLTFFVGTIISWRILALIGAIPCILQVIGLFFIPESPRW 217
Query: 167 LKK-----SLKLLYSALRGKTADISMESADIR---------------------------V 194
L K L LRG ADIS E+A+I+ V
Sbjct: 218 LAKVGREEDLVAALRRLRGVNADISQEAAEIQDYTEAFQHLSEARILDLLQRRYAHSLIV 277
Query: 195 GVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254
GVGLMV+Q GS AIA YAS IF +A+ + G +M AI+Q+P + +V
Sbjct: 278 GVGLMVLQQFGGSNAIAYYASAIFESADFSSTFGIRAM----------AILQIPVTLLAV 327
Query: 255 LLTDKSGRRPLLLASDIGTCLSLSIIALAFCL-QDTNHWNEVTPVLAYIGIM 305
L DK GRRPLL+ S G CLS ++AL+F L QD + W E+TP+L IGI+
Sbjct: 328 FLIDKCGRRPLLMVSAAGMCLSCLVVALSFLLQQDLHQWKEITPILVLIGIL 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205028|emb|CBI34335.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/349 (46%), Positives = 206/349 (59%), Gaps = 66/349 (18%)
Query: 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---------------- 56
+ ST VA+CG+ GC+VGYSSP E+GI DLGLS+ EYSVFGS
Sbjct: 39 VFSTAVAVCGAFTNGCAVGYSSPAESGIMDDLGLSVAEYSVFGSILTIGGIVGAVICGKI 98
Query: 57 --------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITP 108
MW SD+FC+ GWLAIA +KD W L LGR S+G G+ L+ YV+P+YIAEI P
Sbjct: 99 TDLFGRRGTMWFSDIFCLMGWLAIALAKDYWWLDLGRLSIGFGIGLICYVVPVYIAEIMP 158
Query: 109 KNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWLK 168
KN+RG FT+AN L++ G S+ + VGTVVSWR LA+I A+PC+LQV+GLFFIPESPRWL
Sbjct: 159 KNIRGGFTSANTLMICCGSSLTFFVGTVVSWRILAVIGAIPCILQVIGLFFIPESPRWLA 218
Query: 169 K-----SLKLLYSALRGKTADISMESADIR---------------------------VGV 196
K L+ LRGK ADIS E+A+IR VGV
Sbjct: 219 KVGQEARLEAALQRLRGKNADISQEAAEIREYTEAFQQLSEARILDLFQRRYAHSLIVGV 278
Query: 197 GLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLL 256
GLMV+Q GS AI YAS IF +A G +M AI+Q+P ++L
Sbjct: 279 GLMVLQQFGGSNAILYYASSIFESAGFSTTFGTRAM----------AILQIPVTFLGIVL 328
Query: 257 TDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
DKSGRRPLL+AS G CL ++AL+F LQD +TP+ IG++
Sbjct: 329 IDKSGRRPLLMASAAGMCLGCLVVALSFLLQDLQQMKVLTPIFVLIGVL 377
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542518|ref|XP_002512322.1| D-xylose-proton symporter, putative [Ricinus communis] gi|223548283|gb|EEF49774.1| D-xylose-proton symporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 211/358 (58%), Gaps = 66/358 (18%)
Query: 4 SDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------- 56
DS P+V+ +T+VAICGS GC+ G+SSP ++GI DLG+S+ YSVFGS
Sbjct: 27 DDSLVTPSVVFNTMVAICGSFGTGCATGFSSPAQSGIMEDLGMSVAAYSVFGSVMTIGGV 86
Query: 57 -----------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99
MW+S+ F I GWLAIAF++ AW L GR +GIG+ + YV+
Sbjct: 87 IGALVNGTMADLIGRRYTMWVSEFFFITGWLAIAFTQVAWLLDFGRLLMGIGMGITLYVV 146
Query: 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFF 159
PIYIAEITPK++RG FTAANQLL + GLS+IY VGT++SW LALI AVP LQ VG+ F
Sbjct: 147 PIYIAEITPKHIRGRFTAANQLLTSCGLSLIYFVGTIISWHTLALIGAVPFALQAVGILF 206
Query: 160 IPESPRWL-----KKSLKLLYSALRGKTADISMESADIR--------------------- 193
IPESPRWL ++ L+ LRGK AD+S E+A+IR
Sbjct: 207 IPESPRWLAKVGRERELEGTLQYLRGKNADVSEEAANIRNYTGTFQGHSQTRFLDLFQFR 266
Query: 194 ------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247
VG+G+++ Q G AIA YAS IF A G SM AIIQ+
Sbjct: 267 YAHTLIVGIGILLFQQFGGINAIAYYASSIFGKAGFSPNLGQISM----------AIIQV 316
Query: 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGIM 305
PA SV+L DKSGRRPLL+ S G CLS +I +AF LQD + E+TP+L YIGI+
Sbjct: 317 PATAISVILIDKSGRRPLLMVSTSGMCLSCFLIGMAFWLQDLHKVKEITPILVYIGIL 374
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877858|gb|ADP37160.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 206/350 (58%), Gaps = 67/350 (19%)
Query: 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---------------- 56
+ ST VA+CG+ GC+VGYSSP E+GI DLGLS+ EYSVFGS
Sbjct: 39 VFSTAVAVCGAFTNGCAVGYSSPAESGIMDDLGLSVAEYSVFGSILTIGGIVGAVICGKI 98
Query: 57 --------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITP 108
MW SD+FC+ GWLAIA +KD W L LGR S+G G+ L+ YV+P+YIAEI P
Sbjct: 99 TDLFGRRGTMWFSDIFCLMGWLAIALAKDYWWLDLGRLSIGFGIGLICYVVPVYIAEIMP 158
Query: 109 KNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWLK 168
KN+RG FT+AN L++ G S+ + VGTVVSWR LA+I A+PC+LQV+GLFFIPESPRWL
Sbjct: 159 KNIRGGFTSANTLMICCGSSLTFFVGTVVSWRILAVIGAIPCILQVIGLFFIPESPRWLA 218
Query: 169 K-----SLKLLYSALRGKTADISMESADIR---------------------------VGV 196
K L+ LRGK ADIS E+A+IR VGV
Sbjct: 219 KVGQEARLEAALQRLRGKNADISQEAAEIREYTEAFQQLSEARILDLFQRRYAHSLIVGV 278
Query: 197 GLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLL 256
GLMV+Q GS AI YAS IF +A G +M AI+Q+P ++L
Sbjct: 279 GLMVLQQFGGSNAILYYASSIFESAGFSTTFGTRAM----------AILQIPVTFLGIVL 328
Query: 257 TDKSGRRPLLLASDIGTCLSLSIIALAFCL-QDTNHWNEVTPVLAYIGIM 305
DKSGRRPLL+AS G CL ++AL+F L QD +TP+ IG++
Sbjct: 329 IDKSGRRPLLMASAAGMCLGCLVVALSFLLQQDLQQMKVLTPIFVLIGVL 378
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487971|ref|XP_002263730.2| PREDICTED: sugar transporter ERD6-like 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 210/361 (58%), Gaps = 66/361 (18%)
Query: 1 MQGSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---- 56
+ G SS AVI ST+V +CG+ GC+ GYSSP E+GI DLGLS+ EYSVFGS
Sbjct: 34 VDGGSSSVTAAVIFSTVVVVCGTFNTGCAAGYSSPAESGIMEDLGLSVAEYSVFGSLWTA 93
Query: 57 --------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMT 96
AMW +D+FCI GWL IAF+KD W L GR ++G + L++
Sbjct: 94 GGIVGALISGRTADLIGRRGAMWFADIFCIMGWLLIAFAKDYWWLDFGRLAIGFAVGLIS 153
Query: 97 YVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVG 156
YV+ +YI+EI P+N+RG FT+A L++ G S+ Y VGTVVSWR LA+I AVPC+LQ VG
Sbjct: 154 YVVTVYISEIAPRNIRGGFTSAGSLMMCCGFSMFYFVGTVVSWRTLAIIGAVPCVLQAVG 213
Query: 157 LFFIPESPRWL-----KKSLKLLYSALRGKTADISMESADIR------------------ 193
LFF+PESPRWL +K L+ LRG+ ADI++E+ADI
Sbjct: 214 LFFVPESPRWLAKVGREKELEAALWRLRGERADIALEAADIMEYTKTFQQFPKATILELF 273
Query: 194 ---------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAI 244
VGVGLMV+ G A+ C+ S I +A+ G+ ++ AI
Sbjct: 274 RMRYAHSLIVGVGLMVLTQFSGVTAVQCFTSSILESADFSTTFGSRAI----------AI 323
Query: 245 IQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGI 304
+Q+P + SV+L DKSGRRPLL+ S G LS +I +F +QD N EVTP++ IG+
Sbjct: 324 LQIPVMAVSVVLIDKSGRRPLLMVSAAGMGLSSLLIGFSFLMQDMNQLKEVTPIVVLIGL 383
Query: 305 M 305
+
Sbjct: 384 L 384
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205023|emb|CBI34330.3| unnamed protein product [Vitis vinifera] gi|310877866|gb|ADP37164.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 210/361 (58%), Gaps = 66/361 (18%)
Query: 1 MQGSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---- 56
+ G SS AVI ST+V +CG+ GC+ GYSSP E+GI DLGLS+ EYSVFGS
Sbjct: 34 VDGGSSSVTAAVIFSTVVVVCGTFNTGCAAGYSSPAESGIMEDLGLSVAEYSVFGSLWTA 93
Query: 57 --------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMT 96
AMW +D+FCI GWL IAF+KD W L GR ++G + L++
Sbjct: 94 GGIVGALISGRTADLIGRRGAMWFADIFCIMGWLLIAFAKDYWWLDFGRLAIGFAVGLIS 153
Query: 97 YVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVG 156
YV+ +YI+EI P+N+RG FT+A L++ G S+ Y VGTVVSWR LA+I AVPC+LQ VG
Sbjct: 154 YVVTVYISEIAPRNIRGGFTSAGSLMMCCGFSMFYFVGTVVSWRTLAIIGAVPCVLQAVG 213
Query: 157 LFFIPESPRWL-----KKSLKLLYSALRGKTADISMESADIR------------------ 193
LFF+PESPRWL +K L+ LRG+ ADI++E+ADI
Sbjct: 214 LFFVPESPRWLAKVGREKELEAALWRLRGERADIALEAADIMEYTKTFQQFPKATILELF 273
Query: 194 ---------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAI 244
VGVGLMV+ G A+ C+ S I +A+ G+ ++ AI
Sbjct: 274 RMRYAHSLIVGVGLMVLTQFSGVTAVQCFTSSILESADFSTTFGSRAI----------AI 323
Query: 245 IQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWNEVTPVLAYIGI 304
+Q+P + SV+L DKSGRRPLL+ S G LS +I +F +QD N EVTP++ IG+
Sbjct: 324 LQIPVMAVSVVLIDKSGRRPLLMVSAAGMGLSSLLIGFSFLMQDMNQLKEVTPIVVLIGL 383
Query: 305 M 305
+
Sbjct: 384 L 384
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.449 | 0.289 | 0.528 | 1e-65 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.452 | 0.293 | 0.489 | 1.4e-62 | |
| TAIR|locus:2036039 | 464 | AT1G08890 [Arabidopsis thalian | 0.445 | 0.293 | 0.496 | 6.1e-62 | |
| TAIR|locus:2036009 | 462 | AT1G08900 [Arabidopsis thalian | 0.445 | 0.294 | 0.496 | 8.6e-61 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.616 | 0.402 | 0.461 | 4.8e-56 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.445 | 0.274 | 0.453 | 3.1e-55 | |
| TAIR|locus:2096234 | 458 | AT3G05160 [Arabidopsis thalian | 0.616 | 0.410 | 0.456 | 2.3e-54 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.475 | 0.313 | 0.513 | 2e-53 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.449 | 0.286 | 0.549 | 5.4e-53 | |
| TAIR|locus:504955729 | 327 | AT3G05155 [Arabidopsis thalian | 0.468 | 0.437 | 0.5 | 1.1e-51 |
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-65, Sum P(3) = 1.0e-65
Identities = 75/142 (52%), Positives = 99/142 (69%)
Query: 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTA 117
MW+SD CI GWL+IAF+K+ L GR GIG L +YV+P+YIAEITPK+VRG FT
Sbjct: 101 MWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTF 160
Query: 118 ANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX---- 173
+NQLL +GL++IY G ++WR LAL+ A+PC +QV+GLFF+PESPRW
Sbjct: 161 SNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 220
Query: 174 -XYSALRGKTADISMESADIRV 194
LRG+ ADIS E+++I+V
Sbjct: 221 NSLFRLRGRDADISREASEIQV 242
|
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| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 1.4e-62, Sum P(3) = 1.4e-62
Identities = 70/143 (48%), Positives = 97/143 (67%)
Query: 56 SAMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAF 115
+ M S++FCI GWLAI SK A L +GR +G G+ + ++V+P+YIAEITPK +RG F
Sbjct: 100 ATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGF 159
Query: 116 TAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXX--- 172
T +QLL+ G+SV YL+G+ + WR LALI +PC++Q++GLF IPESPRW
Sbjct: 160 TTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEE 219
Query: 173 --XXYSALRGKTADISMESADIR 193
LRG++ADIS ES +I+
Sbjct: 220 FEIALQRLRGESADISYESNEIK 242
|
|
| TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
Identities = 70/141 (49%), Positives = 97/141 (68%)
Query: 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTA 117
MW++D+FCIFGWLA+AF+ D L +GR LG G+ L++YV+P+YIAEITPK RG F+
Sbjct: 97 MWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISYVVPVYIAEITPKAFRGGFSF 156
Query: 118 ANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX---- 173
+NQLL + G+S+++ G WR LAL++A+PC +Q++ LFFIPESPRW
Sbjct: 157 SNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIPESPRWLAMYGRERELE 216
Query: 174 -XYSALRGKTADISMESADIR 193
LRG+ DI E+A+IR
Sbjct: 217 VTLKRLRGENGDILEEAAEIR 237
|
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| TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 8.6e-61, Sum P(3) = 8.6e-61
Identities = 70/141 (49%), Positives = 93/141 (65%)
Query: 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTA 117
MW+SD+ CIFGWLA+AF+ D L GR LG G+ L++YV+P+YIAEITPK RG F+
Sbjct: 95 MWISDVCCIFGWLAVAFAHDIIMLNTGRLFLGFGVGLISYVVPVYIAEITPKTFRGGFSY 154
Query: 118 ANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX---- 173
+NQLL G+S+++ G WR LAL++A+P QV+ LFFIPESPRW
Sbjct: 155 SNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICLFFIPESPRWLAMYGQDQELE 214
Query: 174 -XYSALRGKTADISMESADIR 193
LRG+ +DI E+A+IR
Sbjct: 215 VSLKKLRGENSDILKEAAEIR 235
|
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| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 91/197 (46%), Positives = 127/197 (64%)
Query: 3 GSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGSAMWLSD 62
G S A A++ +++ A+G + V A + L + L +W D
Sbjct: 49 GYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRT----LWACD 104
Query: 63 LFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLL 122
FC+FGWL+IAF+K+ + L LGR SLGIG+ L++YV+P+YIAEITPK+VRGAFTA+NQLL
Sbjct: 105 FFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLL 164
Query: 123 VASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX-----XYSA 177
SG+S+IY GTV++WR +A+I A+PC+LQ +G+FFIPESPRW
Sbjct: 165 QNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLHR 224
Query: 178 LRGKTADISMESADIRV 194
LRGK D+S E+A+I+V
Sbjct: 225 LRGKDTDVSGEAAEIQV 241
|
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| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.1e-55, Sum P(3) = 3.1e-55
Identities = 64/141 (45%), Positives = 86/141 (60%)
Query: 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTA 117
M + FCI GWL +A +++A L GR LGIG+ + +YVIP+YIAEI PK+VRG+F
Sbjct: 128 MLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVF 187
Query: 118 ANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXX----- 172
ANQL+ G+S+ +++G + WR L ++ VPC+ V LFFIPESPRW
Sbjct: 188 ANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECR 247
Query: 173 XXYSALRGKTADISMESADIR 193
LRG DIS E+ IR
Sbjct: 248 SSLQRLRGSDVDISREANTIR 268
|
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| TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 90/197 (45%), Positives = 124/197 (62%)
Query: 3 GSDSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGSAMWLSD 62
G S A A++ +++ A+G + V A + L + L +W D
Sbjct: 40 GYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQLAVILGRRRT----LWACD 95
Query: 63 LFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLL 122
LFCIFGWL+IAF+K+ L LGR SLGIG+ L +YV+P+YIAEITPK+VRGAF+A+ LL
Sbjct: 96 LFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEITPKHVRGAFSASTLLL 155
Query: 123 VASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX-----XYSA 177
SG+S+IY GTV++WR LA+I A+PC + V+G++FIPESPRW
Sbjct: 156 QNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYFIPESPRWLAKIGSVKEVENSLHR 215
Query: 178 LRGKTADISMESADIRV 194
LRGK AD+S E+A+I+V
Sbjct: 216 LRGKDADVSDEAAEIQV 232
|
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| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 78/152 (51%), Positives = 105/152 (69%)
Query: 52 SVFGSAM--WLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPK 109
S FG M W++DLFCI GWLAI+ +KD L +GR +GIG+ L++YV+P+YIAEITPK
Sbjct: 88 SAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPK 147
Query: 110 NVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXX 169
+VRGAFT +NQLL G++V+Y G +SWR LA+I ++PC +QV+GLFFIPESPRW
Sbjct: 148 HVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAK 207
Query: 170 XXXXX-----YSALRGKTADISMESADIRVGV 196
LRG+ DI E+ +I++ V
Sbjct: 208 KGRDKECEEVLQKLRGRKYDIVPEACEIKISV 239
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 78/142 (54%), Positives = 99/142 (69%)
Query: 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTA 117
MW+SDL CI GW +IAF+KD L GR S GIGL L++YV+P+YIAEI+PK+VRG FT
Sbjct: 105 MWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTF 164
Query: 118 ANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXXXX---- 173
NQLL SGL+++Y G ++WR LAL+ A+PC +QV+GLFF+PESPRW
Sbjct: 165 TNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 224
Query: 174 -XYSALRGKTADISMESADIRV 194
LRG ADIS E++DI V
Sbjct: 225 NSLLRLRGGNADISREASDIEV 246
|
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| TAIR|locus:504955729 AT3G05155 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
Identities = 75/150 (50%), Positives = 100/150 (66%)
Query: 54 FGSAM--WLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNV 111
FG M W++++FCI GWLAIA +K+ L LGR +GIG+ L++YV+P+YIAEITPK V
Sbjct: 91 FGCKMTLWITEVFCISGWLAIALAKNIIWLDLGRFFVGIGVGLLSYVVPVYIAEITPKTV 150
Query: 112 RGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFIPESPRWXXXXX 171
RG FT +NQLL G++ Y +G +SWR +ALI +PCL+Q+VGLFF+PESPRW
Sbjct: 151 RGTFTFSNQLLQNCGVATAYYLGNFMSWRIIALIGILPCLIQLVGLFFVPESPRWLAKEG 210
Query: 172 XXX-----YSALRGKTADISMESADIRVGV 196
LRG ADI E+ +I + V
Sbjct: 211 RDEECEVVLQKLRGDEADIVKETQEILISV 240
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_700474 | hypothetical protein (478 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00400011 | hypothetical protein (117 aa) | • | 0.482 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 305 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 8e-19 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-18 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-17 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-04 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 8e-19
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 50/279 (17%)
Query: 56 SAMWLSDLFCIFGWLAIAFSKDA--WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRG 113
++ + ++ + G L F+K + L +GR +G+G+ ++ ++P+YI+EI PK +RG
Sbjct: 77 KSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRG 136
Query: 114 AFTAANQLLVASGLSVIYLVGTVVS-------WRALALIAAVPCLLQVVGLFFIPESPRW 166
A + QL + G+ V ++G ++ WR + VP +L ++GL F+PESPRW
Sbjct: 137 ALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRW 196
Query: 167 LKKSLKLLYS----ALRGKTADISMESADIR----------------------------V 194
L KL + A +D+ E + + +
Sbjct: 197 LVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLM 256
Query: 195 GVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254
GV L + Q L G AI Y+ IF ++ + ++ ++ ++
Sbjct: 257 GVMLQIFQQLTGINAIFYYSPTIFE---------TLGLSDSLLVTIIVGVVNFVFTFIAI 307
Query: 255 LLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTNHWN 293
L D+ GRRPLLL G + ++ +A +
Sbjct: 308 FLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA 346
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Length = 449 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 47/235 (20%)
Query: 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVS---------- 138
GIG+ L + + P+YIAEI P ++RG + NQ + G V+Y V ++
Sbjct: 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190
Query: 139 --WRALALIAAVPCLLQVVGLFFIPESPRWL------KKSLKLLYSALRGKT------AD 184
WR + A+P LL ++ L+F+PE+PR+L +++ +L + G T +
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL-RKIMGNTLATQALQE 249
Query: 185 ISMESADIR---------------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGN 229
I R +GV L V Q VG + YA IF + + +
Sbjct: 250 IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIF---KTLGASTD 306
Query: 230 DSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAF 284
++ + ++ +I L V +++ DK GR+PL + +G + + + AF
Sbjct: 307 IAL----LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 357
|
Length = 479 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 51/264 (19%)
Query: 70 LAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129
AF+ L +GR LGIG+ + + ++P+Y++EI PK +RGA T+ QL + G+ V
Sbjct: 119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178
Query: 130 IYLVGT-------VVSWRALALIAAVPCLLQVVGLFFIPESPRWL---------KKSLKL 173
Y G+ + WR + +P L +GLFF+PESPRWL +KSL
Sbjct: 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238
Query: 174 LYS----------ALRGKTADISMESADIRV------------------GVGLMVMQPLV 205
L L S+E ++ GV L Q
Sbjct: 239 LRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFT 298
Query: 206 GSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPL 265
G AI Y+ IF E + + + + + + AI D+ GRRPL
Sbjct: 299 GINAIMYYSPTIF---ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLV----DRFGRRPL 351
Query: 266 LLASDIGTCLSLSIIALAFCLQDT 289
LL G + L ++ + T
Sbjct: 352 LLIGAAGMAICLFVLGILGASFVT 375
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 33/265 (12%)
Query: 65 CIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVA 124
+ G L AFS + + R +G+G+ + + E PK R Q+ +
Sbjct: 168 AVSGVLT-AFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFS 226
Query: 125 SGLSVIYLVGTVV-SWRALALIAAVPCLLQVVGLFFIPESPRWL------KKSLKLLYSA 177
GL ++ LV + WR L L ++P L + +F+PESPRWL +++LK+L
Sbjct: 227 LGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRI 286
Query: 178 LRGKTADISMESADI---------RVGVGLMV--------MQPLVGSAAIACYA-SYIFA 219
+ + E + + + L A SY
Sbjct: 287 AKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGL 346
Query: 220 AAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279
+L N+ GN ++L + +++LPA + ++LL D+ GRR + AS + +++
Sbjct: 347 VLDLGNLGGNIYLDLFI-----SGLVELPAKLITLLLIDRLGRRYTMAASLLLA--GVAL 399
Query: 280 IALAFCLQDTNHWNEVTPVLAYIGI 304
+ L F D VL GI
Sbjct: 400 LLLLFVPVDLYFLRTALAVLGKFGI 424
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFT 116
+ L L G L +AF+ W L +GR LG+G + IAE P RG
Sbjct: 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRAL 125
Query: 117 AANQLLVASGLSVIYLVGTVV----SWRALALIAAVPCLLQVVGLFFIP 161
G + L+G ++ WR L LI A+ LL + L F+
Sbjct: 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 138 SWRALALIAAVPCLLQVVGLFFIPESPRWL 167
SWR ++ A PC+ + L F+PESPR+
Sbjct: 332 SWRVFVIVCAFPCVFAIGALTFMPESPRFF 361
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This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.93 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.88 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.88 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.87 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.86 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.86 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.86 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.86 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.85 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.84 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.84 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.83 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.83 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.83 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.82 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.82 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.82 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.81 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.81 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.81 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.8 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.79 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.79 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.79 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.78 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.76 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.76 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.76 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.76 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.66 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.65 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.64 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.63 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.63 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.63 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.62 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.62 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.58 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.57 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.57 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.57 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.53 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.48 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.44 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.39 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.39 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.37 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.35 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.34 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.29 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.29 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.26 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.22 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.21 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.2 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.13 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.13 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.08 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.98 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.98 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.96 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.96 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.92 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.78 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.76 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.76 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.75 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.74 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.72 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.7 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.68 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.66 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.65 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.64 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.62 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.61 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.53 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.47 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.46 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.45 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.42 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.35 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.33 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.33 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.32 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.31 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.28 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.26 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.26 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.25 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.22 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.22 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.21 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.19 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.18 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.16 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.16 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.13 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.13 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.13 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.11 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.11 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.1 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.1 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.09 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.02 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 97.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.86 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 97.86 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.84 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.83 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.8 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.78 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.77 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.71 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.68 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.67 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.65 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.65 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.61 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.59 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.59 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 97.55 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.54 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 97.52 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.52 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 97.51 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.5 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.49 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.47 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.46 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 97.44 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.44 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.44 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 97.43 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.38 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.35 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.31 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.3 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.27 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.27 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.25 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.25 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.24 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.24 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.19 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.16 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 97.1 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.09 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.07 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.04 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.04 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.0 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.9 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.85 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.82 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 96.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.69 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.62 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.48 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.43 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.34 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.25 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.25 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.16 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 95.87 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.72 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 95.69 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 95.58 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.57 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.44 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.31 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.27 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 95.21 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.21 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 94.61 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 94.49 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 93.67 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 92.73 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.69 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.26 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.14 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 91.06 | |
| PRK11462 | 460 | putative transporter; Provisional | 90.42 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 89.02 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.98 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.66 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 86.15 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 84.51 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 84.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 83.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 82.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 82.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 81.85 | |
| PRK15015 | 701 | carbon starvation protein A; Provisional | 81.22 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 80.96 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 80.29 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=202.42 Aligned_cols=284 Identities=29% Similarity=0.430 Sum_probs=227.3
Q ss_pred CCchHHHHHHHHHHHhhhhhhhcccccccchhhhhhh--------hhc--CCchhHHHHHH-------------------
Q 035493 6 SSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITA--------DLG--LSLIEYSVFGS------------------- 56 (305)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~s~~~~~~~~s------------------- 56 (305)
++.+++.........++.+..||+.+.+++..+.+++ .+| .++++..++-|
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~ 82 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGL 82 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888889999999999998765543 344 45555443333
Q ss_pred ---------HHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHH
Q 035493 57 ---------AMWLSDLFCIFGWLAIAF---SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVA 124 (305)
Q Consensus 57 ---------~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 124 (305)
.+..+.++..++.+...+ .++++.++++|++.|+..|......+.|+.|..|++.||....+.+.+..
T Consensus 83 la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~ 162 (485)
T KOG0569|consen 83 LADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV 162 (485)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH
Confidence 566666666666665554 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh------hhhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH------HHHHHHHHhhCCCcchhhh---H
Q 035493 125 SGLSVIYLVG------TVVSWRALALIAAVPCLLQVVGLFFIPESPRWLKK------SLKLLYSALRGKTADISME---S 189 (305)
Q Consensus 125 ~G~~~~~~i~------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~------~~~~~~~~~~~~~~~~~~~---~ 189 (305)
+|..++..++ ..-.|++.+....+++++..+...++||||||+.. |+++.++.+++++++..+. .
T Consensus 163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~ 242 (485)
T KOG0569|consen 163 IGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEML 242 (485)
T ss_pred HHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 9999997777 22269999999999999999999999999999865 5566666666654211100 0
Q ss_pred HH--------------------------HHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHH
Q 035493 190 AD--------------------------IRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTA 243 (305)
Q Consensus 190 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (305)
++ ....+.+...+++.+.+.+.+|...++++.|++. +++.......+
T Consensus 243 ~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-------~~a~~an~~~g 315 (485)
T KOG0569|consen 243 REIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-------EEAQYANLGIG 315 (485)
T ss_pred HHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH-------HHHHHHHHHHH
Confidence 00 0066778888899999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHHhhccCc-cccccc
Q 035493 244 IIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCLQDTN-HWNEVT 296 (305)
Q Consensus 244 ~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 296 (305)
..+.+.++++.+++||.|||++++.+..++.+..+.+.......+.. .|..|.
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~ 369 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL 369 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999888888766655544 444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=197.33 Aligned_cols=257 Identities=21% Similarity=0.164 Sum_probs=201.6
Q ss_pred CchHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHH
Q 035493 7 SAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSD 62 (305)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~ 62 (305)
..+++.+...+...++.|..+.+......++|++.+|+|+|..+.|+..| +++..+
T Consensus 6 ~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l 85 (394)
T COG2814 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85 (394)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 33455566667778888999999999999999999999999999998888 889999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhh
Q 035493 63 LFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVS 138 (305)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~ 138 (305)
.++.++++++++++||+.++++|++.|+..|..++.......|..|+++|++++++...+..++..+|..++ +.+|
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999888877766665554 6679
Q ss_pred hHHHHHHhHHHHHHHHHH-hhccc--CChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHH
Q 035493 139 WRALALIAAVPCLLQVVG-LFFIP--ESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYAS 215 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~~-~~~~~--es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (305)
||..|+..+..+++..+. +..+| |.++....+.++..+..+++.. +......+..+.+.+....|..
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v----------~~~l~~t~l~~~g~F~~ftYi~ 235 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGV----------LLGLLATFLFMTGHFALYTYIR 235 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchH----------HHHHHHHHHHHcchhhhHHhHH
Confidence 999999999998888754 46688 2111000011122222222211 3444444455556666666666
Q ss_pred HHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 216 YIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 216 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.++++ .|++. +...+....++++.++|+.++|++.|| +.|+.+.....+..+..+.+.
T Consensus 236 P~L~~v~g~s~-------~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~ 294 (394)
T COG2814 236 PFLESVAGFSV-------SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT 294 (394)
T ss_pred HHHHHccCCCH-------hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence 66666 69999 899999999999999999999999999 888887777666666555543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=206.45 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=144.1
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHH
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDL 63 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~ 63 (305)
..+.+|.+.+++.++.+..+++...++.++|.+.++++++..+.+++.+ .++++.+
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3567788888888899999999999999999999999999999887766 7778888
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh-------
Q 035493 64 FCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV------- 136 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~------- 136 (305)
+.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++..++...++.+|.++++.++..
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999888865411
Q ss_pred ----------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH
Q 035493 137 ----------VSWRALALIAAVPCLLQVVGLFFIPESPRWLKK 169 (305)
Q Consensus 137 ----------~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~ 169 (305)
.+||+.+++.++++++.++..+++||||+|+..
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~ 363 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLE 363 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 269999999998888887778889999999765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=196.33 Aligned_cols=266 Identities=25% Similarity=0.421 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhh--------cCCchhHHHHHH------------------------H
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADL--------GLSLIEYSVFGS------------------------A 57 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s------------------------~ 57 (305)
+.+......+.++.+.+++|....++..|.+++++ +.++++.+++.+ +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566667777889999999999999999998887 888888887766 7
Q ss_pred HHHHHHHHHHHHHHHHhh------------cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH
Q 035493 58 MWLSDLFCIFGWLAIAFS------------KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS 125 (305)
Q Consensus 58 l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 125 (305)
++.+..++.++.+.++++ ++++.++++|+++|++.|...+...++++|++|+|+|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 778888888888777763 22567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh------------hhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCCCcc----
Q 035493 126 GLSVIYLVGT------------VVSWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGKTAD---- 184 (305)
Q Consensus 126 G~~~~~~i~~------------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~~~~---- 184 (305)
|..+++.++. ..+||+.|++.+++.++..+..+++||+|+++.+ ++++..++..+.+..
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQAL 247 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHH
Confidence 9988876542 3489999999888877776667789999987543 111111221111100
Q ss_pred --hhhhHH--H---HH----------HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHH
Q 035493 185 --ISMESA--D---IR----------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQL 247 (305)
Q Consensus 185 --~~~~~~--~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (305)
..+..+ + .+ .......+.+..+.+...+|.|.+.++.|.+. ..........++..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-------~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 248 QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-------DIALLQTIIVGVINL 320 (479)
T ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-------chHHHHHHHHHHHHH
Confidence 000000 0 00 11112233334445566778888888888877 666677778888999
Q ss_pred HHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 248 PAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 248 ~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
++.++.++++||+|||+.+..+..+..++.+.++.
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~ 355 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988888777766654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=196.07 Aligned_cols=250 Identities=14% Similarity=0.074 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
|.++.....+.++.+.+.+|....+...|.+++|+|++.++.+++.+ ++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 34556667777788889999999999999999999999999998877 788899999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh---------
Q 035493 66 IFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV--------- 136 (305)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~--------- 136 (305)
.+++.++++++|++.+++.|+++|++.+...+....++.|++|+|+|++++++++.+..+|..+++.++..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998887632
Q ss_pred -hhhHHHHHHhHHHHHHHHH-HhhcccCChHH---HHHHHHHHH-HHhhCCC-----c--c--h-----hhhHHH----H
Q 035493 137 -VSWRALALIAAVPCLLQVV-GLFFIPESPRW---LKKSLKLLY-SALRGKT-----A--D--I-----SMESAD----I 192 (305)
Q Consensus 137 -~~wr~~~~~~~~~~~~~~~-~~~~~~es~~~---~~~~~~~~~-~~~~~~~-----~--~--~-----~~~~~~----~ 192 (305)
.|||+.|++.+++.++..+ ..+++||+|+. +.+++++.. ++.+++. . + . ....++ .
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPA 243 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChH
Confidence 4899999998888766554 44678998842 212111111 1111000 0 0 0 001111 1
Q ss_pred HHHHHHHHHhhhhchhHHHHhHHHHHHHh--cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhh
Q 035493 193 RVGVGLMVMQPLVGSAAIACYASYIFAAA--ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLL 266 (305)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~ 266 (305)
.+......++.....+.+.+|.|.++++. +++. .+++.......++..++.++.++++||++||+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-------~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSN-------IMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------HHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 13344445555556777888999999884 5666 6778888999999999999999999999987753
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-25 Score=194.00 Aligned_cols=252 Identities=16% Similarity=0.106 Sum_probs=181.9
Q ss_pred HHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchh-HHHH-----HH------------------------HHHHHHH
Q 035493 14 LSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIE-YSVF-----GS------------------------AMWLSDL 63 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~-----~s------------------------~l~~~~~ 63 (305)
.......++.+.+++|...++...|.+.++++.+.++ .+++ .+ ++..+++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3556677889999999999999999999998644322 1111 11 8899999
Q ss_pred HHHHHHHHHHhhcchhH--------HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh-
Q 035493 64 FCIFGWLAIAFSKDAWS--------LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG- 134 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~--------l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~- 134 (305)
+++++++++++++|++. +++.|+++|++.|+.++....+++|++|+|+||++.++...+..+|..+++.+.
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 889999999999999999999999999999999999999988888877776443
Q ss_pred ---h--------hhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHH--H-HhhC-CCcchhhhHHH-HH--HHH
Q 035493 135 ---T--------VVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLY--S-ALRG-KTADISMESAD-IR--VGV 196 (305)
Q Consensus 135 ---~--------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~-~~--~~~ 196 (305)
. .+|||+.|++.++++++..+....+||+|++..++.+... + ..++ ++.+..+..++ .+ ...
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTC 255 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHH
Confidence 1 3589999999887766666666779999987543111100 0 0000 01011111111 11 111
Q ss_pred HHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 197 GLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
....+.....++....|.|.++++ .|++. .+.........++..++.++.++++||+|||+.+..+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 325 (490)
T PRK10642 256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSE-------DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA 325 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 122222334466777788998865 58877 6666777777888999999999999999999988776554
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=194.46 Aligned_cols=272 Identities=28% Similarity=0.494 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHhhhhhhhcc--cccccchhhhhhhhh-----cCCc--hhHHHHHH------------------------
Q 035493 10 PAVILSTLVAICGSVAYGCS--VGYSSPVEAGITADL-----GLSL--IEYSVFGS------------------------ 56 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~~~~~s------------------------ 56 (305)
+..........++.+..+++ .+..++..+.++++. ..+. ++.+++.+
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45566777778888888887 667777777776642 2222 23356655
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.++.+.+++.+|.+++++++|+.+++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++..
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999777755
Q ss_pred h-----hhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCC-CcchhhhH----------------
Q 035493 137 V-----SWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGK-TADISMES---------------- 189 (305)
Q Consensus 137 ~-----~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~-~~~~~~~~---------------- 189 (305)
. +||..+.+..+++++..+..+++||+|+|+.+ ++++.++++++. +.+...+.
T Consensus 201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
T KOG0254|consen 201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG 280 (513)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence 5 79999999999999988888889999999977 455666666551 11111110
Q ss_pred -------------HHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 035493 190 -------------ADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLL 256 (305)
Q Consensus 190 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (305)
+.......+..++++.+.+...+|.+.+++..|.+. .. .......++.+.++..++.++
T Consensus 281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-------~~-~~~~~~~~~v~~~~t~~~~~l 352 (513)
T KOG0254|consen 281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-------DT-FLASIILGVVNFLGTLVATYL 352 (513)
T ss_pred cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-------ch-HHHHHHHHHHHHHHHHHHHHH
Confidence 001157888889999999999999999999988876 33 567788889999999999999
Q ss_pred hcccCCchhhhhHhHHHHHHHHHHHHHHhhccC
Q 035493 257 TDKSGRRPLLLASDIGTCLSLSIIALAFCLQDT 289 (305)
Q Consensus 257 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (305)
.||+|||+.++.+...+.++.++++........
T Consensus 353 vd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~ 385 (513)
T KOG0254|consen 353 VDRFGRRKLLLFGAAGMSICLVILAVVGVFALY 385 (513)
T ss_pred HHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999887666544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=193.51 Aligned_cols=278 Identities=18% Similarity=0.136 Sum_probs=194.3
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhh-----cCCchhHHHHHH-----------------------
Q 035493 5 DSSAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADL-----GLSLIEYSVFGS----------------------- 56 (305)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s----------------------- 56 (305)
+.+..+.++....++.++.+.+++|....+.+.|.+.+++ +.++.+.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr 86 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK 86 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 3566788888888999999999999999999999887753 334445555544
Q ss_pred -HHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH
Q 035493 57 -AMWLSDLFCIFGWLAIAFSKD------AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129 (305)
Q Consensus 57 -~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 129 (305)
++..+.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+|+|++++++.+....+|..+
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888766 7889999999999999999999999999999999999999999999998888
Q ss_pred HHHhhh---------------------------hhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHH------HHHHHH
Q 035493 130 IYLVGT---------------------------VVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKS------LKLLYS 176 (305)
Q Consensus 130 ~~~i~~---------------------------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~------~~~~~~ 176 (305)
++.+.. ..+||+.+.+.++++++..+..+++||||+|+.++ +++..+
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~ 246 (502)
T TIGR00887 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMS 246 (502)
T ss_pred HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHH
Confidence 776642 12699999999888888777778899999997651 112222
Q ss_pred HhhCC-----Ccc----------hhhhHHH-------HH-----HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccC
Q 035493 177 ALRGK-----TAD----------ISMESAD-------IR-----VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGN 229 (305)
Q Consensus 177 ~~~~~-----~~~----------~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (305)
+..+. .++ .+...++ .+ .......+......++...|.|.++++.|++.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~ 326 (502)
T TIGR00887 247 AVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAAT 326 (502)
T ss_pred HHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccc
Confidence 21110 000 0001111 01 111112222222345566678888888888652100
Q ss_pred Cc--c---hhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 230 DS--M---NLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 230 ~~--~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.. . ...........++.+++.++.++++||+|||+.+..+..+..+++..++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 00 0 00111233445567788899999999999999988887777666655554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=185.86 Aligned_cols=251 Identities=15% Similarity=0.062 Sum_probs=183.7
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhc---CCchhHHHHHH---------------------------H
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLG---LSLIEYSVFGS---------------------------A 57 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s---------------------------~ 57 (305)
.+++++.......++.+.+.+|...++...|.+.+|++ .+..+.+...+ +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34566666667778889999999999999999999984 44544322222 7
Q ss_pred HHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH
Q 035493 58 MWLSDLFCIFGWLAIAFSKDAW--------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129 (305)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 129 (305)
+..+..+++++++++++++++. .+++.|+++|++.|+.++...++++|++|+|+|+++.++...+...|..+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 8899999999999999998874 58899999999999999999999999999999999999988888888777
Q ss_pred HHHhh------------hhhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHH
Q 035493 130 IYLVG------------TVVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGV 196 (305)
Q Consensus 130 ~~~i~------------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 196 (305)
++.+. ...|||+.|++.++++++........||+|++..++. ++ ..+..+..++.+ +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~-------~~-~~~~~~l~~~~~~~~~ 247 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL-------KE-AGSLKGLWRNRRAFIM 247 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh-------cc-cccHHHHHhhHHHHHH
Confidence 76543 1459999999988888776666667899876421110 00 111111122211 222
Q ss_pred H-HHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 197 G-LMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
. ...+......+.+..|.|.++++ .|++. .+.+.......+...++..+.|+++||++||+....+..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~-------~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 248 VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHA-------NVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 1 22222233456677888988866 58887 77777777777788888889999999999999876654443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=186.41 Aligned_cols=261 Identities=17% Similarity=0.091 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
+.++.....+.++.+.++++.....+..|.+++++|+|+.+.+++.+ ++..+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 44455566777888889999999999999999999999999887766 888899999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHH
Q 035493 66 IFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRA 141 (305)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~ 141 (305)
.++....+++++++.++++|+++|++.+..++....++.|++|+|+|+++.++...+..+|..+++.+. ...+||+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888766 3459999
Q ss_pred HHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCc----chhhhHHHHH----HHHHHHHHhhhhchhHHHHh
Q 035493 142 LALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTA----DISMESADIR----VGVGLMVMQPLVGSAAIACY 213 (305)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 213 (305)
.|++.....++........||++++..++.++..++.+.... +..+..++.. .......+........+..+
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGL 253 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998866554444333344677765432211100000000000 0001111111 11111122222223345667
Q ss_pred HHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHH
Q 035493 214 ASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSL 277 (305)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~ 277 (305)
.|.++++.|.++ .+.+.......++.++++++.+++.||++||+....+.....+..
T Consensus 254 ~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 254 LPTYLAGEGFDT-------GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888888888887 777888888899999999999999999999998887766654443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=185.13 Aligned_cols=262 Identities=16% Similarity=0.103 Sum_probs=198.0
Q ss_pred CchHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHH
Q 035493 7 SAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSD 62 (305)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~ 62 (305)
+..++++.....+.+..+.++++....++..|.+.+++|.++++.+++.+ ++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 34457787888888889999999999999999999999999999987766 777778
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhh
Q 035493 63 LFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVS 138 (305)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~ 138 (305)
.+..++.+++.+++|++.+++.|++.|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++.++ ...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 888888888999999999999999999999999999999999999999999999999999999999988877 3448
Q ss_pred hHHHHHHhHHHHHHHHH-HhhcccCChHHHHHHHH-HHHHHhhCCCcchhhhHH-HHHHHHHHHHHhhhhchhHHHHhHH
Q 035493 139 WRALALIAAVPCLLQVV-GLFFIPESPRWLKKSLK-LLYSALRGKTADISMESA-DIRVGVGLMVMQPLVGSAAIACYAS 215 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (305)
||+.|++.++..++..+ ...++||+|++..++.+ +..++.. .+..++.+ ..........+......+....|.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 244 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVL---RALFGEGRATATLLLWISYFFTLIVLYFLLNWLP 244 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987766555543 44568998765322100 0000000 00000000 0012222333333334556677889
Q ss_pred HHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 216 YIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
.++++.|+++ .+.+.......++.++++++.+++.||++||+.+..+.....++..
T Consensus 245 ~~~~~~g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 245 SLLVGQGLSR-------SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA 300 (406)
T ss_pred HHHHhCCCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9998889888 7888888999999999999999999999999988776555544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=185.15 Aligned_cols=259 Identities=21% Similarity=0.173 Sum_probs=193.2
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHH
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDL 63 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~ 63 (305)
.+++++.....+.++.+.++++....++..|.+++++|+++++.+++.+ ++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4567777778888899999999999999999999999999999998777 7778888
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hh-
Q 035493 64 FCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VS- 138 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~- 138 (305)
+..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++.. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998887643 24
Q ss_pred -hHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHH-H----HHHHhhCCCcchhhhH-------H----HHH---HHHHH
Q 035493 139 -WRALALIAAVPCLLQVVGLFFIPESPRWLKKSLK-L----LYSALRGKTADISMES-------A----DIR---VGVGL 198 (305)
Q Consensus 139 -wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~-~----~~~~~~~~~~~~~~~~-------~----~~~---~~~~~ 198 (305)
||+.|++.++..++..+.....||++++..++.+ + ..++..++++..+.+. + +.+ .....
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVV 245 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence 9999998777766666666778998765433111 1 1111111110000000 0 000 01111
Q ss_pred HHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 199 MVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
..............+.|.++++ .|++. .+.+.......++.++++++.+++.||++||+.+..+....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 246 LVLFANLYSHPIQDLLPTYLKADLGLSP-------HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 1111111223344556766655 68888 88888888999999999999999999999999887766544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=186.18 Aligned_cols=253 Identities=15% Similarity=0.088 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHH
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLF 64 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~ 64 (305)
++.++.+...+.++.....+.+-..+...|.+.++.++|.+|+|.+.+ .+..++++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 345677788888899999999999999999999999999999999888 78899999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh--hhh----h
Q 035493 65 CIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG--TVV----S 138 (305)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~--~~~----~ 138 (305)
.++.+++.+++++.+.+.+..+++|..+|...|.+...+.+|+|++|||+..++++.+-++|..+.|.+. ..+ +
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998888776 332 8
Q ss_pred hHHHHHHhHHHHHHHHH-HhhcccCChHHHHH----H----HHHHHHHhhCCC-cchhhhHH-----H-HHHHHHHHHHh
Q 035493 139 WRALALIAAVPCLLQVV-GLFFIPESPRWLKK----S----LKLLYSALRGKT-ADISMESA-----D-IRVGVGLMVMQ 202 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~----~----~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~~ 202 (305)
||..|++.++++++..+ .++..+|+|+...- | ..+..++.++.+ ....+... + ..+.+.+....
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vf 263 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVF 263 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence 99999999999877764 45678888863211 1 111101111111 01111110 0 01455555555
Q ss_pred hhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCchhhhh
Q 035493 203 PLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS--GRRPLLLA 268 (305)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~r~~~~~ 268 (305)
....-+++..|.|.|+.| .|++. .++....+.+-.++++|+++.|+++||. |||....+
T Consensus 264 vYivR~gi~dW~p~YL~e~k~~s~-------~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 264 VYVVRYGINDWGPLYLSEVKGFSL-------VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred HHHHHHHHhhhHHHHHHHhcCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 555678999999999988 59999 8999999999999999999999999996 56665544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=184.51 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhhhhhhhcccccccchhhh-hhhhh--cCCchhHHHHHH-----------------------------HH
Q 035493 11 AVILSTLVAICGSVAYGCSVGYSSPVEAG-ITADL--GLSLIEYSVFGS-----------------------------AM 58 (305)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~s-----------------------------~l 58 (305)
+++.......++.+.+++|....+...|. +.+++ +.++.+ +++.+ ++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 34456677778889999999998888774 55555 666653 43321 88
Q ss_pred HHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH
Q 035493 59 WLSDLFCIFGWLAIAFSKDAW--------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI 130 (305)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 130 (305)
..+..+++++++++++++|++ .+++.|+++|++.|+.++....++.|++|+|+|++..+....+..+|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999987 588899999999999999999999999999999999999999999998887
Q ss_pred HHhhh------------hhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhH-HHHH--HH
Q 035493 131 YLVGT------------VVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMES-ADIR--VG 195 (305)
Q Consensus 131 ~~i~~------------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 195 (305)
..+.. .+|||+.|++.+++.++........||+|++..++.++ ++.+++. +..+.. ++.+ ..
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~~~~~ 254 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ--AAAKKRI-PVIEALLRHPGAFLK 254 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc--ccccccC-CHHHHHHHchHHHHH
Confidence 65431 35999999998887766555556689998764332111 0000010 111111 1111 11
Q ss_pred HHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 196 VGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
.....+......+....|.|.+.++ .|+++ ..........++...++.++.|+++||+|||+....+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~-------~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~ 327 (438)
T PRK09952 255 IIALRLCELLTMYIVTAFALNYSTQNLGLPR-------ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGT 327 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 1222233333455666777887765 57776 544445556677778888999999999999998877655444
Q ss_pred H
Q 035493 275 L 275 (305)
Q Consensus 275 ~ 275 (305)
+
T Consensus 328 ~ 328 (438)
T PRK09952 328 L 328 (438)
T ss_pred H
Confidence 3
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=185.07 Aligned_cols=246 Identities=19% Similarity=0.172 Sum_probs=177.7
Q ss_pred HHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHH-H-----------------------------HHHHHH
Q 035493 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFG-S-----------------------------AMWLSD 62 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s-----------------------------~l~~~~ 62 (305)
+.......++.+.+.+|....++..|.+++|++.++++.+... + .++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 3356777889999999999999999999999998876643221 1 788888
Q ss_pred HHHHHHHHHHHhhcchh--------HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 63 LFCIFGWLAIAFSKDAW--------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 63 ~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+..+++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++......+|..+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 4688999999999999999999999999999999999998877776666555544
Q ss_pred ------------hhhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhh-HHHHH--HHHHHH
Q 035493 135 ------------TVVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISME-SADIR--VGVGLM 199 (305)
Q Consensus 135 ------------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~ 199 (305)
..+|||+.|++..+...+........||++++..++.+ .+..+..++ .++.+ ......
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 246 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------PSMREIFRSLAANWRIVLAGMLM 246 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------cccccHHHHHHHhHHHHHHHHHH
Confidence 24599999998655443333333446666543211110 000111111 11111 111222
Q ss_pred HHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 200 VMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
.+......+....|.|.++++ .|++. .+.+.......++.+++.++.|+++||+|||+....+...
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 313 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSA-------ADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVL 313 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 223344466778889999987 59988 7777888888899999999999999999999987765443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=182.36 Aligned_cols=267 Identities=28% Similarity=0.509 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCC--------chhHHHHHH------------------------
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLS--------LIEYSVFGS------------------------ 56 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s------------------------ 56 (305)
.++.+....++.++.+..+++....++..|.+.++++.+ ..+.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~ 102 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK 102 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Confidence 355566666677778889999999999999999888877 788887766
Q ss_pred HHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHh
Q 035493 57 AMWLSDLFCIFGWLAIAFSK---DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLV 133 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 133 (305)
++..+..+..++..++.+.+ +++.+++.|+++|++.+...+....++.|++|+++|+++.++.+.+..+|..+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 182 (481)
T TIGR00879 103 SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGF 182 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 77788888888888885543 455899999999999999999999999999999999999999999999999999998
Q ss_pred h-------hhhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCCCcchhh--------------
Q 035493 134 G-------TVVSWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGKTADISM-------------- 187 (305)
Q Consensus 134 ~-------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~~~~~~~-------------- 187 (305)
+ ...+||+.|++.++..++..+..+++||+|++..+ ++++..++.++.+.+...
T Consensus 183 ~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
T TIGR00879 183 GSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262 (481)
T ss_pred HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 8 34489999999777777666667788999876433 111111111111000000
Q ss_pred ----------hH--------HHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHH
Q 035493 188 ----------ES--------ADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPA 249 (305)
Q Consensus 188 ----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (305)
+. ....+......+..........++.|.+.++.|++. .+.+.......++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~ 335 (481)
T TIGR00879 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-------DHAFLVSIIVGAVNFAF 335 (481)
T ss_pred HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHHHHH
Confidence 00 000122233333333445566778888888888888 78888888999999999
Q ss_pred HHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 250 IVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 250 ~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.++.+++.||++||+.+..+..+..++.+.++.
T Consensus 336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777766666653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=179.48 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=171.7
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.....+.++.+....+.....+..|.+++|+|.|+++.++..+ ++..+..+..+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 343344444444444444445667789999999999999998766 88889999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHH
Q 035493 68 GWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALA 143 (305)
Q Consensus 68 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~ 143 (305)
+++.+++++|++.+++.|+++|++.+...+...+++.|++|+|+|++++++...+.++|..++|.++ +..|||+.|
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 9999999999999999999999999988999999999999999999999999999999999888877 445999999
Q ss_pred HHhHHHHHHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-h
Q 035493 144 LIAAVPCLLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-A 221 (305)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 221 (305)
++.++..++..+. ....||.|+..+++ .+..++..+++ +. +......+...........+.+.++++ .
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLLPSEHSGS-LKSLPLLFRRP--------AL-VSLYLLTVVVVTAHFTAYSYIEPFVQQVA 236 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcch-HHHHHHHHhCc--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988877666543 34467654311101 11111111110 00 111122222222233334555666665 5
Q ss_pred cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 035493 222 ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLL 267 (305)
Q Consensus 222 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~ 267 (305)
|.+. .+.+.......++.++++++.+++.||.+||+...
T Consensus 237 g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~ 275 (390)
T PRK03545 237 GLSE-------NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI 275 (390)
T ss_pred CCCc-------cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 8888 78888888899999999999999999999876543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=185.86 Aligned_cols=263 Identities=16% Similarity=0.063 Sum_probs=195.6
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.....+.++.+...+|.+.++..+|.+.+|+|.+.++.+|+.+ ++..+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999999999998876 88899999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhcc-CCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHH
Q 035493 68 GWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEIT-PKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRAL 142 (305)
Q Consensus 68 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~ 142 (305)
+++.+++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.++......+|..++|.++.. .+||+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999998888888787765 67899999999999999999998888744 499999
Q ss_pred HHHhHHHHHHHHH-HhhcccCChHHHHH--HHHH-------------HHHH-----------------------------
Q 035493 143 ALIAAVPCLLQVV-GLFFIPESPRWLKK--SLKL-------------LYSA----------------------------- 177 (305)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~~~es~~~~~~--~~~~-------------~~~~----------------------------- 177 (305)
|++.....++..+ ..+.+||+|+...+ +... ..++
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e 243 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQ 243 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9998777666553 34556765431100 0000 0000
Q ss_pred hhCCCcchh-hhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 035493 178 LRGKTADIS-MESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254 (305)
Q Consensus 178 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (305)
.+.+++-.+ +..++.. .......+..........++.|.++++ .|+++ .+++.......++..++.++.|
T Consensus 244 ~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~-------~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 244 LAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSP-------LEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0011111 222223333333355666778888887 59999 8999999999999999999999
Q ss_pred HhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 255 LLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 255 ~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
++.||+|+|+....+..+..++...+.
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999988877777666655544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=174.04 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=172.7
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHH
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDL 63 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~ 63 (305)
.+|+.|.....+.++.+..........+.+|.+.+|+|+++++.++..+ .+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~ 93 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV 93 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 3455666555555555555555555667789999999999999987665 7788889
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhh
Q 035493 64 FCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSW 139 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~w 139 (305)
+.+++.+++.+++|++.+++.|+++|++.+...+...+++.|++|+|+|+++.++...+.++|..++|.++. .++|
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 999999999999999999999999999999999999999999999999999999999988888888887774 4599
Q ss_pred HHHHHHhHHHHHHHHHHh-hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhH-HH
Q 035493 140 RALALIAAVPCLLQVVGL-FFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYA-SY 216 (305)
Q Consensus 140 r~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~ 216 (305)
|+.|++.++.+++..+.. ...||+|+...++.++.. +..++.. +......+...........+. |.
T Consensus 174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 242 (394)
T PRK10213 174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTF-----------RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPV 242 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCcccccchhHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877766554433 446776532111001000 1111111 222222233333333444444 66
Q ss_pred HHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 035493 217 IFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRR 263 (305)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r 263 (305)
+.++.|+++ .+.+......+++.+++.++.+++.||.+++
T Consensus 243 ~~~~~g~s~-------~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~ 282 (394)
T PRK10213 243 YMNLAGFGV-------DGLTLVLLSFGIASFVGTSLSSFILKRSVKL 282 (394)
T ss_pred HHHhcCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 777779888 7888888889999999999999999995443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=175.75 Aligned_cols=248 Identities=8% Similarity=-0.015 Sum_probs=183.6
Q ss_pred HHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH
Q 035493 14 LSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW 69 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~ 69 (305)
.....+.++.+..+.+....++..|++++++|+|.++.+++.+ ++..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444556677788888888999999999999999999987766 7778888889999
Q ss_pred HHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh-----hhhhHHHHH
Q 035493 70 LAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT-----VVSWRALAL 144 (305)
Q Consensus 70 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~-----~~~wr~~~~ 144 (305)
.+.+++++++.+++.|+++|++.+...+....++.|++|+|+|++..+..+....+|..++|.+.. ..+||+.|.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888888777776652 358999999
Q ss_pred HhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hcc
Q 035493 145 IAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AEL 223 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 223 (305)
+.++..++..+..++ ++.|+..+ +++ + +++++.++..++..+......+......+.+..|.|.++++ .|+
T Consensus 167 ~~~~~~~~~~~~~~~-~~~p~~~~-~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~ 238 (394)
T PRK03699 167 CIGLVYVAIFILTLF-SEFPALGK-HAP---K---ADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGM 238 (394)
T ss_pred HHHHHHHHHHHHHHh-cCCccccc-cCc---c---ccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 887776665543332 22222100 000 0 00000011111111333444444444566778899999966 589
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHH
Q 035493 224 MNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLS 276 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~ 276 (305)
+. .+.+.......++..+++++.+++.||++||+.+.....+..+.
T Consensus 239 s~-------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 239 SL-------EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL 284 (394)
T ss_pred Ch-------HHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 88 88888888889999999999999999999999887665554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=175.50 Aligned_cols=246 Identities=17% Similarity=0.119 Sum_probs=180.8
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA 73 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~ 73 (305)
...+..+..+.......+.+|.+++|+|++.++.++..+ ++..+..+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777888999999999999999987777 88889999999999999
Q ss_pred hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHH
Q 035493 74 FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVP 149 (305)
Q Consensus 74 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~ 149 (305)
+++|++.+++.|+++|++.+...+.....+.|++|+++|+++++....+..+|..+++.++ ...+||+.|++.++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999999999988888888887766 344899999998887
Q ss_pred HHHHHH-HhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccc
Q 035493 150 CLLQVV-GLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQ 227 (305)
Q Consensus 150 ~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 227 (305)
.++..+ ....+||.++....+.++..+..+++ ..+......+....+......|.+.++++ .|.++
T Consensus 167 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-- 234 (382)
T PRK10091 167 NIAVLASIYFWVPDIRDEAKGGLREQFHFLRSP----------APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSE-- 234 (382)
T ss_pred HHHHHHHHHHhCCCCCcccccCHHHHHHHhcCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--
Confidence 666554 34557876431110111111111100 00222222222222233334455555554 68888
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 228 GNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
.+.+......+++.++++++.+++.||+++|+....+..+..++.+.+
T Consensus 235 -----~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 235 -----TSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 888898999999999999999999999999998887776666555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=175.48 Aligned_cols=232 Identities=12% Similarity=0.089 Sum_probs=172.3
Q ss_pred ccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 035493 31 GYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRC 86 (305)
Q Consensus 31 ~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 86 (305)
...++..|.+++|+|+|.++.+++.+ ++..+..+++++.+.+++++|++.+++.|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 56789999999999999999998887 999999999999999999999999999999
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhh-hhHHHHHHhHHHHHHHHHHhhcc-
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVV-SWRALALIAAVPCLLQVVGLFFI- 160 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~-~wr~~~~~~~~~~~~~~~~~~~~- 160 (305)
++|++.+...+....++.|++| ++|+++++.+..+...|..+++.++ +.. +||+.+...++..++.....+..
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 7799999999887777776666655 333 89998877666554443333222
Q ss_pred cCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHH
Q 035493 161 PESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDL 240 (305)
Q Consensus 161 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (305)
++.|+ ++++. +.+..+..+ ++..+......+.....+.....|.|.++++.|.+. .+++....
T Consensus 185 ~~~~~----~~~~~----~~~~~~~l~--~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~-------~~ag~~~~ 247 (393)
T PRK09705 185 AREVA----SSHKT----TTTPVRVVF--TPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASA-------QYSGSLLA 247 (393)
T ss_pred cCCCc----cccCC----CcCCccccc--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-------hhhhHHHH
Confidence 22222 00000 000000000 011123333333334456677788899998888888 88889999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 241 LTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 241 ~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
..+++.++++++.+++.||.+||+....+..+..++...+
T Consensus 248 ~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 248 LMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766665555443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=181.99 Aligned_cols=254 Identities=14% Similarity=-0.021 Sum_probs=179.5
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
.+.......++.+....++...++..|.+.+|+|++.++.|++.+ ++..+.++.++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 344556666777777889999999999999999999999998877 55455555544
Q ss_pred HHHH-----HHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----h-
Q 035493 68 GWLA-----IAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----V- 137 (305)
Q Consensus 68 ~~~~-----~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~- 137 (305)
+... +++++|++.+++.|+++|++.+...|....+++|++|+++||+++++...+.++|.++++.+... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 4444 34468999999999999999999999999999999999999999999999999999998877631 1
Q ss_pred --hhHHHHHHhHHHHHHHHHH-hhcccCChHHHHH-HHHHHH-------HHhhCC-Ccchhh-----hHHHHH-HHHHHH
Q 035493 138 --SWRALALIAAVPCLLQVVG-LFFIPESPRWLKK-SLKLLY-------SALRGK-TADISM-----ESADIR-VGVGLM 199 (305)
Q Consensus 138 --~wr~~~~~~~~~~~~~~~~-~~~~~es~~~~~~-~~~~~~-------~~~~~~-~~~~~~-----~~~~~~-~~~~~~ 199 (305)
+||..|.+.+++.++..+. +++.+|+|+.... +.++.. ++..++ +.+..+ ..++.. +.....
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 266 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFA 266 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHH
Confidence 5999888877776665443 3456776643110 000000 000000 000001 011111 333333
Q ss_pred HHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 200 VMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
.++.........+|.|.++++ .|++. .+++.......++..++.++.|+++||++||+........
T Consensus 267 ~~~~~~~~~~~~~~~p~yl~~~~g~s~-------~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 267 NIFLYIVRIGIDNWSPVYAFQELGFSK-------EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 333344455677899988876 68988 8888888889999999999999999999999876654333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=172.72 Aligned_cols=242 Identities=14% Similarity=0.025 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.......++.+...++....+...|.+.+++|+|.++.+++.+ ++..+.++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 344555566666777777778888999999999999999988766 78889999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHH
Q 035493 68 GWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALA 143 (305)
Q Consensus 68 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~ 143 (305)
+.++.++++|++.+++.|++.|++.|...+....++.|++|+|+|++++++.+.+.++|..+++.+.. ..|||+.|
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887663 45999999
Q ss_pred HHhHHHHHHHH-HHhhcccCChHHHHH--------HHHHHHHHhhCCCcchhhhH-----HHHH-HHHHHHHHhhhhchh
Q 035493 144 LIAAVPCLLQV-VGLFFIPESPRWLKK--------SLKLLYSALRGKTADISMES-----ADIR-VGVGLMVMQPLVGSA 208 (305)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~~es~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 208 (305)
++.++..++.. +..+++||+|++... ++++..++.++++.+.++.. ++.+ +......+.......
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRA 260 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 99887766554 344567887754210 00000000000000111111 1111 222333333333445
Q ss_pred HHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035493 209 AIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS 260 (305)
Q Consensus 209 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 260 (305)
.+..|.|.++++ .|++. .+++.......++..+++++.|++.||+
T Consensus 261 ~~~~~~p~~l~~~~g~s~-------~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 261 AINDWGNLYMSETLGVDL-------VTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHhccCCCH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 667788888855 68988 8888888899999999999999999998
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=164.72 Aligned_cols=237 Identities=20% Similarity=0.167 Sum_probs=187.3
Q ss_pred ccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchh---HH
Q 035493 29 SVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAW---SL 81 (305)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~---~l 81 (305)
.....+++.+.+++|+|+|++|.+++.+ +...++++..+.++..+++.+.+ ++
T Consensus 29 VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~l 108 (417)
T COG2223 29 VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQL 108 (417)
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 3455688888899999999999998887 78888899999999998886555 99
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH----HHHhhhhhh---hHHHHHHhHHHHHHHH
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV----IYLVGTVVS---WRALALIAAVPCLLQV 154 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~----~~~i~~~~~---wr~~~~~~~~~~~~~~ 154 (305)
++.+++.|++ |+.+.....++++++|+|++|.++|+.. ..++|..+ +|.+....+ ||....+..+..++..
T Consensus 109 l~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~ 186 (417)
T COG2223 109 LVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA 186 (417)
T ss_pred HHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999 7888999999999999999999999998 66666655 555556667 9999988888777755
Q ss_pred H-HhhcccCChHHHHH--HHH-HHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccC
Q 035493 155 V-GLFFIPESPRWLKK--SLK-LLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGN 229 (305)
Q Consensus 155 ~-~~~~~~es~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 229 (305)
+ .++...|.|+...+ +.+ +.++...+++ ..|.+.+.++..+.++..+..+.|.++++ .|.++
T Consensus 187 v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~---------~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~---- 253 (417)
T COG2223 187 VLAWLGMNDVPEHRASVKPQLPAQLKAVFSNK---------DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSP---- 253 (417)
T ss_pred HHHHHHhCCChhhhccccccchhHHHHHhcCc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh----
Confidence 4 45667776653211 001 1111111111 11777888888888899999999999988 49999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 230 DSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
.+++.......+.+.+.++.+|+++||+|.+|.....+..+.++...++..
T Consensus 254 ---~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 254 ---VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred ---hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 888899999999999999999999999999999998888887777766643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=169.53 Aligned_cols=245 Identities=16% Similarity=0.158 Sum_probs=180.2
Q ss_pred hhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchh
Q 035493 24 VAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAW 79 (305)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~ 79 (305)
+....+.....+..|.+.+++|.|+++.+++.+ .+..+..+..++.+...++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 344556677888999999999999999987776 77788888899999999999999
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHH
Q 035493 80 SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVV 155 (305)
Q Consensus 80 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~ 155 (305)
.+.+.|++.|++.+...+...+++.|++|+++|++..+..+....+|..+++.++. ..+||+.+++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888887774 34899999988777666554
Q ss_pred H-hhcccCChHHHHH-HHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCc
Q 035493 156 G-LFFIPESPRWLKK-SLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDS 231 (305)
Q Consensus 156 ~-~~~~~es~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 231 (305)
. .+..||+++...+ +.++..++.+ +..++.+ +..................+.|.++++ .|.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 241 (385)
T TIGR00710 175 LIFFILPETLPYEARIQISTYFETFL-------LLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSP------ 241 (385)
T ss_pred HHHHhCCCCCCCcccCCHHHHHHHHH-------HHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCH------
Confidence 3 3556776532111 0011111100 0000000 222222222233344555666777764 68888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 232 MNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.+.+.......++.+++.++.+++.||+++|+....+.....++...+..
T Consensus 242 -~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 242 -SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999888776666665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=172.06 Aligned_cols=261 Identities=20% Similarity=0.191 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHH
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLF 64 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~ 64 (305)
+++++.....+.++.+.++++....++..|.+.+++|++.++.+++.+ .+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 455666777788888889999999999999999999999999887666 77888888
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhH
Q 035493 65 CIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWR 140 (305)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr 140 (305)
..++.+..++++|++.+++.|++.|++.+...+....++.|++|+|+|+++.++...+..+|..+++.+.. ..+||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999988887764 44899
Q ss_pred HHHHHhHHHHHHHHHHhhcccCChHHHHHHHH-----HHHHHhhCCCcchhhhHHHH-----------------------
Q 035493 141 ALALIAAVPCLLQVVGLFFIPESPRWLKKSLK-----LLYSALRGKTADISMESADI----------------------- 192 (305)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------------------- 192 (305)
+.|++..+..++..+.....||++++..++.+ +..+.....+.+........
T Consensus 175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (496)
T PRK03893 175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL 254 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence 99988666555544445567887654322110 00000000000000000000
Q ss_pred ------------------H----HHHHHHHHhhhhchhHHHHhHHHHHH-HhcccccccCCcchhHHHHHHHHHHHHHHH
Q 035493 193 ------------------R----VGVGLMVMQPLVGSAAIACYASYIFA-AAELMNIQGNDSMNLLFVTDLLTAIIQLPA 249 (305)
Q Consensus 193 ------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (305)
+ .......+..+........+.|.+++ +.|++. .+.+.......++..++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-------~~~g~~~~~~~~~~~~g 327 (496)
T PRK03893 255 GLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-------HTVANVLFFSGFGAAVG 327 (496)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-------HHHHHHHHHHHHHHHHH
Confidence 0 00000001111111224456788885 578988 88999999999999999
Q ss_pred HHHHHHhhcccCCchhhhhHhHHHHHH
Q 035493 250 IVASVLLTDKSGRRPLLLASDIGTCLS 276 (305)
Q Consensus 250 ~~~~~~l~d~~g~r~~~~~~~~~~~~~ 276 (305)
.++.+++.||++||+.+..+..+..+.
T Consensus 328 ~~~~g~l~dr~g~~~~~~~~~~~~~~~ 354 (496)
T PRK03893 328 CCVGGFLGDWLGTRKAYVCSLLISQLL 354 (496)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999999887765554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=169.18 Aligned_cols=263 Identities=19% Similarity=0.093 Sum_probs=188.9
Q ss_pred CchHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHH
Q 035493 7 SAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSD 62 (305)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~ 62 (305)
+.+++.+.......+..+...++.+...|..|.+.+++|.|+++.++..+ ++..+.
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 85 (406)
T PRK15402 6 RLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85 (406)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 33566677777777888888888888899999999999999999887666 677888
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhh
Q 035493 63 LFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVS 138 (305)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~ 138 (305)
.+..++.....++++++.+++.|+++|++.+...+.....+.|++|+++|.+..++......+|..++|.++ +..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 888889999999999999999999999999988899999999999999999999988877777777777766 3458
Q ss_pred hHHHHHHhHHHHHHHHHH-hhcccCChHHHHHH-H-HHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhH
Q 035493 139 WRALALIAAVPCLLQVVG-LFFIPESPRWLKKS-L-KLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYA 214 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~~-~~~~~es~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 214 (305)
||+.|++.++..++..+. ....||+++...++ . ++..++.+ +..++.+ +......+...........+.
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYK-------LVLKNRRFVAGALALGLVSLPLLAWIALS 238 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHH-------HHHcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888777666543 35577765421111 0 00000000 0011111 222222222222223344456
Q ss_pred HHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 215 SYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 215 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
|.++++ .|.++ .+.+.......++.+++.++.+++.||.++|+....+.....++...+...
T Consensus 239 p~~~~~~~g~~~-------~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 239 PVILISGEQLSS-------YEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred HHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655 68887 777777777778889999999999999999999888877666666655543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=177.17 Aligned_cols=259 Identities=16% Similarity=0.061 Sum_probs=192.1
Q ss_pred HHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHH
Q 035493 16 TLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLA 71 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~ 71 (305)
...+.++.+...++....++..|.+.+++|.+.++.+++.+ .+..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44566677888889999999999999999999999988766 888899999999999
Q ss_pred HHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhH
Q 035493 72 IAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAA 147 (305)
Q Consensus 72 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~ 147 (305)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+++.++. ..+||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999888887774 349999999987
Q ss_pred HHHHHHHHH-hhcccCChHHHHH--HHH-------------HHHH------------------------------HhhCC
Q 035493 148 VPCLLQVVG-LFFIPESPRWLKK--SLK-------------LLYS------------------------------ALRGK 181 (305)
Q Consensus 148 ~~~~~~~~~-~~~~~es~~~~~~--~~~-------------~~~~------------------------------~~~~~ 181 (305)
..+++..+. .+..||+++...+ +.. .... +.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDD 243 (485)
T ss_pred HHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 776665543 3445654321100 000 0000 00000
Q ss_pred Ccchh-hhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035493 182 TADIS-MESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTD 258 (305)
Q Consensus 182 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 258 (305)
++..+ +..++.+ .......+......+...++.|.++++ .|+++ .+++.......++..++.++.+++.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 244 NPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTA-------LQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred CCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 0001100 222233333333455666778888887 58888 88999999999999999999999999
Q ss_pred ccCCchhhhhHhHHHHHHHHHHH
Q 035493 259 KSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 259 ~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
|++||+....+..+..++...+.
T Consensus 317 r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 317 KIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 99999998888777766665544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=168.37 Aligned_cols=252 Identities=19% Similarity=0.187 Sum_probs=183.4
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHH
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLF 64 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~ 64 (305)
+++++.......+..+..+++....++..|.+.+++|.++.+.+++.+ .+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 344555556666667777888888888999999999999999887766 77778888
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhH
Q 035493 65 CIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWR 140 (305)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr 140 (305)
..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+.. ..+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 88888888899999999999999999999999999999999999999999999999999999888887763 44899
Q ss_pred HHHHHhHHHHHHHH-HHhhcccCChHHHHHH----HHHHHHHhh------------CCCc--chhhh-HH---H---H--
Q 035493 141 ALALIAAVPCLLQV-VGLFFIPESPRWLKKS----LKLLYSALR------------GKTA--DISME-SA---D---I-- 192 (305)
Q Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~es~~~~~~~----~~~~~~~~~------------~~~~--~~~~~-~~---~---~-- 192 (305)
+.+++.++..++.. +...++||++++..++ .++..++.. +.+. +..++ .+ + .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI 251 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHH
Confidence 99998865544444 4456688877543321 111111000 0000 00000 00 0 0
Q ss_pred HHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 035493 193 RVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLL 267 (305)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~ 267 (305)
........+...........|.|.+.++.|.++ .+.+.......++.+++.++.+++.||++||+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSL-------SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 022223333333445566677887777788888 78888889999999999999999999999984443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=165.38 Aligned_cols=232 Identities=13% Similarity=0.045 Sum_probs=167.8
Q ss_pred cccccccchhhhhhh-hhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh-----cc
Q 035493 28 CSVGYSSPVEAGITA-DLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS-----KD 77 (305)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~-----~~ 77 (305)
......+++.+.+.+ |+|+|.+|.+++.+ ++..+.++..+.++..+++ +|
T Consensus 48 ~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s 127 (462)
T PRK15034 48 CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP 127 (462)
T ss_pred HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 355667888888766 89999999998777 7788888888999988887 89
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh---------h-------------
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG---------T------------- 135 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~---------~------------- 135 (305)
++.+++.|++.|++ +..++.....+++|+|+|+||++.|+.....++|..+++.+. .
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999998 778999999999999999999999999766666665443322 1
Q ss_pred hhhhHHHHHHhHHHHHHHHHHh-hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhH
Q 035493 136 VVSWRALALIAAVPCLLQVVGL-FFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYA 214 (305)
Q Consensus 136 ~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (305)
..+||.+.++..++.++..+.. +..+|.|+. +.+.++..+-.++++. +.....+++.+..+.++.++.
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~~~~~~~~~vlk~~~~----------Wllslly~~tFG~fvg~s~~l 275 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIASS-RASIADQLPVLQRLHL----------WLLSLLYLATFGSFIGFSAGF 275 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-ccCHHHHHHHhCCCch----------hHHHHHHHHHHHHHHHHHHHH
Confidence 2348888888777766665444 344443321 0011111222222221 666777777777788888899
Q ss_pred HHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHH
Q 035493 215 SYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
|.+.++ .++. ........+..+...+.++++|+++||+|+||.+..+.+.+.+....
T Consensus 276 p~~~~~-~~~~-------~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 276 AMLAKT-QFPD-------VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHH-HcCh-------HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 988766 4444 33333345566888899999999999999999999888766665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=171.02 Aligned_cols=240 Identities=14% Similarity=0.042 Sum_probs=169.8
Q ss_pred cccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 035493 30 VGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGR 85 (305)
Q Consensus 30 ~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 85 (305)
....++..|.+++|+|+|.++.+++.+ ++..+..+..++.+++++++|++.+++.|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999998877 77888999999999999999999999999
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHh-hcc
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGL-FFI 160 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~-~~~ 160 (305)
++.|++.+..++.....+.|++| |+|+++.+....+.++|..+++.+. +..+||+.|++.++..++..+.. ++.
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999988888888999987 5699999999999999887655444 23489999999888877765444 445
Q ss_pred cCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHH
Q 035493 161 PESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTD 239 (305)
Q Consensus 161 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 239 (305)
+|+|+...++.++ .++++.+..+..++.+ +......+...........+.+.+.++.|.++ .+.+...
T Consensus 178 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 246 (377)
T TIGR00890 178 GYPPGQLIKTNIE----VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSD-------GFLVLAV 246 (377)
T ss_pred ecCchhccccCcc----cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCH-------HHHHHHH
Confidence 5544311000000 0000000001111111 22222222222223333344555667778777 7778888
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 240 LLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
....+...+++++.+++.||++||+.+..+.....++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 247 SISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999998887777666655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=164.11 Aligned_cols=214 Identities=13% Similarity=0.024 Sum_probs=145.9
Q ss_pred ccccchhhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHHHHHHHHHh-hcchhHHHHHHH
Q 035493 31 GYSSPVEAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCIFGWLAIAF-SKDAWSLYLGRC 86 (305)
Q Consensus 31 ~~~~~~~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~ 86 (305)
..+++..|.+++|+|+|+++.|++.+ .+..+.....+....... .+|++.+++.|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34688999999999999999998877 223333333333333333 379999999999
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHH-Hhhccc
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVV-GLFFIP 161 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~-~~~~~~ 161 (305)
++|++.+. .+.....++|++|+|+|++++++.+.+..+|..+++.++.. .|||+.|++.++++++..+ ..+++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999886 55666667999999999999999999999999988877744 4999999997777666554 456789
Q ss_pred CChHHHHHH--HHHHHHHhhCCCcchhhhHHH-HHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHH
Q 035493 162 ESPRWLKKS--LKLLYSALRGKTADISMESAD-IRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVT 238 (305)
Q Consensus 162 es~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 238 (305)
|+|++..++ .++..++. .+..++ ..+......++.....+.+..|.|.++++.|++. + .+..
T Consensus 167 ~~p~~~~~~~~~~~~~~~~-------~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-------~-~~~~ 231 (368)
T TIGR00903 167 ALPFQAAEGFGFKDAVKEF-------GALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-------I-AGDA 231 (368)
T ss_pred CCCCCCCCCcchHHHHHHH-------HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-------H-HHHH
Confidence 988643210 00000000 011111 1145555666666678888899999998878766 4 4444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCc
Q 035493 239 DLLTAIIQLPAIVASVLLTDKSGRR 263 (305)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~g~r 263 (305)
.....+.+.++ .+++.||.+||
T Consensus 232 ~~l~~~~g~~g---~~~~~d~~~r~ 253 (368)
T TIGR00903 232 VALAILAGLIG---VAVIPDRVARA 253 (368)
T ss_pred HHHHHHHHHHH---HHHhhHHhhhh
Confidence 44444444444 57788877654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=170.04 Aligned_cols=248 Identities=8% Similarity=0.010 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhh----------------------hhcCCchhHHHHHH----------
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITA----------------------DLGLSLIEYSVFGS---------- 56 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s---------- 56 (305)
.+.++.+...+.++......|+...+...+.+.+ |++++..+.|++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4456666666666666777787777777776665 78999999887766
Q ss_pred --------------HHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHH
Q 035493 57 --------------AMWLSDLFCIFGWLAIAFS--KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQ 120 (305)
Q Consensus 57 --------------~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 120 (305)
++..+.++.+++.+++.++ ++++.+++.|+++|++.+...+....++.|++|+++|+++.++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777888887776543 568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----hh-hhhHHHHHHhHHHHHHHHHHh-hcccCChHHHHH---HHHHHHHHh-hCCC--cchhhh
Q 035493 121 LLVASGLSVIYLVG----TV-VSWRALALIAAVPCLLQVVGL-FFIPESPRWLKK---SLKLLYSAL-RGKT--ADISME 188 (305)
Q Consensus 121 ~~~~~G~~~~~~i~----~~-~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~---~~~~~~~~~-~~~~--~~~~~~ 188 (305)
.+..+|..+++.+. .. .+||+.|++.++.+++..+.+ ...+|+|+...+ ++++..++. ++++ .+....
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 253 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLP 253 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCC
Confidence 99999998888776 33 389999999888877766554 446666653221 111111111 1110 000011
Q ss_pred HHH----H-HHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 189 SAD----I-RVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 189 ~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
.++ . .+......+......+.+..|.|.++++ .|++. .+.+.......++..++.++.|+++||.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~-------~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~ 326 (465)
T TIGR00894 254 IKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG-------KENGLLSSLPYLFAWLCSIFAGYLADFLKS 326 (465)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 1444555555666677788899999877 58888 888888889999999999999999999765
Q ss_pred c
Q 035493 263 R 263 (305)
Q Consensus 263 r 263 (305)
|
T Consensus 327 ~ 327 (465)
T TIGR00894 327 S 327 (465)
T ss_pred c
Confidence 4
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=164.41 Aligned_cols=256 Identities=10% Similarity=0.002 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
+.....+....+..+..+++....++..|.+++++|+|+++.++..+ ++..+..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33444555556667788888888999999999999999999987776 888899999
Q ss_pred HHHHHHH---HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh------
Q 035493 66 IFGWLAI---AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV------ 136 (305)
Q Consensus 66 ~~~~~~~---~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~------ 136 (305)
.++++++ .++++++.++++|+++|+|.|...+..+.++.|+.|+++|++.++..+..+.+|..+++.++..
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998775 5689999999999999999999999999999998877777778899999988998888876421
Q ss_pred ------------------------hhhHHHHHHhH-HHHHHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHH
Q 035493 137 ------------------------VSWRALALIAA-VPCLLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESA 190 (305)
Q Consensus 137 ------------------------~~wr~~~~~~~-~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (305)
.+||++|+... +..++..+. ....||.+.. +.++ ++.++...+.++..+
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~~--~~~~~~~~~~~~ll~ 256 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD--AKQGSFSASLSRLAR 256 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cccc--ccccchhhhHHHHHh
Confidence 25666675433 333333222 2345653321 0000 000000000011111
Q ss_pred HHH-HHHHHHHHhhhhchhHHHHhHHHHH-HH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 035493 191 DIR-VGVGLMVMQPLVGSAAIACYASYIF-AA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLL 267 (305)
Q Consensus 191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~ 267 (305)
+.+ +...+..+...........|.+.++ ++ .|+++ .+++.......++.+++++.++++.||+++|+.+.
T Consensus 257 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~-------~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~ 329 (438)
T PRK10133 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 111 1222223333344454556667664 44 58998 88999999999999999999999999999999887
Q ss_pred hHhHHHHHHH
Q 035493 268 ASDIGTCLSL 277 (305)
Q Consensus 268 ~~~~~~~~~~ 277 (305)
.+..+..+.+
T Consensus 330 ~~~~~~~~~~ 339 (438)
T PRK10133 330 AYALIAMALC 339 (438)
T ss_pred HHHHHHHHHH
Confidence 7765554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=165.04 Aligned_cols=240 Identities=13% Similarity=0.056 Sum_probs=161.6
Q ss_pred HHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHH
Q 035493 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFG 68 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~ 68 (305)
+..........+...++.....+..|.+.+++|++.++.+++.+ ++..+.++..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33333444444555555566778899999999999999887655 677788888888
Q ss_pred HHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH----HHhhh---------
Q 035493 69 WLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI----YLVGT--------- 135 (305)
Q Consensus 69 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~i~~--------- 135 (305)
.++.+++++++.+++.|++.|++.+... ....+++|++|+++|+++.++.....++|..++ +.+..
T Consensus 115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 193 (476)
T PLN00028 115 VFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS 193 (476)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 8889999999999999999999987644 456678999999999999999876655555554 33321
Q ss_pred hhhhHHHHHHhHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHhhCCCcchhhhHH----HHH-HHHHHHHHhhhhchhH
Q 035493 136 VVSWRALALIAAVPCLLQVVGLFFI-PESPRWLKKSLKLLYSALRGKTADISMESA----DIR-VGVGLMVMQPLVGSAA 209 (305)
Q Consensus 136 ~~~wr~~~~~~~~~~~~~~~~~~~~-~es~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 209 (305)
..|||+.|++.+++.++..+..+++ +|.|+...++.++ +.+.++.+..+..+ +.+ +.....++........
T Consensus 194 ~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (476)
T PLN00028 194 FTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKK---SGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELT 270 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHh---cCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 2489999999888877665554443 3444311011000 00000001111111 111 2333333333333345
Q ss_pred HHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 035493 210 IACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRR 263 (305)
Q Consensus 210 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r 263 (305)
...+.|.++.+ .|++. .+++.......++..+++++.|+++||++||
T Consensus 271 ~~~~~p~~l~~~~g~s~-------~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSL-------ETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHhHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 56677887766 59988 8888999999999999999999999999865
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=167.34 Aligned_cols=236 Identities=22% Similarity=0.307 Sum_probs=167.1
Q ss_pred chhhhhhhhhcCC---chhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 035493 35 PVEAGITADLGLS---LIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCS 87 (305)
Q Consensus 35 ~~~~~~~~~~~~s---~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 87 (305)
+..|.+.+|+|++ ..+.++..+ ++..+.++..++.++.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999998 777776665 7888889999999999999999999999999
Q ss_pred HhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhHHHHHHHHHHhhcccCChHH
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-SWRALALIAAVPCLLQVVGLFFIPESPRW 166 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-~wr~~~~~~~~~~~~~~~~~~~~~es~~~ 166 (305)
.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++... +||+.+++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999887655 79999999998888777777889999998
Q ss_pred HHH-----HHHHHHHHhhCCC--------------------c---chhhhHHHHH-HHHHHHHHhhhhchhHHHHhH-HH
Q 035493 167 LKK-----SLKLLYSALRGKT--------------------A---DISMESADIR-VGVGLMVMQPLVGSAAIACYA-SY 216 (305)
Q Consensus 167 ~~~-----~~~~~~~~~~~~~--------------------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~ 216 (305)
+.. ++++..++..+.+ . ...+..++.+ +........... .....+|. +.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 348 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-TTAFSYYGLVL 348 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 754 2222222111000 0 0000000011 111111111111 11222222 22
Q ss_pred HHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 217 IFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
...+.+.+ ........++..+++.++.+++.||+|||+.+..+..+.+++++.+.
T Consensus 349 ~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~ 403 (505)
T TIGR00898 349 DLGNLGGN----------IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL 403 (505)
T ss_pred cccccCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 22222322 23445566788899999999999999999999988877777666554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=161.55 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=170.0
Q ss_pred HHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHH
Q 035493 15 STLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWL 70 (305)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~ 70 (305)
......+..+....+.....|.+|.+.+++|.+.++.++..+ ++..+..++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 333445556677778889999999999999999999887666 78888999999999
Q ss_pred HHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHh
Q 035493 71 AIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIA 146 (305)
Q Consensus 71 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~ 146 (305)
.+.+++|++.++++|+++|++.+...+....++.|++|+++|++.+++......+|..++|.++. ..|||+.|++.
T Consensus 97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999988777777888999999999999999999888888888887774 44899999998
Q ss_pred HHHHHHHHHH-hhcccCChHHHHHH--HHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh-
Q 035493 147 AVPCLLQVVG-LFFIPESPRWLKKS--LKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA- 221 (305)
Q Consensus 147 ~~~~~~~~~~-~~~~~es~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (305)
++..++..+. .+.+||+++...++ .++..++. .+..++.+ +......+...........+.|.++++.
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~ 249 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDF-------RNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAG 249 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHH-------HHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc
Confidence 8877766644 45678865411000 00000000 01111111 2223333333334455666678888875
Q ss_pred cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 035493 222 ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPL 265 (305)
Q Consensus 222 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~ 265 (305)
|.++ .+.+........+..+++.+.+.+.+|..+++.
T Consensus 250 g~s~-------~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 250 GMTT-------SQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred CCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 8888 778887777778888888777776654444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=166.58 Aligned_cols=233 Identities=20% Similarity=0.098 Sum_probs=172.6
Q ss_pred hhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhH
Q 035493 25 AYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWS 80 (305)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~ 80 (305)
...+|....+...|.+++++|.++++.+++.+ .+..+.++..++....++++|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 44456677888889999999999999988776 677788888899999999999999
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~ 156 (305)
+++.|++.|++.+...+....++.|++|+|+|++..++.+....+|..+++.++.. .+||+.|++.++..++..+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887754 48999999988876665544
Q ss_pred h-hcccCChHHHH---HHHHHH-HHHhh----C--CCcc----hhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH
Q 035493 157 L-FFIPESPRWLK---KSLKLL-YSALR----G--KTAD----ISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA 220 (305)
Q Consensus 157 ~-~~~~es~~~~~---~~~~~~-~~~~~----~--~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (305)
. ...||+|+... ++.++. .++.+ + ++.+ ..+..++.+ +......+...........+.|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T TIGR00893 165 WLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQ 244 (399)
T ss_pred hhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3 44666553211 111110 01000 0 0000 011111111 333333444444556667778888766
Q ss_pred -hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCch
Q 035493 221 -AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRP 264 (305)
Q Consensus 221 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~ 264 (305)
.|.++ .+.+.......+...++.++.+++.||++||+
T Consensus 245 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 245 ERGLSI-------LEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HhcccH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 58877 78888888999999999999999999999986
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=159.63 Aligned_cols=249 Identities=18% Similarity=0.094 Sum_probs=166.6
Q ss_pred hhhhcccccccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc-c
Q 035493 24 VAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK-D 77 (305)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~-~ 77 (305)
+....+.....+..|. +++++|+|+.+.+++.+ .+..+.++..++.+++++++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~ 90 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334455667888895 99999999999998777 78889999999999999999 9
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----h----------hhhhHHHH
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----T----------VVSWRALA 143 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~----------~~~wr~~~ 143 (305)
++.+++.|+++|++.+ ..+....+++|++|+|+|+++.++.....++|..+++.++ . ..+||+.|
T Consensus 91 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999999999955 4566788999999999999999998866666655554443 3 23799999
Q ss_pred H-HhHHHHHHH-HHHhhcccCChHHHHHHHHHHHHHhhCC-Cc----chhhhHHHHH-HHHHHHHHhhhhchhHHHHhHH
Q 035493 144 L-IAAVPCLLQ-VVGLFFIPESPRWLKKSLKLLYSALRGK-TA----DISMESADIR-VGVGLMVMQPLVGSAAIACYAS 215 (305)
Q Consensus 144 ~-~~~~~~~~~-~~~~~~~~es~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 215 (305)
+ ..++...+. .+.....+|+|+...++.+...++.+.. ++ +..+..++.+ +......+...........+.|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (366)
T TIGR00886 170 VIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFA 249 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4 434443333 3334555665542111111000000000 00 0011111111 2333333333334556677778
Q ss_pred HHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 216 YIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 216 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
.++++ .|+++ .+++.......+..++++++.+++.||+|||+....+......+...+
T Consensus 250 ~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 308 (366)
T TIGR00886 250 MFFKDQFGLSK-------VTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLV 308 (366)
T ss_pred HHHHHHcCCcH-------HHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHH
Confidence 88876 48888 888888888899999999999999999999987776665554444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=161.75 Aligned_cols=253 Identities=19% Similarity=0.172 Sum_probs=180.5
Q ss_pred hhhhhhhcccccccchhh-hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh
Q 035493 21 CGSVAYGCSVGYSSPVEA-GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS 75 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~ 75 (305)
++.+....+.....+..| .+.+++|.+.++.+++.+ ++..+.++..++.....++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 344555566777888888 899999999999998777 8888888888886666677
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCL 151 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~ 151 (305)
+|++.+++.|++.|++.+...+....++.|++|+|+|+++.++......+|..+++.++.. .+||+.|++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 8888999999999999999999999999999999999999999999999999999888854 489999999999888
Q ss_pred HHHHH-hhcccCChHHHHHHHHHHH-HHhhCCCcchhhhHHHHH--HHHHHHHHhhhhchhHHHHhHHHH-HHHhccc-c
Q 035493 152 LQVVG-LFFIPESPRWLKKSLKLLY-SALRGKTADISMESADIR--VGVGLMVMQPLVGSAAIACYASYI-FAAAELM-N 225 (305)
Q Consensus 152 ~~~~~-~~~~~es~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~ 225 (305)
+..++ ..+.+|+|+...++.++.. ++.+++..+..+..++.+ +......+...........+.|.+ .++.|.+ .
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGP 242 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTH
T ss_pred hhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHH
Confidence 87654 2444443331111100000 000000001011111111 223344444433456677888887 4557888 6
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 226 IQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
.+.+.......+...++.++.+++.||+++|+..........+..+.+
T Consensus 243 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T PF07690_consen 243 -------SQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL 290 (352)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999887776655555444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=168.45 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
+.......+.++....+..|.+.+..+.+.+++.||++++..|++.+ ++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34455566677778889999999999999999999999999987777 788999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhH
Q 035493 66 IFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWR 140 (305)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr 140 (305)
.++.+++++++.||++.++|.+.|+|.+...|.++++++|.+|.++|++++++++.+.++|..+|.+.+... .||
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 999999999999999999999999999999999999999999999999999999999999998888777443 499
Q ss_pred HHHHHhHHHHHHHHHHh-hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH--------HHHHHHHHhhhhchhHHH
Q 035493 141 ALALIAAVPCLLQVVGL-FFIPESPRWLKKSLKLLYSALRGKTADISMESADIR--------VGVGLMVMQPLVGSAAIA 211 (305)
Q Consensus 141 ~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 211 (305)
|.|+..++++++..++. ++.+|++|. +++..++..+...+.....++.+ ....+.+.........+.
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~rg----a~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~s 264 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPERG----ARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLS 264 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCcccc----cccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccc
Confidence 99999999988887655 667776542 11111111100011111122221 111111111111123334
Q ss_pred HhHHHHH----HHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035493 212 CYASYIF----AAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS 260 (305)
Q Consensus 212 ~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 260 (305)
.|.|.+. +-.|.+. ++......+...++.+|.+.+|.++||+
T Consensus 265 ww~p~~~~~~~~~~~~~~-------~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 265 WWAPAFIYYSYELIGFDH-------NATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred hhhhhHHHHHHHHhCCcc-------ccchhhhhHHHhhchhhheehHHHHHHH
Confidence 4444433 3346666 6666778888899999999999999984
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=161.41 Aligned_cols=232 Identities=16% Similarity=0.159 Sum_probs=171.1
Q ss_pred ccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 035493 29 SVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLG 84 (305)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (305)
......|..|.+.+++|+|+++.+++.+ .+..+..+..++...+.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3455678999999999999999987766 7788888889999999999999999999
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHH-Hhhc
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVV-GLFF 159 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~-~~~~ 159 (305)
|++.|++.+...+...+++.|++|+++|+++.++......+|..+++.++. ..+||+.|++.+...++..+ ..+.
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988888887763 44899999988777766554 3456
Q ss_pred ccCChHHHHHHH---HHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchh
Q 035493 160 IPESPRWLKKSL---KLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNL 234 (305)
Q Consensus 160 ~~es~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 234 (305)
.||+++...++. ++..+.. .+..++.+ +......+....+.+....+.|.++.+ .|.++ .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-------~~ 231 (377)
T PRK11102 166 IPETLPKERRQPFHLRTTIRNF-------ASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSP-------QN 231 (377)
T ss_pred CCccCcccccCCCChHHHHHHH-------HHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCH-------HH
Confidence 777543111000 0000000 00011111 222222222333344445555666655 68888 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 235 LFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
.+.......+..+++.++.+++.||+|||+.+..+.....
T Consensus 232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 232 FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998887765443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=157.39 Aligned_cols=235 Identities=17% Similarity=0.090 Sum_probs=167.8
Q ss_pred cccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 035493 28 CSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYL 83 (305)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (305)
+..+...|..|.+++++|.++++.++..+ .+..+..+..++...+.++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 35566788889999999999999998777 777788888888999999999999999
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHhhc
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGLFF 159 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~~~ 159 (305)
.|+++|++.+...+...+.+.|++|+++|++..+.......+|..++|.++ +..+||+.|++.++..++..+..++
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888889999999999999888888777777777777665 4459999999888777776655555
Q ss_pred ccCChHHHHH-HHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHH
Q 035493 160 IPESPRWLKK-SLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVT 238 (305)
Q Consensus 160 ~~es~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 238 (305)
++|+++...+ +.++..++..+++ +. +..................+.|.+.++.|+++ .+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~-------~~~g~~ 243 (401)
T PRK11043 180 LKPSKKARKQSQDALTFKQLLKSK--------TY-LGNVLIFAACSAAFFAWLTGSPFILEQMGYSP-------ADIGLS 243 (401)
T ss_pred cCCCCCccccchHHHHHHHHHcCh--------hH-HHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCH-------HHHHHH
Confidence 5554431111 1111111111110 00 11111222222233455567788888888888 778877
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 239 DLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
.....++..++++..+++.||+++|+..........++..
T Consensus 244 ~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 244 YVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 7777888899999999999999998876555444444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=163.65 Aligned_cols=248 Identities=15% Similarity=0.066 Sum_probs=181.3
Q ss_pred HHHHHHhhhhhhhcccccc-cchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH
Q 035493 15 STLVAICGSVAYGCSVGYS-SPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW 69 (305)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~ 69 (305)
+...++...+....+.... .+.+..+.+|.+....+.+.+.+ .+....+.+++..
T Consensus 46 i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~ 125 (495)
T KOG2533|consen 46 ILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFG 125 (495)
T ss_pred HHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3334444445555554332 33344466888888888877666 5566666666666
Q ss_pred HHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh-------h---hh
Q 035493 70 LAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV-------V---SW 139 (305)
Q Consensus 70 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~-------~---~w 139 (305)
++....+|++.+++.|++.|+.+++.+|....+++.|+.+++|++.++++.+..++|.+++.+++.. . ||
T Consensus 126 ~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 126 FLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 6777789999999999999999999999999999999999999999999999999999999999855 2 89
Q ss_pred HHHHHHhHHHHHHHHHH-hhcccCChH---HHHHHHHH-HHHHhhCCCc-chh--hhHHH-------HH-HHHHHHHHhh
Q 035493 140 RALALIAAVPCLLQVVG-LFFIPESPR---WLKKSLKL-LYSALRGKTA-DIS--MESAD-------IR-VGVGLMVMQP 203 (305)
Q Consensus 140 r~~~~~~~~~~~~~~~~-~~~~~es~~---~~~~~~~~-~~~~~~~~~~-~~~--~~~~~-------~~-~~~~~~~~~~ 203 (305)
||.|++.+++.++..+. .+++|+.|. .+.+++++ ..++.++.+. ... .+... .+ +...++.++.
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~ 285 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFL 285 (495)
T ss_pred eeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHH
Confidence 99999999888777654 577999987 22222211 1122221111 100 11111 11 6667777777
Q ss_pred hhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc----CCchhhhhH
Q 035493 204 LVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS----GRRPLLLAS 269 (305)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~----g~r~~~~~~ 269 (305)
....+++.+|+|.++++ .|++. .++.....+..++++++.+++++++||. .+|......
T Consensus 286 ~lv~~~~~~~lpl~l~~~~~~s~-------~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 286 KLVNYGFSYWLPLYLKSNGGYSE-------LQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred hhccccHHHHHHHHHHcCCCcCh-------HHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 77788899999999999 46888 8888999999999999999999999994 445444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=158.99 Aligned_cols=240 Identities=13% Similarity=0.056 Sum_probs=170.9
Q ss_pred cccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 035493 28 CSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYL 83 (305)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (305)
.......+..|.+.+++|.++++.++..+ .+..+..+..++.....++++++.+++
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA 96 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34444567899999999999999887766 777888888999999999999999999
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHHH-hh
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVVG-LF 158 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~~-~~ 158 (305)
.|+++|++.+...+....++.|++|+++|++..+..+....+|..++|.++. ..+||+.+++.++..++..+. ..
T Consensus 97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888888887763 448999999988776665543 45
Q ss_pred cccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHH
Q 035493 159 FIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLF 236 (305)
Q Consensus 159 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 236 (305)
..||+++...++.++..+ +..+..++.+ +..................+.|.++++ .|+++ .+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~ 242 (392)
T PRK10473 177 ILKETRPARAPAASSKPR-------ENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSR-------GEYA 242 (392)
T ss_pred HcCCCCCcccCCccchHH-------HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCH-------HHHH
Confidence 567764321100000000 0001111111 111111111111223334445665554 58888 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 237 VTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
......++..+++.++.+++.||+|||+....+.....++...+.
T Consensus 243 ~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 243 IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999998887776665555444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-20 Score=161.44 Aligned_cols=258 Identities=15% Similarity=0.109 Sum_probs=182.0
Q ss_pred HHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 035493 17 LVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAI 72 (305)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~ 72 (305)
..+.++.+...++....++..|.+.+++|.++.+.+++.+ +++.+..+..++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888889999999999999999887766 6677788888888888
Q ss_pred HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHH
Q 035493 73 AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAV 148 (305)
Q Consensus 73 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~ 148 (305)
.++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.++ +..+||+.|++...
T Consensus 93 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 93 ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988888888887776 34599999999877
Q ss_pred HHHHHHHHh-hcccCChHHHHH--HH----------------HHH-------------------------HHHhhCCCcc
Q 035493 149 PCLLQVVGL-FFIPESPRWLKK--SL----------------KLL-------------------------YSALRGKTAD 184 (305)
Q Consensus 149 ~~~~~~~~~-~~~~es~~~~~~--~~----------------~~~-------------------------~~~~~~~~~~ 184 (305)
...+..+.. ...|+.+....+ .. .+. .++.+.+++.
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (471)
T PRK10504 173 VGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRAL 252 (471)
T ss_pred HHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 665554433 334443210000 00 000 0000000000
Q ss_pred hhhh-HHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 035493 185 ISME-SADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSG 261 (305)
Q Consensus 185 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 261 (305)
.+.+ .++.. .......+..........++.|++++. .|.++ .+.+.......++..++.++.+++.||+|
T Consensus 253 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g 325 (471)
T PRK10504 253 FSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSP-------FHAGLMMIPMVLGSMGMKRIVVQVVNRFG 325 (471)
T ss_pred cCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0001 11111 222222233333344556677888875 68888 78888888888888889899999999999
Q ss_pred CchhhhhHhHHHHHHHHHHH
Q 035493 262 RRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 262 ~r~~~~~~~~~~~~~~~~~~ 281 (305)
||+.+..+.....+....+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~ 345 (471)
T PRK10504 326 YRRVLVATTLGLALVSLLFM 345 (471)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 99999888776666655444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=160.82 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=172.8
Q ss_pred hhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhcccc
Q 035493 41 TADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK--DAWSLYLGRCSLGIGLEL 94 (305)
Q Consensus 41 ~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~ 94 (305)
+.+++++++|.+++.+ ++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 4578999999998877 88899999999999988774 556789999999999999
Q ss_pred hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hh-hhhHHHHHHhHHHHHHHHHHh-hcccCChHHHH
Q 035493 95 MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TV-VSWRALALIAAVPCLLQVVGL-FFIPESPRWLK 168 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~-~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~ 168 (305)
.+|+.....++|.|++||++..++...+..+|.+++..++ +. +||+.+|++.++.+++..+++ ++..|+|+.++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~ 224 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP 224 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999999999999999999999999999988888776555 33 699999999999998888776 55777776543
Q ss_pred H---HHHHHHHHhhCCCcch---hhhHHHHH-----HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHH
Q 035493 169 K---SLKLLYSALRGKTADI---SMESADIR-----VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLF 236 (305)
Q Consensus 169 ~---~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 236 (305)
. ++++..++-+.+.... ..+.++.. +...+..+....+.+.+..|.|.|+++ +|++. .+.+
T Consensus 225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v-------~~~G 297 (466)
T KOG2532|consen 225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDV-------RETG 297 (466)
T ss_pred CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh-------hhhh
Confidence 3 2222222222111111 11222221 788888888888999999999999998 69999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 237 VTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
...++..+...+..+++|.++||..+
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998765
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=157.47 Aligned_cols=242 Identities=14% Similarity=0.053 Sum_probs=169.5
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA 73 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~ 73 (305)
...++.+..+.+.+..++..|.+.+++|.|.++.|++.+ .+..+..+..++...++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667778888999999999999999999998877 77888899999999999
Q ss_pred hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhh---hHHHHHHhHHHH
Q 035493 74 FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVS---WRALALIAAVPC 150 (305)
Q Consensus 74 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~---wr~~~~~~~~~~ 150 (305)
+++|++.+++.|+++|++.+...+.....+.|..++++|+++++....+.++|..+++.++..+. ++...+..+...
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 99999999999999999999988988888889999999999999999999999999999885541 122222222221
Q ss_pred HHHH-HHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhccccccc
Q 035493 151 LLQV-VGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQG 228 (305)
Q Consensus 151 ~~~~-~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (305)
.... +.....+|+++ ++ ++..+..+..++.. +......+...........+.|.+.++.|.++
T Consensus 170 ~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~--- 234 (381)
T PRK03633 170 AAILPLLFTRILNQQA----EN--------HDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSD--- 234 (381)
T ss_pred HHHHHHHHhcccCCCC----CC--------CCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH---
Confidence 1111 12222232211 00 00001111111111 11111122222223445567788888888888
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 229 NDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
.+.+.......++.+++++..+++.||+++|+.+..+.....++..
T Consensus 235 ----~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 235 ----ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI 280 (381)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999999999988777666555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=157.77 Aligned_cols=251 Identities=13% Similarity=0.020 Sum_probs=174.9
Q ss_pred hhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc
Q 035493 21 CGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK 76 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~ 76 (305)
.+.+..........+..|.+.++++.++.+.+++.+ ++..+..+..++..+..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666788888899999999999988766 77777777777777777777
Q ss_pred -----chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhH
Q 035493 77 -----DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAA 147 (305)
Q Consensus 77 -----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~ 147 (305)
|++.+++.|++.|++.+...+...+++.|++|+++|++..++.+....+|..+++.++. ..+||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888774 449999999887
Q ss_pred HHHHHHHHHhhc--ccCChHHHHHHHH-HHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHH-HhHHHHHHH-h
Q 035493 148 VPCLLQVVGLFF--IPESPRWLKKSLK-LLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIA-CYASYIFAA-A 221 (305)
Q Consensus 148 ~~~~~~~~~~~~--~~es~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 221 (305)
+..++..+..+. .||+++...++.+ +..++.++ ..++..++.. +......+.......... .+.|.+.++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAASEIQALSNAVLRDTRE---GIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL 242 (365)
T ss_pred HHHHHHHHHHHhcccccCCCccccccchhHHHHHHh---HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 766555443332 3443321100000 00011100 0000001111 122222222222233333 667888876 6
Q ss_pred cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 222 ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 222 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
|.++ .+.+.......++.+++.++.+++.||.+||+....+....++++..+.
T Consensus 243 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (365)
T TIGR00900 243 GRGS-------THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG 295 (365)
T ss_pred CCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 8888 8888888999999999999999999999999988877666555554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=157.07 Aligned_cols=245 Identities=11% Similarity=-0.006 Sum_probs=168.7
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.......+.......+....+...|.+.++ |++.++.++..+ +++.+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 44444445555555555655567778888888 999999988766 78888888888
Q ss_pred HHHHHHhhc----chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHH-HHHHhh----hhhh
Q 035493 68 GWLAIAFSK----DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLS-VIYLVG----TVVS 138 (305)
Q Consensus 68 ~~~~~~~~~----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~----~~~~ 138 (305)
+.+..++++ +++.+++.|++.|++.+..++.....+.|++|+|+|++++++++.+.++|.. .++++. ...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g 185 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND 185 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 888887753 7888899999999999998888888899999999999999999998888764 455432 2239
Q ss_pred hHHHHHHhHHHHHHHH-HHhhcccCChHHHHH--HHH--HHHHHh-h-C--CCcchhhh-----HHHHH-HHHHHHHHhh
Q 035493 139 WRALALIAAVPCLLQV-VGLFFIPESPRWLKK--SLK--LLYSAL-R-G--KTADISME-----SADIR-VGVGLMVMQP 203 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~-~~~~~~~es~~~~~~--~~~--~~~~~~-~-~--~~~~~~~~-----~~~~~-~~~~~~~~~~ 203 (305)
||+.|++.++..++.. +..+++||+|+.... +++ +..++. + + ++.+..+. .++.. +...+..+..
T Consensus 186 w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (452)
T PRK11273 186 WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFV 265 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 9999999887766654 445667888764210 110 000000 0 0 00001110 01111 2333333333
Q ss_pred hhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCch
Q 035493 204 LVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS--GRRP 264 (305)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~r~ 264 (305)
....+....|.|.++++ .|++. .+++.......++.+++.++.|+++||+ +||+
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~-------~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 33456677889999987 58888 7788888888899999999999999998 4444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=157.20 Aligned_cols=252 Identities=11% Similarity=0.004 Sum_probs=175.5
Q ss_pred HHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 035493 17 LVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAI 72 (305)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~ 72 (305)
..++...+..|+..+..++..|.+++++|+|..+.+++.+ ++..+..+.+++..+.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3455667778888888999999999999999999998777 7888888888888775
Q ss_pred Hh---hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh-------------
Q 035493 73 AF---SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV------------- 136 (305)
Q Consensus 73 ~~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~------------- 136 (305)
.. .++++.+++.|++.|+|.|...+....++.|..|+++|++..++.+...++|..+++.+...
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 43 46899999999999999999999999999999999999999999999999999988877632
Q ss_pred -----------------hhhHHHHHHhHHHHHHHHHHhh--cccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHH
Q 035493 137 -----------------VSWRALALIAAVPCLLQVVGLF--FIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGV 196 (305)
Q Consensus 137 -----------------~~wr~~~~~~~~~~~~~~~~~~--~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 196 (305)
.+||++|++.+++.++..+... ..||.++. ++++. +...+.++..++.+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~ 237 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS---DAKQI-----SFSASLSRLARIRHYREG 237 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccccc-----cchhhHHHHHhChhHHHH
Confidence 2599999988877666544332 25553220 00000 00000001111111 222
Q ss_pred HHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHH
Q 035493 197 GLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLS 276 (305)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~ 276 (305)
....+.+.........|.+.+.++.+.+.. ...+............+|+++++++.||+++|+.+.++.....+.
T Consensus 238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~-----~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMT-----AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 333444444455566777777766432220 033344455556778999999999999999999887776666555
Q ss_pred HHHHH
Q 035493 277 LSIIA 281 (305)
Q Consensus 277 ~~~~~ 281 (305)
++...
T Consensus 313 ~ll~~ 317 (410)
T TIGR00885 313 CLGSI 317 (410)
T ss_pred HHHHH
Confidence 44443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=161.32 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=168.9
Q ss_pred hhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcch
Q 035493 23 SVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDA 78 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~ 78 (305)
.+...++....++..|.+.+++|++.++.+++.+ .+..+..+..++.++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 3455567777888899999999999999998776 7888889999999999999999
Q ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHH-hh----hhhhhHHHHHHhHHHHHHH
Q 035493 79 WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYL-VG----TVVSWRALALIAAVPCLLQ 153 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~-i~----~~~~wr~~~~~~~~~~~~~ 153 (305)
+.+++.|++.|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++. +. ...+||+.|++.++..++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988883 33 3458999999887776655
Q ss_pred H-HHhhcccCChHHHHH-HHHHH-HHH---hh--C-CC-cchhhhH----HHHH-HHHHHHHHhhhhchhHHHHhHHHHH
Q 035493 154 V-VGLFFIPESPRWLKK-SLKLL-YSA---LR--G-KT-ADISMES----ADIR-VGVGLMVMQPLVGSAAIACYASYIF 218 (305)
Q Consensus 154 ~-~~~~~~~es~~~~~~-~~~~~-~~~---~~--~-~~-~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
. +...+.||+|+.... +.++. .++ .+ + ++ .+.+... ++.. +......+...........+.|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYL 243 (379)
T ss_pred HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 444567776542111 00000 000 00 0 00 0000000 1111 2233333333334556667788887
Q ss_pred HH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 219 AA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 219 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
++ .|+++ .+.+.......++.++++++.+++.||..+
T Consensus 244 ~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 281 (379)
T TIGR00881 244 TQEKGFSK-------EKASWAFTLYELGGLVGTLLAGWLSDKLFN 281 (379)
T ss_pred HHHhCCCH-------HHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence 66 58888 888888999999999999999999998643
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=156.93 Aligned_cols=244 Identities=10% Similarity=-0.025 Sum_probs=168.2
Q ss_pred HHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHH
Q 035493 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFG 68 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~ 68 (305)
+.......+.......+........|.+++ +|+++++.+++.+ .+..+.++..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 444445555555555666666677787776 5999999998876 666777777787
Q ss_pred HHHHHhh----cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh-----hhhhh
Q 035493 69 WLAIAFS----KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG-----TVVSW 139 (305)
Q Consensus 69 ~~~~~~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~-----~~~~w 139 (305)
.+..++. ++++.+.+.|++.|++.|..++.....+.|++|+|+|++++++.+.+..+|..+++.+. ...+|
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 7776654 46778889999999999999998999999999999999999999999988888877654 23489
Q ss_pred HHHHHHhHHHHHHHH-HHhhcccCChHHHHH---HHH-HHH-HHh-hCCCc--chhhh-----HHHHH-HHHHHHHHhhh
Q 035493 140 RALALIAAVPCLLQV-VGLFFIPESPRWLKK---SLK-LLY-SAL-RGKTA--DISME-----SADIR-VGVGLMVMQPL 204 (305)
Q Consensus 140 r~~~~~~~~~~~~~~-~~~~~~~es~~~~~~---~~~-~~~-~~~-~~~~~--~~~~~-----~~~~~-~~~~~~~~~~~ 204 (305)
|..|++.++..++.. +..+++||+|+.... ++. +.. ++. ++++. +.++. .++.+ +......+...
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVY 264 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHH
Confidence 999999888876654 445667887753210 000 000 000 00000 00000 01111 22223333333
Q ss_pred hchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCch
Q 035493 205 VGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRP 264 (305)
Q Consensus 205 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~ 264 (305)
...+....|.|.++++ .|+++ .+++.......+.+++++++.+++.||+++++
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~-------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4456777888999987 48888 78888888899999999999999999996543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=152.80 Aligned_cols=205 Identities=23% Similarity=0.206 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAW--------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLS 128 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 128 (305)
++..+.++..++..+++++++++ .+++.|+++|++.+...+....++.|++|+|+|++..+....+..+|..
T Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 146 (394)
T TIGR00883 67 TLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLL 146 (394)
T ss_pred HHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHH
Confidence 77788889999999999999875 4788999999999999999999999999999999999999999999998
Q ss_pred HHHHhh------------hhhhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHH---H
Q 035493 129 VIYLVG------------TVVSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADI---R 193 (305)
Q Consensus 129 ~~~~i~------------~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 193 (305)
+++.+. ...+||+.|++.++..++........||+|++..++.+ .++.+.+..+..++. .
T Consensus 147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 221 (394)
T TIGR00883 147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-----HKKKRGPIRETLTKHRKPF 221 (394)
T ss_pred HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-----cccccCCHHHHHHhchHHH
Confidence 888764 23489999998877766666555667887764322111 011111111111111 1
Q ss_pred HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 194 VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
+......+...........+.|.+.++ .|.++ .+.+.......+...++.++.+++.||+|||+.+.....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSA-------NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 222223333333455566778888854 68888 7888888888999999999999999999999977654433
Q ss_pred H
Q 035493 273 T 273 (305)
Q Consensus 273 ~ 273 (305)
.
T Consensus 295 ~ 295 (394)
T TIGR00883 295 A 295 (394)
T ss_pred H
Confidence 3
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=166.80 Aligned_cols=255 Identities=12% Similarity=0.087 Sum_probs=176.5
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA 73 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~ 73 (305)
...+..+......+..++.++.++++|+++.++.|++.+ .+.++.+++++++++.+
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence 334455666667788899999999999999999887766 66677788888888777
Q ss_pred hhc---------------------------------------------------chhHHHHHHHHHhhcccchhhhhhhh
Q 035493 74 FSK---------------------------------------------------DAWSLYLGRCSLGIGLELMTYVIPIY 102 (305)
Q Consensus 74 ~~~---------------------------------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~ 102 (305)
+.+ .+..++++|+++|+|.+..++...++
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 652 24567899999999999999999999
Q ss_pred hhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhHHHHHHHHHH
Q 035493 103 IAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV--------------------------SWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 103 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~--------------------------~wr~~~~~~~~~~~~~~~~ 156 (305)
+.|++|+++|+++.++......+|..++++++..+ +||..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876321 2777888888877776655
Q ss_pred hhcccCC-hHHHH--H-HHHH--HHHHhhCCC-cc----hh---hhHHHH-----HHHHHHHHHhhhhchhHHHHhHHHH
Q 035493 157 LFFIPES-PRWLK--K-SLKL--LYSALRGKT-AD----IS---MESADI-----RVGVGLMVMQPLVGSAAIACYASYI 217 (305)
Q Consensus 157 ~~~~~es-~~~~~--~-~~~~--~~~~~~~~~-~~----~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (305)
++++||+ |+... + +.++ ..++.+++. .+ .+ +..++. .+...+..+......+.+..|.|.+
T Consensus 277 l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~y 356 (633)
T TIGR00805 277 FFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKY 356 (633)
T ss_pred HHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555553 22110 0 0000 000000000 00 00 001110 0334444444555677888899999
Q ss_pred HHH-hcccccccCCcchhHHHHHHHHHH-HHHHHHHHHHHhhcccCC--chhhhhHhHHHHHHHHH
Q 035493 218 FAA-AELMNIQGNDSMNLLFVTDLLTAI-IQLPAIVASVLLTDKSGR--RPLLLASDIGTCLSLSI 279 (305)
Q Consensus 218 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~g~--r~~~~~~~~~~~~~~~~ 279 (305)
+++ .|+++ .+++.......+ +.+++.+++|+++||+++ |+.+..+.....++.+.
T Consensus 357 l~~~~g~s~-------~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 357 LENQYGISS-------AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHcCCcH-------HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 987 58988 888877776665 568999999999999984 45566665555555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=151.72 Aligned_cols=236 Identities=19% Similarity=0.090 Sum_probs=154.8
Q ss_pred hhhhcccccccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHH---H--
Q 035493 24 VAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAI---A-- 73 (305)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~---~-- 73 (305)
+......+...|.+|. +++|+|.|.++.|++.+ .+..+.+...++.+.. .
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333355667788885 67899999999998877 6666655555544322 1
Q ss_pred ---hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHh
Q 035493 74 ---FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIA 146 (305)
Q Consensus 74 ---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~ 146 (305)
..++++.+++.|+++|++.+...+...+++.|+.|+|+|+++++..+.+...|..++|.++ ...|||..+.+.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 1357889999999999999998998999999999999999999999988888888887776 345899887766
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhccccc
Q 035493 147 AVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNI 226 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (305)
.+..++........||+++. ++ ++.+.++..+..+ ..................+.|.++++.+.++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 250 (392)
T PRK12382 185 MVLPLLAWAFNGTVRKVPAH---AG---------ERPSLWSVVGLIW-KPGLGLALQGVGFAVIGTFVSLYFASKGWAM- 250 (392)
T ss_pred HHHHHHHHHHHHhccCCCCC---cc---------cCchHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHHHHhcCCch-
Confidence 55544433333334443221 00 0000111111110 1111111112223445566677777766543
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 227 QGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.+.......++.+++++..+++.||+|+|+.+..+..+..++...+.
T Consensus 251 --------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 251 --------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 33445567778889999999999999999998887776666655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=149.59 Aligned_cols=237 Identities=13% Similarity=0.090 Sum_probs=159.4
Q ss_pred hhhhhcccccccchhhh-hhhhhcCCchhHHHHHH------------------------H-HHHHHHHHHHHHHHHHhhc
Q 035493 23 SVAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------A-MWLSDLFCIFGWLAIAFSK 76 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~-l~~~~~~~~~~~~~~~~~~ 76 (305)
.+..++..+...|.+|. +++++|.|+++.|++.+ . +..+.....++..++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666777888876 57899999999998776 3 4445666667778888999
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhH--HhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAF--TAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPC 150 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~ 150 (305)
|++.+++.|++.|.+.+...|...++..|+.|+++|++. .+....+.++|..+++.++ +..+||+.|++.++..
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988888888888888999887777654 5666666777777777766 4458999999988876
Q ss_pred HHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccc
Q 035493 151 LLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQ 227 (305)
Q Consensus 151 ~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 227 (305)
++..+. .+++||+|+...++.+ +.+.++..++.+ +......+...........+.|.++++ .|.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-- 234 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPRGAPGALT---------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPD-- 234 (375)
T ss_pred HHHHHHHHHhCCCcccCcccccC---------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCH--
Confidence 666544 4558887653211100 000000010100 111122222222223334455666654 68887
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHH
Q 035493 228 GNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCL 275 (305)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~ 275 (305)
.+.+...........++.++.+++.||++||+.+..+.....+
T Consensus 235 -----~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 277 (375)
T TIGR00899 235 -----KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA 277 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence 7777777777777888889999999999999988776554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=149.61 Aligned_cols=240 Identities=18% Similarity=0.136 Sum_probs=160.4
Q ss_pred Hhhhhhhhcccccccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHh
Q 035493 20 ICGSVAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAF 74 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~ 74 (305)
.+..+....+.++..+.+|. +++++|.|+++.+++.+ ++..+.++..++.+.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLL 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 33444555566778888886 67899999999998877 777777777776665544
Q ss_pred h---c-----chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHH
Q 035493 75 S---K-----DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRAL 142 (305)
Q Consensus 75 ~---~-----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~ 142 (305)
+ + +++.+++.|+++|++.+...+....++.|+.|+|+|+++.++...+...|..+++.++ ...|||..
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 180 (399)
T PRK05122 101 AGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGL 180 (399)
T ss_pred hhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHH
Confidence 3 2 5678899999999999999999999999999999999999998888777777776665 45599999
Q ss_pred HHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhc
Q 035493 143 ALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAE 222 (305)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (305)
+++..+..++........||+++. ++.++ +..+..++. +..................+.+.++++.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (399)
T PRK05122 181 GLLIMLLALLGLLLARPRPAVPPV--KGERL----------PFRRVLGRV-WPYGMGLALASIGFGTIATFITLYYAARG 247 (399)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC--Cccch----------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888766655544443334443210 00000 011111111 11111111112223445566677776665
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 223 LMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.+. .+.......++.+++++..+++.||+++|+.+..+.....++...+.
T Consensus 248 ~~~---------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T PRK05122 248 WDG---------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW 297 (399)
T ss_pred ccc---------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 532 23455677788899999999999999999988877766666554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=148.12 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=161.9
Q ss_pred ccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 035493 31 GYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRC 86 (305)
Q Consensus 31 ~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 86 (305)
...++.+|.+++|+|+|.++.+++.+ ++..+.....++...+ .+++++.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 56789999999999999999998877 6677777777777776 7789999999999
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----h--hhHHHHHHhHHHHHHHHHHhhcc
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----V--SWRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~--~wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
+.|++.+...+.....+.|++| ++|+++.+..+.+.++|..+++.+... . +||+.|...++..++... .++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 9999999988888888899886 579999999999888888887766532 2 399998876655443322 233
Q ss_pred cCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHH
Q 035493 161 PESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTD 239 (305)
Q Consensus 161 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 239 (305)
||.++. + ++ ++ +.++....+..++.. +......+......+....|.|.++++.|.+. .+.+...
T Consensus 173 ~~~~~~---~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~-------~~~g~~~ 238 (355)
T TIGR00896 173 PQVRRR---V-AA--NQ-TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASA-------ATAGSLL 238 (355)
T ss_pred hhhccc---c-CC--CC-CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHH
Confidence 443220 0 00 00 000001111111111 22223333333345566778899998888888 8888999
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CchhhhhHhHHHHHHHHHH
Q 035493 240 LLTAIIQLPAIVASVLLTDKSG-RRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~d~~g-~r~~~~~~~~~~~~~~~~~ 280 (305)
....++.++++++.+++.||++ ||+....+..+..++...+
T Consensus 239 ~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T TIGR00896 239 ALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL 280 (355)
T ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999994 5555556555555554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=146.91 Aligned_cols=250 Identities=17% Similarity=0.096 Sum_probs=158.5
Q ss_pred HhhhhhhhcccccccchhhhhhhhhcCCchhH-----HHHHH------------------------HHHHHHHHHHHHHH
Q 035493 20 ICGSVAYGCSVGYSSPVEAGITADLGLSLIEY-----SVFGS------------------------AMWLSDLFCIFGWL 70 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~s------------------------~l~~~~~~~~~~~~ 70 (305)
.++.+..+.......+.+|.+.+++|++..+. +++.+ .+..+..+..++..
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 34455566666778889999999999886553 44333 66777788888888
Q ss_pred HHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHh
Q 035493 71 AIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIA 146 (305)
Q Consensus 71 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~ 146 (305)
+..++++++.+++.|++.|++.+ ..+....++.|+.|+++|+++.+.......+|..+++.++. ..+||+.|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88889999999999999999854 56777888999999999999999999888888888887764 45899999988
Q ss_pred HHHHHHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccc
Q 035493 147 AVPCLLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMN 225 (305)
Q Consensus 147 ~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (305)
++..++..+. .++.||+++...++.++..++..+...+. +.........+...........+.+.+..+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNP-----KLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNV 253 (408)
T ss_pred HHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8776665543 35566653211111111111100000000 00011111111111122233344555655543222
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 226 IQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
. ......+......+++..++.+..+++.||++||+.+..+.....++.+
T Consensus 254 ~---~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 254 S---NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI 303 (408)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 0 0001233445566778888888999999999999988877665554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-24 Score=188.43 Aligned_cols=254 Identities=31% Similarity=0.540 Sum_probs=186.9
Q ss_pred HHhhhhhhhcccccccchhhhhh--hhhcCCc---------hhHHHHHH------------------------HHHHHHH
Q 035493 19 AICGSVAYGCSVGYSSPVEAGIT--ADLGLSL---------IEYSVFGS------------------------AMWLSDL 63 (305)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~---------~~~~~~~s------------------------~l~~~~~ 63 (305)
+.++.+.+|+|....+...+... .+++.+. .+.++..+ .+..+..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 45566888888888877766544 2222222 12344433 8888999
Q ss_pred HHHHHHHHHHhhc---chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---
Q 035493 64 FCIFGWLAIAFSK---DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV--- 137 (305)
Q Consensus 64 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~--- 137 (305)
+..+++++.++++ |++.+.++|+++|++.|+..+....++.|..|+|+|++..++.+.+..+|..++..++...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999988887776322
Q ss_pred -h---hHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCCCc---chh-------hh----------
Q 035493 138 -S---WRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGKTA---DIS-------ME---------- 188 (305)
Q Consensus 138 -~---wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~~~---~~~-------~~---------- 188 (305)
+ ||..+.+.++++++..+...++||||+|+.. |+++..++.++++. +.+ +.
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL 244 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence 4 9999999999988888788899999999865 33333333221110 000 00
Q ss_pred HHH------HHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 189 SAD------IRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 189 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
.++ ......+..+....+.+...+|.+.++++.+.++ . ........+...++.+++..+.||+||
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~GR 315 (451)
T PF00083_consen 245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISN-------S--FLATLILGLVNFLGTLLAIFLIDRFGR 315 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------c--ccccccccccccccccccccccccccc
Confidence 000 0033334444445566677788888888877776 4 344456667778888888899999999
Q ss_pred chhhhhHhHHHHHHHHHHH
Q 035493 263 RPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 263 r~~~~~~~~~~~~~~~~~~ 281 (305)
|+.++.+...+.++.+.++
T Consensus 316 r~~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 316 RKLLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccccccccccccc
Confidence 9999999888877777665
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=147.34 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=166.6
Q ss_pred ccccccchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHHHHHHHHHHhh---cc
Q 035493 29 SVGYSSPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFCIFGWLAIAFS---KD 77 (305)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~~~~~~~~~~~---~~ 77 (305)
.....++..|.+.+|+|+|.++.++... .++.+....++.....++. .+
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred CchhHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 4456778889999999999999987763 2456666666666666666 45
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhh--------hHHHHHH
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVS--------WRALALI 145 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~--------wr~~~~~ 145 (305)
.+.+...+++.|.+.+...+...+++.|++|+|+|+++.++...+..+|.++++.++ ...+ ||..|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 666777788888888888999999999999999999999999999999999988887 3446 9999999
Q ss_pred hHHHHHHHHHHhh-cccCChHHHHHH--HHH----HHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHH
Q 035493 146 AAVPCLLQVVGLF-FIPESPRWLKKS--LKL----LYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIF 218 (305)
Q Consensus 146 ~~~~~~~~~~~~~-~~~es~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
.++..++..+..+ ..||+++...++ .++ ..++..+++ ..+. .+......+...........+.|.+.
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRK-----NMIQ-ALLLLLLIVLYKLGDSAATVLTTLFL 236 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhc-----CchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766655544 356653211001 000 111111000 0000 12222233333344555667778888
Q ss_pred HHhcccccccCCcchhHHHHHHHHH-HHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 219 AAAELMNIQGNDSMNLLFVTDLLTA-IIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
++.|+++ ++.+......+ +..+++.++++++.||+|||+.+..+..+..+....+.
T Consensus 237 ~~~g~~~-------~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 293 (356)
T TIGR00901 237 LDMGFSK-------EEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV 293 (356)
T ss_pred HHcCCCH-------HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 77777666655 57789999999999999999998887777666555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-18 Score=146.20 Aligned_cols=220 Identities=13% Similarity=0.077 Sum_probs=157.1
Q ss_pred hcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHH
Q 035493 27 GCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLY 82 (305)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~ 82 (305)
.+......|..|.+.+++|.|+++.+++.+ .+..+..+..++.....++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 345556778899999999999999998776 77788888889988889999999999
Q ss_pred HHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHH-Hh
Q 035493 83 LGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVV-GL 157 (305)
Q Consensus 83 ~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~-~~ 157 (305)
+.|++.|++.+...+....+..|.+++++|+++.+....+..+|..++|.++. ..+||+.|++.++..++..+ ..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888889999999999999999998888888888777763 45899999998776655543 34
Q ss_pred hcccCChHHHHHHH--HHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchh
Q 035493 158 FFIPESPRWLKKSL--KLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNL 234 (305)
Q Consensus 158 ~~~~es~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 234 (305)
++.||+++...++. ++..++..+++ +. +......+....+......+.+.++++ .|.++ .+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~ 244 (394)
T PRK11652 181 RWMPETRPADARRTRVLASYRTLLSNR--------RF-NCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSS-------MT 244 (394)
T ss_pred HhCCccCccccchhHHHHHHHHHHcCh--------HH-HHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCH-------HH
Confidence 56788654211111 11111111100 00 111222222222333444455666666 68887 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 235 LFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
.+.......++.+++..+.+++.||.++
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 245 VSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778888888888888888873
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-18 Score=143.50 Aligned_cols=226 Identities=27% Similarity=0.302 Sum_probs=185.9
Q ss_pred HhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh
Q 035493 20 ICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS 75 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~ 75 (305)
.+..+....+.....+..|.+.+++|.++++.+++.+ .+..+..+..++.....++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~ 84 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence 4455666777788889999999999999999987766 7888888899999999999
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALIAAVPCL 151 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~~~~~~~ 151 (305)
++++.+.+.|++.|++.+...+...+++.|++|+|+|++..++......+|..+++.++..+ +||+.+++.++..+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887443 79999999888777
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHh-cccccccCC
Q 035493 152 LQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAA-ELMNIQGND 230 (305)
Q Consensus 152 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 230 (305)
+..+...+.+ |+ .+......+...........+.|.+.++. +.++
T Consensus 165 ~~~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 210 (352)
T cd06174 165 LLALLLLFLL--RL---------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA----- 210 (352)
T ss_pred HHHHHHHHHH--HH---------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH-----
Confidence 6665544433 00 03334444445555677777888888876 8888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhhhHhHHHHHHHHHHH
Q 035493 231 SMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRP-LLLASDIGTCLSLSIIA 281 (305)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~-~~~~~~~~~~~~~~~~~ 281 (305)
.+.+.......++..++.++.+++.||++||+ .+..+.....++...+.
T Consensus 211 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 211 --AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999 88888777776666554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=148.35 Aligned_cols=225 Identities=13% Similarity=0.027 Sum_probs=148.0
Q ss_pred ccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH---h-hcchhHHHHH
Q 035493 33 SSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA---F-SKDAWSLYLG 84 (305)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~ 84 (305)
..+..|.+.+|+|.++++.+++.+ ++..+..+..++..++. . .++++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 334556667889999999998776 67777777777766542 3 3578888999
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHH-HHHHHhhh----hhhhHHHHHHhHHHHHHHH-HHhh
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGL-SVIYLVGT----VVSWRALALIAAVPCLLQV-VGLF 158 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~i~~----~~~wr~~~~~~~~~~~~~~-~~~~ 158 (305)
|++.|++.+...+.....+.|++|+|+|++++++.+.+.++|. .+++.++. ..||+..++.......+.. +..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888889999999999999999999999886 56777653 3475554443332222222 2223
Q ss_pred cccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHH
Q 035493 159 FIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFV 237 (305)
Q Consensus 159 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 237 (305)
..+|.++...+++++..++.+ ++.+...++.+ +......+......+...+|.|.+.++.|++. .+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~-------~~~~~ 261 (402)
T TIGR00897 192 SNKDIFTPQHMQTREKFSELG---KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFST-------SEWLQ 261 (402)
T ss_pred ccCCCCCcccccCCcchhhHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-------hHHHH
Confidence 334331100000000000000 00000111111 23333334444556677888999998889888 77778
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 035493 238 TDLLTAIIQLPAIVASVLLTDKSGRRPLLL 267 (305)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~ 267 (305)
......++..++++..|++.||++||+...
T Consensus 262 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 262 IWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 888888999999999999999999988763
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=149.30 Aligned_cols=242 Identities=13% Similarity=-0.025 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHH
Q 035493 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCI 66 (305)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~ 66 (305)
++|.+...+.+.......+....+...|.+.+++|++.++.+++.+ +++.+.++..
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 3454444444444332233455677889999999999999987766 7778888888
Q ss_pred HHHHHHHhhcchhHHHH-HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHH
Q 035493 67 FGWLAIAFSKDAWSLYL-GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRA 141 (305)
Q Consensus 67 ~~~~~~~~~~~~~~l~~-~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~ 141 (305)
++++.++++++++.+++ .|+++|++.+...+....++.|+++ ++|+++.++.+.+..+|..++|.+. ...|||+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~ 174 (455)
T TIGR00892 96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG 174 (455)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence 99999999999998865 5799999998877777888899996 7899999999999888888877765 3449999
Q ss_pred HHHHhHHHHHHHHHHhhc-ccCChHHH--HHHHHHHHHHh-hC-C------Ccchh-----hhHHHHH-HHHHHHHHhhh
Q 035493 142 LALIAAVPCLLQVVGLFF-IPESPRWL--KKSLKLLYSAL-RG-K------TADIS-----MESADIR-VGVGLMVMQPL 204 (305)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-~~es~~~~--~~~~~~~~~~~-~~-~------~~~~~-----~~~~~~~-~~~~~~~~~~~ 204 (305)
.|++.++..++..+..++ .++.++.. ..+.++..++. .. + ..+.. +..++.. +......+...
T Consensus 175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (455)
T TIGR00892 175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMF 254 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHH
Confidence 999988876655443333 33222100 00000000000 00 0 00000 0011111 22222233333
Q ss_pred hchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035493 205 VGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS 260 (305)
Q Consensus 205 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 260 (305)
........+.|.+.++.|++. .+++......+++.++++++.+++.||.
T Consensus 255 ~~~~~~~~~l~~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 255 LGFFAPIIFLVPYAKDKGVDE-------YEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHccchHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334455667788888888888 8888999999999999999999999973
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=148.11 Aligned_cols=243 Identities=12% Similarity=0.099 Sum_probs=168.9
Q ss_pred HHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHHHHHHH
Q 035493 19 AICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFCIFGWL 70 (305)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~~~~~~ 70 (305)
..+..+..|.+.....+.+|...++.|.+.++++.... .+..+.+...++..
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~ 96 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence 34445566777778888999999999999999987533 35566666666666
Q ss_pred HHHhh---cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----h-hhhhHHH
Q 035493 71 AIAFS---KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----T-VVSWRAL 142 (305)
Q Consensus 71 ~~~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~-~~~wr~~ 142 (305)
..++. ++++.+.+.|++.|++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+. . ..|||..
T Consensus 97 ~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~ 176 (491)
T PRK11010 97 AMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM 176 (491)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 66665 46888999999999999999999999999999999999999999999999988887655 4 4599999
Q ss_pred HHHhHHHHHHHHHHhhcccCChHHHHHHH--H----HHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHH
Q 035493 143 ALIAAVPCLLQVVGLFFIPESPRWLKKSL--K----LLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASY 216 (305)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~es~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (305)
|++.++..++..+..++.||+++...+++ + +..++..+++ +. +......+...........+.+.
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~-~~~ll~~~l~~~~~~~~~~~~~~ 247 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRN--------NA-WLILLLIVLYKLGDAFAMSLTTT 247 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCc--------CH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877776666556788654211100 0 0011111000 00 11222222222223333445555
Q ss_pred HH-HHhcccccccCCcchhHHHHHH-HHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHH
Q 035493 217 IF-AAAELMNIQGNDSMNLLFVTDL-LTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSL 277 (305)
Q Consensus 217 ~~-~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~ 277 (305)
++ ++.|++. .+.+.... ...++.+++.+++|++.||+++|+.+..+..+..+..
T Consensus 248 ~l~~~~G~s~-------~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 248 FLIRGVGFDA-------GEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55 4579988 88888764 5567999999999999999999988776655544443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=145.95 Aligned_cols=236 Identities=14% Similarity=0.074 Sum_probs=152.3
Q ss_pred hhhhhcccccccchhhh-hhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhc
Q 035493 23 SVAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSK 76 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~ 76 (305)
.+..+.......|..|. +++|+|+|+++.|++.+ .+..+.+...++..+.++++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455556676665 67899999999998754 34555666667777788899
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcch--hhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVR--GAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPC 150 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~ 150 (305)
+++.+++.+.+.|...+...|....+..|+.++++| +...+..+.+.++|.+++|.++ ..+|||..|+..++..
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~ 183 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAF 183 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 999877665554444467788888888888876655 3455777778888888888777 4459999999988776
Q ss_pred HHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hccccccc
Q 035493 151 LLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQG 228 (305)
Q Consensus 151 ~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 228 (305)
++..+. ..++||+++..++++ + +.+ ..+++.++........ ............+.|.++++ .|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~--- 251 (393)
T PRK15011 184 IVCGVMVWLFLPSMRKELPLAT-G---TLE----APRRNRRDTLLLFVIC-TLMWGTNSLYIINMPLFIINELHLPE--- 251 (393)
T ss_pred HHHHHHHHhhcCccCCCCcccc-c---ccc----ccccccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCH---
Confidence 666544 456787653211100 0 000 0000001111111111 21222233445567877765 58887
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 229 NDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
.+.+.......+..+++.++.|+++||++||+....+.....
T Consensus 252 ----~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~ 293 (393)
T PRK15011 252 ----KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGV 293 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 777777777777888899999999999999997766544433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=151.30 Aligned_cols=243 Identities=13% Similarity=0.041 Sum_probs=161.9
Q ss_pred hhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH-----hhc
Q 035493 26 YGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA-----FSK 76 (305)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~-----~~~ 76 (305)
..+......+..|.+.++++.++.+.|++.+ .+..+..+..++....+ ..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T PRK10489 29 SIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP 108 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence 3334556677888898999989999887777 23333334444433322 256
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLL 152 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~ 152 (305)
+++.+++.|++.|++.+...+...+.+.|+.|+++|+++.++......+|..+++.++.. .+||+.|++.++..++
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~ 188 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFI 188 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788999999999999888888889999999999999999999998888888888887743 4899999988777766
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCC
Q 035493 153 QVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGND 230 (305)
Q Consensus 153 ~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 230 (305)
..+..+.+||+++...+ .++..++.++ ..+...++.. .......+... .......+.|.+.++ .|.++
T Consensus 189 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~----- 258 (417)
T PRK10489 189 TLLPLLRLPALPPPPQP-REHPLRSLLA---GFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGA----- 258 (417)
T ss_pred HHHHHHhCCCCCCCCcc-cccchHHHHH---HHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCCh-----
Confidence 66666667775432110 0000000000 0000000001 11111111111 133455677888888 68888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 231 SMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
.+.+.......++.+++.++.+++.||.++++.+..+.....++.+.+
T Consensus 259 --~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 259 --AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred --hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence 788888888999999999999999999777777777666555554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=143.99 Aligned_cols=236 Identities=13% Similarity=0.016 Sum_probs=157.5
Q ss_pred hhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc
Q 035493 21 CGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK 76 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~ 76 (305)
++.+...+.........+.+.+|+|.+..+.+++.+ ++..+..+..++++.+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 334444443334455556677899999988887776 88888888888888877776
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVPCLLQ 153 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~~~~~ 153 (305)
+. ++.|+++|++.+...|...+++.|++|+|+|+++.++.+.....|..++|.++..+ .|+..+.+.+...++.
T Consensus 90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 78899999999999999999999999999999999999999999999999888544 4666666555444444
Q ss_pred HHHhhcccCChHHHHH---HHHHHHHHhhCCCcchhhhHHHH--HHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccc
Q 035493 154 VVGLFFIPESPRWLKK---SLKLLYSALRGKTADISMESADI--RVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQ 227 (305)
Q Consensus 154 ~~~~~~~~es~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 227 (305)
.+....+||+|+...+ +.++..++.++. .+...++. +.......+. ........+..|.+.++ .|.++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~s~-- 240 (393)
T PRK11195 167 ALFNLFIPRLGARRPGQSWNPIALLRDFFHA---CRVLWRDKLGRFSLAGTTLF-WGAGATLRFLVLAWAPVALGITL-- 240 (393)
T ss_pred HHHHhcCCCCcccccccCCCHHHHHHHHHHH---HHHHHhCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCh--
Confidence 4455667876532111 000001111000 00000111 1111111111 11223334444556655 58888
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHh
Q 035493 228 GNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASD 270 (305)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~ 270 (305)
.+.+......+++.+++++..+++.||.++|+....+.
T Consensus 241 -----~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 241 -----NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 88999999999999999999999999998888776653
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=135.33 Aligned_cols=273 Identities=16% Similarity=0.105 Sum_probs=192.2
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHH
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDL 63 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~ 63 (305)
..+.++...+....+++.+........-+.|...+.+|.+..|.+++.. .......
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 4567777788888888888877777777888888888988877776655 5556666
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhh
Q 035493 64 FCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSW 139 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~w 139 (305)
...+...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++ ..+||
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 7777788889999999999999999999999 999999999999999998877666 88888888887776 45599
Q ss_pred HHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCCCc---c-------h--hh---------------
Q 035493 140 RALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGKTA---D-------I--SM--------------- 187 (305)
Q Consensus 140 r~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~~~---~-------~--~~--------------- 187 (305)
||.......+..+.....+++|||||++.. ++.+.++++...+. . . ++
T Consensus 230 r~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ 309 (528)
T KOG0253|consen 230 RYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAA 309 (528)
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccc
Confidence 999999888877777888899999998754 33333333221110 0 0 00
Q ss_pred -------------hHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhc---cccc--------cc--CCcchhHHHHHHH
Q 035493 188 -------------ESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAE---LMNI--------QG--NDSMNLLFVTDLL 241 (305)
Q Consensus 188 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~--------~~--~~~~~~~~~~~~~ 241 (305)
+.++.....+..++.+...+++.......+++... .... .. ......-+.-..+
T Consensus 310 ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli 389 (528)
T KOG0253|consen 310 KEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI 389 (528)
T ss_pred cccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence 00111134444444433334444444444443311 1100 00 1122444566778
Q ss_pred HHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 242 TAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 242 ~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
..+...+|.++.++++||+|||+.+..+++++++..+.+..
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~ 430 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT 430 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998888777666543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-17 Score=139.06 Aligned_cols=234 Identities=14% Similarity=0.129 Sum_probs=154.8
Q ss_pred ccccchhh-hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 035493 31 GYSSPVEA-GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGR 85 (305)
Q Consensus 31 ~~~~~~~~-~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 85 (305)
....|..| .+++++|+|..+.|++.+ ++..+..+..++.+.+.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33455544 467899999999987766 88889999999999999999999999999
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHHH-hhccc
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVPCLLQVVG-LFFIP 161 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~~~~~~~~-~~~~~ 161 (305)
+++|++.+...+...+++.|++|+++|+++.++......+|..++|.++..+ +||+.|++.++..++..+. .++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888899999999999999999999999999999988888877544 9999999887776655433 34456
Q ss_pred CChHHH-HHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHH
Q 035493 162 ESPRWL-KKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDL 240 (305)
Q Consensus 162 es~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (305)
|.+... .++.++..++..+++ + .+......+...........+.|.+.++.+.++ .+.+....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------~~~g~l~~ 250 (400)
T PRK11646 187 AYKLSTVRTPVREGMTRVLRDK--------R-FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSP-------SAVKWMYA 250 (400)
T ss_pred cccccccchhhHHHHHHHHcCc--------h-HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCc-------hHHHHHHH
Confidence 532100 001111111111110 0 011111212111112233456788888866566 66667666
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCCchhhhhHhHHHHHHHHHH
Q 035493 241 LTAIIQLPAIVASVLLTD-KSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 241 ~~~~~~~~~~~~~~~l~d-~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
..++....+....++..| |.+.++.+..+..+.+++...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l 291 (400)
T PRK11646 251 IEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 666666655555555554 5666666666655555554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=142.13 Aligned_cols=247 Identities=14% Similarity=0.059 Sum_probs=163.8
Q ss_pred hhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHH-HHHHHh
Q 035493 21 CGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFG-WLAIAF 74 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~-~~~~~~ 74 (305)
+..+......+...|.+|.+.+|+|.|.+++|++.+ ..........+. ...+..
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455677889999999999999999998866 000111111111 123446
Q ss_pred hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHH
Q 035493 75 SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPC 150 (305)
Q Consensus 75 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~ 150 (305)
+++++.+++.|.++|.+.+...|...++..|+ +|+|++..+......++|.+++|.++ +.+|||..|++.+...
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 78999999999999999888889888887665 46788899999888888888888876 4459999998876553
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccC
Q 035493 151 LLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGN 229 (305)
Q Consensus 151 ~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (305)
++........|+.++...++ ++ + +++..+..+..++.+ +......+...........+.|.++++.|.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~---- 239 (382)
T TIGR00902 169 AFMLIGFLIKPTIPPKDAIP-ED---E-SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISA---- 239 (382)
T ss_pred HHHHHHHHcCCCCCCCcccc-cc---c-cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----
Confidence 33333333333322210000 00 0 000001111111111 23333333334445666667788888889998
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 230 DSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.+.+.......+..+++....+++.||+|+|+.+..+.....+....++
T Consensus 240 ---~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 240 ---SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999988888877766554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=128.36 Aligned_cols=251 Identities=18% Similarity=0.177 Sum_probs=190.3
Q ss_pred HHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHH
Q 035493 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFG 68 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~ 68 (305)
+.....+.+..+...-..+.++|+++++++|+|+|.++.|++++ .+..++++..+|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444455555666667788999999999999999999999888 788889999999
Q ss_pred HHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhh-hhHHHH
Q 035493 69 WLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVV-SWRALA 143 (305)
Q Consensus 69 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~-~wr~~~ 143 (305)
..+.... +...++.+-.+.|.|.+......++.+.|.+|+| -+..++++....+.|..+++.+. +.. +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9988877 7788889999999999999999999999999865 69999999999888777776555 444 799999
Q ss_pred HHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHH-HHHHHHHHHhhhhchhHHHHhHHHHHHHhc
Q 035493 144 LIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADI-RVGVGLMVMQPLVGSAAIACYASYIFAAAE 222 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (305)
.+.+.++++.++.++.-. .|.. ..+.+.+..+..+.+++. .+...+.+..+...+|....|+|.++.|.|
T Consensus 169 ~~WAl~allAl~~WlPq~--~r~~-------~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G 239 (395)
T COG2807 169 GFWALLALLALLIWLPQA--LREQ-------AASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG 239 (395)
T ss_pred HHHHHHHHHHHHHHhhhc--cccc-------ccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 999999888877765321 1110 000011100111111111 166667777777788999999999999999
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc-CCchhhhhHhHHHHHHHHHHH
Q 035493 223 LMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS-GRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~r~~~~~~~~~~~~~~~~~~ 281 (305)
+|. ++++...+...+.+++.++....+.+|. ++|+........+.++...+.
T Consensus 240 ~sa-------~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~ 292 (395)
T COG2807 240 LSA-------AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL 292 (395)
T ss_pred CCH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999975 455555555555555554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-16 Score=134.57 Aligned_cols=245 Identities=16% Similarity=0.106 Sum_probs=162.7
Q ss_pred hhhhhcccccccchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHHHHHHHHHHh
Q 035493 23 SVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFCIFGWLAIAF 74 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~~~~~~~~~~ 74 (305)
.+..|+..+.....+|.+-++.|+|.+|+|++.. .+..+..+.+++....++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 4556677777888899988889999999997765 466667777666666666
Q ss_pred h---cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----h-hhhhHHHHHHh
Q 035493 75 S---KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----T-VVSWRALALIA 146 (305)
Q Consensus 75 ~---~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~-~~~wr~~~~~~ 146 (305)
. ++++.+.+..++.++..+...+...+++.|+.|+|+|+++.++...+..+|..+++.+. . ..|||..|++.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~ 167 (402)
T PRK11902 88 CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLM 167 (402)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHH
Confidence 6 35777888888888888899999999999999999999999999999999988887755 3 24899999998
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhH-HHHhHHHHHHHhccc
Q 035493 147 AVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAA-IACYASYIFAAAELM 224 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 224 (305)
++..++..+..++.||+++...++ ++..++.++ +..+..++.. +......+........ .....+.+.++.|++
T Consensus 168 a~~~l~~~l~~~~~~e~~~~~~~~-~~~~~~~~~---~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~ 243 (402)
T PRK11902 168 AGLMLAGALTTLWAPEPEVPARPP-RSLGEAVVG---PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFS 243 (402)
T ss_pred HHHHHHHHHHHHhcCCCccccccc-chhHHHHHH---HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 887766655556677765421110 000000000 0000011110 1122221221111111 122334444557888
Q ss_pred ccccCCcchhHHHHHHHHH-HHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 225 NIQGNDSMNLLFVTDLLTA-IIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
+ ++.+......+ ++.+++.++++++.||+++|+.+..+.....+..+
T Consensus 244 ~-------~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 244 A-------GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred H-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8 77777765544 46889999999999999999987766655544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=137.30 Aligned_cols=237 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred ccccccchhh-hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHH
Q 035493 29 SVGYSSPVEA-GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYL 83 (305)
Q Consensus 29 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (305)
..+...+..| .+++++|+|.++.|++.+ ++..+.+...++.+...++++++.+++
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVL 101 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444555554 567889999999998777 777888888888888899999999999
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHHHh-hc
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVPCLLQVVGL-FF 159 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~~~~~~~~~-~~ 159 (305)
.|.+.|.+.+...+....+..|..|+++|+++.++.....++|..++|.++..+ +||..|++.++..++..+.. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~ 181 (395)
T PRK10054 102 FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIW 181 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888999999999999999999999999999999998888554 89999998887766654433 44
Q ss_pred ccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH---hcccccccCCcchhH
Q 035493 160 IPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA---AELMNIQGNDSMNLL 235 (305)
Q Consensus 160 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ 235 (305)
+||+++..++++++.. +. ++..++.+ +......+...........+.+.+... .+.+. ...
T Consensus 182 ~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 246 (395)
T PRK10054 182 VQRSEKAIATETGSVW-SP-------SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAE-------KVV 246 (395)
T ss_pred Hhccccccccchhhhh-hh-------hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHH-------HHH
Confidence 5554321111111000 00 00011111 122222221111122222333444432 34444 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 236 FVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
+.......+.........+++.||.++|+.+..+..+..++...+
T Consensus 247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (395)
T PRK10054 247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGF 291 (395)
T ss_pred HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 566666666667777788899999999998887776665555444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=140.81 Aligned_cols=217 Identities=20% Similarity=0.207 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
+++.+.++..++.+..++++|++.+++.|+++|++.++.......+++|+.++|+|+.+..+ ......+..+++..+.+
T Consensus 150 ~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~ 228 (521)
T KOG0255|consen 150 VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAY 228 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 55555555555555544
Q ss_pred h--hhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCC---CcchhhhH------HHHH-------
Q 035493 137 V--SWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGK---TADISMES------ADIR------- 193 (305)
Q Consensus 137 ~--~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~---~~~~~~~~------~~~~------- 193 (305)
+ +||+.+++..++..+.++.++..||||||+.. ++++..++..+. ..+..+.. ++.+
T Consensus 229 ~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (521)
T KOG0255|consen 229 ITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPK 308 (521)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCC
Confidence 4 89999999999988888777777899999876 334444443211 11110000 0000
Q ss_pred -------------HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035493 194 -------------VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS 260 (305)
Q Consensus 194 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 260 (305)
.......+.. ......+|.- .+...+++. +.+......+....++....+...|+.
T Consensus 309 ~~~~~l~~~~~l~~~~~~~~~~~--~~~~~~y~gl-~~~~~~lg~--------~~~~~~~~~~~~~~p~~~~~~~~~~~~ 377 (521)
T KOG0255|consen 309 ISFLDLFRTPRLRYRTLYLLFIW--FVFSLVYYGL-SLNVSGLGG--------NIYLNFTLSGLVELPAYFRNGLLLPEF 377 (521)
T ss_pred CchhhhhcCHHHHHHHHHHHHHH--HHHhHHHHhh-hhhhhhcCc--------hHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 1111111111 1122222221 111122222 344566666678888888889999999
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHHh
Q 035493 261 GRRPLLLASDIGTCLSLSIIALAFC 285 (305)
Q Consensus 261 g~r~~~~~~~~~~~~~~~~~~~~~~ 285 (305)
|||.....+.....++++..++...
T Consensus 378 gR~~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
T KOG0255|consen 378 GRRPPLFLSLFLAGIGLLLFGWLPD 402 (521)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888888876543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-18 Score=140.03 Aligned_cols=276 Identities=18% Similarity=0.096 Sum_probs=189.8
Q ss_pred chHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhh-cCC-------chhHHHH------HH-----------------
Q 035493 8 AIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADL-GLS-------LIEYSVF------GS----------------- 56 (305)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s-------~~~~~~~------~s----------------- 56 (305)
..|++...+.++..+.+.++||...++.+.|.+...| |-+ +...+.+ ++
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 4688888999999999999999999999999887654 222 1111111 11
Q ss_pred -HHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHH
Q 035493 57 -AMWLSDLFCIFGWLAIAFSK-------DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLS 128 (305)
Q Consensus 57 -~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 128 (305)
++...+++..++++.++++. -...+...|++.|+|.|+.+|...+..+|....++||...+...+..++|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 88888888888888777662 1467888999999999999999999999999999999999888777777777
Q ss_pred HHHHhhhhh-------------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHH---HHHHHHhhCCCcc--
Q 035493 129 VIYLVGTVV-------------------SWRALALIAAVPCLLQVVGLFFIPESPRWLKKSL---KLLYSALRGKTAD-- 184 (305)
Q Consensus 129 ~~~~i~~~~-------------------~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~---~~~~~~~~~~~~~-- 184 (305)
.|.+++..+ =||..+.+.+++++..+...+.+||++++..-.+ +...++.+++...
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~ 274 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDI 274 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccccc
Confidence 666555111 3999999999999999999999999999863211 1111111111000
Q ss_pred -------------------hhhhHH----HHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCc--chhHHHHH
Q 035493 185 -------------------ISMESA----DIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDS--MNLLFVTD 239 (305)
Q Consensus 185 -------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 239 (305)
..+... +........+|..-...+....+...+++..|+.+...+.. ...+-...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~ 354 (538)
T KOG0252|consen 275 EAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNL 354 (538)
T ss_pred chhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHH
Confidence 000000 01144455555555566666677777777777665222210 01112223
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 240 LLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
.+...+.++|..+...++|++|||+..+.++.++.+..+.++..
T Consensus 355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~ 398 (538)
T KOG0252|consen 355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP 398 (538)
T ss_pred HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC
Confidence 33344455677777889999999999999999998888777743
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=137.13 Aligned_cols=239 Identities=12% Similarity=0.016 Sum_probs=153.0
Q ss_pred cccccccchhhhhhhhhcCCchhHHHHHH----------------------H---HHHHHHHH-HHHHHHHHhhcchhHH
Q 035493 28 CSVGYSSPVEAGITADLGLSLIEYSVFGS----------------------A---MWLSDLFC-IFGWLAIAFSKDAWSL 81 (305)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s----------------------~---l~~~~~~~-~~~~~~~~~~~~~~~l 81 (305)
...+...|.+|.+.+|+|.|.++.|++.+ . ........ .........+++++.+
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLL 97 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 34566889999999999999999998877 0 01111111 1111223345889999
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHh
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~ 157 (305)
++.|++.|++.+...|...++..|+ +++|++..+.......+|..++|.++ ..+|||..|++.++..++..+..
T Consensus 98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~ 175 (382)
T PRK11128 98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ 175 (382)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888877776 34577777777777777777777776 44599999988776544444444
Q ss_pred hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHH
Q 035493 158 FFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLF 236 (305)
Q Consensus 158 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (305)
...||.++.. ++++ +.++...+..+..++.+ +......+...........+.|.+.++.|.++ .+.+
T Consensus 176 ~~~~~~~~~~--~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~-------~~~g 243 (382)
T PRK11128 176 LLRPTIMPQG--ESRQ---QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSA-------STIG 243 (382)
T ss_pred HccCCCCCcc--cccc---ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCH-------hHHH
Confidence 4456543210 0000 00000011111111111 22222222222334445566677778888888 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 237 VTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
.......+..++..++.+++.||+++|+.+..+....++..+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~ 287 (382)
T PRK11128 244 YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM 287 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999888877766655444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-16 Score=127.38 Aligned_cols=245 Identities=13% Similarity=0.012 Sum_probs=188.8
Q ss_pred HHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 035493 17 LVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAI 72 (305)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~ 72 (305)
..+..-.+..|+.....++..|++++.|+++..|.+++.. .++.+..++++|+.+.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444456788888888999999999999999999987665 8889999999999887
Q ss_pred H---hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh------------
Q 035493 73 A---FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV------------ 137 (305)
Q Consensus 73 ~---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~------------ 137 (305)
. -..++..++++-++.|.|.+...+.++.+++...|+++..+.+++.+.++++|.+++|+++..+
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 4 5578999999999999999999999999999999999899999999999999999999988433
Q ss_pred -----------hhHHHHHHhHHHHHHHHHHhh--cccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhh
Q 035493 138 -----------SWRALALIAAVPCLLQVVGLF--FIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQP 203 (305)
Q Consensus 138 -----------~wr~~~~~~~~~~~~~~~~~~--~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (305)
.||++|...+...++..+... ..||.+.-..+ +.+.++....+..++.+ +...+..+++
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~gvl~~FlY 248 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS-------LGASGSAGLSSLFQNKHLRLGVLAIFLY 248 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc-------ccccccchHHHHHhChHHHHHHHHHHHH
Confidence 378888887777666655443 34553321000 00111001111111111 4556667777
Q ss_pred hhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHH
Q 035493 204 LVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCL 275 (305)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~ 275 (305)
.........|.+.++.+ .|+++ .++....+....+.++|++++.++.+|+...|.+........+
T Consensus 249 VG~Eva~gsfl~~y~~~~~g~~~-------~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~il 314 (422)
T COG0738 249 VGAEVAIGSFLVSYLEELLGLNE-------QQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAIL 314 (422)
T ss_pred HhHHHHHHHHHHHHHHhcCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 77788889999999999 68888 8999999999999999999999999999998888766544433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=128.66 Aligned_cols=257 Identities=18% Similarity=0.133 Sum_probs=179.3
Q ss_pred HHHHHHHHHhhh-hhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHH
Q 035493 12 VILSTLVAICGS-VAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCI 66 (305)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~ 66 (305)
-|.+.+...+.. +.+|... ..+...+.++++++-+.++.+|+.+ +.+.|.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~-~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLIN-SFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchh-eehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 344444444443 3444433 3357788999999999999999888 8899999999
Q ss_pred HHHHHHHhhcchhHHHHHH-HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHH
Q 035493 67 FGWLAIAFSKDAWSLYLGR-CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRA 141 (305)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~r-~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~ 141 (305)
+|.++.+|+++++++++.- ++.|+|.|..+..+...+..+++ |+|+.+.|+...+.++|..+-|.+...+ |||+
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 9999999999999988874 88999999999999999998876 5699999999999999998888877544 9999
Q ss_pred HHHHhHHHHHHHHHHh-hcccCChHHHH----------------------H---------H----HHHHHHHhhCCCc--
Q 035493 142 LALIAAVPCLLQVVGL-FFIPESPRWLK----------------------K---------S----LKLLYSALRGKTA-- 183 (305)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~es~~~~~----------------------~---------~----~~~~~~~~~~~~~-- 183 (305)
.+++.+.+.+-..+.. ..-|.+++..+ + + .++..++.+++..
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS 281 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence 9988777765554433 33341211100 0 0 0000000011000
Q ss_pred chhhhH--------HHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 035493 184 DISMES--------ADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV 254 (305)
Q Consensus 184 ~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (305)
..+... ++.. +...........++.....++|.+.++.|+++ .++.......++.+++++++.|
T Consensus 282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~-------~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSS-------NDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred chhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-------hhhHHHHHHHHHhhhhhhhhhh
Confidence 000000 1111 44455555555667788888899999999999 8999999999999999999999
Q ss_pred HhhcccCCchh--hhhHhHHHHHHH
Q 035493 255 LLTDKSGRRPL--LLASDIGTCLSL 277 (305)
Q Consensus 255 ~l~d~~g~r~~--~~~~~~~~~~~~ 277 (305)
++.|+...++. ..++.+..+++.
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHH
Confidence 99999874433 334444444443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-14 Score=119.88 Aligned_cols=135 Identities=15% Similarity=0.210 Sum_probs=112.8
Q ss_pred cccccchhhhhhhhhcCCchh-HHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 035493 30 VGYSSPVEAGITADLGLSLIE-YSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLG 84 (305)
Q Consensus 30 ~~~~~~~~~~~~~~~~~s~~~-~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (305)
+...+...|.+.+|+|++++| .|.+.+ ++..+.+.+++.+.+.++++++..+.+.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999 776666 8999999999999999999999999999
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHH---hHHHHHHHHHHhh
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALI---AAVPCLLQVVGLF 158 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~---~~~~~~~~~~~~~ 158 (305)
|++.|++.|... ....++.+|+|+++|+++.++...+..+|.+++++++..+ |||+.+.+ ......+.++..+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999998887444 88876544 3333333445557
Q ss_pred cccCChH
Q 035493 159 FIPESPR 165 (305)
Q Consensus 159 ~~~es~~ 165 (305)
++|..++
T Consensus 201 ~LP~~~~ 207 (511)
T TIGR00806 201 FLKRPKR 207 (511)
T ss_pred hCCCCch
Confidence 7885554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=120.42 Aligned_cols=192 Identities=13% Similarity=0.004 Sum_probs=140.3
Q ss_pred HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----------------
Q 035493 73 AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV---------------- 136 (305)
Q Consensus 73 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~---------------- 136 (305)
+..++|+.++++-++.|.|.+...+..+.++++..|+|++++.+++.+.++++|..++|.++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999998842
Q ss_pred ----hhhHHHHHHhHHHHHHHHHHh--hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHH-HHHHHHHHHHhhhhchhH
Q 035493 137 ----VSWRALALIAAVPCLLQVVGL--FFIPESPRWLKKSLKLLYSALRGKTADISMESAD-IRVGVGLMVMQPLVGSAA 209 (305)
Q Consensus 137 ----~~wr~~~~~~~~~~~~~~~~~--~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 209 (305)
.+||++|++.+...++..+.+ ...||.++. +.++..+ +++. +.++..++ ..+...+..+.+......
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~---~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~f~yvg~e~~ 158 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA---DVARVSS--GDTT-QKTSAFQFTHLVLGALGIFVYVGAEVS 158 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc---ccccccc--cccc-chhhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 369999986665544444333 335664321 1110000 0000 00111111 113445566666666778
Q ss_pred HHHhHHHHHHH---hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHH
Q 035493 210 IACYASYIFAA---AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSL 277 (305)
Q Consensus 210 ~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~ 277 (305)
...|.+.|+++ .|+++ .+.+........+..+|+++++++.||+++||.+..+..+..++.
T Consensus 159 ~~~w~~~yl~~~~~~g~s~-------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 159 AGSFLVNFLSDPHALGLPE-------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHHHhcccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 88899999975 37888 888999999999999999999999999999998877766555544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.8e-14 Score=136.11 Aligned_cols=215 Identities=12% Similarity=-0.042 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHH---HHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHh
Q 035493 57 AMWLSDLFCIFGWLA---IAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLV 133 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 133 (305)
+++.+.++..++.++ +..+++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l 158 (1146)
T PRK08633 79 VIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTAL 158 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 556665554444433 44457899999999999999999999999999999999999999999999999999988888
Q ss_pred hhhh-------------hhHHHHHHhHHH-HHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHH----HHH-H
Q 035493 134 GTVV-------------SWRALALIAAVP-CLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESA----DIR-V 194 (305)
Q Consensus 134 ~~~~-------------~wr~~~~~~~~~-~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 194 (305)
+..+ +|++.+.+..+. .++.++..+.+||+|+....+.++ +......+..+..+ +.. +
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 235 (1146)
T PRK08633 159 FSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK---KKYLFPKLLWRNLKLLRSDRVLW 235 (1146)
T ss_pred HHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc---cccccHHHHHHHHHHHhcCcHHH
Confidence 7433 234444333333 333334445677766421110000 00000000000000 000 2
Q ss_pred HHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcch-hHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 195 GVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMN-LLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
...+..+...........+.|.++++ .|++. . ..+.......++.+++.++.+++.||.++++.+.++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-------~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~ 308 (1146)
T PRK08633 236 LAIIGLSYFWFISQLAQANFPAYAKEVLGLDN-------TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALG 308 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHH
Confidence 22222222222234445566766665 58887 7 788888999999999999999999999998887777666
Q ss_pred HHHHHHHHH
Q 035493 273 TCLSLSIIA 281 (305)
Q Consensus 273 ~~~~~~~~~ 281 (305)
.+++.+.+.
T Consensus 309 ~~~~~~~~~ 317 (1146)
T PRK08633 309 LALSLFLLP 317 (1146)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-16 Score=129.55 Aligned_cols=195 Identities=15% Similarity=0.058 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcc-hhhHHhHHHHHHHHHHHHHHHhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNV-RGAFTAANQLLVASGLSVIYLVGT 135 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~ 135 (305)
.+++|..+...++++.++.++++.+++.|.+||+|.+...+...++++|.+|+++ |++++|+...+.++|..++|.+++
T Consensus 138 pm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGG 217 (464)
T KOG3764|consen 138 PMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGG 217 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCccc
Confidence 8899999999999999999999999999999999999999999999999999765 799999999999999999999985
Q ss_pred hh----hhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHH--HHHHHHHhhhhchhH
Q 035493 136 VV----SWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRV--GVGLMVMQPLVGSAA 209 (305)
Q Consensus 136 ~~----~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 209 (305)
.+ |.+.+|++.+.++++-..+.+++-|..+. .++ ...+.....+-.++.++ ......++.......
T Consensus 218 ilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~----~~~----~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafL 289 (464)
T KOG3764|consen 218 ILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM----DPD----STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFL 289 (464)
T ss_pred chHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc----Ccc----ccccCccHHHHHhCchHhhhhcchhhccchHHHh
Confidence 44 99999999999988887666554332110 000 00000011111111111 111111111111111
Q ss_pred HHHhHHH-HHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 035493 210 IACYASY-IFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLL 267 (305)
Q Consensus 210 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~ 267 (305)
-.++ +. +.++...+. -+.+.......+...++..+.+.+.||+++-+++.
T Consensus 290 ePtl-slwm~e~m~~p~-------w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~ 340 (464)
T KOG3764|consen 290 EPTL-SLWMLETMFTPG-------WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLL 340 (464)
T ss_pred Cccc-HHHHHHhccCCC-------cceeeeecccccchhccCchHHHHHHhcCchhHHH
Confidence 1112 23 333344223 46778888889999999999999999999555443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-14 Score=121.04 Aligned_cols=240 Identities=9% Similarity=-0.091 Sum_probs=153.5
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHH--H-------------------------HHHHHH-HHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFG--S-------------------------AMWLSD-LFCIFGW 69 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--s-------------------------~l~~~~-~~~~~~~ 69 (305)
.....++..|...+...|..|.+.+|.|.|.+++|++. + ..++.. .+.....
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 34455678888888899999999999999999999863 2 211222 1112111
Q ss_pred HHHH---hhcc-hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHh----hhhhhhHH
Q 035493 70 LAIA---FSKD-AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLV----GTVVSWRA 141 (305)
Q Consensus 70 ~~~~---~~~~-~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i----~~~~~wr~ 141 (305)
...+ ...+ ...++..-++.++..+...+....+..|..++|+++...+....+..+|..+++.. .+..|||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~ 164 (390)
T TIGR02718 85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP 164 (390)
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 1111 1222 33444555666677778888888888999998888988888888888888888753 45669999
Q ss_pred HHHHhHHHHHHHHHHhhcccCC-hHHHHH--HHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHH
Q 035493 142 LALIAAVPCLLQVVGLFFIPES-PRWLKK--SLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIF 218 (305)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~es-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
.|++.++..++..+..++.+|+ ++...+ +.++...+..+++ +. +......+...........+.+.++
T Consensus 165 ~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~-~~~~~~~~l~~~~~~~~~~~~~~~l 235 (390)
T TIGR02718 165 AFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRP--------LA-WSLLALALLSAMTAVSGFGLSKLYL 235 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCc--------CH-HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999988877665554444433 211000 0001111111110 00 2222222333333444555667788
Q ss_pred HHhcccccccCCcchhHHHHHHHHHH-HHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 219 AAAELMNIQGNDSMNLLFVTDLLTAI-IQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
++.|+++ ++.+......+. ..+++.++.+++.||+|+|+.+..+....
T Consensus 236 ~~~G~s~-------~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 236 VDAGWPL-------EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HhcCCCH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8889999 888887777664 66677899999999999999888766554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-14 Score=135.49 Aligned_cols=193 Identities=10% Similarity=-0.051 Sum_probs=135.0
Q ss_pred HHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q 035493 70 LAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALI 145 (305)
Q Consensus 70 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~ 145 (305)
......+|++.++++|+++|++.+...|...+++.|++|+++|++++++.+++.++|.+++|.++..+ +|++.|..
T Consensus 100 ~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 100 IYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33344589999999999999999999999999999999999999999999999999999999888554 89999965
Q ss_pred hHHHHHHHHHHhhcccCChHHHHH---------HHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHH
Q 035493 146 AAVPCLLQVVGLFFIPESPRWLKK---------SLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASY 216 (305)
Q Consensus 146 ~~~~~~~~~~~~~~~~es~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (305)
.++..++..+..+++|+++..... +..+..+...+++ .. +...+..+........+..+.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~p~ 250 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADK--------RI-WLAILGISWFWLVGAVVLSQLPL 250 (1140)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCc--------hH-HHHHHHHHHHHHHHHHHHHHhHH
Confidence 555555555555666665321000 0000111111110 00 22222222222234455567788
Q ss_pred HHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 217 IFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 217 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
++++ .|.+. ...+......+++.+++.+..+++.||..+++.+..+.++.++..+
T Consensus 251 ~~~~~~g~~~-------~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 306 (1140)
T PRK06814 251 LAKETLGGDE-------NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL 306 (1140)
T ss_pred HHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence 8877 58888 8889999999999999999999999887777766555555444443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=120.96 Aligned_cols=129 Identities=8% Similarity=0.020 Sum_probs=100.1
Q ss_pred hhhhhhhcccccccc-hhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHh
Q 035493 21 CGSVAYGCSVGYSSP-VEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAF 74 (305)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~ 74 (305)
+..+...+......+ ....+++++|++.++.+++.+ ++..+.+++.++.+.+++
T Consensus 21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~ 100 (489)
T PRK10207 21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM 100 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443443 444567889999998876655 889999999999999999
Q ss_pred hcchhH-HHHHHHHHhhcccchhhhhhhhhhhccCCc--chhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhH
Q 035493 75 SKDAWS-LYLGRCSLGIGLELMTYVIPIYIAEITPKN--VRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAA 147 (305)
Q Consensus 75 ~~~~~~-l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~ 147 (305)
+++... ++++|.++|+|.|...|...+++.|.+|++ +|+++.+++..+.++|..++|.++ +..|||+.|++.+
T Consensus 101 ~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 101 SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 876554 558999999999999999999999999877 457788888888888888777666 4559999999865
Q ss_pred HH
Q 035493 148 VP 149 (305)
Q Consensus 148 ~~ 149 (305)
+.
T Consensus 181 i~ 182 (489)
T PRK10207 181 AG 182 (489)
T ss_pred HH
Confidence 43
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-13 Score=119.20 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCI 66 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~ 66 (305)
+++|.............+.. ...+...|.+++++|+|.++.+++.+ ++.++.+++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 45565555444444444432 33456778899999999999887655 8889999999
Q ss_pred HHHHHHHhh------cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH-HHHhhhhh--
Q 035493 67 FGWLAIAFS------KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV-IYLVGTVV-- 137 (305)
Q Consensus 67 ~~~~~~~~~------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~i~~~~-- 137 (305)
++.++++++ ++++.+.+.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|.++ +++....+
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 689999999999999999999999999999997 67999999999999999976 44444444
Q ss_pred hhHHHHHHhHHHHHHHHHHh-hc--ccCChH
Q 035493 138 SWRALALIAAVPCLLQVVGL-FF--IPESPR 165 (305)
Q Consensus 138 ~wr~~~~~~~~~~~~~~~~~-~~--~~es~~ 165 (305)
+|+..|++.++.+++..+.. .+ .|+.|+
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~ 212 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHL 212 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchh
Confidence 78888888777766655433 33 444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-13 Score=117.52 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred HhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh
Q 035493 20 ICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS 75 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~ 75 (305)
++......+.....+.+++.+.+|+|-+ ++..|+.+ .++.+.++..+|++.++-+
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 3333333344455567788899999854 44444444 8999999999999999999
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCL 151 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~ 151 (305)
+|...++.+..+.|+|.|.... ....++|..|.|+|+...++...........++.++. .-+|||.|++..+...
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG 207 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence 9999999999999999766654 5566899999999988877776655544445555553 3389999999888766
Q ss_pred HHHH
Q 035493 152 LQVV 155 (305)
Q Consensus 152 ~~~~ 155 (305)
+.++
T Consensus 208 i~~v 211 (599)
T PF06609_consen 208 IALV 211 (599)
T ss_pred HHHH
Confidence 6543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-13 Score=115.28 Aligned_cols=242 Identities=10% Similarity=-0.016 Sum_probs=139.4
Q ss_pred cchhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSL 88 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 88 (305)
.+..+.+.+++|++.+|+|++.+ ++.++.+...++..+..+.++++.+.+.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55666778889999999998877 66666777777777888889999999999999
Q ss_pred hhcccchhhhhhhhhh--------hccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHHHHHHHhhcc
Q 035493 89 GIGLELMTYVIPIYIA--------EITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
|++.+...+...+... |......|.+..|. .++.+|..+++.+....+|+. |++.++..++..+..+++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~ 179 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTL 179 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcC
Confidence 9987777776655432 22222334454442 334444444443322223543 445555555555555678
Q ss_pred cCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccC-CcchhHHHH
Q 035493 161 PESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGN-DSMNLLFVT 238 (305)
Q Consensus 161 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 238 (305)
||+|+...++ ++..++..+. +..+..++.+ +......+...........+.+.+.++.|.++...+ ......+..
T Consensus 180 ~e~~~~~~~~-~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~ 256 (418)
T TIGR00889 180 PDIPVAKSTA-KMSIKVMLGL--DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIW 256 (418)
T ss_pred CCCCCCcccc-ccCHHHHhhh--hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHH
Confidence 8876311100 0000000000 0000000001 112222222222223334555667777664431100 011455778
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 239 DLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.....+..+++.+..+++.||+|||+.+..+.+...+....+.
T Consensus 257 ~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 257 MSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999988877766654443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-13 Score=115.96 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=136.9
Q ss_pred ccccccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHH---HHhh-----
Q 035493 29 SVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLA---IAFS----- 75 (305)
Q Consensus 29 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~---~~~~----- 75 (305)
......|..|. +++++|.++.+.+++.+ .++.+.....++... ..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (396)
T TIGR00882 17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQS 96 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34445666665 45678999999987777 333333333332221 1112
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh---hhhHHHHHHhHHHHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV---VSWRALALIAAVPCLL 152 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~---~~wr~~~~~~~~~~~~ 152 (305)
+......+.|++.|++.+...+....+..|..+ ++++..+......++|..+++.++.. .+||..|++.+...++
T Consensus 97 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 97 NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALI 174 (396)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHH
Confidence 223445677899999988888888877777543 33455566666667777777776643 3999999998887776
Q ss_pred HHHHhhc-ccCChHHHHHHHHHHHHHhhCCC---cchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh----cc
Q 035493 153 QVVGLFF-IPESPRWLKKSLKLLYSALRGKT---ADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA----EL 223 (305)
Q Consensus 153 ~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~ 223 (305)
..+..+. .||+|+.. +.++.. +.++++ ++..+..++++ +......+...........+.+.++++. +.
T Consensus 175 ~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 251 (396)
T TIGR00882 175 LMLLLMFAKPKAPSSA--TVANAL-GANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQ 251 (396)
T ss_pred HHHHHHHhCCCCchhh--hhhccc-ccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 6544433 45544311 100000 000000 01111111111 1222222222222233334456665553 33
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHH
Q 035493 224 MNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
+. ...+.......+...++....+++.||++||+.+.++..+.++....
T Consensus 252 ~~-------~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 252 GT-------RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG 300 (396)
T ss_pred ch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 33 45667777788888999999999999999999988877766665444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-13 Score=115.26 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=125.0
Q ss_pred cccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHH---HHhhc-----ch
Q 035493 32 YSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLA---IAFSK-----DA 78 (305)
Q Consensus 32 ~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~---~~~~~-----~~ 78 (305)
...+..|. +++++|+|..+.|++.+ ++..+..+..++... ...++ ..
T Consensus 28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (420)
T PRK09528 28 SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL 107 (420)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 56669999999998877 444433333322221 11111 11
Q ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHH
Q 035493 79 WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVPCLLQVV 155 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~~~~~~~ 155 (305)
....++++..|.+.....+....+..| . +++|++..+......++|..+++.++..+ +||..|++.++..++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLV 185 (420)
T ss_pred HHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHH
Confidence 112334444444433333333333322 2 24567777777777788888887777544 899999998877766665
Q ss_pred Hhhc-ccCChHHHHHHHHHHHHHhhCCCcchh---hhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh----ccccc
Q 035493 156 GLFF-IPESPRWLKKSLKLLYSALRGKTADIS---MESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA----ELMNI 226 (305)
Q Consensus 156 ~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~ 226 (305)
..++ .+|.++....+ ++. ++ ++++.+.+ +..++.. +...+..+...........+.|.++.+. +.+.
T Consensus 186 ~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 261 (420)
T PRK09528 186 LLFFAKPDAPSTAKVA-NAL-GA-NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGT- 261 (420)
T ss_pred HHhcccccccchhhhc-cch-hc-ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-
Confidence 5544 34433211000 000 00 00000000 0011111 1111111111111222333345554442 3444
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 227 QGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.+.+.......+...++.++.+++.||+|+|+.+..+..+..+....++
T Consensus 262 ------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 262 ------RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG 310 (420)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 5667777888888899999999999999999998877776666554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-13 Score=115.44 Aligned_cols=229 Identities=14% Similarity=0.087 Sum_probs=146.6
Q ss_pred hhhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcc------hhH
Q 035493 36 VEAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKD------AWS 80 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~------~~~ 80 (305)
..+.+.+++|+++.+.|++.+ .++.+.....++.+++.+.++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 445677889999999998777 567787888888877777654 356
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhcc-CCcchhhHHhHHHHHHHHHHHHHHHhh-----------hhhhhHHHHHHhHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEIT-PKNVRGAFTAANQLLVASGLSVIYLVG-----------TVVSWRALALIAAV 148 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~-----------~~~~wr~~~~~~~~ 148 (305)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+. ...+||+.+.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 677888899988887777888888987 468899999998888777766544332 13489999998888
Q ss_pred HHHHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhH----HHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh-
Q 035493 149 PCLLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMES----ADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA- 221 (305)
Q Consensus 149 ~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (305)
+.++..+. .+..||+++...+++ +++.+..+.. ++.. +......+...........+.+++.+..
T Consensus 182 l~~~~~~~~~~~~~e~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSEIPKNI--------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL 253 (437)
T ss_pred HHHHHHHHHHcCCEecCCCCCccc--------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeec
Confidence 87766544 456777652100000 0000111111 1111 2222222222222333333334433332
Q ss_pred cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 222 ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 222 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
+ ++ ...+.......++.+++.++.+++.||+|+|+....+..+..++.+.+
T Consensus 254 ~-~~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 254 G-DP-------ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred C-Ch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 2 23 445566667788999999999999999999999888877666655544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=108.40 Aligned_cols=132 Identities=15% Similarity=0.109 Sum_probs=106.3
Q ss_pred hhhhhcccccccchhhhh-hhh--hcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHh
Q 035493 23 SVAYGCSVGYSSPVEAGI-TAD--LGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAF 74 (305)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~ 74 (305)
.+...+......+.+|.+ .++ +|++..+.+++.+ ++..+..+..++.++.++
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 344444544456666655 445 8999999887766 788888899999999999
Q ss_pred hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcc---hhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhH
Q 035493 75 SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNV---RGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAA 147 (305)
Q Consensus 75 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~ 147 (305)
+++++.+.++|.+.|+|.|...+...++++|++|+++ |+++.++...+.++|..++|.++.. .+||+.|.+.+
T Consensus 99 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 99 SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999999999999999999999999999998764 8889999999999999999888744 48999999877
Q ss_pred HHHHHHH
Q 035493 148 VPCLLQV 154 (305)
Q Consensus 148 ~~~~~~~ 154 (305)
+..++..
T Consensus 179 ~~~~~~~ 185 (475)
T TIGR00924 179 VGMVIGL 185 (475)
T ss_pred HHHHHHH
Confidence 6544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=108.81 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=95.9
Q ss_pred hhhhcccccccchh-hhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhc-
Q 035493 24 VAYGCSVGYSSPVE-AGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSK- 76 (305)
Q Consensus 24 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~- 76 (305)
+...+......+.+ ..+.+++|++.++.+++.+ .+..+..+..++..++++++
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~ 110 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH 110 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333433344444 4456889999888765444 67788888888888888874
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcc--hhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNV--RGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPC 150 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~ 150 (305)
+.+.+.++|+++|+|.|...+...+++.|++|+++ |..+.++++.+.++|..++|.++. ..|||+.|++.++..
T Consensus 111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~ 190 (500)
T PRK09584 111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM 190 (500)
T ss_pred cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 56677788999999999999999999999998654 445778888888888888887774 449999999877544
Q ss_pred HH
Q 035493 151 LL 152 (305)
Q Consensus 151 ~~ 152 (305)
++
T Consensus 191 ~i 192 (500)
T PRK09584 191 LI 192 (500)
T ss_pred HH
Confidence 33
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=110.32 Aligned_cols=257 Identities=18% Similarity=0.169 Sum_probs=173.8
Q ss_pred HHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHH
Q 035493 16 TLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLA 71 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~ 71 (305)
..+.++..+..++..+.+...+..+++.|+++.++.|++.+ .+-.|.++.++++++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll 178 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLL 178 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHH
Confidence 34455556667777788888999999999999999887666 555677777777777
Q ss_pred HHhhc-------------------c--------------------------------h-hHHHHHHHHHhhcccchhhhh
Q 035493 72 IAFSK-------------------D--------------------------------A-WSLYLGRCSLGIGLELMTYVI 99 (305)
Q Consensus 72 ~~~~~-------------------~--------------------------------~-~~l~~~r~l~G~g~g~~~~~~ 99 (305)
.++-+ + + ..++++.++.|+|....++..
T Consensus 179 ~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlG 258 (735)
T KOG3626|consen 179 FALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLG 258 (735)
T ss_pred HhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCC
Confidence 65520 0 2 256778999999999999999
Q ss_pred hhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHhHHHHHHHHHH
Q 035493 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----------------------SWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 100 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----------------------~wr~~~~~~~~~~~~~~~~ 156 (305)
.+|+-|...+++-+..+|+......+|.++|.++++.. .|..-|++.+...++..+.
T Consensus 259 isYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p 338 (735)
T KOG3626|consen 259 ISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVP 338 (735)
T ss_pred CccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888332 3777788888887777777
Q ss_pred hhcccCChHHHHH-HHHHHHHHhhC------CCcchhhhHHHHH------------HHHHHHHHhhhhchhHHHHhHHHH
Q 035493 157 LFFIPESPRWLKK-SLKLLYSALRG------KTADISMESADIR------------VGVGLMVMQPLVGSAAIACYASYI 217 (305)
Q Consensus 157 ~~~~~es~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 217 (305)
++++|+..+...+ ...+..+..+. .+.+..+..++.. ....+........+.++..|+|.|
T Consensus 339 ~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKy 418 (735)
T KOG3626|consen 339 LFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKY 418 (735)
T ss_pred HHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHH
Confidence 7777664331111 00111111111 1111111111111 445555555666788889999999
Q ss_pred HHHh-cccccccCCcchhHHHHHHHHH-HHHHHHHHHHHHhhcccCC--chhhhhHhHHHHHHHHH
Q 035493 218 FAAA-ELMNIQGNDSMNLLFVTDLLTA-IIQLPAIVASVLLTDKSGR--RPLLLASDIGTCLSLSI 279 (305)
Q Consensus 218 ~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~g~--r~~~~~~~~~~~~~~~~ 279 (305)
++++ |.+. ..+.......+ .+..+|.+++|++++|+.. |.......+...++.+.
T Consensus 419 LE~Qfg~sa-------s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 419 LETQFGISA-------SLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHcCCCH-------HHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 9985 8888 77766664444 4456777889999998753 44444443333333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-11 Score=104.56 Aligned_cols=217 Identities=19% Similarity=0.135 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAF-----SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIY 131 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 131 (305)
+++.+-++..+.....++ ..+.+.+++.-++.|++.+...|.-.+.+.|..|+++...+.++.+...++...+||
T Consensus 77 ili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGP 156 (524)
T PF05977_consen 77 ILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccc
Confidence 555555544443333222 147888999999999999999999999999999999999999999998888888887
Q ss_pred Hhhhh----hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhch
Q 035493 132 LVGTV----VSWRALALIAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGS 207 (305)
Q Consensus 132 ~i~~~----~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (305)
.++.. +|-.+.|.+.++.-++........++.++....+.++..+.++... +.....+..+..+........ ..
T Consensus 157 algG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~-ryv~~~~~l~~~l~~~~~~~l-~~ 234 (524)
T PF05977_consen 157 ALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGL-RYVRSSPPLRSVLLRSFLFNL-FA 234 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHH-HHHhcchHHHHHHHHHHHHHH-hh
Confidence 77744 4778888887766555444333333221100001111111111100 000000111112221222121 12
Q ss_pred hHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 208 AAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 208 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.......|.+.++ .|.++ ...+......+++.++|.++.+++.+|.++++.+..+.+..+++++.+++
T Consensus 235 ~a~~aLlPl~a~~~l~~~a-------~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGA-------SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred hHHHHhhhHHHHHHhCCcH-------HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc
Confidence 2333446777766 57777 88899999999999999999999999999999888887777776666553
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=98.56 Aligned_cols=250 Identities=12% Similarity=0.023 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH--------------------------HHHHHHHH
Q 035493 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--------------------------AMWLSDLF 64 (305)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s--------------------------~l~~~~~~ 64 (305)
++....+.+++-.|-..+.....+....+++.|.+++.++..++.+ +.+.++.+
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 4555566666666777777777777788888898988888776666 22332222
Q ss_pred HHHHHHHH---HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH----HHhhhhh
Q 035493 65 CIFGWLAI---AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI----YLVGTVV 137 (305)
Q Consensus 65 ~~~~~~~~---~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~i~~~~ 137 (305)
.+|.++. ...+.+|.+..+|++.|+|.-.....-+.|..-|+..|+.+.++|+.....-+|..+- |.+.+..
T Consensus 121 -~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 121 -FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred -HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 2333333 2458899999999999999888888889999999999999999999988888886553 3333222
Q ss_pred h------hHHHHH----HhHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchh-----hhHHHHHHHHHHHHHh
Q 035493 138 S------WRALAL----IAAVPCLLQVVGLFFIPESPRWLKKSLKLLYSALRGKTADIS-----MESADIRVGVGLMVMQ 202 (305)
Q Consensus 138 ~------wr~~~~----~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 202 (305)
+ =+...- +....+....+... +..+.++++++.+++.++...+.. .......+......+.
T Consensus 200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical----~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~ 275 (459)
T KOG4686|consen 200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICAL----SLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVL 275 (459)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHH
Confidence 1 011100 01111111111111 112222344444433332211111 1111222555555555
Q ss_pred hhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 203 PLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
+......+....|.++++ .|+++ ..++...+.......+.+++.|.++||.|++..++.+..+
T Consensus 276 yyva~fPFi~lg~~fF~~rfGlS~-------~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 276 YYVAWFPFITLGPMFFQKRFGLSA-------VSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred HHHHHHHHhhhhHHHHHHhhCCCh-------hhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 555555666666888877 59999 7888888888888899999999999999999887765443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-14 Score=123.96 Aligned_cols=248 Identities=15% Similarity=0.156 Sum_probs=3.0
Q ss_pred hhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc----
Q 035493 25 AYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK---- 76 (305)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~---- 76 (305)
..+...+.....++.++++|+++.++.|++.+ .+-.|.++.++|+++.++-+
T Consensus 14 ~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~ 93 (539)
T PF03137_consen 14 FQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence 33666777888889999999999999998887 55566666666666544310
Q ss_pred ----------------------------------------------chhHHHHHHHHHhhcccchhhhhhhhhhhccCCc
Q 035493 77 ----------------------------------------------DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKN 110 (305)
Q Consensus 77 ----------------------------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~ 110 (305)
-+..++++.++.|+|....++...+|+-|..+++
T Consensus 94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~ 173 (539)
T PF03137_consen 94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK 173 (539)
T ss_dssp ----------------------------------------------------------SSS-------------------
T ss_pred CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence 0345788999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 035493 111 VRGAFTAANQLLVASGLSVIYLVGTVV--------------------------SWRALALIAAVPCLLQVVGLFFIPESP 164 (305)
Q Consensus 111 ~r~~~~~~~~~~~~~G~~~~~~i~~~~--------------------------~wr~~~~~~~~~~~~~~~~~~~~~es~ 164 (305)
+-+...|+..+...+|.++|.+++... .|-.-|++.+...++..+..+++|+.-
T Consensus 174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 999999999999999998888777222 255556666666666655555555432
Q ss_pred HHHH---HH----HHHHH----HHhhCCCcc--hhhhHHHH----H--------HHHHHHHHhhhhchhHHHHhHHHHHH
Q 035493 165 RWLK---KS----LKLLY----SALRGKTAD--ISMESADI----R--------VGVGLMVMQPLVGSAAIACYASYIFA 219 (305)
Q Consensus 165 ~~~~---~~----~~~~~----~~~~~~~~~--~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (305)
+... ++ +++.. ++.++++.. ..+..++. + ....+..........++..|.|.|+|
T Consensus 254 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE 333 (539)
T PF03137_consen 254 PGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLE 333 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 00 00000 000000000 00001110 0 34444444555567788889999998
Q ss_pred Hh-cccccccCCcchhHHHHHHHHH-HHHHHHHHHHHHhhcccC--CchhhhhHhHHHHHHHHH
Q 035493 220 AA-ELMNIQGNDSMNLLFVTDLLTA-IIQLPAIVASVLLTDKSG--RRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 220 ~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~g--~r~~~~~~~~~~~~~~~~ 279 (305)
.+ +.++ .++........ .+..+|.+++|++.+|++ .|+......+...++.+.
T Consensus 334 ~QF~~sa-------s~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 334 SQFGLSA-------SQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHhCCCH-------HHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 84 8887 66655554443 366788899999999875 455555544444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=100.50 Aligned_cols=197 Identities=13% Similarity=0.007 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++..|....++...+.+.++|+..++++|++.|+..|- ..+..++++|.+++|+|++.++.....+++|.++||.++.+
T Consensus 100 vll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy 178 (451)
T KOG2615|consen 100 VLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY 178 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence 89999999999999999999997777779999999654 66688999999999999999999999999999999999976
Q ss_pred hhh------HHHHH----HhHHHHHH-HHHHhhcccCChHHHHH--------HHHHHHHHhhCCCc--------ch-hhh
Q 035493 137 VSW------RALAL----IAAVPCLL-QVVGLFFIPESPRWLKK--------SLKLLYSALRGKTA--------DI-SME 188 (305)
Q Consensus 137 ~~w------r~~~~----~~~~~~~~-~~~~~~~~~es~~~~~~--------~~~~~~~~~~~~~~--------~~-~~~ 188 (305)
+.- +.+|. +..+.... .....+++||+-+..++ |+.+..++..+... +. ..+
T Consensus 179 la~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~ 258 (451)
T KOG2615|consen 179 LAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLD 258 (451)
T ss_pred HHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccc
Confidence 632 12222 22222222 23445778997432211 11111111111000 00 000
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHhHHHHH-HHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 035493 189 SADIRVGVGLMVMQPLVGSAAIACYASYIF-AAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSG 261 (305)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 261 (305)
.-.......+..+.+...+....++.+.+. +..|+++ .+.+......++.+.+.........||.+
T Consensus 259 ~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss-------~~~G~vl~~tGl~m~~~ql~~~~~l~~~~ 325 (451)
T KOG2615|consen 259 FISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSS-------MQQGKVLSTTGLLMLVIQLALVPILPRYK 325 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCCh-------hhheeeeehhhHHHHHHHHhccccccccc
Confidence 000002223333333322333333333332 3358888 88888888888777777766666666654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-10 Score=98.84 Aligned_cols=253 Identities=13% Similarity=0.060 Sum_probs=147.8
Q ss_pred ccccchhhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcchh--
Q 035493 31 GYSSPVEAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKDAW-- 79 (305)
Q Consensus 31 ~~~~~~~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~~~-- 79 (305)
....+..+.+.+++|.+..+.+++.. .++.+.....++..+.+++++..
T Consensus 21 ~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 21 ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 33455556677889999988886655 44555666667777777776643
Q ss_pred ---------------HHHHHHHHHhhcccchhhhhhhhhhhccCCcch--hhHHhHHHHHHHHHHHHHHHhhhhh-----
Q 035493 80 ---------------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVR--GAFTAANQLLVASGLSVIYLVGTVV----- 137 (305)
Q Consensus 80 ---------------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~~~~----- 137 (305)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|..+++.++...
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~ 180 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 222333344457777888889999999998865 5789999999999999998877432
Q ss_pred --------------hhHHHHHHhHHHHHHHHH-HhhcccCChHHHHHHHH-HHHHHhhCCC--cchhhhHHHHH------
Q 035493 138 --------------SWRALALIAAVPCLLQVV-GLFFIPESPRWLKKSLK-LLYSALRGKT--ADISMESADIR------ 193 (305)
Q Consensus 138 --------------~wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~------ 193 (305)
+.|..|++.++..++..+ ..+..+|.|....++.+ +..++.++.+ ....+-.+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m 260 (477)
T TIGR01301 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPV 260 (477)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHH
Confidence 457888888777666654 44668886531111100 0000000000 00011111111
Q ss_pred HHHHHHHHhhhhchhHHHHhHHHHHHHh--cccccccCCcchh---HHHHHHHHHHHHHHHHHHHHHhhcccCC-chhhh
Q 035493 194 VGVGLMVMQPLVGSAAIACYASYIFAAA--ELMNIQGNDSMNL---LFVTDLLTAIIQLPAIVASVLLTDKSGR-RPLLL 267 (305)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~g~-r~~~~ 267 (305)
+.+....+....+...+..|.+.+..+. +-++...+.+.+. ..+......+...+.+++..++.+|+|+ |+...
T Consensus 261 ~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~ 340 (477)
T TIGR01301 261 WILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWG 340 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 3333333334445555666666665542 2222111111111 2344555556666777778888999985 67768
Q ss_pred hHhHHHHHHHHHHHHH
Q 035493 268 ASDIGTCLSLSIIALA 283 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (305)
.+.++.+++++...+.
T Consensus 341 ~s~~~~~~~l~~~~~i 356 (477)
T TIGR01301 341 IVNIILAICLAATVLV 356 (477)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777777666543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=91.88 Aligned_cols=261 Identities=13% Similarity=0.035 Sum_probs=159.4
Q ss_pred CchHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHH
Q 035493 7 SAIPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSD 62 (305)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~ 62 (305)
+..++||.+.+..++-.+.+++..-.++++....++.|+ +.+..-|..- ..+++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 356789999999999899998888888888888888888 4333222211 778888
Q ss_pred HHHHHHHHHHHhhc------chh--HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 63 LFCIFGWLAIAFSK------DAW--SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 63 ~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+..+|..+...+. .++ ....+..+.+.++-.....-.....-|+++++|..+..+-..+..+|.+++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 88888888877662 344 6667888888886666555556667799999999999998888888888877766
Q ss_pred hh----------hhhHH--HHHHhHHHHHHHHHHh-hcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHH
Q 035493 135 TV----------VSWRA--LALIAAVPCLLQVVGL-FFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMV 200 (305)
Q Consensus 135 ~~----------~~wr~--~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 200 (305)
.. ..|.. .|+.....+.+.+.+. +..+|.|+..++.+....++. +-.....+..++.+ ....+.+
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~-~f~~si~~~~~n~~F~il~~~y 275 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDA-SFPKSIKSCFKNRQFIILAICY 275 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcC-cHHHHHHHHHcCccHHHHHHHH
Confidence 22 25655 4554444443333322 333333322111111111100 00000111111111 3333333
Q ss_pred HhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc-hhhhhHhHHHHHH
Q 035493 201 MQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRR-PLLLASDIGTCLS 276 (305)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r-~~~~~~~~~~~~~ 276 (305)
......++...+.+...+...|++. ..++.......+++++++.+.|.+.||.+.- +...+......++
T Consensus 276 gi~~g~F~~l~~~l~~~l~~sgY~~-------~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 276 GIGLGLFNSLSTLLNLALCPSGYEG-------VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hhhHHHHHHHHHHhhhccccccCCc-------cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333334444444333333456766 7888999999999999999999999997653 3444444444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=100.98 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=127.2
Q ss_pred hhhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcc------hhH
Q 035493 36 VEAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKD------AWS 80 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~------~~~ 80 (305)
..+.+.+++|+|..+.|.+.+ .++.+....+++..+....++ ...
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 455678889999999998777 566676777666655555543 345
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhcc-CCcchhhHHhHHHHHHHHHHHHHHHhh----h-------hhhhHHHHHHhHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEIT-PKNVRGAFTAANQLLVASGLSVIYLVG----T-------VVSWRALALIAAV 148 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~----~-------~~~wr~~~~~~~~ 148 (305)
+++...+.+.+.......-.++.+|+. ++++|++..+....+..+|..+++.+. . ..+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666666777776677777778999988 557899888887777777766665432 1 2368888887777
Q ss_pred HHHHHHHH-hhcccCChHHHHH---HHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhccc
Q 035493 149 PCLLQVVG-LFFIPESPRWLKK---SLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELM 224 (305)
Q Consensus 149 ~~~~~~~~-~~~~~es~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (305)
.+++..+. .+..+|.++...+ +..+..++..+++ .. +......+.............+++.+. .++
T Consensus 192 i~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~--------~~-~~l~~~~~~~~~~~~~~~~~~~y~~~~-~~~ 261 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNS--------QW-RIMFIFNVVLLTAVVTRGGATLYYVNY-VLL 261 (444)
T ss_pred HHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCc--------hH-HHHHHHHHHHHHHHHHHhhhhheeeee-ecC
Confidence 76655443 3444553211000 0011111111110 00 112222222211122112222222222 122
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 225 NIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
.. +..........+..+++.++.+++.||+|+|+....+.....
T Consensus 262 ~~------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~ 305 (444)
T PRK09669 262 RP------DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFV 305 (444)
T ss_pred CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 20 223344445567778888899999999999998887765444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=101.16 Aligned_cols=252 Identities=13% Similarity=0.008 Sum_probs=145.4
Q ss_pred HHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHH-HHHH
Q 035493 19 AICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFC-IFGW 69 (305)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~-~~~~ 69 (305)
....++..|..........|.+++++|+|+++++...+ .++++.++. .+..
T Consensus 31 ~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~ 110 (468)
T TIGR00788 31 GLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILY 110 (468)
T ss_pred HHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 33345666766333345566778889999999976655 445555444 2333
Q ss_pred HHHHhhcchhHHH-HHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHH---HHHHHHHHHHhh----hhhhhHH
Q 035493 70 LAIAFSKDAWSLY-LGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLL---VASGLSVIYLVG----TVVSWRA 141 (305)
Q Consensus 70 ~~~~~~~~~~~l~-~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~---~~~G~~~~~~i~----~~~~wr~ 141 (305)
...+..++..... +.+++.+++.+...+++.++..|..+ ++++...+..+.. ..+|.++++.++ ...+||.
T Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 111 GLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3333335544444 48899999999999999999999998 5454433333222 234555555544 5568999
Q ss_pred HHHHhHHHHHHHHHHhhcccCChH-HHHH--HH---------HHHHHHhhCCCcchhhhHHHHH--HHHHHHHHhhhhch
Q 035493 142 LALIAAVPCLLQVVGLFFIPESPR-WLKK--SL---------KLLYSALRGKTADISMESADIR--VGVGLMVMQPLVGS 207 (305)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~es~~-~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 207 (305)
.|++.+...++..+...+++|++. ..++ +. ....+..++...+..+..++.. ......++......
T Consensus 190 ~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~ 269 (468)
T TIGR00788 190 LFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLP 269 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcC
Confidence 999988887777655677788531 0000 00 0000000000000001111111 11111111011111
Q ss_pred hHHHH-hHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHH
Q 035493 208 AAIAC-YASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 208 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
..... |. ..-+..|+++ ...+......+++.+++....+++.+|++.|+.+..+.++..++...
T Consensus 270 ~~~~~~f~-~~~~~lG~s~-------~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~ 334 (468)
T TIGR00788 270 GASGSVFC-ATTQCLPGGP-------SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLF 334 (468)
T ss_pred CCCceeEE-EEcccCCCCc-------chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhC
Confidence 11100 10 1112468888 89999999999999999999999999999999998887777665544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-10 Score=96.16 Aligned_cols=236 Identities=14% Similarity=0.145 Sum_probs=150.1
Q ss_pred hhhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhh-c-------ch
Q 035493 36 VEAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFS-K-------DA 78 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~-~-------~~ 78 (305)
..+.+.+..|+++...|.+.. .++.+.....++..+.... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345567778999988887766 6667777777777766655 3 23
Q ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhccC-CcchhhHHhHHHHHHHHHHHHHHHhh----hhh-------hhHHHHHHh
Q 035493 79 WSLYLGRCSLGIGLELMTYVIPIYIAEITP-KNVRGAFTAANQLLVASGLSVIYLVG----TVV-------SWRALALIA 146 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~-------~wr~~~~~~ 146 (305)
..+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+. ..+ +|++...+.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 345677777799988988889999999997 46899999998888888876444333 111 699999888
Q ss_pred HHHHHHHHHH-hhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHh-ccc
Q 035493 147 AVPCLLQVVG-LFFIPESPRWLKKSLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAA-ELM 224 (305)
Q Consensus 147 ~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 224 (305)
+++.++..+. .+..+|.++...++ ++ ..+.++.-.+..+ .++. .......+....+........+++.+.. |.+
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~~~~~~-~~-~~~~~~~~~~~~~-nr~~-~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~ 259 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSVEVTEQ-EK-KISLRDSLRSLFR-NRPF-RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE 259 (428)
T ss_pred HHHHHHHhhhhhheeeecccccccc-cc-ccccccchhhhcc-cchH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc
Confidence 8887776654 46677722111110 00 0000000000000 0111 2233333333333444444555566553 333
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 225 NIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
. ..+.......+..+++.++.++++||+|+|+....+..+..++.+.+.+.
T Consensus 260 ~--------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 260 G--------LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred h--------hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 3 44566677888899999999999999999999999988887777665543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=93.75 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhh--hcCCchhHHHHHH-------------------------HHHHH
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITAD--LGLSLIEYSVFGS-------------------------AMWLS 61 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s-------------------------~l~~~ 61 (305)
++.+|..+.++.+..+..+.+.++..+..-+..++ .+.+.+..|++.+ -++.|
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 34556666677777788888888887766555555 6677777888877 78899
Q ss_pred HHHHHHHHHHH-Hhh---c-chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 62 DLFCIFGWLAI-AFS---K-DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 62 ~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.++..+|+++. +.. + +.+.++++|++.|+|.| .....-+|+++....++|.++++....+..+|..+||.+...
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 99999999888 333 3 56788999999999954 466688999999888999999999999888888888888744
Q ss_pred h------h-----------hHHHHHHhHHHHHHHHHH-hhcccCChH
Q 035493 137 V------S-----------WRALALIAAVPCLLQVVG-LFFIPESPR 165 (305)
Q Consensus 137 ~------~-----------wr~~~~~~~~~~~~~~~~-~~~~~es~~ 165 (305)
+ | ...+-|+.++..++..+. ..+++|.++
T Consensus 188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 3 1 234667777777776644 456777665
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=92.76 Aligned_cols=241 Identities=17% Similarity=0.084 Sum_probs=148.5
Q ss_pred cccccchhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 035493 30 VGYSSPVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLG 84 (305)
Q Consensus 30 ~~~~~~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (305)
.+...|..|..-++.|.|.+|+|.+.+ .+.+..++.++........++++.+++.
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~ 97 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVI 97 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344567778888889999999998877 5555555566656666677899988888
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcc--hhhHHhHHHHHHHHHHHH-HHHhhhhhh---hHHHHHHhHHHHHHHHHHhh
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNV--RGAFTAANQLLVASGLSV-IYLVGTVVS---WRALALIAAVPCLLQVVGLF 158 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~-~~~i~~~~~---wr~~~~~~~~~~~~~~~~~~ 158 (305)
-++..+......|...++..+...+++ -|+.-..-+.++.++... +..+....+ ....+++.+...++.....+
T Consensus 98 ~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l 177 (400)
T PF03825_consen 98 MLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL 177 (400)
T ss_pred HHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 888888888888999888888876432 233322233333333221 122233332 23455555555554444455
Q ss_pred cccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhc-ccccccCCcchhHH
Q 035493 159 FIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAE-LMNIQGNDSMNLLF 236 (305)
Q Consensus 159 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 236 (305)
.+|+.|+.. ++++..++.. ..+..+-.++.+ ....+..+...........|.+.++++.| .+. ...+
T Consensus 178 ~lp~~~~~~--~~~~~~~~~~--~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~-------~~~g 246 (400)
T PF03825_consen 178 FLPKTPPKR--SAKESVKKLL--GLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSG-------STIG 246 (400)
T ss_pred hCCCCcccc--ccCCCccccc--chHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hHHH
Confidence 678776211 1110000000 001011111111 22333333333345556677788899987 676 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 237 VTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
....+..+++++.-...+++.+|+|.|+++.++.....+=..+.+
T Consensus 247 ~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 247 ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 777788899999999999999999999999998888777665555
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=88.64 Aligned_cols=219 Identities=10% Similarity=-0.027 Sum_probs=127.9
Q ss_pred hhhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcc------hhH
Q 035493 36 VEAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKD------AWS 80 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~------~~~ 80 (305)
....+.+..|+++...|.+.. .++++....+++..+....++ ...
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 334566778999998887666 666777777777666554443 344
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhccC-CcchhhHHhHHHHHHHHHHHHHHHhh----hh-------hhhHHHHHHhHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEITP-KNVRGAFTAANQLLVASGLSVIYLVG----TV-------VSWRALALIAAV 148 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~----~~-------~~wr~~~~~~~~ 148 (305)
+.+.-.+..++.......-.++..|..+ +++|++..+....+..+|..+++.+. .. .+|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 5566677788888888888899999987 68899999999888888876665543 11 257777777666
Q ss_pred HHHHHHHHh-hcccCChHHHHHH--HHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHh-ccc
Q 035493 149 PCLLQVVGL-FFIPESPRWLKKS--LKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAA-ELM 224 (305)
Q Consensus 149 ~~~~~~~~~-~~~~es~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 224 (305)
+.++..... ...+|.++...++ .++..+...+++ .. +......+..............++.+.. |.
T Consensus 192 i~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk--------~~-~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~- 261 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQND--------QW-RIVGLLTIFNILAVCVRGGAMMYYVTWILGT- 261 (460)
T ss_pred HHHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCCh--------HH-HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-
Confidence 655555333 3455543210000 011111111111 00 1111112222221122222222222222 22
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhH
Q 035493 225 NIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDI 271 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~ 271 (305)
+ ...........+..+++.++++++.||+++|+....+..
T Consensus 262 ~-------~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~ 301 (460)
T PRK11462 262 P-------EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNA 301 (460)
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 2 223345667778889999999999999999988764443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-09 Score=93.67 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=131.3
Q ss_pred hhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcc------hhHH
Q 035493 37 EAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKD------AWSL 81 (305)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~------~~~l 81 (305)
...+.+.+|+++.++|.+.. .++.+....+++..+....++ +..+
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34566777999999987766 666777777777655544332 3345
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhcc-CCcchhhHHhHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHhHHH
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEIT-PKNVRGAFTAANQLLVASGLSVIYLVGT-----------VVSWRALALIAAVP 149 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~-----------~~~wr~~~~~~~~~ 149 (305)
.+...+.+++.....+...++..|.. ++++|.+..+.-..+.++|..+.+.+.. ..+|+....+.++.
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 56667778888888888889999998 5889999888866666665444333221 12577777666666
Q ss_pred HHHHHH-HhhcccCChHHHHHHHHHHHHHhhCCCcchhhhH----HHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHhcc
Q 035493 150 CLLQVV-GLFFIPESPRWLKKSLKLLYSALRGKTADISMES----ADIR-VGVGLMVMQPLVGSAAIACYASYIFAAAEL 223 (305)
Q Consensus 150 ~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (305)
.++..+ ..+..||.++...++.+ ++++.+..+.. ++.. .......+...........+.+++.+....
T Consensus 190 ~~~~~~~~~~~~~e~~~~~~~~~~------~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~ 263 (473)
T PRK10429 190 FIVSTIITLRNVHEVYSSDNQVSA------EGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG 263 (473)
T ss_pred HHHHHHHHHcCceecCCccccccc------cccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC
Confidence 555443 33446765321000000 00000111111 1111 122222222222233333333333333222
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHH
Q 035493 224 MNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~ 280 (305)
+. ...+.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+
T Consensus 264 ~~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 264 DA-------DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 22 344455566668889999999999999999999887776555444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-08 Score=85.04 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=86.7
Q ss_pred ccchhhh-hhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhc-chhHHHHHH
Q 035493 33 SSPVEAG-ITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSK-DAWSLYLGR 85 (305)
Q Consensus 33 ~~~~~~~-~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 85 (305)
....+|. +.+++|.++.+.+.+.+ ++..+.++..++.++.+..+ +...+.++.
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 4444444 46678999988876554 56778888888776665543 223344444
Q ss_pred HHHhhcccchhhhhhhhhhhccCCc--chhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKN--VRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALIAAVPCLLQV 154 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~~~~~~~~~~ 154 (305)
.+.++|.|...+...++++|.+|++ +|....++.....++|..++|.+...+ |||+.|.+.++..++..
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 4555666777777788999999875 688899999999999999998887544 89999988765444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=90.74 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=68.6
Q ss_pred hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHH
Q 035493 75 SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVP 149 (305)
Q Consensus 75 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~ 149 (305)
+++...++++|++.|++.+........++.|.+|++.|+...+........+..++|.+.... +|+..++...++
T Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~ 418 (490)
T PRK10642 339 SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVV 418 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 456777888999999887777777788889999999999999874333444445555554332 578777776667
Q ss_pred HHHHHHHhhcccCChHHHH
Q 035493 150 CLLQVVGLFFIPESPRWLK 168 (305)
Q Consensus 150 ~~~~~~~~~~~~es~~~~~ 168 (305)
+++..+..+++||+|+++.
T Consensus 419 ~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 419 AVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHhccccCCCC
Confidence 7776666677899998643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.3e-08 Score=84.34 Aligned_cols=208 Identities=18% Similarity=0.186 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcch----------------------
Q 035493 57 AMWLSDLFCIFGWLAIAFS--KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVR---------------------- 112 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r---------------------- 112 (305)
.+.....+..+.+.+..+. ++++...+.-++.-++.+.......+++.|..+++++
T Consensus 103 ~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (477)
T PF11700_consen 103 FLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVD 182 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHH
Confidence 5566666666666666664 3455555556666678888888899999999999888
Q ss_pred ----hhHHhHHHHHHHHHHHHHHHhhhh------------hhhHHHHHHhHHHHHHH-HHHhhcccCChHH--HHH---H
Q 035493 113 ----GAFTAANQLLVASGLSVIYLVGTV------------VSWRALALIAAVPCLLQ-VVGLFFIPESPRW--LKK---S 170 (305)
Q Consensus 113 ----~~~~~~~~~~~~~G~~~~~~i~~~------------~~wr~~~~~~~~~~~~~-~~~~~~~~es~~~--~~~---~ 170 (305)
++..+.-.....+|..+.-.+... .+-|..+.+.++.-++. ....+++||.|+. .++ -
T Consensus 183 ~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~ 262 (477)
T PF11700_consen 183 SLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY 262 (477)
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH
Confidence 899888888888887776665522 13588888877775444 4556778887641 111 0
Q ss_pred HHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHH
Q 035493 171 LKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPA 249 (305)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (305)
.+...+++.+.-++.+ +.++. ....+..+...-+.+.+......+.++ .|++. .+.........+..++|
T Consensus 263 ~~~g~~~l~~t~k~~~-~~~~~-~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~-------~~l~~~~l~~~i~a~~G 333 (477)
T PF11700_consen 263 LRFGFKRLWRTFKEIR-KLRQL-FLFLIAYFLYSDGVNTIISFAGIYATEVLGMST-------TQLIVFGLVVQIVAIIG 333 (477)
T ss_pred HHHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCH-------HHHHHHHHHHHHHHHHH
Confidence 0111122211110110 11111 345555565666677777777777774 79999 88888999999999999
Q ss_pred HHHHHHhhcccCCc--hhhhhHhHHH
Q 035493 250 IVASVLLTDKSGRR--PLLLASDIGT 273 (305)
Q Consensus 250 ~~~~~~l~d~~g~r--~~~~~~~~~~ 273 (305)
+++.+++.||+|.| +.+..+....
T Consensus 334 a~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 334 ALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 99999999999999 7766665444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-09 Score=91.92 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=93.3
Q ss_pred cchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGR 85 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 85 (305)
...+|.+.++.|.+..+.+++.+ .+..+....+++.++....++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 34456666778988888876655 11122222333344556678888899999
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHH
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLLQVV 155 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~~~~ 155 (305)
++.|++.+...+...+.+.|.+|++++++..++.+....+|..++|.+...+ +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887543 599999988776655443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.8e-08 Score=84.37 Aligned_cols=229 Identities=10% Similarity=0.061 Sum_probs=120.6
Q ss_pred hhhhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-h----hcc--hhH
Q 035493 37 EAGITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIA-F----SKD--AWS 80 (305)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~-~----~~~--~~~ 80 (305)
.+.+++..|++..+.|.+.+ .+..+.+...+...+.. . .++ ...
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 34677778999999998776 33444444443333321 1 111 223
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhccCC-cchhhHHhHHHHH-----HHHHHHHHHHhhhhh------hhHHHHHHhHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEITPK-NVRGAFTAANQLL-----VASGLSVIYLVGTVV------SWRALALIAAV 148 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~i~~~~------~wr~~~~~~~~ 148 (305)
..+...+.+++.+...+...++..|..++ ++|.+..+.-..+ ..+|..++|.+.... +|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 44455677888888887777777776654 6788776655433 234555566555332 12111122233
Q ss_pred HHHHHH-HHhhcccCChHHHHHH--HHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hccc
Q 035493 149 PCLLQV-VGLFFIPESPRWLKKS--LKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AELM 224 (305)
Q Consensus 149 ~~~~~~-~~~~~~~es~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 224 (305)
.+++.. +.....||+++...++ .++..++..+++ .. .......+.............|+++++ .|.+
T Consensus 192 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~--------~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR--------PL-FMLCIGALCVLISTFAVSASSLFYVRYVLNDT 262 (448)
T ss_pred HHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCc--------hH-HHHHHHHHHHHHHHHHHhhhheeeEeeecCCh
Confidence 333322 2234456653210000 000111111110 00 222222333333344444455666555 3554
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 225 NIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
+ ...........++.+++.++.+++.||+|+|+.+..+..+..++.+.+.
T Consensus 263 ~-------~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 263 G-------LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 4 4444444444566788889999999999999999988877766665544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=73.97 Aligned_cols=104 Identities=25% Similarity=0.315 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh--
Q 035493 59 WLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV-- 136 (305)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~-- 136 (305)
..+.....++.+...+.++++.+.+.+++.|++.+...+....++.|..|+++|++..+..+....+|..+++.+...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 32 LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 455555666666667778999999999999999999999999999999999999999999999999998888877743
Q ss_pred --hhhHHHHHHhHHHHHHHHHHh-hcccC
Q 035493 137 --VSWRALALIAAVPCLLQVVGL-FFIPE 162 (305)
Q Consensus 137 --~~wr~~~~~~~~~~~~~~~~~-~~~~e 162 (305)
.+||+.+++.+...++..+.. +..||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 112 QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 389999998877766665444 44555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-08 Score=82.96 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=150.5
Q ss_pred hhhhhhcCCchhHHHHHH-----------------------------HHHHHHHHHHHHHHHHHhhcc------hhHHHH
Q 035493 39 GITADLGLSLIEYSVFGS-----------------------------AMWLSDLFCIFGWLAIAFSKD------AWSLYL 83 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s-----------------------------~l~~~~~~~~~~~~~~~~~~~------~~~l~~ 83 (305)
.+.+.+|+++...|.+.. .++.+.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 466778999988886655 778888888888888877763 455667
Q ss_pred HHHHHhhcccchhhhhhhhhhhccC-CcchhhHHhHHHHHHHHHHHHHHHhh-----------hhhhhHHHHHHhHHHHH
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITP-KNVRGAFTAANQLLVASGLSVIYLVG-----------TVVSWRALALIAAVPCL 151 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~-----------~~~~wr~~~~~~~~~~~ 151 (305)
...+.+++.......-.++..|..+ ++||.+..+.-..+..+|..+...+. ...||+....+.++.++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7888999999998888899999875 57899999999988888866654333 13378888888887777
Q ss_pred HHHHHh-hcccCChHHHHH-H--HHHHH----HHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHH-hc
Q 035493 152 LQVVGL-FFIPESPRWLKK-S--LKLLY----SALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAA-AE 222 (305)
Q Consensus 152 ~~~~~~-~~~~es~~~~~~-~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 222 (305)
+..+.. +-.+|.+....+ + .++.. ....+++ . ........++...+.+.......++.+. .|
T Consensus 198 i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nr--------p-~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg 268 (467)
T COG2211 198 ILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNR--------P-LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLG 268 (467)
T ss_pred HHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccc--------h-HHHHHHHHHHHHHHHHHHhhhhheeEEEEcC
Confidence 766554 446664431000 0 00000 0011111 0 0222333333333333333333334333 35
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 223 LMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.++ ............+.+.+.++...+.+|+|+|+....+.++..++.+.+-+
T Consensus 269 ~~~-------l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f 321 (467)
T COG2211 269 DPE-------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321 (467)
T ss_pred ChH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence 555 55666777777777888999999999999999999998888777766653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=73.75 Aligned_cols=193 Identities=14% Similarity=0.064 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHh--HHHHHHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIA--AVPCLLQ 153 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~--~~~~~~~ 153 (305)
..+.-.+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+...+ .=|..-.+. ++..+..
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l 171 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLL 171 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999988877443 223222222 2222222
Q ss_pred HHHhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-----HHHHHHHHhhhhchhHHHHhH-HHHHHHhcccccc
Q 035493 154 VVGLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-----VGVGLMVMQPLVGSAAIACYA-SYIFAAAELMNIQ 227 (305)
Q Consensus 154 ~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 227 (305)
.+...+=.|.++... + +..++++.+..+..++.. .......+....+++..-.-+ |+=-+-.|++.
T Consensus 172 ~~ia~wg~E~r~~~~-~-----~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv-- 243 (403)
T PF03209_consen 172 NLIALWGQEPRRSRR-A-----AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSV-- 243 (403)
T ss_pred HHHHHHhcccCCccc-c-----cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCH--
Confidence 222222222211000 0 000011111111111111 112222221111111111111 22122257777
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhhc-ccCCchhhhhHhHHHHHHHHHHHHHHhh
Q 035493 228 GNDSMNLLFVTDLLTAIIQLPAIVASVLLTD-KSGRRPLLLASDIGTCLSLSIIALAFCL 286 (305)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
.+........+.+.+++-...+++.. |.++++....++....+++..+......
T Consensus 244 -----~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~ 298 (403)
T PF03209_consen 244 -----GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL 298 (403)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888889999999999988887655 6778887778887777777666654433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-07 Score=76.26 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--h-hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKD--A-WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLV 133 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 133 (305)
.+-....+..++.....++++ + +..++.-.+..++.......-.+++.+..++++-++..+.-.....+|..+.-..
T Consensus 91 ~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 91 FFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence 444445555555555666654 4 4455567888999999999999999999999888888777666555665554433
Q ss_pred h----------------------hhhhhHHHHHHhHHHHHHHH-HHhhcccCChHHH-------HH---HHHHHHHHhhC
Q 035493 134 G----------------------TVVSWRALALIAAVPCLLQV-VGLFFIPESPRWL-------KK---SLKLLYSALRG 180 (305)
Q Consensus 134 ~----------------------~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~~~~-------~~---~~~~~~~~~~~ 180 (305)
. ...+-|..+.+.++.-++.. ..++..+|.++-. .. |-.+..++.++
T Consensus 171 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~ 250 (438)
T COG2270 171 VVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRG 250 (438)
T ss_pred HHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 2 11257888888877766655 4455566544211 00 11122222222
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHH-HhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035493 181 KTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFA-AAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDK 259 (305)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 259 (305)
.+ + . ....+..+...-+.+++......+-. +.|++. .+.........+..++|+++.|++.||
T Consensus 251 ~~-~-------i-~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~-------~~lll~g~~~~vvA~lg~ii~g~Ld~r 314 (438)
T COG2270 251 RK-N-------L-VLFLIARFFYIDGVNTILAMGGVFGAADLGLSS-------TELLLIGIALSVVAALGAIIAGFLDER 314 (438)
T ss_pred cc-c-------h-HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 0 34455555566667777777777777 579999 889999999999999999999999999
Q ss_pred cCCchhhhhHhHHHHHHHH
Q 035493 260 SGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 260 ~g~r~~~~~~~~~~~~~~~ 278 (305)
+|.|+++..+.++..+.++
T Consensus 315 fg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 315 FGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred hCCceeehHHHHHHHHHHH
Confidence 9999998888776655443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=80.80 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=91.4
Q ss_pred hhh-hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhh
Q 035493 36 VEA-GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGI 90 (305)
Q Consensus 36 ~~~-~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 90 (305)
..| .+++++|.++.+.+++.+ .+..+.....+........++.+.+++.|++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344 356778999888776544 3333333333333344456778888889999998
Q ss_pred cccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHhhcccC
Q 035493 91 GLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGLFFIPE 162 (305)
Q Consensus 91 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~~~~~e 162 (305)
+.|...+....+..|..|+ +|+++.++.+....+|..+++.++ +.++|+..+++.++..++..+..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8887777778888999885 589999998887888877777766 4458999999888888777777666665
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=80.10 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh--
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG-- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~-- 134 (305)
.+..+..+..++.....+.++.+.+++.+++.|++.+..++.....+.|..|+++|+++.++.+....+|..+++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 360 (399)
T PRK05122 281 VAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGL 360 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777788888888999999999998888888888999999999999999988888877766655
Q ss_pred --hhhhhHHHHHHhHHHHHHHHHHhhcccC
Q 035493 135 --TVVSWRALALIAAVPCLLQVVGLFFIPE 162 (305)
Q Consensus 135 --~~~~wr~~~~~~~~~~~~~~~~~~~~~e 162 (305)
+..||+..+++.+...++..+....+++
T Consensus 361 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 361 VASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3448999999988877776655544444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=78.82 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=104.6
Q ss_pred ccccchhhhhhhhh-cCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 035493 31 GYSSPVEAGITADL-GLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLG 84 (305)
Q Consensus 31 ~~~~~~~~~~~~~~-~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (305)
.......|.+.++. |.++.+.++..+ .+..+..+..++.....+.++.+...+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271 (352)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444555555554 888888776555 3556777777777888888888999999
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHHhhc
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVGLFF 159 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~~~~ 159 (305)
.++.|++.+...+....++.|..|+|+|++..++.+....+|..+++.+... .+|+..+++.++..++..+...+
T Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999999998888743 48999999998888777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.2e-08 Score=88.07 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++..+.++.+++.++.++.++...+++.+++.|++.++.++...++++|++|.++|++++|+......+|.+++|.++..
T Consensus 627 ~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~ 706 (742)
T TIGR01299 627 MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGS 706 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888988888888899999998888899999999999999999999999999999999999988754
Q ss_pred h---hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 035493 137 V---SWRALALIAAVPCLLQVVGLFFIPESP 164 (305)
Q Consensus 137 ~---~wr~~~~~~~~~~~~~~~~~~~~~es~ 164 (305)
+ +.+.+|++.++..++..++..++||+.
T Consensus 707 L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 707 FVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3 446677777777777666666779864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=78.76 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT- 135 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~- 135 (305)
.+..+..+..++..+..+.++.+.+.+.+++.|++.+...+.....+.|.+|+|+|++..++.+....+|..++|.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 281 VAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred ehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777778888888889999999999888888888999999999999999999988888888887764
Q ss_pred ---hhhhHHHHHHhHHHHHHHHHHh
Q 035493 136 ---VVSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 136 ---~~~wr~~~~~~~~~~~~~~~~~ 157 (305)
..||+..|.+.+...++..+..
T Consensus 361 l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 361 LATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4489999999888776665544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-07 Score=77.66 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred cchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLG 89 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 89 (305)
....|.+.+|.|.++++.|.+.+ .+..+.+...+.....+++++.+.+++.+++.|
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 33455566779999999886655 778888899988888999999999999999999
Q ss_pred hcccchhhhhhhhhhhccCCcchhhHHhHHH-HHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHH
Q 035493 90 IGLELMTYVIPIYIAEITPKNVRGAFTAANQ-LLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 90 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~ 156 (305)
++.+...+....++.+. |+++|++..++++ ...++|..+++.++ +..|+ ..|+..+...++..+.
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99999999999999998 9989999999875 45667777777666 44465 5566666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=80.88 Aligned_cols=239 Identities=15% Similarity=0.122 Sum_probs=117.4
Q ss_pred cccccchhhhhh-hhhcCCchhHHHHHH--------------------------HHHHHHHHHHHHHHH-HHhh----cc
Q 035493 30 VGYSSPVEAGIT-ADLGLSLIEYSVFGS--------------------------AMWLSDLFCIFGWLA-IAFS----KD 77 (305)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~s~~~~~~~~s--------------------------~l~~~~~~~~~~~~~-~~~~----~~ 77 (305)
.+..-|..|..- ++-|+|.+++|.+.+ ...++.+....+... ..+. .|
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n 102 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN 102 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556555544 458999999998888 222222222222221 1221 22
Q ss_pred h-hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHH
Q 035493 78 A-WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVPCLLQ 153 (305)
Q Consensus 78 ~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~~~~~ 153 (305)
. ...+++-...|+......|+..+++.++.. +.+.-.|-.-...++|.+++..+++.+ +-+..|++....+++.
T Consensus 103 ~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il 180 (412)
T PF01306_consen 103 FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIIL 180 (412)
T ss_dssp -HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHH
Confidence 2 233344444566666666777776655542 223333444444555555555554333 5567778766665555
Q ss_pred HHHhhc-ccCChHHHHH-HHHHHHHHhhCCCc---chhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH----hcc
Q 035493 154 VVGLFF-IPESPRWLKK-SLKLLYSALRGKTA---DISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA----AEL 223 (305)
Q Consensus 154 ~~~~~~-~~es~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~ 223 (305)
.++... -||.++.... +++ +.++++. +..+..+..+ +...+........+..+-...+.++.+ .+.
T Consensus 181 ~lll~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~ 256 (412)
T PF01306_consen 181 LLLLLLLKPDVPPQAEVADAL----GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQ 256 (412)
T ss_dssp HHHHHSS---SSSSS-SSTTS----SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHcCCcCchhhhhhccc----ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 544333 3332221000 000 0000000 0011111111 233332222222233333333444443 445
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 224 MNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
++ +..+...+.-.+.+.+.-.+..++.+|+|.|+.++++..++.+=....+
T Consensus 257 g~-------~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 257 GN-------QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred Ch-------hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 55 5677788888899999999999999999999999998888877666655
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=80.10 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHH-HHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSK----DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQ-LLVASGLSVIY 131 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~ 131 (305)
++..+.++..++.......+ +++.+++.+++.|++.+...+....++.|++|+++|++..++.+ ...++|..++|
T Consensus 283 ~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp 362 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGY 362 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66777777777665555532 24567788999999999888999999999999999999999997 56788888888
Q ss_pred Hhhhh----------hhhHHHHHHhHHHHHHHHHH-hhcccCCh
Q 035493 132 LVGTV----------VSWRALALIAAVPCLLQVVG-LFFIPESP 164 (305)
Q Consensus 132 ~i~~~----------~~wr~~~~~~~~~~~~~~~~-~~~~~es~ 164 (305)
.++.. .|||..|.+.++..++..++ .+++||+.
T Consensus 363 ~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 363 ILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 77732 35999999888776666544 45677753
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=79.73 Aligned_cols=131 Identities=12% Similarity=0.037 Sum_probs=96.7
Q ss_pred cchhhhhhhh-hcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 035493 34 SPVEAGITAD-LGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSL 88 (305)
Q Consensus 34 ~~~~~~~~~~-~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 88 (305)
....|.+.++ +|.++.+.+++.+ .+..+..+..++.++..+.++.+...+..++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3345656555 8988888876655 45566666667767777778888888889999
Q ss_pred hhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHH-HHHhhcccCC
Q 035493 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQ-VVGLFFIPES 163 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~-~~~~~~~~es 163 (305)
|++.+...+...+++.|..|+++||+..++......+|..+++.+. +..|.+..++..+...++. .+....+||.
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998887788888999999999999999999888877777777766 4447788887766655444 3444556664
Q ss_pred h
Q 035493 164 P 164 (305)
Q Consensus 164 ~ 164 (305)
+
T Consensus 403 ~ 403 (417)
T PRK10489 403 R 403 (417)
T ss_pred c
Confidence 4
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=81.56 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH-HHHHHHHHHHHHHHhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA-NQLLVASGLSVIYLVG- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~- 134 (305)
.+..+..+..++..+.+++++.+.+++.+++.|++.+...+....++.|.+|++.|+...+. ++....+|..+++.+.
T Consensus 294 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G 373 (420)
T PRK09528 294 ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAG 373 (420)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHH
Confidence 66666777777778888889999999999999999888888888999999999988877554 4556667777766665
Q ss_pred ---hhhhhHHHHHHhHHHHHHHHHHh-hcccCC
Q 035493 135 ---TVVSWRALALIAAVPCLLQVVGL-FFIPES 163 (305)
Q Consensus 135 ---~~~~wr~~~~~~~~~~~~~~~~~-~~~~es 163 (305)
+..|||..|...++..++..+.. ...+++
T Consensus 374 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 374 NLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44599999998777766555443 444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=79.18 Aligned_cols=118 Identities=13% Similarity=-0.048 Sum_probs=89.5
Q ss_pred hhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHh
Q 035493 36 VEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDA--WSLYLGRCSLG 89 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G 89 (305)
..+.+.+++|.++++.+++.+ .+..+..+..++.....+.++. ..+....++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 345566778888877665444 5556666666666666666543 33446678889
Q ss_pred hcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHH
Q 035493 90 IGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQ 153 (305)
Q Consensus 90 ~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~ 153 (305)
++.+...+..+.++.|.+|+++|++..++......+|..++|.+.. ..||++.|.+.++..++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9888888888889999999999999999999999999999888764 458999998887766554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.1e-07 Score=77.53 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=92.3
Q ss_pred hhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhc
Q 035493 36 VEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIG 91 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 91 (305)
..|.+.++.|.++.+.+...+ .+..+.....++.....+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 456677778888888775544 33344444455555556667777787888889998
Q ss_pred ccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhhcc
Q 035493 92 LELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 92 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
.++..+...++..|.+|+++|++..++.+....+|..++|.+...+ +|+..++......+...+..+.+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999887554 56666666655555555444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.5e-07 Score=76.04 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=91.4
Q ss_pred hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccc
Q 035493 39 GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLEL 94 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 94 (305)
.+.+++|.++.+.+++.+ .+..+.....+......+.++.+.+.+.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888775543 34444444444444455667888888899999999888
Q ss_pred hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHHHhhcccC
Q 035493 95 MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVVGLFFIPE 162 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~~~~~~~e 162 (305)
..+....++.|..|+ +|+++.++.+....+|..++|.+.. ..||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888899998876 4679999998888888888887764 448999999988887777766665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-05 Score=60.68 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=102.7
Q ss_pred HHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHHHHH
Q 035493 13 ILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCIFGW 69 (305)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~~~~ 69 (305)
|.............| ....++...|++++.+|.|.+|...+.. ++.+|.....+|.
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333333333344444 3455567778999999999999887765 6778888888887
Q ss_pred HHHHhh-------cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh---h-
Q 035493 70 LAIAFS-------KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV---S- 138 (305)
Q Consensus 70 ~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~- 138 (305)
.....+ .++|.+.+..++.|.+.+.....+.....+.+| ++||++.|+.-...+++..+-..+...+ +
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~ 159 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP 159 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence 766544 367888888888888877777777777778998 4799999999999999887766655333 2
Q ss_pred hHHHHHHhHHHHHHHHHHhhcccCCh
Q 035493 139 WRALALIAAVPCLLQVVGLFFIPESP 164 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~~~~~~~es~ 164 (305)
-+..+.....+.++.++...++++.|
T Consensus 160 ~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 160 SSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeccC
Confidence 33344444444455455545554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=74.43 Aligned_cols=109 Identities=14% Similarity=0.047 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhh--cc-hh-HHHHHHHHHhhcccc-hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFS--KD-AW-SLYLGRCSLGIGLEL-MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIY 131 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~--~~-~~-~l~~~r~l~G~g~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 131 (305)
.++.+..+..++.+..+.. ++ .. ....+-++.+.+.+. ..+....++.|.+|+++|+++.++......+|..+++
T Consensus 338 ~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~ 417 (479)
T PRK10077 338 LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVS 417 (479)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665554432 11 11 222333444444433 2366789999999999999999999888888887764
Q ss_pred Hhh----------hhhhhHHHHHHhHHHHHHHHHHh-hcccCChH
Q 035493 132 LVG----------TVVSWRALALIAAVPCLLQVVGL-FFIPESPR 165 (305)
Q Consensus 132 ~i~----------~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~ 165 (305)
.+. +..+|++.|++.++.+++..+.. ++.||+++
T Consensus 418 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 418 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred HHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 333 24578888888777766665444 55777654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=75.15 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.+..+.....++.+...+.++.+.+.+.+++.|++.+...+.....+.|..|+++||+..+.......+|..++|.++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~ 369 (408)
T PRK09874 290 ILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAA 369 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHH
Confidence 45555556666666666778888888999999999999999999999999999999999999988888888888887743
Q ss_pred ----hhhHHHHHHhHHHHHHHHHHh
Q 035493 137 ----VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 137 ----~~wr~~~~~~~~~~~~~~~~~ 157 (305)
.||+..|++.++..++..+..
T Consensus 370 l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 370 ISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHH
Confidence 489999999888777766544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=60.96 Aligned_cols=229 Identities=15% Similarity=-0.005 Sum_probs=123.2
Q ss_pred ccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 035493 33 SSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSL 88 (305)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 88 (305)
.+|..-.+-+++|.+..|++.+.. ..+.-+++.+++++ +-..++++.++++|++.
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlg 131 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLG 131 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHH
Confidence 456555566789999999875444 55556666666664 45568999999999999
Q ss_pred hhcccchhhhhhhhhh-hcc----CCcchhhHHhHHH-HHHHHHHHHHHHhhhh----hh--hHHHHHHhHHHHHHHHHH
Q 035493 89 GIGLELMTYVIPIYIA-EIT----PKNVRGAFTAANQ-LLVASGLSVIYLVGTV----VS--WRALALIAAVPCLLQVVG 156 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~-~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~----~~--wr~~~~~~~~~~~~~~~~ 156 (305)
|++....+.+..+++. |+- |++..+...+... ...++-.+.+.++++. .+ -..+|....+..++..+.
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~ 211 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999998887763 442 2222233333222 2222223344444433 33 367888877776666544
Q ss_pred h-hcccCChHHHHH------HHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccC
Q 035493 157 L-FFIPESPRWLKK------SLKLLYSALRGKTADISMESADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGN 229 (305)
Q Consensus 157 ~-~~~~es~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (305)
. ...+|......+ +-++..+.+.+++ +....-....+.....+.....|.|.+-.+ + .+
T Consensus 212 I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~--------ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~---- 277 (354)
T PF05631_consen 212 ILKTWPENYGDTSSSSSLSGSFREAWRAILSDP--------RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EE---- 277 (354)
T ss_pred HHhcccccCCCcccccchHHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CC----
Confidence 4 446664321000 1111111121111 110222222233333333444566654411 1 11
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh-cccCCchhhhhHhHHHHHHHHH
Q 035493 230 DSMNLLFVTDLLTAIIQLPAIVASVLLT-DKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
..-+.++..+....++|+.+..++. ++....+.+.....+.++++.+
T Consensus 278 ---~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~ 325 (354)
T PF05631_consen 278 ---LPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAI 325 (354)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 2356888888899999998886654 4433334444444444444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-06 Score=71.30 Aligned_cols=122 Identities=14% Similarity=0.021 Sum_probs=86.2
Q ss_pred chhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhh
Q 035493 35 PVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGI 90 (305)
Q Consensus 35 ~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 90 (305)
...|.+.++.|.++++.++..+ .+..+..+..++..... + .......+++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 3456676777888888776544 45555555555444332 2 2334457788888
Q ss_pred cccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHHHhhc
Q 035493 91 GLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVVGLFF 159 (305)
Q Consensus 91 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~~~~~ 159 (305)
+.+...|.....+.|..|+++++...+......++|..++|.++. ..+|++.|.+.+...++..+..++
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 877888999999999999888887888877778888888887764 448999999887777666554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-06 Score=72.33 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.+..+..+..++....+++++++.+.+..++.|++.+...|...+++.|..|+++||+..++.+....+|..++|.+...
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 276 RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 34555566666666777778888888888889999888888889999999999999999999999999999999888754
Q ss_pred h-------h-hHHHHHHhHHHHHHHHHH
Q 035493 137 V-------S-WRALALIAAVPCLLQVVG 156 (305)
Q Consensus 137 ~-------~-wr~~~~~~~~~~~~~~~~ 156 (305)
+ + -...+...++.+++....
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 4 1 134444445544444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-06 Score=72.33 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=96.4
Q ss_pred cchhhhhh-hhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 035493 34 SPVEAGIT-ADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSL 88 (305)
Q Consensus 34 ~~~~~~~~-~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 88 (305)
...+|.+. +++|.++...|++.+ .+..+.+.++++.+..+++++.+...+.-++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567664 568999999887766 66778888888888899999999999999999
Q ss_pred hhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH----HHhhhhhhhHHHHHHhHHHHHHHHH
Q 035493 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI----YLVGTVVSWRALALIAAVPCLLQVV 155 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~i~~~~~wr~~~~~~~~~~~~~~~ 155 (305)
|++.....+...+.+.+..|++.||++++++......+..+| ..+++.+|-+..+.+.++..++..+
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999888889999999999999999999876665555544 4455666888888877665544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00029 Score=60.19 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
+++.+.+...+...+..+.++...+-+..++-|++.+. ..+-.+|+-...|+++-.++.+...++.-+|..++.+++..
T Consensus 73 viil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQl 151 (412)
T PF01770_consen 73 VIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQL 151 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888999999999999999999766 66677888888898888899999888888888888777754
Q ss_pred h------hhHHHHHHhHHHHHHHHHHhhcccCChH
Q 035493 137 V------SWRALALIAAVPCLLQVVGLFFIPESPR 165 (305)
Q Consensus 137 ~------~wr~~~~~~~~~~~~~~~~~~~~~es~~ 165 (305)
+ +.+...++......+..+..+++|..++
T Consensus 152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 152 LVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4 5667766666555555555566776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.1e-06 Score=72.17 Aligned_cols=133 Identities=10% Similarity=-0.005 Sum_probs=85.8
Q ss_pred cccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHh-----hc------
Q 035493 32 YSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAF-----SK------ 76 (305)
Q Consensus 32 ~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~-----~~------ 76 (305)
......|.+.+++|.+..+.++... .+..+..+..++.....+ .+
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 3344567777888888866554433 444555555555544441 11
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLL 152 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~ 152 (305)
+...+....+..+.......+....++.|.+|+++|+++.++......+|..+++.+... .+|++.|++.++.+++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL 461 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence 222333333333332233446666778999999999999999999999999988877643 4799999888887777
Q ss_pred HHHHh-hcccCCh
Q 035493 153 QVVGL-FFIPESP 164 (305)
Q Consensus 153 ~~~~~-~~~~es~ 164 (305)
..+.. ++.||++
T Consensus 462 ~~i~~~~~~~~~~ 474 (481)
T TIGR00879 462 GLIFVYFFLPETK 474 (481)
T ss_pred HHHHHheecccCC
Confidence 66554 4566644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=71.56 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=78.5
Q ss_pred cchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH--HHHHhhcchhHHHHHHH
Q 035493 34 SPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW--LAIAFSKDAWSLYLGRC 86 (305)
Q Consensus 34 ~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~--~~~~~~~~~~~l~~~r~ 86 (305)
....|. +++++|.+..+.++..+ .+.........+. ......++.....+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444554 56778999888765544 2222222222222 22233456666778888
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH-HHHHHHHhh----h------------hhhhHHHHHHhHHH
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS-GLSVIYLVG----T------------VVSWRALALIAAVP 149 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~----~------------~~~wr~~~~~~~~~ 149 (305)
+.|+...+..........|.+|+++||.+.|+.+....+ |..++|.+. + ..+|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888654444433345677999999999999999877775 655555443 3 34699999888776
Q ss_pred HHHHHHHhh
Q 035493 150 CLLQVVGLF 158 (305)
Q Consensus 150 ~~~~~~~~~ 158 (305)
.++..+...
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-06 Score=71.32 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=88.7
Q ss_pred cchhhhhh-hhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 035493 34 SPVEAGIT-ADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSL 88 (305)
Q Consensus 34 ~~~~~~~~-~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 88 (305)
....|.+. +++|.|..+.+++.+ .+.....+..+...+....++...+.+..++.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL 304 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34455544 678999888776544 44444444444455555667777777788899
Q ss_pred hhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHhhccc
Q 035493 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGLFFIP 161 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~~~~~ 161 (305)
|++.+..++...++..|..|+ ++++..+.......+|..++|.+. +..||+..++..++..++........+
T Consensus 305 G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 305 GFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 998888888888888887764 467777888777888888888776 444899999888777666655554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0002 Score=61.91 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhcccchhhhhhhhhhhccCCc--chhhHHhHHHHHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSK--DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKN--VRGAFTAANQLLVASGLSVIYL 132 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~ 132 (305)
++..|.++..+|-+..+.++ +...++++-.+.++|.|..=+...++++|.+|++ +|-...+++..+.++|..++|.
T Consensus 94 tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 88999999999999998884 7888999999999999999999999999999864 3566777788888889888888
Q ss_pred hhhhh----hhHHHHHHhHHHHHHHHHHh
Q 035493 133 VGTVV----SWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 133 i~~~~----~wr~~~~~~~~~~~~~~~~~ 157 (305)
+...+ ||+..|...++-....++..
T Consensus 174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 77544 89999988777665555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=66.57 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=91.8
Q ss_pred cchhhhhhhhhcCCchhHHHHHH----------------------------HHHHHHHHHHHHHHHHHhh----cchhHH
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS----------------------------AMWLSDLFCIFGWLAIAFS----KDAWSL 81 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s----------------------------~l~~~~~~~~~~~~~~~~~----~~~~~l 81 (305)
.+..|.+++++|+++++.+...+ -++++.++..++....+.. .+....
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 34567789999999999886666 5556666665555544443 356667
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhccC--CcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHH
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEITP--KNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVV 155 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~ 155 (305)
.+.-++..+|......++.+.+.|... +++||...+.......+|.+++..++.. .++|..|.+.+....+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 777788899999999999999999984 3346777777777777787777666633 3788888887777666654
Q ss_pred Hh-hcccC
Q 035493 156 GL-FFIPE 162 (305)
Q Consensus 156 ~~-~~~~e 162 (305)
.. +..+|
T Consensus 170 ~~~~~~~e 177 (433)
T PF03092_consen 170 VALFLLEE 177 (433)
T ss_pred HHHHhhhh
Confidence 44 33443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=67.64 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=84.5
Q ss_pred hhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhhcc
Q 035493 37 EAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCIFGWL-AIAFSKDAWSLYLGRCSLGIGL 92 (305)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~g~ 92 (305)
.|.+++++|.+..+.+++.+ .+..+..+...+.. .....++.+.+.+..++.|++.
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34456668888888776544 33334444333333 2345677788888899999998
Q ss_pred cchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHh
Q 035493 93 ELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 93 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~ 157 (305)
+...+.....+.|..| ++|+++++.......+|..+|+.++ +.+|+|..|+..++..++..+..
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 8777777788888876 5789988888777777666666665 55699999999888777766544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=68.23 Aligned_cols=80 Identities=15% Similarity=0.050 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----S-WRALALIAAVPCL 151 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~-wr~~~~~~~~~~~ 151 (305)
+.........+.+.+.+ ..+....++.|..|+++|++..++.+....+|..++|.+...+ | |+..+++.++..+
T Consensus 311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence 44444444445555544 7888999999999999999999999999999999988877443 6 9999988877766
Q ss_pred HHHHHh
Q 035493 152 LQVVGL 157 (305)
Q Consensus 152 ~~~~~~ 157 (305)
+..+..
T Consensus 390 ~~~~~~ 395 (399)
T TIGR00893 390 IGALSY 395 (399)
T ss_pred HHHHHH
Confidence 655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=67.76 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=84.8
Q ss_pred hhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhc
Q 035493 36 VEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIG 91 (305)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 91 (305)
..|.+.+|.|.++.+.+.+.+ .+..+.....++....++.++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334555678988888776655 56677777777777778889999999999999999
Q ss_pred ccchhhhhhhhhhhccCCcchhhHHhHHH-HHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHH
Q 035493 92 LELMTYVIPIYIAEITPKNVRGAFTAANQ-LLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVV 155 (305)
Q Consensus 92 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~ 155 (305)
.+...+....++.+. +++++++..+... .....|..++|.++ +.+|+ ..++..+...++.+.
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999889888888887 5566788888775 44556656666655 44466 455555555554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=72.10 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=75.4
Q ss_pred cchhhhhh-hhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh--cchhHHHHHHH
Q 035493 34 SPVEAGIT-ADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS--KDAWSLYLGRC 86 (305)
Q Consensus 34 ~~~~~~~~-~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 86 (305)
....|.+. +++|.+..+.+++.+ .+..+..+..++.+..... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34556655 588999988876665 4444444444433332222 33344445555
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHH
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVP 149 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~ 149 (305)
+.|....+..+..+.++.|.+|+++|++.+++......+|..++|.+.. .+||+..+...+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 5544434445667788999999999999999988888888888887764 45888877655443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=71.42 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDA--WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+..+.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|++.|+.++++.+....+|.+++|.+.
T Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~ 466 (505)
T TIGR00898 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466 (505)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence 5666666667777666666544 44555667777777888888899999999999999999999999999999999887
Q ss_pred hh--hhhHHHHHHhHHHHHHHHHHhhcccCCh
Q 035493 135 TV--VSWRALALIAAVPCLLQVVGLFFIPESP 164 (305)
Q Consensus 135 ~~--~~wr~~~~~~~~~~~~~~~~~~~~~es~ 164 (305)
.. .++...+.+.+...++..+..+++||+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 467 YLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 62 2566777777777777766667788864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-05 Score=68.50 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH-HHHhh----hhhhhHHHHHHhHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV-IYLVG----TVVSWRALALIAAVPCL 151 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~i~----~~~~wr~~~~~~~~~~~ 151 (305)
+.+...+..++.|.+..........+..|.+|+++||++.|+.+....+|..+ +|.+. +..||+..|++.+..++
T Consensus 346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~ 425 (452)
T PRK11273 346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 425 (452)
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHH
Confidence 44444455555555433333333456779999999999999998776666443 55544 55589999998887777
Q ss_pred HHHHHhh
Q 035493 152 LQVVGLF 158 (305)
Q Consensus 152 ~~~~~~~ 158 (305)
+..+...
T Consensus 426 ~~~~~~~ 432 (452)
T PRK11273 426 LAVILLI 432 (452)
T ss_pred HHHHHHH
Confidence 7665443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-05 Score=67.13 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=85.5
Q ss_pred cchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHH
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSK-DAWSLYLGRCSL 88 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~ 88 (305)
....|.+.+++|.+..+.+...+ .+..+..+..++.......+ +...+ .-++.
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~ 302 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC 302 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence 34455666678999888776555 44555555555554443323 22222 23467
Q ss_pred hhcccchhhhhhhhhhhccC-CcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHH-hhccc
Q 035493 89 GIGLELMTYVIPIYIAEITP-KNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLLQVVG-LFFIP 161 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~~~~~-~~~~~ 161 (305)
|++.+...+.......|..+ +++|++..++.+....++..++|.+...+ +|+..|++.+..+++.... ..+.|
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888887777777775 57789999998888888888887776443 4788888877776666544 45667
Q ss_pred CCh
Q 035493 162 ESP 164 (305)
Q Consensus 162 es~ 164 (305)
|++
T Consensus 383 ~~~ 385 (393)
T PRK09705 383 ARF 385 (393)
T ss_pred ccc
Confidence 754
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=67.52 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=103.2
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH--------------------------HHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--------------------------AMWLSDLFCIFGWLA 71 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s--------------------------~l~~~~~~~~~~~~~ 71 (305)
+++...+.+|++. +.......-++++|++..+...+.- ++..+..++.+-.+.
T Consensus 287 Lia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~ 365 (477)
T PF11700_consen 287 LIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY 365 (477)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 3333334455432 2233333455689999888642222 555555555444444
Q ss_pred HHh--------hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----h
Q 035493 72 IAF--------SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----S 138 (305)
Q Consensus 72 ~~~--------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~ 138 (305)
..+ .++-+.+.+.-++.|+..|..++...++.+|..|+++.+...|++....-....+||.+.... +
T Consensus 366 g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~ 445 (477)
T PF11700_consen 366 GLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS 445 (477)
T ss_pred HHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344 567788999999999999999999999999999999999999999999998888998876444 4
Q ss_pred hHHHHHHhHHHHHHHHHHhhcccCC
Q 035493 139 WRALALIAAVPCLLQVVGLFFIPES 163 (305)
Q Consensus 139 wr~~~~~~~~~~~~~~~~~~~~~es 163 (305)
-|+.+....++.++..++..+++++
T Consensus 446 ~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred chhHHHHHHHHHHHHHHHHhhccch
Confidence 7888888777777777776666553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=67.23 Aligned_cols=107 Identities=20% Similarity=0.096 Sum_probs=74.8
Q ss_pred hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHhhccc
Q 035493 39 GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW-LAIAFSKDAWSLYLGRCSLGIGLE 93 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~g~g 93 (305)
.+.+++|.+..+.+++.+ .+..+.....+.. ......++.+.+.+..++.|+..+
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 455678999888876554 3333333322221 222334566677777788887777
Q ss_pred chhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----h-hHHHHHH
Q 035493 94 LMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----S-WRALALI 145 (305)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~-wr~~~~~ 145 (305)
...+....++.|.+|+++|+++.|+.+....+|..++|.+...+ | |+..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 77888889999999999999999999888888888888877444 5 6655544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.5e-05 Score=67.70 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHh---------hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH
Q 035493 59 WLSDLFCIFGWLAIAF---------SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129 (305)
Q Consensus 59 ~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 129 (305)
.+|.++.+++....++ ..|++.+++..++.|+|+....|...+++.|..|++.||++++++.....+|..+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665554 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q 035493 130 IYLVGTVV----SWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 130 ~~~i~~~~----~wr~~~~~~~~~~~~~~~~~ 157 (305)
++.+.... +|...|...++..++..+..
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 98877543 68877777666655554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=67.50 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=81.1
Q ss_pred chhhhhhhh-hcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Q 035493 35 PVEAGITAD-LGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKD-AWSLYLGRCSL 88 (305)
Q Consensus 35 ~~~~~~~~~-~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~ 88 (305)
...|.+.++ +|.+..+.+++.+ .+..+..+.+++.....+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455666554 7888888775544 444555566666666666664 88888999999
Q ss_pred hhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
|++.+...+....++.|..|+++|++..++.+....+|..+++.+...
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.4e-05 Score=65.70 Aligned_cols=87 Identities=13% Similarity=0.286 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHH-HHHHHHHHHHHHhhhhh------hhHHHHHHhHHHH
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQ-LLVASGLSVIYLVGTVV------SWRALALIAAVPC 150 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~------~wr~~~~~~~~~~ 150 (305)
...+.+..++.|++.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+...+ +|+..+...++..
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4444556677788888888888999999999999988888854 34457777777666433 4888888777777
Q ss_pred HHHHHHhhcccCCh
Q 035493 151 LLQVVGLFFIPESP 164 (305)
Q Consensus 151 ~~~~~~~~~~~es~ 164 (305)
++..+..+.++|++
T Consensus 423 ~i~~v~~~~~~~~~ 436 (438)
T PRK09952 423 LISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHccccc
Confidence 77766666667643
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-05 Score=65.40 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=83.6
Q ss_pred cchhhhhhhhhcCCchhHHHHHH------------------------HH-HHHHHHHHHHHHHHHh-----hcchhHHHH
Q 035493 34 SPVEAGITADLGLSLIEYSVFGS------------------------AM-WLSDLFCIFGWLAIAF-----SKDAWSLYL 83 (305)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~~~~~s------------------------~l-~~~~~~~~~~~~~~~~-----~~~~~~l~~ 83 (305)
....|.+.+++|.+..+.+++.+ .+ ..+.+...++.....+ .++.+...+
T Consensus 242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 44567777888998888665433 22 2222222332222221 245667778
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHHHHHHhhc
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLLQVVGLFF 159 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~~~~~~~~ 159 (305)
..++.|++.+...+. ...+.|.. +++|+++.++.+....+|..++|.+.. ..||+..+++.++..++..+...+
T Consensus 322 ~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 322 IAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888999988776554 45566764 468999999999999999888888773 348999999888777666655444
Q ss_pred c
Q 035493 160 I 160 (305)
Q Consensus 160 ~ 160 (305)
+
T Consensus 400 ~ 400 (402)
T TIGR00897 400 I 400 (402)
T ss_pred h
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.6e-05 Score=64.86 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-cchhHHH----HHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHH-HHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFS-KDAWSLY----LGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQL-LVASGLSVI 130 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~ 130 (305)
++.++.+..++=..+.+.. ++.+... +...++|+..+.....+..++.|..|++.|+++.+++.. ..++|..++
T Consensus 275 ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 275 LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 6777777777766677776 4544433 335679999999999999999999999999999998865 467888888
Q ss_pred HHhhhhh----------hhHHHHHHhHHHHHHHHHHh-hcccC
Q 035493 131 YLVGTVV----------SWRALALIAAVPCLLQVVGL-FFIPE 162 (305)
Q Consensus 131 ~~i~~~~----------~wr~~~~~~~~~~~~~~~~~-~~~~e 162 (305)
..+++.+ .|...+.+.+...++..+++ .+.+|
T Consensus 355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7777443 46667777777666655443 44554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.4e-05 Score=67.47 Aligned_cols=104 Identities=13% Similarity=-0.044 Sum_probs=77.0
Q ss_pred ccchhhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHH
Q 035493 33 SSPVEAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCIFGWLAIA-FSKDAWSLYLGRCSL 88 (305)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~ 88 (305)
.....|.+.+++|.+..+.++..+ ....+..+..+...+.. ..++.+...+..++.
T Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (398)
T TIGR00895 269 LTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIA 348 (398)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 344556778888988888775544 22222222222222222 256777778888999
Q ss_pred hhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 89 GIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 89 G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
|++.+...+...+++.|.+|+++|+++.++......+|..++|.+...
T Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 349 GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999987653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=67.90 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=58.2
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHH-HHHHHHHHHHHHHhh----hhhh-hHHHHHHhHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAAN-QLLVASGLSVIYLVG----TVVS-WRALALIAAVP 149 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~i~----~~~~-wr~~~~~~~~~ 149 (305)
++.+.+....++.|++.+...+...+++.|.+|+++|+++.++. +....+|..++|.+. +..| |+..++.....
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 310 GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 46677777889999998899999999999999999999998874 455566766666665 3445 88877766554
Q ss_pred HH
Q 035493 150 CL 151 (305)
Q Consensus 150 ~~ 151 (305)
.+
T Consensus 390 ~l 391 (394)
T TIGR00883 390 AL 391 (394)
T ss_pred HH
Confidence 43
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=50.12 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=56.4
Q ss_pred HHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhH
Q 035493 198 LMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDI 271 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~ 271 (305)
...+..+.+...+.-|.|.++++.|+++ .+.+....+..+..+++.++.|.++||.++++.......
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~-------~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSP-------SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3444455556677778899999999999 999999999999999999999999999999988776543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.7e-05 Score=66.59 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=74.6
Q ss_pred cchhhhhhh-hhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh---cchhHHHHHH
Q 035493 34 SPVEAGITA-DLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS---KDAWSLYLGR 85 (305)
Q Consensus 34 ~~~~~~~~~-~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r 85 (305)
....|.+.+ .+|.++.+.++... ++..+..+..++..+..+. ++.+.+.+.-
T Consensus 281 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (471)
T PRK10504 281 PFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVL 360 (471)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 344555544 47888777765443 5556666666665555443 3344455567
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++.|++.+...+.......+..|+++|+...+..+....+|..+++.+...
T Consensus 361 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 411 (471)
T PRK10504 361 FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 788999888888899999999999999999999999988888888877643
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=71.08 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=117.3
Q ss_pred hhhhcccccccchhhhhhhhhcCCchhHHHHHH--------------------------HHHHHHHHHHHHHHHHHhhcc
Q 035493 24 VAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS--------------------------AMWLSDLFCIFGWLAIAFSKD 77 (305)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s--------------------------~l~~~~~~~~~~~~~~~~~~~ 77 (305)
.............+|...++.+.+..+.+.+.+ +..++.+..+++...+.++++
T Consensus 308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~ 387 (509)
T KOG2504|consen 308 LFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT 387 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334445566778888899999999887777 677888888888889999999
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHH
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLL 152 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~ 152 (305)
++.+...-.+.|++.|.........+.|..+.++-..+.|+.....+++..++|.++..+ +|...|+..+...++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~ 467 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL 467 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence 999999999999999999999888999999999999999999999999999999998655 599999999888877
Q ss_pred HHHHhhccc
Q 035493 153 QVVGLFFIP 161 (305)
Q Consensus 153 ~~~~~~~~~ 161 (305)
....++..|
T Consensus 468 s~~~~~~~~ 476 (509)
T KOG2504|consen 468 SAVLLLILR 476 (509)
T ss_pred HHHHHHHhH
Confidence 776666555
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.2e-05 Score=64.49 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFS-KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~- 134 (305)
.+..+..+..++.....++ ++.+.+.+..++.|+|.+...|.....+.|..|++.|+.+.+..+ ...+|..++|.++
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G 354 (395)
T PRK10054 276 LMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSG 354 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHH
Confidence 5566666677776666654 577777788999999998888888899999999999999888654 3446666666655
Q ss_pred ---hhhhhHHHHHHhHHHHHHHHHH-hhcccCCh
Q 035493 135 ---TVVSWRALALIAAVPCLLQVVG-LFFIPESP 164 (305)
Q Consensus 135 ---~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~ 164 (305)
+..|-+..|++.+....+..++ ....+|.|
T Consensus 355 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 355 VILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 4457777777765554444333 34455544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.6e-05 Score=63.88 Aligned_cols=149 Identities=19% Similarity=0.130 Sum_probs=111.1
Q ss_pred HHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH
Q 035493 14 LSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW 69 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~ 69 (305)
...++.+-..+.+|.+... ......-++++|++..+..+++- ++..+.++..+.+
T Consensus 254 i~~FLiA~~~~~DGv~til-~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 254 LVLFLIARFFYIDGVNTIL-AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred hHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 3445555555666664321 22222234589999999765443 6777777777777
Q ss_pred HHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHH
Q 035493 70 LAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALAL 144 (305)
Q Consensus 70 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~ 144 (305)
+...+...-..+.+.-.+.|...|+.+..+-++.++..|++|-++..|+++...-.+..++|.+-..+ +-|..+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 77777766667777888999999999999999999999999999999999999999999998876444 5777777
Q ss_pred HhHHHHHHHHHHhhcccCC
Q 035493 145 IAAVPCLLQVVGLFFIPES 163 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~es 163 (305)
...++..+..+...++|+.
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 7777666777777777764
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.6e-05 Score=64.05 Aligned_cols=100 Identities=9% Similarity=0.082 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH-HHHHHHHHHHHHHHhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA-NQLLVASGLSVIYLVG- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~- 134 (305)
.+.++..+.+++..+...++|.+.+++.+++.|++..........+..|..++|.++...+. .+....+|..+++.+.
T Consensus 286 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 56666777777777767788999899999999999777666677777888888877776555 5566777777776555
Q ss_pred ---hhhhhHHHHHHhHHHHHHHHHH
Q 035493 135 ---TVVSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 135 ---~~~~wr~~~~~~~~~~~~~~~~ 156 (305)
+..||+..|.+.++..++..+.
T Consensus 366 ~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 366 NMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4558999999988776665443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=72.75 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=86.3
Q ss_pred hhhhhhcCCch-hHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhccc
Q 035493 39 GITADLGLSLI-EYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLE 93 (305)
Q Consensus 39 ~~~~~~~~s~~-~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 93 (305)
.+.+++|.+.. +.+++.+ .+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45667888888 7765544 4556666666777777777888888889999999999
Q ss_pred chhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHH
Q 035493 94 LMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLL 152 (305)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~ 152 (305)
...+...+++.+..|+++||++.++.+....+|..+++.++..+ ++...+++.+...++
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99998999999999999999999999988888887766665333 455556555544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-05 Score=64.85 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHH
Q 035493 81 LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 81 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~ 156 (305)
.....+..|++.............|.+|+++|++..|+.+....+|..++|.+. +..||+..|+..++..++..+.
T Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~ 419 (434)
T PRK11663 340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL 419 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 333444445433222223345678999999999999999999999999988766 3448999999888887776554
Q ss_pred h
Q 035493 157 L 157 (305)
Q Consensus 157 ~ 157 (305)
.
T Consensus 420 ~ 420 (434)
T PRK11663 420 L 420 (434)
T ss_pred H
Confidence 4
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=60.47 Aligned_cols=78 Identities=10% Similarity=-0.009 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhhhhhccCC-cchhhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHHHHH
Q 035493 78 AWSLYLGRCSLGIGLELMTYVIPIYIAEITPK-NVRGAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVPCLL 152 (305)
Q Consensus 78 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~~~~ 152 (305)
...+.....+.+++.+...+.......+..++ +++++..+..+...++|..++|.++. ..|++..|...++..++
T Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 33444555666777777778788887787776 78899999999999999999888874 44889999888776666
Q ss_pred HHH
Q 035493 153 QVV 155 (305)
Q Consensus 153 ~~~ 155 (305)
...
T Consensus 383 a~~ 385 (390)
T TIGR02718 383 AIL 385 (390)
T ss_pred HHH
Confidence 543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00068 Score=60.66 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKD---------AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGL 127 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 127 (305)
.+.++.++.+++....+..++ .+.+...+++.|+|+....|...+++.+..|++.||+++|.+.....+|.
T Consensus 352 ~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~ 431 (500)
T PRK09584 352 KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA 431 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 567777888888777666644 45788899999999999999999999999999999999999988888888
Q ss_pred HHHHHhhhhh--------------hhHHHHHHhHHHHHHHH
Q 035493 128 SVIYLVGTVV--------------SWRALALIAAVPCLLQV 154 (305)
Q Consensus 128 ~~~~~i~~~~--------------~wr~~~~~~~~~~~~~~ 154 (305)
.++..+.... +.++.|...++.+++..
T Consensus 432 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 432 LIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 8776665311 25677776666655444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=71.97 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVP 149 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~ 149 (305)
++.+.+.+..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++...+ +....+++.+..
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67777888899999999999999999999999999999999999999888888888776433 455555554444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-05 Score=67.24 Aligned_cols=69 Identities=13% Similarity=-0.081 Sum_probs=55.1
Q ss_pred chhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 206 GSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 206 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
..+....+.|.+.++.|++. .+.+.......++..++.++.|++.||+|||+.+..+.+..+++.+..+
T Consensus 51 ~~~~~~~~~~~l~~~~gls~-------~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 119 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTK-------SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS 119 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 34445556677778889988 8888888888889999999999999999999998887777666655444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00055 Score=60.07 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhhcccchhhhhhhhhhhccC-------CcchhhHHhHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFS-KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITP-------KNVRGAFTAANQLLVASGLS 128 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~ 128 (305)
.+..+..+..++.+...+. ++.+.+.+..++.|++.+...+...++++|..| ++++|...++.+....+|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~ 368 (437)
T TIGR00792 289 LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA 368 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence 5666666666666655554 456677788889999999999999999988865 45679999999988888888
Q ss_pred HHHHhhh
Q 035493 129 VIYLVGT 135 (305)
Q Consensus 129 ~~~~i~~ 135 (305)
+++.+..
T Consensus 369 lg~~i~g 375 (437)
T TIGR00792 369 LAGFLVG 375 (437)
T ss_pred HHHHHHH
Confidence 8877663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00045 Score=59.88 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=79.2
Q ss_pred hhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhhcc
Q 035493 37 EAGITADLGLSLIEYSVFGS-----------------------AMWLSDLF-CIFGWLAIAFSKDAWSLYLGRCSLGIGL 92 (305)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~g~ 92 (305)
.|.+.+++|.+.++.+...+ .+..+..+ ......+....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46677788999888776444 22333333 2222333345567778888899999999
Q ss_pred cchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHH
Q 035493 93 ELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQV 154 (305)
Q Consensus 93 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~ 154 (305)
+...+...+++.+..| +++++..+.......+|..+|+.++ +..|++..++..+...++..
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 9999988889998887 4466666666666666766666665 44588888888766554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00066 Score=59.38 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=35.5
Q ss_pred chhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh
Q 035493 94 LMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV 137 (305)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 137 (305)
+..+..+.++.|.+|+++|+++.|+......+|..++|.+...+
T Consensus 337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred cHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 33455667889999999999999999888888888888876444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=59.90 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh-h-hhHHHH
Q 035493 66 IFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV-V-SWRALA 143 (305)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~-~-~wr~~~ 143 (305)
.+.....++.++.....+.-.+.|++....++...++.+|.+|++.|+++.|+.+....+|...+|.+... . +-+..|
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f 347 (368)
T TIGR00903 268 AAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYF 347 (368)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33333444444554445556677777777778888999999999999999999999999998888776632 2 667777
Q ss_pred HHhHHHHHHHHHHhhcccC
Q 035493 144 LIAAVPCLLQVVGLFFIPE 162 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~e 162 (305)
.+.+++.++..+....+++
T Consensus 348 ~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 348 TFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 7777776666555444444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=63.31 Aligned_cols=121 Identities=14% Similarity=0.145 Sum_probs=77.1
Q ss_pred hhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHH---HHhh-cchhHHHHHH---
Q 035493 38 AGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLA---IAFS-KDAWSLYLGR--- 85 (305)
Q Consensus 38 ~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~---~~~~-~~~~~l~~~r--- 85 (305)
|.+.+++|.++++.+++.+ .+..+.....+..+. .++. ++.+.+.+.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4566778999988876642 333333333333222 2333 4555555444
Q ss_pred -HHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHHHHHHHhh
Q 035493 86 -CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALALIAAVPCLLQVVGLF 158 (305)
Q Consensus 86 -~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~wr~~~~~~~~~~~~~~~~~~ 158 (305)
+..|++.+...+....++.|..|.++++...+....+...+..++..+.+.+||+..|.+.+..+++..+...
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888887776655554444444455666666788999999998888877765543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=61.72 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=84.1
Q ss_pred hhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHH---HHhh-cchhHHHHHHHH
Q 035493 37 EAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLA---IAFS-KDAWSLYLGRCS 87 (305)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~---~~~~-~~~~~l~~~r~l 87 (305)
.|.+.+++|.+.++.++..+ .+..+..+..++... .+.. ++...+...-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34456778999998876642 233333332332221 2232 355455556666
Q ss_pred HhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHhhcccCC
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGLFFIPES 163 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~~~~~es 163 (305)
+.++.|...+...++..|..+++.++...++.+...++|..+++.+. +..||+..|.+.++.+++..+....++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666677788888999999999999999888888877665554 44589999999888888877666555543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00051 Score=61.56 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=53.3
Q ss_pred hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh--------------hhhHHHHHHhHHHHHHHHHHhhcc
Q 035493 95 MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV--------------VSWRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~--------------~~wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
..+....+.+|.+|++.|++..++.+....+|..+++.+... .+++..|++.++..++..+..+++
T Consensus 409 ~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~l 488 (502)
T TIGR00887 409 PNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLI 488 (502)
T ss_pred CCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEe
Confidence 345566778999999999999999999999998888776532 234567777777766665556678
Q ss_pred cCChH
Q 035493 161 PESPR 165 (305)
Q Consensus 161 ~es~~ 165 (305)
||++.
T Consensus 489 pEt~~ 493 (502)
T TIGR00887 489 PETKG 493 (502)
T ss_pred ccCCC
Confidence 98754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=60.43 Aligned_cols=106 Identities=13% Similarity=0.215 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHH-HHHHHHHHHHHHHhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAAN-QLLVASGLSVIYLVG- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~i~- 134 (305)
.++++..+..+=..+++++++.+.+.+.+.+.|+-.+........|+++.+|+|-.+....+. +.+.++|..+.+.++
T Consensus 291 ~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 291 LLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777888888888889999999999999999999999999999999999999988776666553 566667776665555
Q ss_pred ---hhhhhHHHHHHhHHHHHHHHHH-hhcccC
Q 035493 135 ---TVVSWRALALIAAVPCLLQVVG-LFFIPE 162 (305)
Q Consensus 135 ---~~~~wr~~~~~~~~~~~~~~~~-~~~~~e 162 (305)
+.+|.+..|++.+.+.+...+. .+.+++
T Consensus 371 ~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 371 YLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 4458998998877776555544 344544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00081 Score=59.01 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcc--cchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGL--ELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~--g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+........+......+.. +|.+. +.|+.. +.......++++|....++|....++.......+..++|.++
T Consensus 94 ~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~ 168 (463)
T KOG2816|consen 94 VLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALG 168 (463)
T ss_pred hHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555555554444 33333 444433 345677789999999999999999999998888888888877
Q ss_pred hhh----hhHHHHHHhHHHHHHHHH-HhhcccCChHHHHHHHHHHHHHhhCCCc------ch----hh-hHHHHHHH-HH
Q 035493 135 TVV----SWRALALIAAVPCLLQVV-GLFFIPESPRWLKKSLKLLYSALRGKTA------DI----SM-ESADIRVG-VG 197 (305)
Q Consensus 135 ~~~----~wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~------~~----~~-~~~~~~~~-~~ 197 (305)
... |.-.+|.+..+..++..+ ...++||+-+...++. ...++...... +. .+ ..++..+. ..
T Consensus 169 ~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l 247 (463)
T KOG2816|consen 169 GYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLL 247 (463)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccccCCCcccchhhhhhhhhhcccCCCccchHHHH
Confidence 544 677788887777666664 4467888754211110 00000000000 00 00 00000011 11
Q ss_pred HHHHhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHH-HhhcccCCchhhhhHhHHHHH
Q 035493 198 LMVMQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASV-LLTDKSGRRPLLLASDIGTCL 275 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~g~r~~~~~~~~~~~~ 275 (305)
...+....-.....-..+.+++. .++++ ++.+......+....++.++.. .+...++.|+....|.....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~-------~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~ 320 (463)
T KOG2816|consen 248 VAFLSSLPEAGGASDVLLLYLKAKFGWNK-------KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL 320 (463)
T ss_pred HHHHHHHHHhcCceeEEEEEEeeecCcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH
Confidence 11111111000000001122222 47777 7788788888888888888776 777888988877777777777
Q ss_pred HHHHHHHH
Q 035493 276 SLSIIALA 283 (305)
Q Consensus 276 ~~~~~~~~ 283 (305)
.....++.
T Consensus 321 ~~~~~af~ 328 (463)
T KOG2816|consen 321 QLLLFAFA 328 (463)
T ss_pred HHHHHHHh
Confidence 66666643
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00043 Score=59.94 Aligned_cols=110 Identities=10% Similarity=-0.003 Sum_probs=75.8
Q ss_pred hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccc
Q 035493 39 GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLEL 94 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~ 94 (305)
..++.+|.++.+.|++.+ .+..+. +.++......+.++++...+.-++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 356678988888876655 333333 3333334445567777777788899999888
Q ss_pred hhhhhhhhhhhccCCcc-hhhHHhHHHHHHHHHHHHHHHhhhhh---h--hHHHHHHhHHH
Q 035493 95 MTYVIPIYIAEITPKNV-RGAFTAANQLLVASGLSVIYLVGTVV---S--WRALALIAAVP 149 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~~~---~--wr~~~~~~~~~ 149 (305)
..+...+.+.|..|++. +|++.++.+....+|..++..+.... | ++..+...+.+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88888888888766654 79999999999999888887776433 4 44444444444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0074 Score=52.63 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+.++...+.......-+ +|-+.++++-.+.|+|.+..+..--.|++|..+++++.+..++.......+..+|..+.
T Consensus 82 ~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 82 ALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 555555555555544444 45667788999999999999999999999999999999999999888888888886655
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00038 Score=61.00 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHHHHH-HhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHH
Q 035493 214 ASYIFA-AAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIAL 282 (305)
Q Consensus 214 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 282 (305)
.+.+-+ +.|+++ .+.+.......+...+.++..|++.||+|.|+....+..+..+..+..++
T Consensus 57 ~~~~~~~~~~ls~-------~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~ 119 (462)
T PRK15034 57 TVNLNKIGFNFTT-------DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGI 119 (462)
T ss_pred HHHhhhhhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 334434 578888 89999999999999999999999999999999999988888777766654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00033 Score=61.94 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=60.2
Q ss_pred hhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc-CCchhhhhHhHHHHHHHHHH
Q 035493 203 PLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS-GRRPLLLASDIGTCLSLSII 280 (305)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~r~~~~~~~~~~~~~~~~~ 280 (305)
....++.+..+.|.++++ .|+++ .+++...........++.+++|+++||+ ||||.+..+.++..++.+.+
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgls~-------~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll 93 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKYDD-------NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL 93 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence 334567778888988876 58998 8888888888899999999999999999 99999999888887776655
Q ss_pred H
Q 035493 281 A 281 (305)
Q Consensus 281 ~ 281 (305)
+
T Consensus 94 ~ 94 (493)
T PRK15462 94 G 94 (493)
T ss_pred H
Confidence 4
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0029 Score=55.87 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhcccchhhhhhhhhhhccCCc-------chhhHHhHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSK--DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKN-------VRGAFTAANQLLVASGL 127 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~ 127 (305)
.+..+..+..++.+...+.+ +++.+.+..++.|+|.+...+...+..+|..|.+ ++|...+..+....+|.
T Consensus 296 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ 375 (448)
T PRK09848 296 TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ 375 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence 56667777777766666643 5677777888999999999999999998888754 35888899988888888
Q ss_pred HHHHHhh
Q 035493 128 SVIYLVG 134 (305)
Q Consensus 128 ~~~~~i~ 134 (305)
.+++.+.
T Consensus 376 aig~~i~ 382 (448)
T PRK09848 376 AIGGSIP 382 (448)
T ss_pred HHHHHHH
Confidence 8877765
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=60.77 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=67.5
Q ss_pred ccchhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhh-----------c
Q 035493 33 SSPVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFS-----------K 76 (305)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~-----------~ 76 (305)
.....|.+.+++|.++++.+.+.+ .+..+.++..++.....+. +
T Consensus 228 ~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFP 307 (356)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 344555565668988888764332 4555555555554444332 3
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVA 124 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 124 (305)
+.+.+....++.|++.+...+...+++.|.+|+++||+..++.+...+
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 457778889999999999999999999999999999999999877654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00062 Score=59.86 Aligned_cols=76 Identities=9% Similarity=-0.073 Sum_probs=62.3
Q ss_pred HHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHH
Q 035493 198 LMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSL 277 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~ 277 (305)
..++.............|.+-++.|.++ .+.+.......++..++.+..|.+.||+|||+.+..+..+..++.
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~-------~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTN-------FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3333333345566667788877789999 899999999999999999999999999999999999988888877
Q ss_pred HHH
Q 035493 278 SII 280 (305)
Q Consensus 278 ~~~ 280 (305)
+.+
T Consensus 106 ~l~ 108 (438)
T PRK10133 106 ALF 108 (438)
T ss_pred HHH
Confidence 654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=59.84 Aligned_cols=80 Identities=15% Similarity=-0.074 Sum_probs=63.6
Q ss_pred HHHHHHhhhhchhHHHHhHHH-HHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 196 VGLMVMQPLVGSAAIACYASY-IFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
.....+..+........+.|. +.++.|+++ .+.+.......++..++.++.|+++||+|||+.+..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 78 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLST-------AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLA 78 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCH-------HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 344444444455666677785 556689999 899999999999999999999999999999999999888887
Q ss_pred HHHHHHHH
Q 035493 275 LSLSIIAL 282 (305)
Q Consensus 275 ~~~~~~~~ 282 (305)
++.+.++.
T Consensus 79 i~~~~~~~ 86 (366)
T TIGR00886 79 IPCLWAGL 86 (366)
T ss_pred HHHHHHHH
Confidence 77766654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00032 Score=60.03 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRAL 142 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~ 142 (305)
+.....+..++.|+...+..+....+..|..|+++|+++.++.+....+|..++|.+. +..||++.
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 4455566677778766666666677889999999999999999998888888887765 34477764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=54.41 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=91.5
Q ss_pred ccccccchhhhhhhhhcCCchhHHHHHH-----------------------HHHHHHHHHHHHHHHHHh-hcchhHHHHH
Q 035493 29 SVGYSSPVEAGITADLGLSLIEYSVFGS-----------------------AMWLSDLFCIFGWLAIAF-SKDAWSLYLG 84 (305)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s-----------------------~l~~~~~~~~~~~~~~~~-~~~~~~l~~~ 84 (305)
....++.+.|.+++..|.|.+..+++.- .+.....+..+......+ .++.+...+.
T Consensus 227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~ 306 (394)
T COG2814 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALAL 306 (394)
T ss_pred hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455677788899999999988875543 555554555555544444 4556666666
Q ss_pred HHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhHHHHHHHHHHhh
Q 035493 85 RCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAAVPCLLQVVGLF 158 (305)
Q Consensus 85 r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~~~~~~~~~~~~ 158 (305)
-++.|++.......-...++| ..||.+..+.+++...+++|..+|..++ +..|++...++.++..++.....+
T Consensus 307 ~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 307 LFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 777788776666666666677 4456789999998888888877777776 456899999999888877765543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0032 Score=52.49 Aligned_cols=125 Identities=18% Similarity=0.098 Sum_probs=86.2
Q ss_pred ccchhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 035493 33 SSPVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCS 87 (305)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 87 (305)
.-.-+|.+-.|-|+|..+.|++.+ ........+.+|.....+.+.-..+.- -++
T Consensus 227 ~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~l 305 (395)
T COG2807 227 VIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALL 305 (395)
T ss_pred HHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHH
Confidence 344578899999999999997777 555566666666666667665433333 489
Q ss_pred HhhcccchhhhhhhhhhhccCCcch-hhHHhHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHHHhh
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVR-GAFTAANQLLVASGLSVIYLVGTVV-----SWRALALIAAVPCLLQVVGLF 158 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~-----~wr~~~~~~~~~~~~~~~~~~ 158 (305)
.|+|.|+.++.+...+.+..++.++ ++..++.+....+=...+|.+...+ +|+...+..+...+...+.-+
T Consensus 306 lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 306 LGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765443 4445555444443344566666444 799988887776666554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=59.52 Aligned_cols=81 Identities=7% Similarity=-0.024 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHH
Q 035493 195 GVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTC 274 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~ 274 (305)
...+.++..........+..|.+.++.|++. .+.+...+...++..++.+..|++.||+|||+.+..+..+..
T Consensus 12 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-------~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 12 FLFILFIFSFLDRINIGFAGLTMGKDLGLSA-------TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 3344444444444555666676667789998 899999999999999999999999999999999988888877
Q ss_pred HHHHHHHH
Q 035493 275 LSLSIIAL 282 (305)
Q Consensus 275 ~~~~~~~~ 282 (305)
++.+..++
T Consensus 85 ~~~~~~~~ 92 (412)
T TIGR02332 85 IASTATMF 92 (412)
T ss_pred HHHHHHHH
Confidence 77766553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00067 Score=58.69 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=61.2
Q ss_pred HHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHH
Q 035493 198 LMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSL 277 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~ 277 (305)
...+....+........|.+.++.|.++ .+.+.......++..++.++.|+++||+|||+.+..+.....++.
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASE-------AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 3334444445555567788888889988 888889999999999999999999999999999998887777666
Q ss_pred HHHH
Q 035493 278 SIIA 281 (305)
Q Consensus 278 ~~~~ 281 (305)
....
T Consensus 83 ~~~~ 86 (392)
T PRK10473 83 LLCS 86 (392)
T ss_pred HHHH
Confidence 5554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00022 Score=60.40 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=72.6
Q ss_pred ccchhhhh-hhhhcCC-chhHHHHHH------------------------HHHHHHHHHHHHHHHHH---hhcchhHHHH
Q 035493 33 SSPVEAGI-TADLGLS-LIEYSVFGS------------------------AMWLSDLFCIFGWLAIA---FSKDAWSLYL 83 (305)
Q Consensus 33 ~~~~~~~~-~~~~~~s-~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~---~~~~~~~l~~ 83 (305)
.....|.+ .+++|.+ ..+.++..+ ..........++..... ..++....++
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45556664 8889998 677764443 22223333333333222 2345567777
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHH
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIY 131 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 131 (305)
.-++.|++.+...+....++.|..|+++||++.++.+...++|..++|
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 888999999999999999999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=56.09 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=43.6
Q ss_pred cccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH-HHHHHHHhhhhh---h-hHHHHHHhHHHHHHHHHHhhcccC
Q 035493 91 GLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS-GLSVIYLVGTVV---S-WRALALIAAVPCLLQVVGLFFIPE 162 (305)
Q Consensus 91 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~---~-wr~~~~~~~~~~~~~~~~~~~~~e 162 (305)
+.+...+....+..|.+|+|.|+.+.|+.+..... .....|.+...+ | |...++..++..++..+..+++++
T Consensus 349 ~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 349 IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344455667889999999999999998755443 222344444322 4 555666666666655555444443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=60.33 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHH-HHHHHHhh----hhhhhHHHHHHhHHHHHHH
Q 035493 79 WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASG-LSVIYLVG----TVVSWRALALIAAVPCLLQ 153 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~i~----~~~~wr~~~~~~~~~~~~~ 153 (305)
+......+..|++..+..........|.+|+++|+.+.|+.+.....| ..++|.+. +..||...+++.....++.
T Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~ 425 (438)
T TIGR00712 346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 425 (438)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHH
Confidence 333344455555433322222345779999999999999987665554 34555544 5558999988776665555
Q ss_pred HH-HhhcccCCh
Q 035493 154 VV-GLFFIPESP 164 (305)
Q Consensus 154 ~~-~~~~~~es~ 164 (305)
.+ .....||++
T Consensus 426 ~~~~~~~~~~~~ 437 (438)
T TIGR00712 426 VILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHhhcc
Confidence 43 445566643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00067 Score=60.38 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=76.3
Q ss_pred hhhhh-hhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHh----hcchhHHHHHHH
Q 035493 36 VEAGI-TADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAF----SKDAWSLYLGRC 86 (305)
Q Consensus 36 ~~~~~-~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~ 86 (305)
..|.+ ++.+|.++.+.++... .+..+..+..++.....+ ..+++.+....+
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQF 356 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 44544 4557888888876544 555666666666665552 134566777788
Q ss_pred HHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 87 SLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 87 l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
+.|+|.+...+.......|..|+++|+.+.++.+....+|..+++.+...
T Consensus 357 l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 357 IRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777878888999999999999999999999998877644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0024 Score=55.56 Aligned_cols=113 Identities=17% Similarity=0.103 Sum_probs=75.6
Q ss_pred hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHhh
Q 035493 40 ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS-----KDAWSLYLGRCSLGI 90 (305)
Q Consensus 40 ~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 90 (305)
+.+++|.++.+.++... .+..+..+..++....... ++.+.+.+.-++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 35678888887765432 4455555555555554432 356667788899999
Q ss_pred cccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHH
Q 035493 91 GLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALIAAVPCLLQ 153 (305)
Q Consensus 91 g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~~~~~~~~~ 153 (305)
|.+...+........ .++++||+..+..+.....|..+++.+.... ++....+..++.+++.
T Consensus 322 g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 322 GIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 988877766665543 3458899999999999988888888887554 5555444444444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00087 Score=59.47 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=70.9
Q ss_pred hhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHH
Q 035493 42 ADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAF----------SKDAWSLYLGRCS 87 (305)
Q Consensus 42 ~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l 87 (305)
+++|.++.+.|.+.+ ++..+.++..++...... .++.+.....-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 568889998886654 555566666555543221 1333445566788
Q ss_pred HhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT 135 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 135 (305)
.+++.+........++.+..|++++|...++.....++|..+++.++.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 899989999999999999999999999999999999999988887663
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.082 Score=48.88 Aligned_cols=101 Identities=10% Similarity=0.180 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcc---hhhHHhHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKD--------AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNV---RGAFTAANQLLVAS 125 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~ 125 (305)
.+..+.++..+|..+.+++.. ....+++-.+..+|.|+.-|...+...|.+++++ |-....++..+.++
T Consensus 56 tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi 135 (654)
T TIGR00926 56 TILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA 135 (654)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH
Confidence 566666677777766665421 2235677788889999999999999999997643 55667777788888
Q ss_pred HHHHHHHhhhhh-----------hhHHHHHHhHHHHHHHHHHh
Q 035493 126 GLSVIYLVGTVV-----------SWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 126 G~~~~~~i~~~~-----------~wr~~~~~~~~~~~~~~~~~ 157 (305)
|..+++.+.... +|...|.+.++..++.++..
T Consensus 136 GSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 136 GSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 888887765322 49999988877766665443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=57.22 Aligned_cols=67 Identities=22% Similarity=0.056 Sum_probs=55.8
Q ss_pred hHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 208 AAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 208 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.......|.+.++.|.++ .+.+.......++..++.++.|++.||+|||+.+..+.....++.+...
T Consensus 22 ~~~~~~~p~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPA-------SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHhcccHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 333344577778889998 8999999999999999999999999999999999988877777666554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=57.03 Aligned_cols=62 Identities=13% Similarity=0.026 Sum_probs=52.5
Q ss_pred hHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 213 YASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
..|.+.++.|.++ .+.+.......++..++.++.|+++||+|||+.+..+.....++.+...
T Consensus 30 ~~~~i~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 30 AIADMARDLNVRE-------GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred cHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 4577778889999 8999999999999999999999999999999998888776666555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=57.21 Aligned_cols=68 Identities=7% Similarity=-0.090 Sum_probs=57.9
Q ss_pred hhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 207 SAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
........|.+.++.|.+. .+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+..+
T Consensus 19 ~~~~~~~l~~~~~~~g~s~-------~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISI-------PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHhChHHHHHHcCCCH-------HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 4455556788888889988 8889999999999999999999999999999999998888877766554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=51.59 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHH
Q 035493 11 AVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCI 66 (305)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~ 66 (305)
+...+.+.+.++.-..|.+. .......+-++-|++..+..+... .++.+..+..
T Consensus 269 ~~~~i~~~v~~~qq~sGi~a--i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINA--IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA 346 (485)
T ss_pred HHHHHHHHHHHHHHhcCcce--eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 33444445555555555433 233334566666777775543332 5556666555
Q ss_pred HHHHHHHhh---cchh------HHHHHHHHHhhcccc-hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHH----H
Q 035493 67 FGWLAIAFS---KDAW------SLYLGRCSLGIGLEL-MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIY----L 132 (305)
Q Consensus 67 ~~~~~~~~~---~~~~------~l~~~r~l~G~g~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~----~ 132 (305)
+..++.... ++.. ..+++.++..++.+. ..|...-+.+|.+|++.|..+.+......-+...+-. .
T Consensus 347 ~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~ 426 (485)
T KOG0569|consen 347 VALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP 426 (485)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544433 1111 123444444444333 3677778889999999999999888777666554433 2
Q ss_pred hhhhhhhHHHHHHhHHHHHHHH-HHhhcccCChH
Q 035493 133 VGTVVSWRALALIAAVPCLLQV-VGLFFIPESPR 165 (305)
Q Consensus 133 i~~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~~ 165 (305)
+-+.+|= +.|....+++.+.. ..+..+||++.
T Consensus 427 l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 427 LQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 3344444 66666666665555 55677999874
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0016 Score=56.76 Aligned_cols=66 Identities=8% Similarity=-0.126 Sum_probs=56.5
Q ss_pred HHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 209 AIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
......|.+.++.|.++ .+.+...+...++..++++..+++.||+|||+.+..+..+.+++.+.+.
T Consensus 21 ~~~~l~~~~~~~~~~s~-------~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTA-------FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred hHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33455677777789998 8999999999999999999999999999999999999888888776643
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=54.08 Aligned_cols=79 Identities=13% Similarity=-0.030 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 194 VGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
+.....+.....+-....-|.-..+++.|+++ .+.............+...+.|.+.||+|||+.-+...++.
T Consensus 37 r~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~-------~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily 109 (354)
T PF05631_consen 37 RKYLLVYLLAMAADWLQGPYLYALYESYGFSE-------HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY 109 (354)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 33344444333333333333334456789998 88888888888888999999999999999999988887877
Q ss_pred HHHHHH
Q 035493 274 CLSLSI 279 (305)
Q Consensus 274 ~~~~~~ 279 (305)
.++++.
T Consensus 110 ~~scl~ 115 (354)
T PF05631_consen 110 SLSCLT 115 (354)
T ss_pred HHHHHH
Confidence 777653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0029 Score=54.41 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhh---cch------hHHHHHHHHHhhcccchhhhhhhhhhhccCCc---chhhHHhHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFS---KDA------WSLYLGRCSLGIGLELMTYVIPIYIAEITPKN---VRGAFTAANQLLVA 124 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~---~~~------~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~ 124 (305)
++.++.++..+|.++..++ ++. +.++++-.+.++|.|+.-|...++.+|.++++ +|......+..+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 3567788888888774433 222 67889999999999999999999999999876 35667778889999
Q ss_pred HHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHHh
Q 035493 125 SGLSVIYLVGTV----VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 125 ~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~~ 157 (305)
+|..++.....+ .+|.+.|.+.++..++..+..
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 999999877644 489999999888776666544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0084 Score=52.72 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHH-HHHHHHHHHHHhh----hhhhhH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQL-LVASGLSVIYLVG----TVVSWR 140 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~----~~~~wr 140 (305)
+++.......++.|++.+...+....++.|.+|+++|+...++... +..++..++|.+. +..|++
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 3444444555666777777667677889999999999999988543 3334344555554 444643
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0021 Score=57.31 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=59.1
Q ss_pred HhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhhhHhHHHHHHHH
Q 035493 201 MQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDK-SGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~r~~~~~~~~~~~~~~~ 278 (305)
+..-.+++.+..+.+.|+++ .|++. .++...............+++|+++|| +||||.+..+..+..++.+
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~-------~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~ 96 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQ-------EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYF 96 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 33444566677677777665 68888 777777777777777888899999999 9999999999999888877
Q ss_pred HHHH
Q 035493 279 IIAL 282 (305)
Q Consensus 279 ~~~~ 282 (305)
.+++
T Consensus 97 ~~~~ 100 (489)
T PRK10207 97 MTGM 100 (489)
T ss_pred HHHH
Confidence 7664
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00057 Score=59.65 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHH-----HHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLL-----VASGLSVIY 131 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-----~~~G~~~~~ 131 (305)
++..++....+=.+..+..+|.|..+...+++|+..+..+.+..+|+++..||+-|..+.++.+.. -++|.++|.
T Consensus 438 v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhh
Confidence 555666666666777788899999999999999999999999999999999999999998887543 356666666
Q ss_pred HhhhhhhhHHHHHHhHHHHHHHHHHh
Q 035493 132 LVGTVVSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 132 ~i~~~~~wr~~~~~~~~~~~~~~~~~ 157 (305)
.+-..++=|..|...++.+++.....
T Consensus 518 ~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 518 FVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhheeehhHHHHHHHHHHHHHHHHHH
Confidence 66677788999988888777766544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=57.42 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=75.4
Q ss_pred hhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhc
Q 035493 39 GITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFS---KDAWSLYLGRCSLGIG 91 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~g 91 (305)
.+++.+|.|+.+.|.... .+..+..+..++..+.... ++.+......++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 345567888888775443 5556666666665544332 4556667788999999
Q ss_pred ccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 92 LELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 92 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.|...+.....+.+..|+++++.+.++.+....+|..+|+.+...
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888889999999999999999999999999998877644
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=55.43 Aligned_cols=60 Identities=20% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 215 SYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
|.+.++.|.++ .+.+.......++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 30 ~~i~~~~~~s~-------~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 30 KAIQADLQTSA-------SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 34456678888 8999999999999999999999999999999999888777666555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=48.61 Aligned_cols=88 Identities=28% Similarity=0.316 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcc--hhHHHHHHHHHhhcccchhhhhhhhhhhccCC-cchhhHHhHHHH-HHHHHHHHHHHhhhh----
Q 035493 65 CIFGWLAIAFSKD--AWSLYLGRCSLGIGLELMTYVIPIYIAEITPK-NVRGAFTAANQL-LVASGLSVIYLVGTV---- 136 (305)
Q Consensus 65 ~~~~~~~~~~~~~--~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~i~~~---- 136 (305)
...+.+...+..+ .+.+.+.|+.+|++.+...+...+++.|+.|+ ++|+...+.... ....|..+++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 79 FLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666665 89999999999999999999999999999998 678888888877 577777777765532
Q ss_pred --hhhHHHHHHhHHHHHH
Q 035493 137 --VSWRALALIAAVPCLL 152 (305)
Q Consensus 137 --~~wr~~~~~~~~~~~~ 152 (305)
.+||..+.........
T Consensus 159 ~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 159 LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HhcchHHHHHHHHHHHHH
Confidence 3799977666555433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0044 Score=52.81 Aligned_cols=101 Identities=14% Similarity=-0.032 Sum_probs=68.3
Q ss_pred chhhhhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 035493 35 PVEAGITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLG 89 (305)
Q Consensus 35 ~~~~~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 89 (305)
...|.+.++.|.+..+.+.+.+ .+..+..+..++.....+.++..... .-++.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 4456666778988888776555 34455555556655555554433222 456789
Q ss_pred hcccchhhhhhhhhhhccC-CcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 90 IGLELMTYVIPIYIAEITP-KNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 90 ~g~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++.+...+...+.+.+..+ +++++...++.+....+|..++|.+...
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777776555 4567888888887777777777766643
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=57.44 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=53.7
Q ss_pred hhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 207 SAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
.+.+..+.+.+.++.|++. .+.+...... .......+..|++.||+|+|+.+.++.++..++.+..++.
T Consensus 43 ~y~fsv~s~~L~~~lgls~-------~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQ-------RDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHHHHHhCcCH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788877789988 7777666553 3333456678999999999999999999999988887764
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=55.64 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=60.6
Q ss_pred HHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHH
Q 035493 209 AIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAF 284 (305)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 284 (305)
.+..-.|.+.++.+++. .+.+...+...+...++..+.|.++||.+.|+.+..+.++.++..+++++..
T Consensus 47 nF~~a~p~l~e~~~lsk-------~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 47 NFNLAMPALIEDGGLSK-------TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred hHhhccHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence 45555577777778999 9999999999999999999999999999999999999999999888887543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.01 Score=49.60 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=67.4
Q ss_pred hcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhh
Q 035493 44 LGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVI 99 (305)
Q Consensus 44 ~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~ 99 (305)
+|+++++.++..+ .+..+..+..++.++....++... ...-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6888888776655 445555555555555544444332 345568899999999999
Q ss_pred hhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh----hhhhhHHHHHHhH
Q 035493 100 PIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG----TVVSWRALALIAA 147 (305)
Q Consensus 100 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~----~~~~wr~~~~~~~ 147 (305)
.+...|..|++ .+.+.++. ....+|..+.|.+. +..|-+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 99998888764 45666665 45567888888754 3346777776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0093 Score=52.93 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHhHHH
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-------SWRALALIAAVP 149 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-------~wr~~~~~~~~~ 149 (305)
+....++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.... +|+..|.+.++.
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 344444444555555555555554555566664 799999999999999999999877432 488999988877
Q ss_pred HHHHHHHhhccc
Q 035493 150 CLLQVVGLFFIP 161 (305)
Q Consensus 150 ~~~~~~~~~~~~ 161 (305)
.++..+.....+
T Consensus 439 ~~i~~i~~~~~~ 450 (465)
T TIGR00894 439 NILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHeeeee
Confidence 777665554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=55.24 Aligned_cols=64 Identities=16% Similarity=0.024 Sum_probs=54.7
Q ss_pred HHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 211 ACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 211 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
.-..|.+.++.|.++ .+.+.......++..++.++.|++.||+|||+.+..+.....++...+.
T Consensus 11 ~p~~~~~~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 74 (377)
T PRK11102 11 LPALPVIAADFGVSA-------GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA 74 (377)
T ss_pred hccHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 344577788889998 8999999999999999999999999999999999988877777666654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.025 Score=50.36 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHhhcccchhhhhhhhhhhccC-------CcchhhHHhHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAF-----SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITP-------KNVRGAFTAANQLLVA 124 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~ 124 (305)
.+..+..+..++.+...+ .++.+.+++.-++.|++.+...+...++++|..+ .|+.|...+......-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 298 LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 444455554444443322 3456677777888999999999999999999866 3334667888887777
Q ss_pred HHHHHHHHhh
Q 035493 125 SGLSVIYLVG 134 (305)
Q Consensus 125 ~G~~~~~~i~ 134 (305)
+|..+++.+.
T Consensus 378 ~~~al~~~i~ 387 (473)
T PRK10429 378 GGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHHH
Confidence 7777776655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.19 Score=44.42 Aligned_cols=55 Identities=13% Similarity=-0.119 Sum_probs=43.0
Q ss_pred HHHHHHhhcccchhh-hhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh
Q 035493 83 LGRCSLGIGLELMTY-VIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV 137 (305)
Q Consensus 83 ~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 137 (305)
+......+-.....+ ....+.+|.++.++-.|..++...+.++|.++++.+...+
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555455555 6778999999999999999999999999999999877554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0043 Score=54.16 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 215 SYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
|.+.++.+.+. .+.....+...++..++.++.|.++||+|||+.+..+..+..++.+...
T Consensus 40 ~~i~~~~~~~~-------~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 99 (413)
T PRK15403 40 INVVRDFNADV-------SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL 99 (413)
T ss_pred HHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 45556677777 7888888999999999999999999999999999888777766655544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0071 Score=39.38 Aligned_cols=68 Identities=22% Similarity=0.047 Sum_probs=58.4
Q ss_pred HHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 209 AIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
.++-..|.+.++.+++. .+.++..+...++..+|.+...++.++.++++.+..+.+...+.++.+++.
T Consensus 10 ayTplLP~M~~~~~ls~-------~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSL-------SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445688888899999 999999999999999999999999999888888888888888888777743
|
Note that many members are hypothetical proteins. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0037 Score=52.38 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++..+.+++++..++...+.+-..+.+.-+..-+...+.+.+++.|..|.+|.+-|+...|......-+|.++.|+++-.
T Consensus 413 TMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~ 492 (528)
T KOG0253|consen 413 TMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMR 492 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHH
Confidence 77888888888888777775544433333344444555677788999999999999999999999999999999999833
Q ss_pred h--hhHHHHHHhHHHHHHHHHHhhcccCC
Q 035493 137 V--SWRALALIAAVPCLLQVVGLFFIPES 163 (305)
Q Consensus 137 ~--~wr~~~~~~~~~~~~~~~~~~~~~es 163 (305)
. +-..+..+.+..+++..++..++|-.
T Consensus 493 ~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 493 AELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred hccceeehHHHHHHHHHHHHHHheeeeec
Confidence 3 23344455555566666666666643
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.019 Score=46.56 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=78.6
Q ss_pred hhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhccc
Q 035493 39 GITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLE 93 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 93 (305)
.++++||+|+...+-+.+ ....+++...++-....| +++.=..+..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 578899999988776655 222233333333333333 23333456777888877
Q ss_pred chhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh-------hhHHHH-HHhHHHHHHHHHHhhcc
Q 035493 94 LMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV-------SWRALA-LIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~-------~wr~~~-~~~~~~~~~~~~~~~~~ 160 (305)
.........++...|+++.|.+.+..+...++|..+.++++..+ .|--.| .....+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66666677788888999999999999999999999999988544 354444 44444455554444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.01 Score=51.89 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred hHHHHhHHHHHHHhcccccccCCcchh-HHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 208 AAIACYASYIFAAAELMNIQGNDSMNL-LFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 208 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
....+-.|.+.++.|+++ .+ .+........+..+..+.+|++.||+|.|+.+..+.+..++..+++++.
T Consensus 43 ~n~s~a~p~L~~elglT~-------~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTE-------ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred chHHHHHHHHHHHcCCCH-------HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777889999 88 8999999999999999999999999999999999888887777776653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.018 Score=52.11 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 57 AMWLSDLFCIFGWLAIAF--SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.++.+..+...+.-.++. .+|.......-++.|+|.|...........-..|+++-+.+.++....-.+|..++..+.
T Consensus 382 ~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 382 QLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444555555443333322 345566677788999999998888888777788999999999988777777666654433
Q ss_pred hhh------------------------------------------------------------------hhHHHHHHhHH
Q 035493 135 TVV------------------------------------------------------------------SWRALALIAAV 148 (305)
Q Consensus 135 ~~~------------------------------------------------------------------~wr~~~~~~~~ 148 (305)
... +.|++|+....
T Consensus 462 ~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~sia 541 (599)
T PF06609_consen 462 NAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIA 541 (599)
T ss_pred HHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 48999999999
Q ss_pred HHHHHHHHhhcccCChHHHHH
Q 035493 149 PCLLQVVGLFFIPESPRWLKK 169 (305)
Q Consensus 149 ~~~~~~~~~~~~~es~~~~~~ 169 (305)
.+++.++..++++|..++...
T Consensus 542 FG~vaiiaa~fl~d~~~~mt~ 562 (599)
T PF06609_consen 542 FGVVAIIAALFLGDIDKYMTN 562 (599)
T ss_pred HHHHHHHHHHHcCChHHhhcc
Confidence 999999999999887766544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0067 Score=53.62 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred hhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhc----ccCCchhhhhH-hHHHHHHHHHHH
Q 035493 207 SAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTD----KSGRRPLLLAS-DIGTCLSLSIIA 281 (305)
Q Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----~~g~r~~~~~~-~~~~~~~~~~~~ 281 (305)
+.....+.+.++++.|.+. ...+.......+...+..++.|+++| |+||||..+.+ .....+++.+++
T Consensus 20 ~~l~~~~l~~yl~~lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~ 92 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG 92 (477)
T ss_pred HHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888899998 88999999999999999999999999 59999998764 444444555544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.031 Score=48.23 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchh-----------------HHHHHHHHHhhcccchhhhhhhhhhhccCCcchhh-HHhH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAW-----------------SLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGA-FTAA 118 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~-~~~~ 118 (305)
.+..+.....++.++..++.++. .++++--+.=++.-.....+-+++.|...+++|.+ +.+.
T Consensus 104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~ 183 (498)
T KOG0637|consen 104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSV 183 (498)
T ss_pred hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchh
Confidence 55666666666666666664432 23344444445555677788899999998777766 9999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHH
Q 035493 119 NQLLVASGLSVIYLVGTVVSWRA 141 (305)
Q Consensus 119 ~~~~~~~G~~~~~~i~~~~~wr~ 141 (305)
+..+.++|..+|...+.+.+|+-
T Consensus 184 f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 184 FSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred HHHHHHhcceeeeecccccCceE
Confidence 99999999999999888887763
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0032 Score=40.97 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.7
Q ss_pred hhcccccccchhhhhhhhhcCCchhHHHHHH
Q 035493 26 YGCSVGYSSPVEAGITADLGLSLIEYSVFGS 56 (305)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s 56 (305)
.|+.+..++|.+|.+++|.++|.++.+++.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~las 34 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLAS 34 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHH
Confidence 4566777899999999999999999999988
|
Note that many members are hypothetical proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.087 Score=46.51 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCC-------cchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPK-------NVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
++.+.+.+..++.|++.+...+...+.++|..+. ++.|...+..+....+|..+++.++
T Consensus 317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888999999999999999999998862 2335667777777777777777665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.18 Score=43.21 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=82.7
Q ss_pred hhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHH---HHhhcchhHHHHHHHHHhhc
Q 035493 40 ITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLA---IAFSKDAWSLYLGRCSLGIG 91 (305)
Q Consensus 40 ~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~g 91 (305)
=.+-||++..|...+.+ .-..++....++..+ .+...+.+.+...-++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 34558888887654443 333444444444433 34557888999999999999
Q ss_pred ccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh--------------hhhHHHHHHhHHHHHHHHHH
Q 035493 92 LELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV--------------VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 92 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~--------------~~wr~~~~~~~~~~~~~~~~ 156 (305)
.|.....+.+.+.|..++++.|..+|.+......+.-++..++.. .++-.+|.+.++..++...+
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776666655555421 15667777766665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.009 Score=50.83 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=57.7
Q ss_pred HHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHHh
Q 035493 209 AIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFC 285 (305)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 285 (305)
.+..-.+.+-++.++|+ .|.++...+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+++...
T Consensus 32 l~s~l~~~i~~~~~LS~-------~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~ 101 (417)
T COG2223 32 LFSPLGVFIKSDFGLSE-------GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT 101 (417)
T ss_pred HHHHHHhhhccccCCCH-------HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333344556678999 99999999999999999999999999999999999999888888877775543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=50.15 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcch------hhHHhHHHHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVR------GAFTAANQLLVASGLSVI 130 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r------~~~~~~~~~~~~~G~~~~ 130 (305)
....+++.....+....+++++.++.+-++..|++.+...........+..+.++- |...++...++++|..+|
T Consensus 340 ~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~G 419 (464)
T KOG3764|consen 340 LSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIG 419 (464)
T ss_pred HHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcc
Confidence 44566666667777778899999999999999999888888777777777765443 577888889999999999
Q ss_pred HHhhhhh----hhHHHHHHhHHHHHHHHHHh
Q 035493 131 YLVGTVV----SWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 131 ~~i~~~~----~wr~~~~~~~~~~~~~~~~~ 157 (305)
|.+++.. |.+|...+.++..++...+.
T Consensus 420 P~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 420 PTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred ccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 9988554 89998888888877766444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.026 Score=48.83 Aligned_cols=150 Identities=16% Similarity=0.018 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHH-----------HHH----------------------HHHH
Q 035493 14 LSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSV-----------FGS----------------------AMWL 60 (305)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----------~~s----------------------~l~~ 60 (305)
.-.+..+..+|.......-.+.....+-+.+++.+++... +.. +.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4455556666766666666666677777777665554332 111 6677
Q ss_pred HHHHHHHHHHHHHhhcc--------hhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHH
Q 035493 61 SDLFCIFGWLAIAFSKD--------AWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYL 132 (305)
Q Consensus 61 ~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 132 (305)
+..++.+..+..+...| ...+.+..++.-+|-+ .....+-+|.+|.+-|+..-|+..+..-.|.+++..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 77777777777776655 1223334444444432 334455689999999999999999998888888766
Q ss_pred hh----h-----hhhhHHHHHHhHHHHHHHHHHhhcccCChHH
Q 035493 133 VG----T-----VVSWRALALIAAVPCLLQVVGLFFIPESPRW 166 (305)
Q Consensus 133 i~----~-----~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~ 166 (305)
.- . ..+-|+.+++.+...++..+..+++||+.+.
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 54 2 3378999999999999888888999998764
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.082 Score=46.39 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhcccchhhhhhhhhhhccCC-------cchhhHHhHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSK--DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPK-------NVRGAFTAANQLLVASGL 127 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~ 127 (305)
.+..+..+.+++.+...+.+ |.+.+++.-++.|++.+...+...+.++|..+. |+.|...+..+...-+|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~ 371 (428)
T PF13347_consen 292 VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ 371 (428)
T ss_pred ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence 77788888888888877775 999999999999999999999999999998873 334788888888777777
Q ss_pred HHHHHhh
Q 035493 128 SVIYLVG 134 (305)
Q Consensus 128 ~~~~~i~ 134 (305)
.+++.+.
T Consensus 372 ~la~~i~ 378 (428)
T PF13347_consen 372 GLAGAIV 378 (428)
T ss_pred HHHHHHH
Confidence 7776655
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.03 Score=41.40 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.++++.+.+.+-... -+-++.+.++.+-.+.|++.+..++....++.+..++++|++..+++......+.++|.++.
T Consensus 69 sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 69 SMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555433322 34567888999999999999999999999999999999999999998888888877776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.11 Score=45.91 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=82.2
Q ss_pred hhhhhhcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhccc
Q 035493 39 GITADLGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLE 93 (305)
Q Consensus 39 ~~~~~~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g 93 (305)
.++..++++..+.+...+ .+..|...-.+.....+++++.|+......+.++. .
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 456788999999885544 67777888888888999999999999999888877 7
Q ss_pred chhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh
Q 035493 94 LMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT 135 (305)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 135 (305)
...|...+.++.+.+++++|++.++....-.+...++|.+-.
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence 889999999999999999999999999999888888887653
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.17 Score=42.31 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh------
Q 035493 64 FCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV------ 137 (305)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~------ 137 (305)
-......+..+.++.+.+=+..++-|...+. ..+-++++-+..+++++.++.+...+..-.|...+..++..+
T Consensus 81 s~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~ 159 (433)
T KOG3810|consen 81 SGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETL 159 (433)
T ss_pred chhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhccc
Confidence 3344455566778888888889999988544 556788999999999999999998888877777777766443
Q ss_pred hhHHHHHHhHHHHHHHHHHhhcccCChHHHHH---HHHHHHHHhhCCCc--chhh----h----HHHHH--------HHH
Q 035493 138 SWRALALIAAVPCLLQVVGLFFIPESPRWLKK---SLKLLYSALRGKTA--DISM----E----SADIR--------VGV 196 (305)
Q Consensus 138 ~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~---~~~~~~~~~~~~~~--~~~~----~----~~~~~--------~~~ 196 (305)
+.+..-.+......+......++|..+|.... +.+....+....++ +..+ . .++.+ ...
T Consensus 160 sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~W 239 (433)
T KOG3810|consen 160 SYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKW 239 (433)
T ss_pred chhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 44555555544444455555667766543222 11111111111000 0000 0 00000 233
Q ss_pred HHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 035493 197 GLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRR 263 (305)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r 263 (305)
.+......++++-..+|.....++.. ++ ..+ ...|..-.+..+.+.++.+..|.+.-+..|.
T Consensus 240 SlWwAl~scg~~QV~nY~Q~LW~~~~-~~-~~~---vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 240 SLWWALASCGYYQVTNYTQILWKEVA-PN-PAN---VYNGAVEAVSTLLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHhhC-CC-chh---hhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence 34444455567777777766666643 11 000 2223444555667777788888876555555
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.037 Score=47.56 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
++....+...+.....-+.++.+..++.-+..|+..|..+..+...+.|..|+++|...++..+.+-+.|..++..++-.
T Consensus 314 ~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 314 LLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444555678999999999999999999999999999999999999999999999999999999888744
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.051 Score=43.64 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=63.3
Q ss_pred hhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 204 LVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
....+.+..|.|.+-++.|++. ++.........++..+| +..|.+.||.|++..+.++.....++...+...
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq-------~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQ-------SQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCH-------HHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999888899999 88888888888888764 888999999999999999999999998887765
Q ss_pred Hhh
Q 035493 284 FCL 286 (305)
Q Consensus 284 ~~~ 286 (305)
...
T Consensus 87 ~~~ 89 (250)
T PF06813_consen 87 VSG 89 (250)
T ss_pred HhC
Confidence 543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.55 Score=41.38 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhcccchhhhhhhhhhhccCC-------cchhhHHhHHHHHHHHHH
Q 035493 57 AMWLSDLFCIFGWLAIAFSK--DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPK-------NVRGAFTAANQLLVASGL 127 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~ 127 (305)
++..+.++..++..+..+.+ +.+..++..++.++|.+...+...++++|..+- |+-|...+......=+|.
T Consensus 304 ~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ 383 (467)
T COG2211 304 LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL 383 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 88888999999998888775 788888999999999999999999999887762 233566666666655666
Q ss_pred HHHHHhh
Q 035493 128 SVIYLVG 134 (305)
Q Consensus 128 ~~~~~i~ 134 (305)
.++..+.
T Consensus 384 ala~~~~ 390 (467)
T COG2211 384 ALAGFIP 390 (467)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.47 Score=41.52 Aligned_cols=61 Identities=13% Similarity=-0.007 Sum_probs=48.7
Q ss_pred HHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 214 ASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
...|+...|+++ ...+..-....+.++.+++...++.+|+|..|.-..+......++....
T Consensus 281 mt~yl~~~G~s~-------~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v 341 (432)
T PF06963_consen 281 MTAYLKSQGYSP-------SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCV 341 (432)
T ss_pred HHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 355667779999 8889999999999999999999999999988877777665554444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.039 Score=48.82 Aligned_cols=141 Identities=14% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHhhhhhhhcccccccchhhh-hhhhhcCCchhHHHHHH---------------------------------HHHH
Q 035493 15 STLVAICGSVAYGCSVGYSSPVEAG-ITADLGLSLIEYSVFGS---------------------------------AMWL 60 (305)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s---------------------------------~l~~ 60 (305)
.+..+.++.+.............|. +++-+|.+..+.|++.+ .-.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 3445555556565555556666665 45568999999888877 1112
Q ss_pred HHHHHHHHHHHHHhhcc--h-hH---HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 61 SDLFCIFGWLAIAFSKD--A-WS---LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 61 ~~~~~~~~~~~~~~~~~--~-~~---l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
+....++..+..++.++ . .. +.+.-.+.|+..++ ...-..|. .|++-+..+++.+....+...++|.+.
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG----FYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh----hHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 22222222333333331 1 11 12222233333222 22222333 456689999999999999999999887
Q ss_pred hhh-------hhHHHHHHhHHHHHHHHHHhhcc
Q 035493 135 TVV-------SWRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 135 ~~~-------~wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
+.+ .||++|++.++..++..+.+.+.
T Consensus 414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 443 79999999998888777555443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.057 Score=43.16 Aligned_cols=51 Identities=8% Similarity=0.179 Sum_probs=35.5
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHH--hhh-----h--hhhHHHHHHhHHHHHHHHHHhhc
Q 035493 109 KNVRGAFTAANQLLVASGLSVIYL--VGT-----V--VSWRALALIAAVPCLLQVVGLFF 159 (305)
Q Consensus 109 ~~~r~~~~~~~~~~~~~G~~~~~~--i~~-----~--~~wr~~~~~~~~~~~~~~~~~~~ 159 (305)
.|+|++.+.+...++++|.++... +-. . -+|++++.+.+++.++-++....
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888998877533 222 1 17999998888777666655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.053 Score=46.97 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=49.7
Q ss_pred hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 221 AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 221 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
.+.++ ...++......+...+++++.|++.||++||+++.+|..+-.++.+..++.
T Consensus 63 fni~~-------s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs 118 (493)
T KOG1330|consen 63 FNISD-------SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS 118 (493)
T ss_pred cCCCc-------hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH
Confidence 57777 788899999999999999999999999999999999988888777776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.015 Score=53.63 Aligned_cols=62 Identities=15% Similarity=-0.043 Sum_probs=54.2
Q ss_pred HHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 215 SYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
+.+-++.+++. .+.++..+...++..++.++.+++.||.|||+.+.++.++++++.++.++.
T Consensus 57 ~~iek~F~lss-------~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 57 TTIERRFKLST-------SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred hhhhhhhCCCC-------CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 45555568888 888899999999999999999999999999999999999999998887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.02 Score=50.45 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred hchhHHHHhHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHH
Q 035493 205 VGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLS 278 (305)
Q Consensus 205 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~ 278 (305)
.....+.-..+.+++++|+++ .+.+......-+..+++.++.|.++||+.+||.++++..+..+...
T Consensus 25 ~~~g~l~pll~vy~kQLGl~p-------~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~ 91 (618)
T KOG3762|consen 25 ARFGSLFPLLAVYFKQLGLNP-------AVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT 91 (618)
T ss_pred ecccccchHHHHHHHHcCCCH-------HHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344555666788899999999 9999999999999999999999999999887777766555544333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.85 Score=39.42 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh-
Q 035493 58 MWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV- 136 (305)
Q Consensus 58 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~- 136 (305)
...+..+..+|.++.++++|.+.=+++-.+.+++.|........+. ..+++ ...+-+..+.+.+.++|+..-..
T Consensus 92 i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~----~~l~~wssGTG~aGl~Ga~~y~~l 166 (402)
T PF02487_consen 92 ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK----SSLSAWSSGTGGAGLVGALYYLGL 166 (402)
T ss_pred HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc----cccccccCCcChhhHHHHHHHHHH
Confidence 4566667778888888999999988999999999988888777764 45554 24566666666666666554311
Q ss_pred --h--hhHHHHHHhHHHHHHHHHHhh-cccC
Q 035493 137 --V--SWRALALIAAVPCLLQVVGLF-FIPE 162 (305)
Q Consensus 137 --~--~wr~~~~~~~~~~~~~~~~~~-~~~e 162 (305)
. +-|..+.......++..+..+ .+|+
T Consensus 167 T~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 167 TTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 347777777666655554443 3443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.15 Score=43.60 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=54.5
Q ss_pred hHHHHHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 213 YASYIFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
..|.+.+..+++. .+++........+....++..+++.+|+|+|+-+..+..++++++.++.
T Consensus 35 Lip~l~~~f~ls~-------~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 35 LIPHLKEVFDLTY-------FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred hHHHHHHHhCccH-------HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3455555568888 8999999999999999999999999999999999999999999888775
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.081 Score=44.80 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT 135 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 135 (305)
.+..++....-..++.+.++....+..+-.+--+..+...+....++....|+++||...|+......++-++||+++.
T Consensus 331 ~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 331 VLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence 4455555555555666777888889999999999988899999999999999999999999999999999999999983
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.3 Score=44.13 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhH---HHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWS---LYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLV 133 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 133 (305)
....+..+..++.+..++..+... ..+...+...+.+..+.....+.+|..|...|..+.+.......+|.+++|.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~ 461 (521)
T KOG0255|consen 382 PLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLF 461 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888887765443 55566666666677777778999999999999999999999999999999988
Q ss_pred hhhhh--hHHHHHH-hHHHHHHHH-HHhhcccCChH
Q 035493 134 GTVVS--WRALALI-AAVPCLLQV-VGLFFIPESPR 165 (305)
Q Consensus 134 ~~~~~--wr~~~~~-~~~~~~~~~-~~~~~~~es~~ 165 (305)
..... +...... .+..+.+.. +...++||+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 462 PLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 74332 2222222 233333433 44478898754
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.093 Score=47.33 Aligned_cols=49 Identities=24% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHH
Q 035493 236 FVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAF 284 (305)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 284 (305)
++..+...++..++.++.|+++|++|||+.+..+.+...++.++.+.+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~ 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6888999999999999999999999999999999999988888877643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.013 Score=51.70 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHH
Q 035493 234 LLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
+.........++..+|.++.|.+.||+|||+.+..+..+..++.++.++.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~ 96 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA 96 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 45677888899999999999999999999999999988888877776643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=3 Score=36.96 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh-------hh---hhHHHHHHh
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT-------VV---SWRALALIA 146 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~-------~~---~wr~~~~~~ 146 (305)
|.+.++...+++++|+=...|+..+++....|++-.+..++.+-.....|..++..++. .. .-...|+..
T Consensus 393 s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~ 472 (498)
T COG3104 393 SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTI 472 (498)
T ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHH
Confidence 67889999999999999999999999999999999999999999999999988877775 11 344555555
Q ss_pred HHHHHHHH
Q 035493 147 AVPCLLQV 154 (305)
Q Consensus 147 ~~~~~~~~ 154 (305)
+...++..
T Consensus 473 g~v~i~~~ 480 (498)
T COG3104 473 GVVAIVIG 480 (498)
T ss_pred HHHHHHHH
Confidence 55544444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.69 E-value=7.2 Score=34.99 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhcccchhh-hhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh
Q 035493 79 WSLYLGRCSLGIGLELMTY-VIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV 137 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 137 (305)
|.+.+.....-+-.....+ .-..+..|.++.+|-.+..++...+.++|.++++.+...+
T Consensus 144 Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 144 WTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333233333 3467788999999999999999999999999888776433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.26 E-value=7.9 Score=34.40 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=33.4
Q ss_pred hhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh
Q 035493 98 VIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV 137 (305)
Q Consensus 98 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 137 (305)
.-.....|.+..+|-.|..++++.+.+++..++..+...+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899989999999999999999999888877554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.4 Score=38.79 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----h--------hHHHHHHhHHHHH
Q 035493 84 GRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----S--------WRALALIAAVPCL 151 (305)
Q Consensus 84 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~--------wr~~~~~~~~~~~ 151 (305)
--++..+..+..+-....+++|.+|+...|...++.....++|..++..++..+ + -.+..++..+..+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l 403 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL 403 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence 345555555666777778899999999999999999999999888888777443 1 2234444555555
Q ss_pred HHHHHhhcccCChH
Q 035493 152 LQVVGLFFIPESPR 165 (305)
Q Consensus 152 ~~~~~~~~~~es~~ 165 (305)
+.+.+...+|+..+
T Consensus 404 l~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 404 LPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHcCCCch
Confidence 55555566777554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.1 Score=37.10 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV 136 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 136 (305)
.+..-..++.+......+.++++...+.-+..|+-.|..+....--+.+-.++++|..+++....+-.+|..++..++-.
T Consensus 321 ilQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 321 ILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 55556666677777788899999999999999999899999998888888899999999999999999999988887743
Q ss_pred h
Q 035493 137 V 137 (305)
Q Consensus 137 ~ 137 (305)
+
T Consensus 401 l 401 (409)
T KOG3880|consen 401 L 401 (409)
T ss_pred c
Confidence 3
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=12 Score=33.23 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhccC-------CcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 80 SLYLGRCSLGIGLELMTYVIPIYIAEITP-------KNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 80 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
.+.+.-++.|++.+...+...++++|..+ .|+.|...+......-+|..+++.++
T Consensus 320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566788877767666777777665 23335545555555555655555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.5 Score=37.87 Aligned_cols=131 Identities=11% Similarity=-0.087 Sum_probs=66.4
Q ss_pred HHHHHhhhhhhhcccccccchhhhhhhh-hcCCchhHHHHHH-----------------------------HHHHHHHHH
Q 035493 16 TLVAICGSVAYGCSVGYSSPVEAGITAD-LGLSLIEYSVFGS-----------------------------AMWLSDLFC 65 (305)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s-----------------------------~l~~~~~~~ 65 (305)
+...++..++.....+.....+|.+-++ .|.|..+.+.+.. ......+..
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344555555555666566667766666 4566665543322 111222222
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcch-hhHHhHHHHHHHHHHHHHHHhh-----hhhhh
Q 035493 66 IFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVR-GAFTAANQLLVASGLSVIYLVG-----TVVSW 139 (305)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~-----~~~~w 139 (305)
.++.......++.......-+..+.+.....+......++...++.| -...+....+.+.+.++++.+- ..++|
T Consensus 355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~ 434 (495)
T KOG2533|consen 355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW 434 (495)
T ss_pred HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence 23323333333333333333444455566667777778877765544 3444444555555555555443 33477
Q ss_pred HHHHHHh
Q 035493 140 RALALIA 146 (305)
Q Consensus 140 r~~~~~~ 146 (305)
-..|...
T Consensus 435 ~~~f~~~ 441 (495)
T KOG2533|consen 435 GAVFYML 441 (495)
T ss_pred hhHHHHH
Confidence 7777443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.22 Score=40.20 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=31.4
Q ss_pred HHHHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 217 IFAAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
..+..|+.. .+.+..........+....+.|-+.||.|||+.-+.-.+..
T Consensus 63 LYstYgFgk-------G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitY 112 (454)
T KOG4332|consen 63 LYSTYGFGK-------GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITY 112 (454)
T ss_pred eehhcCccC-------CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHH
Confidence 345567766 55555555444455555566778999999998655443333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.66 E-value=20 Score=31.05 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=77.9
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH---------------------------------HHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS---------------------------------AMWLSDLF 64 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s---------------------------------~l~~~~~~ 64 (305)
...+-....|...+... .+|.+-+.=|+|-++.+...- ..++|.+.
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m 113 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM 113 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence 33444567788888888 889888877777777653222 44444444
Q ss_pred HHHHHHHH------HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 65 CIFGWLAI------AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 65 ~~~~~~~~------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
..++...- +-.++...+...-++.-+..+.-..+...+.-....+++-|.+......+...|..++..+-
T Consensus 114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 44433211 11234444545556666777777777888888888889999999999999999988887654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=86.15 E-value=25 Score=31.61 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=68.0
Q ss_pred Hhhhhhhhcccccccchhhhhhhh--hcCCchhHHHH------HH---------------------------HHHHHHHH
Q 035493 20 ICGSVAYGCSVGYSSPVEAGITAD--LGLSLIEYSVF------GS---------------------------AMWLSDLF 64 (305)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~------~s---------------------------~l~~~~~~ 64 (305)
.+-++..|...+......|.+-++ -++|-+|.+.. .| -++.|..+
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m 85 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILM 85 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHH
Confidence 344567777777776677877777 57777776522 11 34444444
Q ss_pred HHHHHHH----------HHhh-------cch--hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH
Q 035493 65 CIFGWLA----------IAFS-------KDA--WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS 125 (305)
Q Consensus 65 ~~~~~~~----------~~~~-------~~~--~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 125 (305)
..++.-. -.+. ++. ..+...-++.=+-.+.-..+.-.+.-....+++++.+......+.+.
T Consensus 86 ~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~ 165 (544)
T PF13000_consen 86 LYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTA 165 (544)
T ss_pred HHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhh
Confidence 4444333 1111 111 12223332333333555556666666777888999999999888888
Q ss_pred HHHHHHHhh
Q 035493 126 GLSVIYLVG 134 (305)
Q Consensus 126 G~~~~~~i~ 134 (305)
|..++..+-
T Consensus 166 Gyfls~tvF 174 (544)
T PF13000_consen 166 GYFLSFTVF 174 (544)
T ss_pred hHHHHHHHH
Confidence 888876554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.51 E-value=10 Score=34.74 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhhhccC---Ccch---hhHHhHHHHHHHHHHHHHHHhhh----hhhhHHHHHHhHHH
Q 035493 80 SLYLGRCSLGIGLELMTYVIPIYIAEITP---KNVR---GAFTAANQLLVASGLSVIYLVGT----VVSWRALALIAAVP 149 (305)
Q Consensus 80 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~G~~~~~~i~~----~~~wr~~~~~~~~~ 149 (305)
.++.+.-+..+|.|+.-|...++-+|-++ ++++ ...+..+....+.|..++..+.. ..+|.+.|.+..+.
T Consensus 154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~ 233 (571)
T KOG1237|consen 154 VLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVL 233 (571)
T ss_pred HHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHH
Confidence 56667778888999999999999999998 3222 35566777778888887766553 34899999887766
Q ss_pred HHHHHHH
Q 035493 150 CLLQVVG 156 (305)
Q Consensus 150 ~~~~~~~ 156 (305)
..+..++
T Consensus 234 ~~lai~i 240 (571)
T KOG1237|consen 234 NALAILI 240 (571)
T ss_pred HHHHHHH
Confidence 5555433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.13 E-value=6.7 Score=34.73 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhh
Q 035493 77 DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVG 134 (305)
Q Consensus 77 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 134 (305)
++....+.-++.|++.+......+..+.+.. +++|..+.++...-..++..++....
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556777889999999999999999999999 45688888888777777776655544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=83.26 E-value=18 Score=31.87 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh
Q 035493 79 WSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT 135 (305)
Q Consensus 79 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 135 (305)
..++.+-.+.=+|-=+......-++.|..|+++||...|......++-.++...+.-
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555566777788899999999999999998888887777666653
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.79 E-value=9.4 Score=33.58 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHHh
Q 035493 233 NLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFC 285 (305)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 285 (305)
+.+.+...++.+..++-.+.+.|+.||+|-|....++.....++..+=.+...
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~ 131 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL 131 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC
Confidence 56778888999999999999999999999999999998888887766444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=82.47 E-value=5.1 Score=37.39 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=45.8
Q ss_pred HHhcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhhhHhHHHHHHHHHHHHH
Q 035493 219 AAAELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDK-SGRRPLLLASDIGTCLSLSIIALA 283 (305)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~ 283 (305)
+..|+++ ..+...........-+..++++++.|+ +||++.+..+.++..++..++++.
T Consensus 16 ~~lg~~~-------~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 16 NFLGFSE-------STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3468877 777777777777777888889999997 699999999988888888777653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=81.85 E-value=15 Score=25.58 Aligned_cols=39 Identities=21% Similarity=-0.016 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHH
Q 035493 234 LLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIG 272 (305)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~ 272 (305)
..+.......++..++..+.+.+.|+.+.+.........
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 344556677788888888999999888877665554333
|
|
| >PRK15015 carbon starvation protein A; Provisional | Back alignment and domain information |
|---|
Probab=81.22 E-value=26 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHhhcccchhhhhhhhh-hhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 035493 83 LGRCSLGIGLELMTYVIPIYI-AEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRALA 143 (305)
Q Consensus 83 ~~r~l~G~g~g~~~~~~~~~i-~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~wr~~~ 143 (305)
+.|=+.+.-..-..|.-.-.= .|+.|.+++-...-=+....+.|.++||.++..+||--.+
T Consensus 56 ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~ 117 (701)
T PRK15015 56 IAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGM 117 (701)
T ss_pred HHHHhccCCCCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHH
Confidence 344344555444333322111 4667766554333345666788999999999999987443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.96 E-value=2.1 Score=38.06 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCC-chhhhhHhHHHHHHHHHHH
Q 035493 233 NLLFVTDLLTAIIQLPAIVASVLLTDKSGR-RPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-r~~~~~~~~~~~~~~~~~~ 281 (305)
+..|+......++..+.+++.++...|.++ |+.++.+.+++.++.++-.
T Consensus 71 ~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~ 120 (488)
T KOG2325|consen 71 TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYL 120 (488)
T ss_pred chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHH
Confidence 667888889999999999999999999886 8888999999999888874
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=80.29 E-value=13 Score=27.54 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHH
Q 035493 235 LFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCL 275 (305)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~ 275 (305)
......+......++.++.+.+.+++|.|+.++++.....+
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~ 79 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAI 79 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555666777788888889999999999999988776653
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 305 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-12 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.85 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.81 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.5 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.6 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.37 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.25 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.25 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.2 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.16 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 97.79 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=214.16 Aligned_cols=271 Identities=23% Similarity=0.400 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcC--------CchhHHHHHH------------------------
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGL--------SLIEYSVFGS------------------------ 56 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s------------------------ 56 (305)
++..+.+.++++++.+.+|||.+.++..+|.++++++. ++++.|++.+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45667777888899999999999999999999888743 2334455544
Q ss_pred HHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH
Q 035493 57 AMWLSDLFCIFGWLAIA------------------FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA 118 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~ 118 (305)
++.++.+++.+++++++ +++|++.++++|+++|+|.|+..+..+.+++|+.|+++|++..+.
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 88899999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCC
Q 035493 119 NQLLVASGLSVIYLVGTV------------VSWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGK 181 (305)
Q Consensus 119 ~~~~~~~G~~~~~~i~~~------------~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~ 181 (305)
.+.+...|..+++.++.. .+||+.+....++.++..+..++.||||+|+.. ++++.+++..++
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999888877622 269999999998888888888999999999866 222222222211
Q ss_pred Ccchhh------hH---------------HHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHH
Q 035493 182 TADISM------ES---------------ADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDL 240 (305)
Q Consensus 182 ~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (305)
+...++ .. +..........+.+..+.+.+.+|.|.+.+..+.+. .+......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 319 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST-------DIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH-------HHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc-------cchhhHHH
Confidence 100000 00 000145556666777788888999999888888777 67777778
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHHhh
Q 035493 241 LTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCL 286 (305)
Q Consensus 241 ~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
..++...++.++++++.||+|||+.+..+...+.++++.++.....
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999888888877777655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=188.77 Aligned_cols=254 Identities=11% Similarity=0.008 Sum_probs=196.2
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.....+.+..+..+++....++..|.+.+++|++.++.+++.+ ++..+.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555666667788888888999999999999999999998877 88899999999
Q ss_pred HHHHH---HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhh------
Q 035493 68 GWLAI---AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVS------ 138 (305)
Q Consensus 68 ~~~~~---~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~------ 138 (305)
+.++. ++++|++.++++|++.|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99998 888999999999999999999999999999999999999999999999999999999999885542
Q ss_pred ------------------------hHHHHHHhHHHHHHHHHHh--hcccCChHHHHH-----HHHHHHHHhhCCCcchhh
Q 035493 139 ------------------------WRALALIAAVPCLLQVVGL--FFIPESPRWLKK-----SLKLLYSALRGKTADISM 187 (305)
Q Consensus 139 ------------------------wr~~~~~~~~~~~~~~~~~--~~~~es~~~~~~-----~~~~~~~~~~~~~~~~~~ 187 (305)
||+.|++.+...++..+.. ...||+++...+ +.++..++..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------ 257 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARI------ 257 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTC------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhC------
Confidence 9999988776665554433 335666542100 000011111100
Q ss_pred hHHHHHHHHHHHHHhhhhchhHHHHhHHHH-HHHh-cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 035493 188 ESADIRVGVGLMVMQPLVGSAAIACYASYI-FAAA-ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPL 265 (305)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~ 265 (305)
++ .+......+...........|.|.+ +++. |.+. .+.+.......++..+++++.+++.||++||+.
T Consensus 258 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 258 --RH-WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp --SH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred --hH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 00 1333344444444566777888888 8775 8988 889999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHH
Q 035493 266 LLASDIGTCLSLSIIA 281 (305)
Q Consensus 266 ~~~~~~~~~~~~~~~~ 281 (305)
+..+..+..++++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 328 LAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777766655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=188.84 Aligned_cols=257 Identities=10% Similarity=-0.025 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
+.++.......++.+..+++.....+..|.+.+++ .+.++.+++.+ ++..+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34566677777888888889899999999999999 99999998877 888999999
Q ss_pred HHHHHHHHh----hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----h
Q 035493 66 IFGWLAIAF----SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----V 137 (305)
Q Consensus 66 ~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~ 137 (305)
.++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++.. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999999999999999999999999999999999999999999998888744 4
Q ss_pred h-hHHHHHHhHHHHHHHHH-HhhcccCChHHHHH----H---H-HHHHHHhhCCCcch-----hhhHHHH-HHHHHHHHH
Q 035493 138 S-WRALALIAAVPCLLQVV-GLFFIPESPRWLKK----S---L-KLLYSALRGKTADI-----SMESADI-RVGVGLMVM 201 (305)
Q Consensus 138 ~-wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~----~---~-~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~ 201 (305)
+ ||+.|++.++..++..+ ..+.+||+|+.... + . ++..++.++++.+. .+..++. .+...+..+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHH
Confidence 7 99999998888766654 44668887753211 0 0 00000000000000 0001111 133444444
Q ss_pred hhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCchhhhhHhHHHH
Q 035493 202 QPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS--GRRPLLLASDIGTC 274 (305)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~r~~~~~~~~~~~ 274 (305)
...........+.|.++++ .|+++ .+.+.......++.+++.++.+++.||+ +||+.+..+..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4445566777888998888 68888 8889999999999999999999999999 99988877655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=163.97 Aligned_cols=230 Identities=12% Similarity=0.034 Sum_probs=179.2
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA 73 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~ 73 (305)
...+..+..+++.....+..|.+.+++|.++++.+++.+ ++..+..+..++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 345556667778888899999999999999999998777 67788889999999999
Q ss_pred hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHH
Q 035493 74 FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVP 149 (305)
Q Consensus 74 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~ 149 (305)
+++|++.+++.|++.|++.+...+...+++.|++|+|+|+++.+..+....+|..++|.++.. .+||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988744 4899999998888
Q ss_pred HHHHHH-HhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hccccc
Q 035493 150 CLLQVV-GLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNI 226 (305)
Q Consensus 150 ~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 226 (305)
.++..+ ..+.+||+|+... + .++..++.++..++++ +......+...........+.|.++++ .|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 234 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA---P-----RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSS- 234 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC---C-----CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHH-
T ss_pred HHHHHHHHHHHCcccCCCCc---c-----cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 777665 4566888765210 0 0111111122222222 233333344444456666777777777 68888
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 227 QGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
.+.+.......++.+++.++.+++.||.++
T Consensus 235 ------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 235 ------MTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp ------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=155.03 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=99.3
Q ss_pred hcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhh
Q 035493 44 LGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYV 98 (305)
Q Consensus 44 ~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~ 98 (305)
+|.+.++.+++.+ ++..+.++..++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 9999999988777 788889999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCcc--hhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHH
Q 035493 99 IPIYIAEITPKNV--RGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 99 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~ 156 (305)
..++++|++|+++ |+.+.+..+.+.++|..++|.++.. .|||+.|++.++..++..+.
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 7778888889999999888887744 48999999987766555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-14 Score=123.58 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=103.0
Q ss_pred hhhhhhhc------CCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhc-chhHHHHHH
Q 035493 38 AGITADLG------LSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSK-DAWSLYLGR 85 (305)
Q Consensus 38 ~~~~~~~~------~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 85 (305)
+.+.+++| .+..+.+++.+ ++..+.++..++.++.++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34677889 99999988776 67888889999999999998 999999999
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhH---HHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHHh
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA---NQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~~ 157 (305)
++.|++.+...+...+++.|++|+++|++..+. .....++|..++|.++.. .+||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 888899999999888743 489999999887766655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-13 Score=117.56 Aligned_cols=238 Identities=9% Similarity=0.024 Sum_probs=127.5
Q ss_pred cccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH---HHHHhhcch-hHHH
Q 035493 32 YSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW---LAIAFSKDA-WSLY 82 (305)
Q Consensus 32 ~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~---~~~~~~~~~-~~l~ 82 (305)
...+..|. +++++|.|+.+.+++.+ ++..+..+..++. ....+++.. ..+.
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665 56679999999988777 5555554443321 111222211 1234
Q ss_pred HHHHHHhhcccchhhhhhhhhhhccCC--cchhhHHhHHHHHHHHHHHHHHHhhhh---hhhHHHHHHhHHHHHHHHHHh
Q 035493 83 LGRCSLGIGLELMTYVIPIYIAEITPK--NVRGAFTAANQLLVASGLSVIYLVGTV---VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 83 ~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~---~~wr~~~~~~~~~~~~~~~~~ 157 (305)
..|.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.++.. .+||+.|++.++..++..+..
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 567777777666655555555555543 345666666655666677777766643 379999998777655554444
Q ss_pred hccc-CChHHHHHHHHHHHHHhhCCCcchh---hhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh-c---cccccc
Q 035493 158 FFIP-ESPRWLKKSLKLLYSALRGKTADIS---MESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA-E---LMNIQG 228 (305)
Q Consensus 158 ~~~~-es~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~ 228 (305)
+..+ |+|+. .+++++ ++.++++.+.+ +..++.+ +......+.....+.....+.|.++++. + .+.
T Consensus 185 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (417)
T 2cfq_A 185 FFAKTDAPSS-ATVANA--VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT--- 258 (417)
T ss_dssp CSSCCCCSCS-SCSSSS--SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHT---
T ss_pred HHcCcccccc-cccccc--cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh---
Confidence 4444 43220 000000 00000000000 0111111 1222222222222333334456666542 2 223
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHH
Q 035493 229 NDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
...+.......+...++.++.+++.||+|||+.+..+..+.++..+.
T Consensus 259 ----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 259 ----RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 44566667777888899999999999999999888776666554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=79.85 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=95.0
Q ss_pred cccchhhhhhhh-hcCCchhHHHHHH--------------------------HHHHHHHHHH-HHHHHHHhh--cchhHH
Q 035493 32 YSSPVEAGITAD-LGLSLIEYSVFGS--------------------------AMWLSDLFCI-FGWLAIAFS--KDAWSL 81 (305)
Q Consensus 32 ~~~~~~~~~~~~-~~~s~~~~~~~~s--------------------------~l~~~~~~~~-~~~~~~~~~--~~~~~l 81 (305)
......|.+.++ +|.+..+.+++.+ .+..+..+.. ++.++..+. .+.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344555665555 8999988876555 2233333333 444444444 367778
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH-HHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHH
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS-GLSVIYLVGTV----VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~ 156 (305)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+... .||+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999998998998899999999999999999999999988 98888877643 48999999888877776655
Q ss_pred hhcc
Q 035493 157 LFFI 160 (305)
Q Consensus 157 ~~~~ 160 (305)
....
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-07 Score=78.00 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhc---------chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH
Q 035493 60 LSDLFCIFGWLAIAFSK---------DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI 130 (305)
Q Consensus 60 ~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 130 (305)
.+..+..++..+..+.. +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++......+|..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555432 677788888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh---hhHHHHHHhHHHHHHHHHHh-hcccC
Q 035493 131 YLVGTVV---SWRALALIAAVPCLLQVVGL-FFIPE 162 (305)
Q Consensus 131 ~~i~~~~---~wr~~~~~~~~~~~~~~~~~-~~~~e 162 (305)
+.+.... +++..|...+...++..+.. ...++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988555 56777877777766665444 33444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=69.76 Aligned_cols=71 Identities=17% Similarity=0.063 Sum_probs=54.0
Q ss_pred hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHhHHHHHHHHH-HhhcccCC
Q 035493 95 MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----------VSWRALALIAAVPCLLQVV-GLFFIPES 163 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----------~~wr~~~~~~~~~~~~~~~-~~~~~~es 163 (305)
..+....+.+|.+|.+.|+++.++......+|..+++.+... .++...|++.+..+++..+ .++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 456677899999999999999999988888888777655421 2456677777777776664 45779998
Q ss_pred hH
Q 035493 164 PR 165 (305)
Q Consensus 164 ~~ 165 (305)
..
T Consensus 467 kg 468 (491)
T 4gc0_A 467 KG 468 (491)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-06 Score=72.72 Aligned_cols=108 Identities=8% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH-HHHHHHHHHHHHHHhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA-NQLLVASGLSVIYLVGT 135 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~ 135 (305)
.+..+..+..++....++.++.+.+++..++.|++.+...+....++.|.+|++.|+...+. ++....+|..++|.+..
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 55566666667666677778888888888888888777777778899999999999998888 46666777777776664
Q ss_pred ----hhhhHHHHHHhHHHHHHHHHHh-hcccCCh
Q 035493 136 ----VVSWRALALIAAVPCLLQVVGL-FFIPESP 164 (305)
Q Consensus 136 ----~~~wr~~~~~~~~~~~~~~~~~-~~~~es~ 164 (305)
..|++..|.+.++..++..+.. ...||.+
T Consensus 371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3478888888888777766543 4466543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-05 Score=67.37 Aligned_cols=124 Identities=10% Similarity=-0.098 Sum_probs=88.2
Q ss_pred cchhhhh--hhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 035493 34 SPVEAGI--TADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCS 87 (305)
Q Consensus 34 ~~~~~~~--~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 87 (305)
....|.+ ++.+|.+..+.++..+ .+..+.++..++.++..+.++.+.+... ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 3444444 4455999888876555 6667777777788788888877665544 88
Q ss_pred HhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhh-hHHHHHHhHHHHHHHHHHhhcc
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVS-WRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~-wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
.|++.+...+...++..|.+|++ |+...++.. ...+|..++|.+.. ..| ++..|++.++..++..+..+..
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999866 888887766 45577777777663 446 8888887666554444433333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=70.74 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhh---------cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH
Q 035493 59 WLSDLFCIFGWLAIAFS---------KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129 (305)
Q Consensus 59 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 129 (305)
..+..+.+++.++.++. .+.+.+.+..++.|++.+...+....++.|..|+++|++++++.+....+|..+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 456 (524)
T 2xut_A 377 GAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW 456 (524)
T ss_dssp HTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555543 366778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh------hh---------HHHHHHhHHHHHHHHHHh
Q 035493 130 IYLVGTVV------SW---------RALALIAAVPCLLQVVGL 157 (305)
Q Consensus 130 ~~~i~~~~------~w---------r~~~~~~~~~~~~~~~~~ 157 (305)
++.+.... +| +..|++.+...++..+..
T Consensus 457 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
T 2xut_A 457 VLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVF 499 (524)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 98887443 24 333666666655555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.1e-06 Score=68.41 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALIA 146 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~~ 146 (305)
++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+...+ +|+..+...
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 366777788899999999999999999999998 8899999999999999999888877544 566666553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.31 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=8e-24 Score=181.78 Aligned_cols=257 Identities=10% Similarity=-0.040 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHH
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLF 64 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~ 64 (305)
++.+|.....+.++.+...++....+.+.|.++ |+|+|.+|.|++.+ ++..+.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 98 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 98 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 344677777777778888888888888888775 58999999998887 78888888
Q ss_pred HHHHHHHHHhh----cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----
Q 035493 65 CIFGWLAIAFS----KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV---- 136 (305)
Q Consensus 65 ~~~~~~~~~~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~---- 136 (305)
..++.++++++ ++++.+++.|++.|++.|...+....++.|++|+|+|++++++.+.+..+|..+++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 178 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178 (447)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence 88888888766 4788999999999999999999999999999999999999999999999998888876633
Q ss_pred -hhhHHHHHHhHHHHHHHHHH-hhcccCChHHHHH----H----HHHHHHHhhCCCcchhh-----hHHHH-HHHHHHHH
Q 035493 137 -VSWRALALIAAVPCLLQVVG-LFFIPESPRWLKK----S----LKLLYSALRGKTADISM-----ESADI-RVGVGLMV 200 (305)
Q Consensus 137 -~~wr~~~~~~~~~~~~~~~~-~~~~~es~~~~~~----~----~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~ 200 (305)
.+||+.|++.+...++..+. ..+.+|+|+.... + .++..++..+++.+..+ ..++. .+......
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (447)
T d1pw4a_ 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 258 (447)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHh
Confidence 28999999888777666544 4556665542211 0 00000000000000000 00001 13333334
Q ss_pred HhhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHH
Q 035493 201 MQPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGT 273 (305)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~ 273 (305)
+......+....+.|.++++ .+.+. .+.+.......+..+++.++.+++.||.+||+.........
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 259 VFVYLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325 (447)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred hhhhhhhhcchhhhhhhccccccccc-------chhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhH
Confidence 44444456677777888776 47888 88889999999999999999999999999887655444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.9e-13 Score=110.57 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=136.6
Q ss_pred hcccccccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhH-
Q 035493 27 GCSVGYSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWS- 80 (305)
Q Consensus 27 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~- 80 (305)
.+..+...|.+|. +++++|+|+++.|++.+ .++.+.....++.....+.++...
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3344556777776 67789999999998888 677777777777777777665443
Q ss_pred ---HHHHHHHHhhcccchhhhhhhhhhhccCC--cchhhHHhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHH-HH
Q 035493 81 ---LYLGRCSLGIGLELMTYVIPIYIAEITPK--NVRGAFTAANQLLVASGLSVIYLVGTVV---SWRALALIAAVP-CL 151 (305)
Q Consensus 81 ---l~~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~~---~wr~~~~~~~~~-~~ 151 (305)
.++.+.+.+.+.+...........+..++ +++.+..+........+..+++.++... +|+..+...... .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 179 (417)
T d1pv7a_ 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHH
Confidence 34566666666666555555444444433 2344555666666777777777766443 455555554444 44
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHhhCCCcchhh---hHHHH-HHHHHHHHHhhhhchhHHHHhHHHHHHH----hcc
Q 035493 152 LQVVGLFFIPESPRWLKKSLKLLYSALRGKTADISM---ESADI-RVGVGLMVMQPLVGSAAIACYASYIFAA----AEL 223 (305)
Q Consensus 152 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~ 223 (305)
...+..+..+|+|+...++.++ +.+++...... ..++. ......................+.+... .+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (417)
T d1pv7a_ 180 LAVLLFFAKTDAPSSATVANAV---GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256 (417)
T ss_dssp HHHHHHSSCCCSCSSSCSSHHH---HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhcccccchhhhhhh---hhhcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccccccc
Confidence 4445556666665422111111 11111100000 00000 0111111111111111122222222211 233
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHH
Q 035493 224 MNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIA 281 (305)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~ 281 (305)
+. ...+.......++..++....+++.||.++|+.+..+..+..++.+.+.
T Consensus 257 ~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 307 (417)
T d1pv7a_ 257 GT-------RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-------hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc
Confidence 33 5556677778888999999999999999999999888777766665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=6.8e-09 Score=86.03 Aligned_cols=106 Identities=8% Similarity=0.075 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHH-HHHHHHHHHHHHHhh-
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAAN-QLLVASGLSVIYLVG- 134 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~i~- 134 (305)
.+..+..+..++.+...+.++.+.+.+..++.|++.+...+...+++.|.+|+++|++..+.. +....+|..++|.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G 370 (417)
T d1pv7a_ 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888999999999999999999999999999999999999999999999875 445567777766655
Q ss_pred ---hhhhhHHHHHHhHHHHHHHHHHh-hcccC
Q 035493 135 ---TVVSWRALALIAAVPCLLQVVGL-FFIPE 162 (305)
Q Consensus 135 ---~~~~wr~~~~~~~~~~~~~~~~~-~~~~e 162 (305)
+..||+..|++.++..++..+.. +.+++
T Consensus 371 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45589999998887776665444 44443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=2e-06 Score=71.90 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=64.7
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH-HHHHHHHhh----hhhhhHHHHHHhHHHH
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS-GLSVIYLVG----TVVSWRALALIAAVPC 150 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~----~~~~wr~~~~~~~~~~ 150 (305)
++.+...+.-++.|++.+...+....+..|.+|+++|+.+.++.+....+ |..++|.+. +..||+..|++.+...
T Consensus 341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 420 (447)
T d1pw4a_ 341 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 420 (447)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 46677778888899998888999999999999999999999998776655 455566554 4558999998877776
Q ss_pred HHHHHHhh
Q 035493 151 LLQVVGLF 158 (305)
Q Consensus 151 ~~~~~~~~ 158 (305)
++..++..
T Consensus 421 ~~~~~~~~ 428 (447)
T d1pw4a_ 421 ILAVILLI 428 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66654443
|