Citrus Sinensis ID: 035494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
DEENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
ccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEccccccccccccEEEEEEEcccEEEEEEEEEcccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEcEEEEccccEEEEccEEEEEcccc
ccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccc
deennkiephlivakdgsgnftTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRksvadgvniyDAATFVAIGEGLFAksmgfrniagpenGEAVAARVQSdratfhncrfegykNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
deennkiephlivakdgsgnFTTISEALaavpqkyeGRFVIFVATGIYEESVTVSKRMVNLTiigegsqksiivGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
DEENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
**********LIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMV*****
*****KI**HLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPL*
DEENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
*****KIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DEENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
Q7Y201 614 Probable pectinesterase/p yes no 0.961 0.283 0.626 2e-63
Q9SMY6 609 Putative pectinesterase/p no no 0.961 0.285 0.614 6e-62
Q8GX86 669 Probable pectinesterase/p no no 0.961 0.260 0.494 1e-49
Q3E8Z8 732 Putative pectinesterase/p no no 0.972 0.240 0.477 2e-49
Q43043 374 Pectinesterase OS=Petunia N/A no 0.950 0.459 0.482 2e-46
Q43111 581 Pectinesterase 3 OS=Phase N/A no 0.994 0.309 0.472 1e-45
P83947 545 Pectinesterase/pectineste N/A no 0.961 0.319 0.454 2e-44
Q8GXA1 568 Probable pectinesterase/p no no 0.955 0.304 0.471 2e-44
Q9SG77 561 Putative pectinesterase/p no no 0.939 0.303 0.458 5e-44
Q9FJ21 571 Probable pectinesterase/p no no 0.961 0.304 0.462 7e-44
>sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2 Back     alignment and function desciption
 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 140/174 (80%)

Query: 7   IEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGE 66
           ++P+  VAKDGSG+FTTI++AL A+P+KYEGR++I+V  GIY+E VTV K+  NLT++G+
Sbjct: 298 LKPNATVAKDGSGDFTTINDALRAMPEKYEGRYIIYVKQGIYDEYVTVDKKKANLTMVGD 357

Query: 67  GSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRA 126
           GSQK+I+ G KS A  +  +  ATFVA GEG  A+SMGFRN AGPE  +AVA RVQSDR+
Sbjct: 358 GSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRS 417

Query: 127 TFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPL 180
            F NCRFEGY++ ++A THRQ+YRSC+I GT+DFIFGDAA IFQNC I +RK L
Sbjct: 418 IFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGL 471
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SMY6|PME45_ARATH Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description
>sp|Q43043|PME_PETIN Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1 Back     alignment and function description
>sp|Q43111|PME3_PHAVU Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|Q8GXA1|PME23_ARATH Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3 Back     alignment and function description
>sp|Q9SG77|PME24_ARATH Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
224069280 597 predicted protein [Populus trichocarpa] 0.977 0.296 0.675 1e-67
449449216 594 PREDICTED: putative pectinesterase/pecti 0.972 0.296 0.653 1e-67
224141653 593 predicted protein [Populus trichocarpa] 0.977 0.298 0.666 2e-67
255550285 593 Pectinesterase-1 precursor, putative [Ri 0.988 0.301 0.636 1e-66
6714532 596 pectin methylesterase [Salix gilgiana] 0.988 0.300 0.642 3e-66
356558473 596 PREDICTED: probable pectinesterase/pecti 0.983 0.298 0.612 3e-64
359484243 1456 PREDICTED: uncharacterized protein LOC10 0.988 0.122 0.627 1e-63
297822159 619 pectinesterase family protein [Arabidops 0.961 0.281 0.637 5e-63
356564706 603 PREDICTED: probable pectinesterase/pecti 0.983 0.295 0.612 6e-63
30683114 614 plant invertase/pectin methylesterase in 0.961 0.283 0.626 7e-62
>gi|224069280|ref|XP_002326319.1| predicted protein [Populus trichocarpa] gi|222833512|gb|EEE71989.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 148/179 (82%), Gaps = 2/179 (1%)

Query: 5   NKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVS--KRMVNLT 62
           +K +PH+ VAKDGSG+F TISEALAA+P KYEGR+VIFV  GIY+E+VTV+  K+MVN+T
Sbjct: 281 DKPKPHVTVAKDGSGDFKTISEALAAMPAKYEGRYVIFVKQGIYDETVTVTVTKKMVNIT 340

Query: 63  IIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQ 122
           + G+GSQK+I+ G K+ ADGV  +  ATF  +GEG   K+MGFRN AGPE  +AVA RVQ
Sbjct: 341 MYGDGSQKTIVTGNKNFADGVQTFRTATFAVLGEGFLCKAMGFRNTAGPEKHQAVAIRVQ 400

Query: 123 SDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD 181
           +DRA F NCRFEGY++ ++AQTHRQFYRSC+ITGTVDFIFGDAA IFQNC I VRKPL+
Sbjct: 401 ADRAIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTVDFIFGDAAAIFQNCLITVRKPLE 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449216|ref|XP_004142361.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 45-like [Cucumis sativus] gi|449492711|ref|XP_004159078.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 45-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141653|ref|XP_002324181.1| predicted protein [Populus trichocarpa] gi|222865615|gb|EEF02746.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550285|ref|XP_002516193.1| Pectinesterase-1 precursor, putative [Ricinus communis] gi|223544679|gb|EEF46195.1| Pectinesterase-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|6714532|dbj|BAA89480.1| pectin methylesterase [Salix gilgiana] Back     alignment and taxonomy information
>gi|356558473|ref|XP_003547531.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 13-like [Glycine max] Back     alignment and taxonomy information
>gi|359484243|ref|XP_002273499.2| PREDICTED: uncharacterized protein LOC100257766 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297822159|ref|XP_002878962.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324801|gb|EFH55221.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356564706|ref|XP_003550590.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 13-like [Glycine max] Back     alignment and taxonomy information
>gi|30683114|ref|NP_850077.1| plant invertase/pectin methylesterase inhibitor domain-containing protein [Arabidopsis thaliana] gi|332278139|sp|Q7Y201.2|PME13_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 13; Includes: RecName: Full=Pectinesterase inhibitor 13; AltName: Full=Pectin methylesterase inhibitor 13; Includes: RecName: Full=Pectinesterase 13; Short=PE 13; AltName: Full=Pectin methylesterase 13; Short=AtPME13 gi|330252746|gb|AEC07840.1| plant invertase/pectin methylesterase inhibitor domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
TAIR|locus:2066210 614 AT2G26450 [Arabidopsis thalian 0.961 0.283 0.626 1.1e-57
TAIR|locus:2125959 609 AT4G33230 [Arabidopsis thalian 0.961 0.285 0.614 3.3e-56
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.961 0.260 0.494 6.2e-46
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.972 0.240 0.477 3.2e-45
TAIR|locus:2083308 568 AT3G06830 [Arabidopsis thalian 0.955 0.304 0.471 1.4e-41
TAIR|locus:2155884 571 AT5G49180 [Arabidopsis thalian 0.961 0.304 0.462 2.8e-41
TAIR|locus:2129865 701 AT4G15980 [Arabidopsis thalian 0.983 0.253 0.441 4.2e-41
TAIR|locus:2200156288 AT1G11370 [Arabidopsis thalian 0.961 0.604 0.459 4.6e-41
TAIR|locus:2103227 561 RHS12 "root hair specific 12" 0.939 0.303 0.458 7.5e-41
TAIR|locus:2200076 557 PMEPCRA "methylesterase PCR A" 0.961 0.312 0.436 1.6e-40
TAIR|locus:2066210 AT2G26450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 109/174 (62%), Positives = 140/174 (80%)

Query:     7 IEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGE 66
             ++P+  VAKDGSG+FTTI++AL A+P+KYEGR++I+V  GIY+E VTV K+  NLT++G+
Sbjct:   298 LKPNATVAKDGSGDFTTINDALRAMPEKYEGRYIIYVKQGIYDEYVTVDKKKANLTMVGD 357

Query:    67 GSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRA 126
             GSQK+I+ G KS A  +  +  ATFVA GEG  A+SMGFRN AGPE  +AVA RVQSDR+
Sbjct:   358 GSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRS 417

Query:   127 TFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPL 180
              F NCRFEGY++ ++A THRQ+YRSC+I GT+DFIFGDAA IFQNC I +RK L
Sbjct:   418 IFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGL 471
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2125959 AT4G33230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083308 AT3G06830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129865 AT4G15980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200156 AT1G11370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103227 RHS12 "root hair specific 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.28.309.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-100
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 4e-91
PLN02314 586 PLN02314, PLN02314, pectinesterase 5e-67
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-63
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-61
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 6e-61
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 7e-60
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 6e-59
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 3e-58
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-57
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-57
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 2e-57
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-54
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 4e-54
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 6e-54
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 7e-53
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 7e-51
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 8e-51
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 8e-50
PLN02197 588 PLN02197, PLN02197, pectinesterase 2e-49
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 8e-46
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-42
PLN02773 317 PLN02773, PLN02773, pectinesterase 2e-35
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 5e-29
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 1e-28
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 2e-28
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 3e-27
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 1e-26
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 4e-26
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-23
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 3e-22
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 6e-21
PLN02671 359 PLN02671, PLN02671, pectinesterase 5e-20
PRK10531 422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-08
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  301 bits (773), Expect = e-100
 Identities = 122/179 (68%), Positives = 150/179 (83%)

Query: 3   ENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLT 62
           + + ++P+  VAKDGSGNFTTIS+ALAA+P KYEGR+VI+V  GIY+E+VTV K+MVN+T
Sbjct: 279 DVDALKPNATVAKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYDETVTVDKKMVNVT 338

Query: 63  IIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQ 122
           + G+GSQK+I+ G K+ ADGV  +  ATFVA+GEG  AKSMGFRN AGPE  +AVA RVQ
Sbjct: 339 MYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQ 398

Query: 123 SDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD 181
           SDR+ F NCRFEGY++ ++AQTHRQFYRSC+ITGT+DFIFGDAA IFQNC I VRKPL 
Sbjct: 399 SDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQNCLIFVRKPLP 457

Length = 596
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773 317 pectinesterase 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02176 340 putative pectinesterase 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314 586 pectinesterase 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02665 366 pectinesterase family protein 100.0
PLN02432 293 putative pectinesterase 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02671 359 pectinesterase 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02480 343 Probable pectinesterase 100.0
PRK10531 422 acyl-CoA thioesterase; Provisional 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.69
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.32
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 99.19
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 99.05
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.81
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.54
KOG1777 625 consensus Putative Zn-finger protein [General func 98.04
PLN03010 409 polygalacturonase 97.62
smart00656190 Amb_all Amb_all domain. 97.52
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 97.46
PLN02671359 pectinesterase 97.27
PLN02793 443 Probable polygalacturonase 97.18
PLN03003 456 Probable polygalacturonase At3g15720 97.08
PLN02218 431 polygalacturonase ADPG 97.07
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.04
PLN02634359 probable pectinesterase 97.02
PLN02480343 Probable pectinesterase 96.89
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.78
PLN02773 317 pectinesterase 96.76
PLN02176340 putative pectinesterase 96.73
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 96.72
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.63
PLN02497331 probable pectinesterase 96.52
PLN02432293 putative pectinesterase 96.5
PLN02665366 pectinesterase family protein 96.47
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.46
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.31
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 96.3
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 96.28
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 96.2
PLN02313 587 Pectinesterase/pectinesterase inhibitor 96.18
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.12
PLN02682369 pectinesterase family protein 96.08
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 96.08
PLN02304379 probable pectinesterase 96.07
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.0
smart00722146 CASH Domain present in carbohydrate binding protei 95.99
PLN02916 502 pectinesterase family protein 95.97
PLN02197 588 pectinesterase 95.91
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.9
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 95.83
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 95.81
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 95.77
PLN02301 548 pectinesterase/pectinesterase inhibitor 95.75
PLN02314 586 pectinesterase 95.7
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 95.67
PLN02155 394 polygalacturonase 95.63
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 95.62
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.57
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 95.52
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 95.5
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 95.48
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 94.99
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 94.79
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 94.5
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 94.48
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.07
PLN02218431 polygalacturonase ADPG 93.8
PRK10531 422 acyl-CoA thioesterase; Provisional 93.39
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 93.04
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.39
PLN02793 443 Probable polygalacturonase 92.03
PLN03003 456 Probable polygalacturonase At3g15720 91.76
PLN02155394 polygalacturonase 91.67
PLN03010 409 polygalacturonase 89.59
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 87.45
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 84.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 80.91
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=3e-56  Score=392.84  Aligned_cols=173  Identities=46%  Similarity=0.844  Sum_probs=167.7

Q ss_pred             ccCeEEEeCCCCCCcccHHHHHHhCCCCCCceEEEEEcCcEEEeeEEEeccccCEEEEecCCCceEEEeeeecCCCCccc
Q 035494            7 IEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIY   86 (181)
Q Consensus         7 ~~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~tI~I~~G~Y~E~v~I~~~~~~vtl~G~~~~~~~I~~~~~~~~g~~~~   86 (181)
                      .+++++|++||+|+|+|||+||+++|+++.+|++|+|+||+|+|+|.|++.|++|+|+|++.++|+|+++.+..+|.+++
T Consensus       195 ~~~~vvVa~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~  274 (509)
T PLN02488        195 KIADVVVAKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTF  274 (509)
T ss_pred             ccccEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCce
Confidence            36899999999999999999999999988889999999999999999999999999999999999999998888888999


Q ss_pred             ceeEEEEecCCEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeEEeeeeeeEEecccceeeeccEEecceeeEEcccc
Q 035494           87 DAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAA  166 (181)
Q Consensus        87 ~~a~~~v~~~~~~~~nlti~N~~~~~~~qa~al~~~~~~~~~~~c~~~g~qdTl~~~~~~~~~~~c~I~G~vDfi~G~~~  166 (181)
                      .++||.+.+++|+++||+|+|++++..+||+||++.+|+..|++|+|.|||||||++.+||||++|+|+|+||||||+|+
T Consensus       275 ~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~  354 (509)
T PLN02488        275 YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAA  354 (509)
T ss_pred             eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceE
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEEecCC
Q 035494          167 TIFQNCQIMVRKP  179 (181)
Q Consensus       167 ~~f~~c~i~~~~~  179 (181)
                      ++||+|+|++++|
T Consensus       355 avFq~C~I~sr~~  367 (509)
T PLN02488        355 AVFQFCQIVARQP  367 (509)
T ss_pred             EEEEccEEEEecC
Confidence            9999999999876

>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 7e-42
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 1e-40
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-13
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 1e-13
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 1e-13
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-13
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 114/168 (67%)
Query: 12  IVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKS 71
           +VA+DG+G++ T++EA+AA P K + R+VI+V  G Y+E+V V+   +NL I+G+G   +
Sbjct: 6   VVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYAT 65
Query: 72  IIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNC 131
            I G  +V DG   + +AT  A+G+G   + +  +N AGP   +AVA RV +D +  + C
Sbjct: 66  TITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRC 125
Query: 132 RFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKP 179
           R + Y++ ++A + RQFYR   +TGTVDFIFG+AA +FQ CQ++ RKP
Sbjct: 126 RIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKP 173
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 4e-77
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 6e-76
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 2e-64
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 3e-60
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-54
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  231 bits (592), Expect = 4e-77
 Identities = 74/175 (42%), Positives = 116/175 (66%)

Query: 7   IEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGE 66
           I  + +VA+DG+G++ T++EA+AA P K + R+VI+V  G Y+E+V V+   +NL I+G+
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 67  GSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRA 126
           G   + I G  +V DG   + +AT  A+G+G   + +  +N AGP   +AVA RV +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 127 TFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD 181
             + CR + Y++ ++A + RQFYR   +TGTVDFIFG+AA +FQ CQ++ RKP  
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGK 175
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.76
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.7
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.24
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.56
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 98.33
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 98.25
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.24
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.21
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 98.05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.03
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 98.02
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.94
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 97.94
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 97.92
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.91
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.89
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.87
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.86
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.74
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.7
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.58
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.56
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.5
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.44
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 97.39
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 97.32
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.32
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.28
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.26
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 97.18
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 96.79
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 96.66
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 96.03
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 95.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 95.43
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 95.37
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.34
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 95.14
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 94.73
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 94.66
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.56
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 94.36
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 94.28
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 93.53
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.91
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 91.56
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 91.41
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 91.36
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 90.86
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 90.35
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 86.45
2inu_A 410 Insulin fructotransferase; right-handed parallel b 85.69
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 81.69
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=6.8e-54  Score=362.77  Aligned_cols=173  Identities=43%  Similarity=0.828  Sum_probs=166.1

Q ss_pred             ccCeEEEeCCCCCCcccHHHHHHhCCCCCCceEEEEEcCcEEEeeEEEeccccCEEEEecCCCceEEEeeeecCCCCccc
Q 035494            7 IEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADGVNIY   86 (181)
Q Consensus         7 ~~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~tI~I~~G~Y~E~v~I~~~~~~vtl~G~~~~~~~I~~~~~~~~g~~~~   86 (181)
                      ++++++|+++|+|+|+|||+||++||+++..|++|+|+||+|+|+|.|++.|++|||+|++.++++|+++.+..++.+++
T Consensus         1 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   80 (317)
T 1xg2_A            1 IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTF   80 (317)
T ss_dssp             CCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSG
T ss_pred             CCceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCccc
Confidence            36789999999999999999999999998899999999999999999998888999999999999999998777888999


Q ss_pred             ceeEEEEecCCEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeEEeeeeeeEEecccceeeeccEEecceeeEEcccc
Q 035494           87 DAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAA  166 (181)
Q Consensus        87 ~~a~~~v~~~~~~~~nlti~N~~~~~~~qa~al~~~~~~~~~~~c~~~g~qdTl~~~~~~~~~~~c~I~G~vDfi~G~~~  166 (181)
                      .+++|.+.+++|+++||+|+|++++..+||+||++.+|+..|++|+|+|+|||||++.+|+||++|+|+|+||||||+++
T Consensus        81 ~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~  160 (317)
T 1xg2_A           81 RSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAA  160 (317)
T ss_dssp             GGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCE
T ss_pred             ceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCce
Confidence            99999999999999999999999887899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEEecCC
Q 035494          167 TIFQNCQIMVRKP  179 (181)
Q Consensus       167 ~~f~~c~i~~~~~  179 (181)
                      ++||+|+|+++++
T Consensus       161 avf~~c~i~~~~~  173 (317)
T 1xg2_A          161 VVFQKCQLVARKP  173 (317)
T ss_dssp             EEEESCEEEECCC
T ss_pred             EEEeeeEEEEecc
Confidence            9999999999875
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 181
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 3e-67
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-47
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  205 bits (524), Expect = 3e-67
 Identities = 73/179 (40%), Positives = 118/179 (65%)

Query: 3   ENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLT 62
           E++ + P+++VA DGSG++ T+SEA+AA P+  + R+VI +  G+Y E+V V K+  N+ 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 63  IIGEGSQKSIIVGRKSVADGVNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQ 122
            +G+G   +II   K+V DG   +++AT  A+G G  A+ + F+N AG    +AVA RV 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 123 SDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIFGDAATIFQNCQIMVRKPLD 181
           SD + F+ C    Y+++++  ++RQF+ +C I GTVDFIFG+AA + Q+C I  R+P  
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGS 179
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.42
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.22
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.64
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.67
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.54
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.35
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.34
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.04
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.95
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.9
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.81
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 96.72
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.37
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 95.56
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 95.43
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.36
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.86
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 94.5
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 94.41
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 93.4
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 92.97
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.27
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 91.33
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 90.17
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 86.49
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 86.0
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 85.33
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.5e-57  Score=382.60  Aligned_cols=177  Identities=41%  Similarity=0.817  Sum_probs=169.8

Q ss_pred             ccCcccCeEEEeCCCCCCcccHHHHHHhCCCCCCceEEEEEcCcEEEeeEEEeccccCEEEEecCCCceEEEeeeecCCC
Q 035494            3 ENNKIEPHLIVAKDGSGNFTTISEALAAVPQKYEGRFVIFVATGIYEESVTVSKRMVNLTIIGEGSQKSIIVGRKSVADG   82 (181)
Q Consensus         3 ~~~~~~~~i~V~~~g~g~f~TIq~Ai~aa~~~~~~~~tI~I~~G~Y~E~v~I~~~~~~vtl~G~~~~~~~I~~~~~~~~g   82 (181)
                      |..+..++++|++||+|+|+|||+||+++|.++..|++|+|+||+|+|+|+|++++++|||+|++.+.++|+++.+..++
T Consensus         1 ~~~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           1 ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             CCCSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             CCCcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            34578899999999999999999999999999899999999999999999999999999999999999999999887888


Q ss_pred             CcccceeEEEEecCCEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeEEeeeeeeEEecccceeeeccEEecceeeEE
Q 035494           83 VNIYDAATFVAIGEGLFAKSMGFRNIAGPENGEAVAARVQSDRATFHNCRFEGYKNAVWAQTHRQFYRSCLITGTVDFIF  162 (181)
Q Consensus        83 ~~~~~~a~~~v~~~~~~~~nlti~N~~~~~~~qa~al~~~~~~~~~~~c~~~g~qdTl~~~~~~~~~~~c~I~G~vDfi~  162 (181)
                      .++..+++|.+.+++|+++||+|+|+++...+||+||++.+|+..|++|+|+|+|||||++.+||||++|+|+|+|||||
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIf  160 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF  160 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEE
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEe
Confidence            88999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             ccccEEEEeeEEEecCC
Q 035494          163 GDAATIFQNCQIMVRKP  179 (181)
Q Consensus       163 G~~~~~f~~c~i~~~~~  179 (181)
                      |+++++||+|+|+++++
T Consensus       161 G~~~a~f~~c~i~~~~~  177 (319)
T d1gq8a_         161 GNAAVVLQDCDIHARRP  177 (319)
T ss_dssp             ESCEEEEESCEEEECCC
T ss_pred             cCceeEeecceeeeecC
Confidence            99999999999999865
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure