Citrus Sinensis ID: 035636
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SBA7 | 507 | Sugar transport protein 8 | yes | no | 0.963 | 0.978 | 0.693 | 0.0 | |
| Q9SFG0 | 507 | Sugar transport protein 6 | no | no | 0.963 | 0.978 | 0.681 | 0.0 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.941 | 0.922 | 0.619 | 1e-178 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.933 | 0.935 | 0.544 | 1e-158 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.957 | 0.961 | 0.531 | 1e-158 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.933 | 0.930 | 0.549 | 1e-154 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.959 | 0.944 | 0.551 | 1e-154 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.939 | 0.941 | 0.543 | 1e-150 | |
| Q9LNV3 | 498 | Sugar transport protein 2 | no | no | 0.945 | 0.977 | 0.550 | 1e-149 | |
| Q8GW61 | 504 | Sugar transport protein 1 | no | no | 0.941 | 0.962 | 0.516 | 1e-147 |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function desciption |
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Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/496 (69%), Positives = 411/496 (82%)
Query: 10 GDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH 69
G+ F+ ++TVYV CVIIAA GGL+FGYDIGISGGVTAMDDFL+ FFP VYE+KKHAH
Sbjct: 9 GNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAH 68
Query: 70 EDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA 129
E+NYCKYDNQFLQLFTS LYLAAL+ASF AS CSK GRRPTMQ+AS FFL+GV L + A
Sbjct: 69 ENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGA 128
Query: 130 FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNY 189
+I MLI+GR+ LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI IAN+VNY
Sbjct: 129 VNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNY 188
Query: 190 AMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANV 249
S++HPYGWR++L AG+PAL L GS+ ICETPTSLIER + +EG+ L++IRGV +V
Sbjct: 189 FTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDV 248
Query: 250 DNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ 309
D E++SIVHAC++A QV P++KLMK +SRPP VI +LLQ FQQFTGINAIMFYAPVLFQ
Sbjct: 249 DEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQ 308
Query: 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAI 369
TVGFG++A+LLSAV+TG +NV ST V ++ VDK GRR LLL++ V M I Q +IGIILA
Sbjct: 309 TVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAK 368
Query: 370 WLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM 429
L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFPLETRT GFA AVS NM
Sbjct: 369 DLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNM 428
Query: 430 LFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHW 489
FTF++AQAFLSMLC MK+GIFFFF+ WIVVMGLFA+F +PETKGV +D + + VWK HW
Sbjct: 429 FFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHW 488
Query: 490 FWKRFMDEEDVKPAAK 505
+WKRFM EED K
Sbjct: 489 YWKRFMLEEDEHDVEK 504
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFG0|STP6_ARATH Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1 | Back alignment and function description |
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Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/496 (68%), Positives = 412/496 (83%)
Query: 4 AIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
A+ V + P FE ++TVYV CV+IAA GGL+FGYDIGISGGV+AMDDFL+ FFP V+E
Sbjct: 2 AVVVSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWE 61
Query: 64 KKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
+KKH HE+NYCKYDNQFLQLFTS LYLAAL+ASFVAS CSK GRRPTMQ AS FFL+GV
Sbjct: 62 RKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGV 121
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
LT+ A ++ MLI+GRL LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI I
Sbjct: 122 GLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILI 181
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
AN+VNY + VHPYGWR++L AG+PA+ L GS+ I ETPTSLIER + EEG+ L++I
Sbjct: 182 ANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKI 241
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303
RGV ++++E++SIVHAC++A+QV P+ KL+K +SRPP +I +LLQ+FQQFTGINAIMFY
Sbjct: 242 RGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFY 301
Query: 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363
APVLFQTVGFGS+A+LLSAVITG +NV +T V +Y VD+ GRR LLL++ V M I Q II
Sbjct: 302 APVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLII 361
Query: 364 GIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF 423
GIILA L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFPLETR+AGFA
Sbjct: 362 GIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAV 421
Query: 424 AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTER 483
AVS NM FTF++AQAFLSMLC M++GIFFFF+ WI+VMGLFA F +PETKG+ +D + E
Sbjct: 422 AVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRES 481
Query: 484 VWKQHWFWKRFMDEED 499
VWK HWFWKR+M ED
Sbjct: 482 VWKPHWFWKRYMLPED 497
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
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Score = 624 bits (1610), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/489 (61%), Positives = 377/489 (77%), Gaps = 4/489 (0%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK--KKHAHEDN 72
FE +IT V+ I+AA GGLMFGYD+G+SGGVT+M DFLE+FFP VY K + N
Sbjct: 15 FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSN 74
Query: 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI 132
YCKYDNQ LQLFTS LYLA L A+F AS GRR TM IA FF++GV L + A +
Sbjct: 75 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDL 134
Query: 133 SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS 192
+MLI GR+ LG GVGFANQAVPLFLSE+AP +IRG LNI FQL +TIGI AN+VNY +
Sbjct: 135 AMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTA 194
Query: 193 NVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDN 251
+ +GWRLSL +AG+PAL L VG++ + ETP SL+ERGRL+EG+ VL+RIRG NV+
Sbjct: 195 KIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVEP 254
Query: 252 EFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV 311
EF ++ A +A +V PF L++R +RP LVIA+ LQ+FQQ TGINAIMFYAPVLF T+
Sbjct: 255 EFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTL 314
Query: 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWL 371
GFGS+ASL SAV+TG VNV STLVS+Y+VDK GRR LLLEA VQMF +Q +I IIL + +
Sbjct: 315 GFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKV 374
Query: 372 KPTGS-LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNML 430
T + L+K AI+VVV++C +V FAWSWGPLGWLIPSETFPLETR+AG + V N+L
Sbjct: 375 TDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 434
Query: 431 FTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWF 490
FTF++AQAFLSMLC+ K GIF FF+AW+++M +F MFLLPETK +P++ +TERVWK+HWF
Sbjct: 435 FTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWF 494
Query: 491 WKRFMDEED 499
W RFMD+ +
Sbjct: 495 WARFMDDHN 503
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
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Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/485 (54%), Positives = 359/485 (74%), Gaps = 4/485 (0%)
Query: 19 ITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK-KKHAHEDNYCKYD 77
+T +V+ I+AA GGL+FGYD+GISGGVT+M++FL +FFP+V + KK H+ YCK+D
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 78 NQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLIL 137
NQ LQLFTS LYLAAL+ASF+AS + K GR+ +M I FL+G + + A ++SMLI+
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 138 GRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPY 197
GRL LG+GVGFANQ+ P++LSE+APAKIRGALNI FQ+ ITIGI +AN++NY S + +
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200
Query: 198 GWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIV 257
GWR+SL +A VPA+ + +GS + +TP S++ERG+ EE + +L++IRG NVD+EF ++
Sbjct: 201 GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDLI 260
Query: 258 HACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEA 317
A E A +V P+ +M+ RP L+ + FQQ TGIN IMFYAPVLF+T+GFG +A
Sbjct: 261 DAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDA 320
Query: 318 SLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILA--IWLKPTG 375
+L+SAVITG+VN+ ST VS+YAVD+ GRR L LE +QMFI Q ++G + TG
Sbjct: 321 ALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTG 380
Query: 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLV 435
+L A ++ +CV+V GFAWSWGPLGWL+PSE PLE R AG A VS NM FTFL+
Sbjct: 381 TLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLI 440
Query: 436 AQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWKRFM 495
Q FL+MLC+MK G+F+FFA+ + +M +F FLLPETKGVP++ + RVWKQHWFWK+++
Sbjct: 441 GQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMG-RVWKQHWFWKKYI 499
Query: 496 DEEDV 500
E+ +
Sbjct: 500 PEDAI 504
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/495 (53%), Positives = 352/495 (71%), Gaps = 2/495 (0%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYC 74
++G++T YV+ ++AA GG +FGYDIGISGGVT+MD+FLE FF VYEKKK AHE NYC
Sbjct: 19 YQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESNYC 78
Query: 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM 134
KYDNQ L FTS LYLA L+++ VAS + GRR ++ FL+G L + A +++M
Sbjct: 79 KYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAM 138
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
L+ GR+ LG+G+GF NQAVPL+LSE+AP +RG LN+ FQL TIGIF ANMVNY +
Sbjct: 139 LLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQL 198
Query: 195 HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD 254
P+GWRLSL +A PAL + +G + ETP SL+ERG E GR VL ++RG NV+ E
Sbjct: 199 KPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNAELQ 258
Query: 255 SIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314
+V A E+AN + PF ++++ RP LV+AI + +FQ TGIN+I+FYAPVLFQT+GFG
Sbjct: 259 DMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFG 318
Query: 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374
ASL S+ +TG V V ST +S+ VD+ GRRALL+ +QM I Q I+ +IL +
Sbjct: 319 GNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDN 378
Query: 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL 434
L+K ++IVV+ +C+FV+ F WSWGPLGW IPSE FPLETR+AG + V+ N+LFTF+
Sbjct: 379 QELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFI 438
Query: 435 VAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWKRF 494
+AQAFL +LC K GIF FFA W+ VM +F FLLPETKGVP++ +T +W +HWFWK+
Sbjct: 439 IAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHWFWKKV 497
Query: 495 M-DEEDVKPAAKAPS 508
+ D +++ +K S
Sbjct: 498 LPDATNLEDESKNVS 512
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/486 (54%), Positives = 354/486 (72%), Gaps = 5/486 (1%)
Query: 19 ITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH-EDNYCKYD 77
+TV+V+ I+AA GGL+FGYD+GISGGVT+M++FL +FFP V ++ A E YCK+D
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 78 NQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLIL 137
NQ LQLFTS LYLAAL +SFVAS V K GR+ +M + FL+G + + A +++MLI+
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 138 GRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPY 197
GRL LG+GVGFANQ+ P++LSE+APAKIRGALNI FQ+ ITIGI IAN++NY S +
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 198 GWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIV 257
GWR+SL +A VPA+ + +GS + +TP S++ERG+ E+ R +LQ+IRG NVD EF +
Sbjct: 201 GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDLC 260
Query: 258 HACEMANQVTKPFSKLMKRSS-RPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSE 316
ACE A +V P+ + +++ RP LV + FQQ TGIN IMFYAPVLF+T+GF +
Sbjct: 261 DACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADD 320
Query: 317 ASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376
ASL+SAVITG VNV STLVS+YAVD+ GRR L LE +QM ++Q ++G ++ + TGS
Sbjct: 321 ASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGS 380
Query: 377 --LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL 434
L A ++ +C++V GFAWSWGPLGWL+PSE PLE R AG A VS NM FTFL
Sbjct: 381 GTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFL 440
Query: 435 VAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWKRF 494
+ Q FL+MLC+MK G+F+FF + VM +F FLLPETKGVP++ + RVWKQH FWKR+
Sbjct: 441 IGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMG-RVWKQHPFWKRY 499
Query: 495 MDEEDV 500
M ++ V
Sbjct: 500 MPDDAV 505
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1407), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/502 (55%), Positives = 363/502 (72%), Gaps = 8/502 (1%)
Query: 4 AIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
I GG+ V+ G +T+YV ++AA GGL+FGYDIGISGGVT+MD FL++FFP VY
Sbjct: 6 GIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYR 65
Query: 64 KKKHAHEDN-YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVG 122
KKK N YC+YD+Q L +FTS LYLAALIAS VAS + K GR+ +M F G
Sbjct: 66 KKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAG 125
Query: 123 VVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182
++ AA + MLILGR+ LG G+GFANQ+VPL+LSE+AP K RGALNI FQL ITIGI
Sbjct: 126 AIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGIL 185
Query: 183 IANMVNYAMSNVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQ 241
+AN++NY + + +GWRLSL A VPAL + VGS+ + +TP S+IERG+ EE R L+
Sbjct: 186 VANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEARAHLK 245
Query: 242 RIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIM 301
R+RGV +VD EF +VHA E + +V P+ L++R RP L +AI + FQQ TGIN IM
Sbjct: 246 RVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIM 305
Query: 302 FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361
FYAPVLF T+GFGS+A+L+SAVITGLVNVF+T+VS+Y VDK GRR L LE VQM I Q+
Sbjct: 306 FYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQA 365
Query: 362 I----IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETR 417
I IG + P G L + A++VV+ +C++V GFAWSWGPLGWL+PSE FPLE R
Sbjct: 366 IVAACIGAKFGVDGAP-GDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIR 424
Query: 418 TAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPV 477
+A + VS NM FTF+VAQ FL MLC++K G+F FF+ ++++M +F + LPETKG+P+
Sbjct: 425 SAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPI 484
Query: 478 DAVTERVWKQHWFWKRFMDEED 499
+ + + VWKQHW+W R++ +ED
Sbjct: 485 EEMGQ-VWKQHWYWSRYVVDED 505
|
Ricinus communis (taxid: 3988) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 269/495 (54%), Positives = 359/495 (72%), Gaps = 11/495 (2%)
Query: 9 GGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK--KK 66
GGD +EGR+T +V+ I+AA GGL+FGYDIGISGGV +M+DFL +FFP V + K
Sbjct: 13 GGD---YEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNK 69
Query: 67 HAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLT 126
E YCKYDN+ L LFTS LYLAAL ASF+AS + GR+ +M I S FL G +L
Sbjct: 70 RGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLN 129
Query: 127 SAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANM 186
A ++ MLI+GRL LG+GVGFANQ+VPL+LSE+APAKIRGALNI FQL ITIGI AN+
Sbjct: 130 GLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANI 189
Query: 187 VNYAMSNV-HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRG 245
VNY + + GWRLSL +AGVPA+ + VG + +TP S++ERG E+ + +LQ+IRG
Sbjct: 190 VNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRG 249
Query: 246 VANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305
V++EF+ + +ACE A +V P++ +M+ RP L + FQQ TGIN IMFYAP
Sbjct: 250 TMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAP 309
Query: 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGI 365
VLF+T+GFG++ASL+SAVITGLVNV ST+VS+Y+VDK GRRAL L+ QM +TQ +G
Sbjct: 310 VLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGS 369
Query: 366 ILAIW---LKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFA 422
++ W G+L+ V+A I++ L+C++V GFAWSWGPLGWL+PSE PLE R+AG +
Sbjct: 370 MIG-WKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQS 428
Query: 423 FAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTE 482
VS NM FTF + Q FL+MLC+MK G+F+FFA +++M +F FLLPETKGVP++ +
Sbjct: 429 LNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMG- 487
Query: 483 RVWKQHWFWKRFMDE 497
+VWK+H +W ++ +
Sbjct: 488 KVWKEHRYWGKYSNN 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNV3|STP2_ARATH Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/496 (55%), Positives = 350/496 (70%), Gaps = 9/496 (1%)
Query: 10 GDMPVFEG------RITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
G M V EG ++T V C +IAA GGLMFGYDIGISGGVT+MD FL FFP VYE
Sbjct: 4 GSMNVEEGTKAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYE 63
Query: 64 KKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
KK HE+NYCK+D+Q LQLFTS LYLA + ASF++S V GR+PT+ +AS FFLVG
Sbjct: 64 KKHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGA 123
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
+L +A + MLI GR+ LG G+GF NQ VPLF+SE+APA+ RG LN+ FQ ITIGI
Sbjct: 124 ILNLSAQELGMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILA 183
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
A+ VNY S + GWR SL A VPAL L +GS I ETP SLIERG+ E+G+ VL++I
Sbjct: 184 ASYVNYLTSTLKN-GWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKI 242
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRS-SRPPLVIAILLQVFQQFTGINAIMF 302
RG+ +++ EF+ I +A E+A +V PF +L +S +RPPLV LLQ FQQFTGIN +MF
Sbjct: 243 RGIEDIELEFNEIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMF 302
Query: 303 YAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362
YAPVLFQT+G G ASL+S V+T VN +T++S+ VD AGRR LL+E +QM TQ
Sbjct: 303 YAPVLFQTMGSGDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMT 362
Query: 363 IGIILAIWLKPTGSLN-KVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGF 421
IG IL LK G + +IV++L+CV+V GFAWSWGPLGWL+PSE +PLE R AG+
Sbjct: 363 IGGILLAHLKLVGPITGHAVPLIVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGY 422
Query: 422 AFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVT 481
AV+ NM+ TF++ Q FLS LC ++ +FFFF ++MGLF +F LPETKGVP++ +
Sbjct: 423 FCAVAMNMVCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMA 482
Query: 482 ERVWKQHWFWKRFMDE 497
E+ WK H WK++ +
Sbjct: 483 EKRWKTHPRWKKYFKD 498
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/488 (51%), Positives = 348/488 (71%), Gaps = 3/488 (0%)
Query: 14 VFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKK-HAHEDN 72
++E RIT Y + I+ + GG +FGYD+G+SGGVT+MDDFL+ FFP +Y++K+ H +E +
Sbjct: 17 LYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETD 76
Query: 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI 132
YCKYDNQ L LFTS LY A LI++F AS V GRR ++ + S F +G V+ +AA +I
Sbjct: 77 YCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNI 136
Query: 133 SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS 192
MLILGR+ LGIG+GF NQAVPL+LSE+APAKIRG +N FQL IGI +AN++NY
Sbjct: 137 LMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTE 196
Query: 193 NVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNE 252
+HP+GWRLSL +A VPA+ + +G + + ETP SL+E+G+LE+ + VL ++RG N++ E
Sbjct: 197 QIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 253 FDSIVHACEMANQVTKPFSKLMKRSSRPPLVI-AILLQVFQQFTGINAIMFYAPVLFQTV 311
F +V A + A V PF L+ R +RP LVI AI L FQQ TG+N+I+FYAPV+FQ++
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWL 371
GFG ASL+S+ IT V + ++S+Y+ DK GRR LLLEA V+MF ++G+ LA+
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 372 KPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLF 431
L K +I+VVL+C+FV+ + SWGP+GWL+PSE FPLETR+AG + V N+ F
Sbjct: 377 GEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLFF 436
Query: 432 TFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFW 491
T L+AQ FL LC++K GIF FA I+ MG F FLLPETK VP++ V +W+QHW W
Sbjct: 437 TALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVY-LLWRQHWLW 495
Query: 492 KRFMDEED 499
K+++++ D
Sbjct: 496 KKYVEDVD 503
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 255552339 | 515 | sugar transporter, putative [Ricinus com | 0.990 | 0.990 | 0.735 | 0.0 | |
| 57283536 | 514 | monosaccharide transporter [Populus trem | 0.994 | 0.996 | 0.739 | 0.0 | |
| 224099773 | 484 | predicted protein [Populus trichocarpa] | 0.937 | 0.997 | 0.759 | 0.0 | |
| 224099775 | 495 | predicted protein [Populus trichocarpa] | 0.943 | 0.981 | 0.748 | 0.0 | |
| 15240279 | 507 | sugar transport protein 8 [Arabidopsis t | 0.963 | 0.978 | 0.693 | 0.0 | |
| 297808651 | 507 | hypothetical protein ARALYDRAFT_351641 [ | 0.963 | 0.978 | 0.691 | 0.0 | |
| 297833330 | 507 | hypothetical protein ARALYDRAFT_317457 [ | 0.963 | 0.978 | 0.683 | 0.0 | |
| 15230590 | 507 | sugar transport protein 6 [Arabidopsis t | 0.963 | 0.978 | 0.681 | 0.0 | |
| 224054564 | 499 | predicted protein [Populus trichocarpa] | 0.953 | 0.983 | 0.663 | 0.0 | |
| 147822727 | 506 | hypothetical protein VITISV_025411 [Viti | 0.965 | 0.982 | 0.678 | 0.0 |
| >gi|255552339|ref|XP_002517214.1| sugar transporter, putative [Ricinus communis] gi|223543849|gb|EEF45377.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/511 (73%), Positives = 440/511 (86%), Gaps = 1/511 (0%)
Query: 5 IAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK 64
IA GD P ++G+ITV V+ CVIIAA GGLMFGYDIG+SGGVTAMDDFLE+FFP VYE+
Sbjct: 6 IANKNGDYPEYDGKITVTVIICVIIAACGGLMFGYDIGVSGGVTAMDDFLEKFFPSVYER 65
Query: 65 KKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVV 124
KKHA E+NYCKYDNQ+LQLFTS LY+AALIASF AS+ C+K GR+PTMQ+AS FF+VGVV
Sbjct: 66 KKHALENNYCKYDNQYLQLFTSSLYIAALIASFFASKTCTKFGRKPTMQLASIFFIVGVV 125
Query: 125 LTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIA 184
L++ +I M+I+GR+ LG GVGFANQAVPLFLSELAP K+RGALNISFQLF+TIGI IA
Sbjct: 126 LSALGVNIEMVIVGRVLLGFGVGFANQAVPLFLSELAPVKMRGALNISFQLFVTIGILIA 185
Query: 185 NMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIR 244
N+VNY +HP+G+++SL +AGVPAL L +GS+ I ETPTSL+ER R+EEGR VL++IR
Sbjct: 186 NLVNYYTGKIHPHGYKISLGLAGVPALMLGLGSLLIVETPTSLVERNRIEEGRAVLKKIR 245
Query: 245 GVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304
GV NVD EFDSIVHACEMA QVT P+ KLMKR SRPPLVIAILLQ+FQQFTGINAIMFYA
Sbjct: 246 GVDNVDLEFDSIVHACEMARQVTDPYRKLMKRPSRPPLVIAILLQIFQQFTGINAIMFYA 305
Query: 305 PVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIG 364
PVLFQTVGFG++ASLLS+V+TGLVNV ST+VS+ VD+AGRR LLLE+ VQM ITQ+IIG
Sbjct: 306 PVLFQTVGFGNDASLLSSVVTGLVNVLSTVVSIVVVDRAGRRILLLESCVQMLITQTIIG 365
Query: 365 IILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFA 424
+L LKPTG L EA++VVV+VC++V GFAWSWGPLGWLIPSETFPLETRTAG++FA
Sbjct: 366 ALLLKDLKPTGELPSSEAMVVVVMVCIYVAGFAWSWGPLGWLIPSETFPLETRTAGYSFA 425
Query: 425 VSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERV 484
VS+NML TF++AQAFLSMLC+M+AGIFFFFAAWIVVM LFA F +PETKGVPVD + ERV
Sbjct: 426 VSSNMLCTFIIAQAFLSMLCSMQAGIFFFFAAWIVVMMLFAYFFIPETKGVPVDVMVERV 485
Query: 485 WKQHWFWKRFMDEEDVKPAAKAPSGIHPHLT 515
WKQHWFWKRF D E+ K + P IHP LT
Sbjct: 486 WKQHWFWKRFFDGEE-KEVEQKPKMIHPQLT 515
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|57283536|emb|CAG27608.1| monosaccharide transporter [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/514 (73%), Positives = 448/514 (87%), Gaps = 2/514 (0%)
Query: 3 PAIAV-GGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRV 61
PA+ + GD+P FEGRIT V+ CV+IAA GGLMFGYDIG+SGGVTAMDD L++FF +V
Sbjct: 2 PAVVIANNGDVPEFEGRITFNVIVCVVIAACGGLMFGYDIGVSGGVTAMDDVLKKFFYQV 61
Query: 62 YEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLV 121
+E+K+ AHE+NYCKYDN+ LQLFTS LY+AALIASF+AS+ CSK GR+PTMQ+AS FF+
Sbjct: 62 WERKQQAHENNYCKYDNKKLQLFTSSLYIAALIASFLASKTCSKFGRKPTMQLASLFFIG 121
Query: 122 GVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI 181
GV LT+ A +I MLI+GRL LG GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI
Sbjct: 122 GVALTTFAVNIEMLIIGRLLLGCGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI 181
Query: 182 FIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQ 241
IAN+VNY + +HPYG+R+SL IAGVPAL LC GS++I ETPTSLIER ++E+GR VL+
Sbjct: 182 LIANIVNYVVGKIHPYGFRISLGIAGVPALLLCFGSLAIYETPTSLIERKKVEQGRAVLK 241
Query: 242 RIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIM 301
+IRGV NVD E+DSIVHACE+A+Q+T+P+ +LMKR SRPPLVIAI++QVFQQFTGINAIM
Sbjct: 242 KIRGVDNVDLEYDSIVHACEVASQITQPYHELMKRESRPPLVIAIVMQVFQQFTGINAIM 301
Query: 302 FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361
FYAPVLFQTVGFGS+A+LLS+V+TGLVNV ST+VSV VDK GRRALLLEA VQM ITQ
Sbjct: 302 FYAPVLFQTVGFGSDAALLSSVVTGLVNVLSTIVSVVLVDKVGRRALLLEACVQMLITQC 361
Query: 362 IIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGF 421
IIG +L LK TG+L +A++VV++VCVFV GFAWSWGPLGWLIPSETFPLETRTAGF
Sbjct: 362 IIGGVLMKDLKTTGTLPNGDALVVVIMVCVFVAGFAWSWGPLGWLIPSETFPLETRTAGF 421
Query: 422 AFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVT 481
+FAVS+NMLFTF++AQAFLS LC++KAGIFFFFAAWIVVMGLFA+FLLPETKGVPVD +
Sbjct: 422 SFAVSSNMLFTFVIAQAFLSTLCHLKAGIFFFFAAWIVVMGLFALFLLPETKGVPVDDMV 481
Query: 482 ERVWKQHWFWKRFMDEEDVKPAAKAPSGIHPHLT 515
+RVWKQHWFWKRF ++E V KA IHPH+T
Sbjct: 482 DRVWKQHWFWKRFFNDEQVV-EKKAIEMIHPHVT 514
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099773|ref|XP_002311613.1| predicted protein [Populus trichocarpa] gi|222851433|gb|EEE88980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/483 (75%), Positives = 432/483 (89%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYC 74
FEGRIT V+ CV+IAA GGLMFGYDIG+SGGVTAMDDFL++FF +V+E+K+ AHE+NYC
Sbjct: 2 FEGRITFNVIVCVVIAACGGLMFGYDIGVSGGVTAMDDFLKKFFYQVWERKQQAHENNYC 61
Query: 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM 134
KYDN+ LQLFTS LY+AALIASF+AS+ CSK GR+PTMQ+AS FF+ GV LT+ A +I M
Sbjct: 62 KYDNKKLQLFTSSLYIAALIASFLASKTCSKFGRKPTMQLASLFFIGGVALTTFAVNIEM 121
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
LI+GRL LG GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI IAN+VNY + +
Sbjct: 122 LIIGRLLLGCGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGILIANIVNYVVGKI 181
Query: 195 HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD 254
HPYG+R+SL IAGVPAL LC GS++I ETPTSLIER ++E+GR VL++IRGV NVD E+D
Sbjct: 182 HPYGFRISLGIAGVPALLLCFGSLAIYETPTSLIERKKVEQGRAVLKKIRGVDNVDLEYD 241
Query: 255 SIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314
SIVHACE+A+Q+T+P+ +LMKR SRPPLVIAI++QVFQQFTGINAIMFYAPVLFQTVGFG
Sbjct: 242 SIVHACEVASQITQPYHELMKRESRPPLVIAIVMQVFQQFTGINAIMFYAPVLFQTVGFG 301
Query: 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374
S+A+LLS+V+TGLVNV ST+VSV VDK GRRALLLEA VQM ITQ IIG +L LK T
Sbjct: 302 SDAALLSSVVTGLVNVLSTIVSVVLVDKVGRRALLLEACVQMLITQCIIGGVLMKDLKTT 361
Query: 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL 434
G+L +A++VV++VCVFV GFAWSWGPLGWLIPSETFPLETRTAGF+FAVS+NMLFTF+
Sbjct: 362 GTLPNGDALVVVIMVCVFVAGFAWSWGPLGWLIPSETFPLETRTAGFSFAVSSNMLFTFV 421
Query: 435 VAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWKRF 494
+AQAFLSMLCN++AGIFFFFAAWIVVMGLFA+FLLPETKGVP+D + +RVWKQHWFWKRF
Sbjct: 422 IAQAFLSMLCNLRAGIFFFFAAWIVVMGLFALFLLPETKGVPIDEMVDRVWKQHWFWKRF 481
Query: 495 MDE 497
++
Sbjct: 482 FND 484
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099775|ref|XP_002311614.1| predicted protein [Populus trichocarpa] gi|222851434|gb|EEE88981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/493 (74%), Positives = 435/493 (88%), Gaps = 7/493 (1%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYC 74
FEGRIT V+ CV+IAA GGLMFGYDIG+SGGVTAMDDFL++FF +V+E+K+ AHE+NYC
Sbjct: 1 FEGRITFNVIVCVVIAACGGLMFGYDIGVSGGVTAMDDFLKKFFYQVWERKQQAHENNYC 60
Query: 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM 134
KYDN+ LQLFTS LY+AALIASF+AS+ CSK GR+PTMQ+AS FF+ GV LT+ A +I M
Sbjct: 61 KYDNKKLQLFTSSLYIAALIASFLASKTCSKFGRKPTMQLASLFFIGGVALTTFAVNIEM 120
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
LI+GRL LG GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI IAN+VNY + +
Sbjct: 121 LIIGRLLLGCGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGILIANIVNYVVGKI 180
Query: 195 HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD 254
HPYG+R+SL IAGVPAL LC GS++I ETPTSLIER ++E+GR VL++IRGV NVD E+D
Sbjct: 181 HPYGFRISLGIAGVPALLLCFGSLAIYETPTSLIERKKVEQGRAVLKKIRGVDNVDLEYD 240
Query: 255 SIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314
SIVHACE+A+Q+T+P+ +LMKR SRPPLVIAI++QVFQQFTGINAIMFYAPVLFQTVGFG
Sbjct: 241 SIVHACEVASQITQPYHELMKRESRPPLVIAIVMQVFQQFTGINAIMFYAPVLFQTVGFG 300
Query: 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP- 373
S+A+LLS+V+TGLVNV ST+VSV VDK GRRALLLEA VQM ITQ I I L+I+L P
Sbjct: 301 SDAALLSSVVTGLVNVLSTIVSVVLVDKVGRRALLLEACVQMLITQVWILITLSIFLAPM 360
Query: 374 ------TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST 427
TG+L +A++VV++VCVFV GFAWSWGPLGWLIPSETFPLETRTAGF+FAVS+
Sbjct: 361 NHPINTTGTLPNGDALVVVIMVCVFVAGFAWSWGPLGWLIPSETFPLETRTAGFSFAVSS 420
Query: 428 NMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQ 487
NMLFTF++AQAFLSMLCN++AGIFFFFAAWIVVMGLFA+FLLPETKGVP+D + +RVWKQ
Sbjct: 421 NMLFTFVIAQAFLSMLCNLRAGIFFFFAAWIVVMGLFALFLLPETKGVPIDEMVDRVWKQ 480
Query: 488 HWFWKRFMDEEDV 500
HWFWKRF ++E V
Sbjct: 481 HWFWKRFFNDEQV 493
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240279|ref|NP_197997.1| sugar transport protein 8 [Arabidopsis thaliana] gi|85701285|sp|Q9SBA7.2|STP8_ARATH RecName: Full=Sugar transport protein 8; AltName: Full=Hexose transporter 8 gi|3319343|gb|AAC26232.1| contains similarity to sugar transporters (Pfam: sugar_tr.hmm, score: 395.91) [Arabidopsis thaliana] gi|15487246|emb|CAC69068.1| STP8 protein [Arabidopsis thaliana] gi|332006158|gb|AED93541.1| sugar transport protein 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/496 (69%), Positives = 411/496 (82%)
Query: 10 GDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH 69
G+ F+ ++TVYV CVIIAA GGL+FGYDIGISGGVTAMDDFL+ FFP VYE+KKHAH
Sbjct: 9 GNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAH 68
Query: 70 EDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA 129
E+NYCKYDNQFLQLFTS LYLAAL+ASF AS CSK GRRPTMQ+AS FFL+GV L + A
Sbjct: 69 ENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGA 128
Query: 130 FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNY 189
+I MLI+GR+ LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI IAN+VNY
Sbjct: 129 VNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNY 188
Query: 190 AMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANV 249
S++HPYGWR++L AG+PAL L GS+ ICETPTSLIER + +EG+ L++IRGV +V
Sbjct: 189 FTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDV 248
Query: 250 DNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ 309
D E++SIVHAC++A QV P++KLMK +SRPP VI +LLQ FQQFTGINAIMFYAPVLFQ
Sbjct: 249 DEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQ 308
Query: 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAI 369
TVGFG++A+LLSAV+TG +NV ST V ++ VDK GRR LLL++ V M I Q +IGIILA
Sbjct: 309 TVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAK 368
Query: 370 WLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM 429
L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFPLETRT GFA AVS NM
Sbjct: 369 DLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNM 428
Query: 430 LFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHW 489
FTF++AQAFLSMLC MK+GIFFFF+ WIVVMGLFA+F +PETKGV +D + + VWK HW
Sbjct: 429 FFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHW 488
Query: 490 FWKRFMDEEDVKPAAK 505
+WKRFM EED K
Sbjct: 489 YWKRFMLEEDEHDVEK 504
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808651|ref|XP_002872209.1| hypothetical protein ARALYDRAFT_351641 [Arabidopsis lyrata subsp. lyrata] gi|297318046|gb|EFH48468.1| hypothetical protein ARALYDRAFT_351641 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/496 (69%), Positives = 408/496 (82%)
Query: 10 GDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH 69
G+ F+ ++TVYV CVIIAA GGL+FGYDIGISGGVTAMDDFL+ FFP VYE+KKHAH
Sbjct: 9 GNSKAFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAH 68
Query: 70 EDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA 129
E+NYCKYDNQFLQLFTS LYLAAL+ASF AS CSK GRRPTMQ+AS FFL+GV L + A
Sbjct: 69 ENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGA 128
Query: 130 FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNY 189
+I MLI GR+ LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI IAN+VNY
Sbjct: 129 VNIYMLIFGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNY 188
Query: 190 AMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANV 249
S++HPYGWRL+L AG+PAL L GS+ ICETPTSLIER + +EG+ L++IRGV +V
Sbjct: 189 FTSSIHPYGWRLALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDV 248
Query: 250 DNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ 309
D E++SIVHAC+ A QV P++KLMK +SRPP VI +LLQ FQQ TGINAIMFYAPVLFQ
Sbjct: 249 DEEYESIVHACDFARQVKDPYTKLMKPASRPPFVIGMLLQFFQQLTGINAIMFYAPVLFQ 308
Query: 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAI 369
TVGFG++A+LLSAVITG +NV ST V ++ VDK GRR LLL++ V M + Q +IGIILA
Sbjct: 309 TVGFGNDAALLSAVITGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLVCQLVIGIILAK 368
Query: 370 WLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM 429
L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFP+ETRT GFA AVS NM
Sbjct: 369 DLDVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPVETRTEGFALAVSCNM 428
Query: 430 LFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHW 489
FTF++AQAFLSMLC MK+GIFFFF+ WIVVMGLFA+F +PETKGV +D + + VWK HW
Sbjct: 429 FFTFVIAQAFLSMLCGMKSGIFFFFSGWIVVMGLFALFFVPETKGVAIDDMRDSVWKLHW 488
Query: 490 FWKRFMDEEDVKPAAK 505
+WKRFM EED K
Sbjct: 489 YWKRFMLEEDEHDVEK 504
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833330|ref|XP_002884547.1| hypothetical protein ARALYDRAFT_317457 [Arabidopsis lyrata subsp. lyrata] gi|297330387|gb|EFH60806.1| hypothetical protein ARALYDRAFT_317457 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/496 (68%), Positives = 412/496 (83%)
Query: 4 AIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
A+ V + P FE ++TVYV CV+IAA GGL+FGYDIGISGGV+AMDDFL+ FFP V+E
Sbjct: 2 AVVVSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWE 61
Query: 64 KKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
+KKH HE+NYCKYDNQFLQLFTS LYLAAL+ASF AS CSK GRRPTMQ AS FFL+GV
Sbjct: 62 RKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQFASIFFLIGV 121
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
LT+ A ++ MLI+GRL LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI I
Sbjct: 122 GLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILI 181
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
AN+VNY + VHPYGWR++L AG+PA+ L GS+ I ETPTSLIER + EEG+ L++I
Sbjct: 182 ANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKI 241
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303
RGV ++++E++SIVHAC++A+QV P+ KL+K +SRPP +I +LLQ+FQQFTGINAIMFY
Sbjct: 242 RGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFY 301
Query: 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363
APVLFQTVGFGS+A+LLSAVITG +NV +T V +Y VDK GRR LLL++ V M I Q II
Sbjct: 302 APVLFQTVGFGSDAALLSAVITGTINVLATFVGIYLVDKTGRRFLLLQSSVHMLICQLII 361
Query: 364 GIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF 423
GIILA L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFPLETR+AGFA
Sbjct: 362 GIILAKDLGITGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAV 421
Query: 424 AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTER 483
AVS NM FTF++AQAFLSMLC M++GIFFFF+AWI+VMGLFA F +PETKG+ +D + E
Sbjct: 422 AVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSAWIIVMGLFAFFFIPETKGIAIDDMRES 481
Query: 484 VWKQHWFWKRFMDEED 499
VWK HWFWKR+M ED
Sbjct: 482 VWKPHWFWKRYMLPED 497
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230590|ref|NP_187247.1| sugar transport protein 6 [Arabidopsis thaliana] gi|75337175|sp|Q9SFG0.1|STP6_ARATH RecName: Full=Sugar transport protein 6; AltName: Full=Hexose transporter 6 gi|6671961|gb|AAF23220.1|AC013454_7 putative hexose transporter [Arabidopsis thaliana] gi|15487256|emb|CAC69073.1| STP6 protein [Arabidopsis thaliana] gi|332640802|gb|AEE74323.1| sugar transport protein 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/496 (68%), Positives = 412/496 (83%)
Query: 4 AIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
A+ V + P FE ++TVYV CV+IAA GGL+FGYDIGISGGV+AMDDFL+ FFP V+E
Sbjct: 2 AVVVSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWE 61
Query: 64 KKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
+KKH HE+NYCKYDNQFLQLFTS LYLAAL+ASFVAS CSK GRRPTMQ AS FFL+GV
Sbjct: 62 RKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGV 121
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
LT+ A ++ MLI+GRL LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI I
Sbjct: 122 GLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILI 181
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
AN+VNY + VHPYGWR++L AG+PA+ L GS+ I ETPTSLIER + EEG+ L++I
Sbjct: 182 ANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKI 241
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303
RGV ++++E++SIVHAC++A+QV P+ KL+K +SRPP +I +LLQ+FQQFTGINAIMFY
Sbjct: 242 RGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFY 301
Query: 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363
APVLFQTVGFGS+A+LLSAVITG +NV +T V +Y VD+ GRR LLL++ V M I Q II
Sbjct: 302 APVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLII 361
Query: 364 GIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF 423
GIILA L TG+L + +A++VV+ VCV+VMGFAWSWGPLGWLIPSETFPLETR+AGFA
Sbjct: 362 GIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAV 421
Query: 424 AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTER 483
AVS NM FTF++AQAFLSMLC M++GIFFFF+ WI+VMGLFA F +PETKG+ +D + E
Sbjct: 422 AVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRES 481
Query: 484 VWKQHWFWKRFMDEED 499
VWK HWFWKR+M ED
Sbjct: 482 VWKPHWFWKRYMLPED 497
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054564|ref|XP_002298323.1| predicted protein [Populus trichocarpa] gi|222845581|gb|EEE83128.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/494 (66%), Positives = 392/494 (79%), Gaps = 3/494 (0%)
Query: 8 GGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKH 67
GG D+P ++T V C IIAA GGLMFGYDIGISGGVT+MDDFLE+FFP VY KK
Sbjct: 6 GGRDLP---SKLTWQVFICCIIAASGGLMFGYDIGISGGVTSMDDFLEKFFPSVYLKKHE 62
Query: 68 AHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS 127
A EDNYCKYDNQFLQLFTS LYLAA+++SF+AS C K GR+PT+Q AS FFL G VL +
Sbjct: 63 AREDNYCKYDNQFLQLFTSSLYLAAIVSSFIASFFCKKFGRKPTIQAASIFFLAGAVLNA 122
Query: 128 AAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMV 187
A + MLI GR+ LG+GVGF NQAVPLF+SE+APAK RG LNI FQL ITIGI +AN++
Sbjct: 123 VAVELGMLIAGRICLGVGVGFGNQAVPLFISEIAPAKYRGGLNICFQLLITIGILMANLI 182
Query: 188 NYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVA 247
NYA S VHPYGWR+SL A VPA+ L +GS+ I ETPTSL+ERG+ EE VL++IRGV
Sbjct: 183 NYATSKVHPYGWRISLGCAAVPAIILAIGSLVIMETPTSLLERGKNEEALRVLRKIRGVD 242
Query: 248 NVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVL 307
NVD E+ I++A E+A QV PF LM RS+RP L+ +LQ FQQFTGIN +MFYAPVL
Sbjct: 243 NVDKEYAEILNAIELAKQVKHPFRNLMSRSNRPQLICGTVLQFFQQFTGINVVMFYAPVL 302
Query: 308 FQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIIL 367
FQT+G+GS+ SLLSAV+T LVNV STLV+V+ VD GRR LL+EA +QM QSI+G IL
Sbjct: 303 FQTMGYGSDGSLLSAVVTDLVNVLSTLVAVFLVDIIGRRVLLIEACLQMLAAQSIMGRIL 362
Query: 368 AIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST 427
A+ LK + K A +VV+LVCVFV GFAWSWGPLGWLIPSE FPLETR+AGF FAV
Sbjct: 363 AVHLKSANIMPKGSAKLVVILVCVFVSGFAWSWGPLGWLIPSEIFPLETRSAGFFFAVGM 422
Query: 428 NMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQ 487
NM TFLVAQAFL+MLC+M++GIFFFFAAWIVVMG+FA+F LPETKG+P+D + ERVWK+
Sbjct: 423 NMFCTFLVAQAFLTMLCHMRSGIFFFFAAWIVVMGIFAIFFLPETKGIPIDEMNERVWKK 482
Query: 488 HWFWKRFMDEEDVK 501
HWFWKR+ ++ D+
Sbjct: 483 HWFWKRYYEDSDIN 496
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822727|emb|CAN61764.1| hypothetical protein VITISV_025411 [Vitis vinifera] gi|310877806|gb|ADP37134.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/497 (67%), Positives = 406/497 (81%)
Query: 10 GDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH 69
G+ FE RIT YVV C I+AAFGGLMFGYDIGISGGVT MD FL +FFP VY++K A
Sbjct: 6 GNSMKFESRITFYVVLCWILAAFGGLMFGYDIGISGGVTGMDGFLIKFFPIVYKRKLRAK 65
Query: 70 EDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA 129
EDNYCKYD+Q+LQLFTS LYLAALI+SF AS+VC+K GR+PT+ +AS FFL+G L++ A
Sbjct: 66 EDNYCKYDDQYLQLFTSSLYLAALISSFPASKVCTKFGRKPTILVASVFFLLGSGLSAGA 125
Query: 130 FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNY 189
+ MLILGR++LG GVGF N+AVPLFLSE+AP + RGA+NI FQLFITIGI IAN+VNY
Sbjct: 126 HQMWMLILGRISLGCGVGFGNEAVPLFLSEIAPVEYRGAVNILFQLFITIGILIANLVNY 185
Query: 190 AMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANV 249
S VHP+GWRLSL +A +PA L +GS+ I ETPTSL+ER E+GR L++IRGV NV
Sbjct: 186 GTSKVHPWGWRLSLGLAAIPATGLFIGSLIIPETPTSLVERNHEEKGRKTLKKIRGVDNV 245
Query: 250 DNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ 309
D EF+ I ACE+A +V P+ LMK SS PPL+I I++QVFQQFTGINAIMFYAP+LFQ
Sbjct: 246 DPEFEQIKVACEIARRVKHPYRSLMKLSSMPPLIIGIMMQVFQQFTGINAIMFYAPILFQ 305
Query: 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAI 369
TVGF ++ASLLSA+ITGLVNVF T+VS+YAVDK GRR LLL+A VQMF++Q+ IG IL
Sbjct: 306 TVGFKNDASLLSAIITGLVNVFCTVVSIYAVDKVGRRLLLLQACVQMFVSQTAIGGILLA 365
Query: 370 WLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM 429
L T SL K +A +VVVLVCV+V FAWSWGPLGWLIPSETFPLETRTAGFAFAVS+NM
Sbjct: 366 KLNATNSLPKGQAWVVVVLVCVYVSSFAWSWGPLGWLIPSETFPLETRTAGFAFAVSSNM 425
Query: 430 LFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHW 489
LFTF++AQ+FLSM+C+M+AGIF FFA WIV+MG+F +FLLPETKGVP+D + ERVWK+H
Sbjct: 426 LFTFVIAQSFLSMMCHMRAGIFLFFAGWIVIMGIFVLFLLPETKGVPIDEMKERVWKKHP 485
Query: 490 FWKRFMDEEDVKPAAKA 506
WK+FM ++ A K
Sbjct: 486 IWKKFMSDDADDRAKKT 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.966 | 0.982 | 0.679 | 5.2e-184 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.963 | 0.978 | 0.667 | 8.7e-182 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.941 | 0.922 | 0.609 | 7.7e-158 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.961 | 0.963 | 0.531 | 1.9e-145 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.959 | 0.955 | 0.538 | 1.1e-142 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.951 | 0.955 | 0.520 | 1.7e-139 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.943 | 0.945 | 0.531 | 1.2e-138 | |
| TAIR|locus:2025102 | 498 | STP2 "sugar transporter 2" [Ar | 0.935 | 0.967 | 0.542 | 5.8e-137 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.959 | 0.946 | 0.506 | 1e-132 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.941 | 0.962 | 0.502 | 2.2e-130 |
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1785 (633.4 bits), Expect = 5.2e-184, P = 5.2e-184
Identities = 339/499 (67%), Positives = 402/499 (80%)
Query: 1 MAPAIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPR 60
MA I+ G+ F+ ++TVYV CVIIAA GGL+FGYDIGISGGVTAMDDFL+ FFP
Sbjct: 1 MAVVIS-SNGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPS 59
Query: 61 VYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFL 120
VYE+KKHAHE+NYCKYDNQFLQLFTS LYLAAL+ASF AS CSK GRRPTMQ+AS FFL
Sbjct: 60 VYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFL 119
Query: 121 VGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180
+GV L + A +I MLI+GR+ LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIG
Sbjct: 120 IGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIG 179
Query: 181 IFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVL 240
I IAN+VNY S++HPYGWR++L AG+PAL L GS+ ICETPTSLIER + +EG+ L
Sbjct: 180 ILIANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETL 239
Query: 241 QRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAI 300
++IRGV +VD E++SIVHAC++A QV P++KLMK +SRPP VI +LLQ FQQFTGINAI
Sbjct: 240 KKIRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAI 299
Query: 301 MFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360
MFYAPVLFQTVGFG++A+LLSAV+TG +NV ST V ++ VDK GRR LLL++ V M I Q
Sbjct: 300 MFYAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQ 359
Query: 361 SIIGIILAIWLKPTGSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAG 420
+IGIILA L TG+L + MGFAWSWGPLGWLIPSETFPLETRT G
Sbjct: 360 LVIGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEG 419
Query: 421 FAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAV 480
FA AVS NM FTF++AQAFLSMLC MK+GIFFFF+ WIVVMGLFA+F +PETKGV +D +
Sbjct: 420 FALAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDM 479
Query: 481 TERVWKQHWFWKRFMDEED 499
+ VWK HW+WKRFM EED
Sbjct: 480 RDSVWKLHWYWKRFMLEED 498
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1764 (626.0 bits), Expect = 8.7e-182, P = 8.7e-182
Identities = 331/496 (66%), Positives = 400/496 (80%)
Query: 4 AIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYE 63
A+ V + P FE ++TVYV CV+IAA GGL+FGYDIGISGGV+AMDDFL+ FFP V+E
Sbjct: 2 AVVVSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWE 61
Query: 64 KKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
+KKH HE+NYCKYDNQFLQLFTS LYLAAL+ASFVAS CSK GRRPTMQ AS FFL+GV
Sbjct: 62 RKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGV 121
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
LT+ A ++ MLI+GRL LG GVGF NQAVPLFLSE+APA++RG LNI FQL +TIGI I
Sbjct: 122 GLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILI 181
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
AN+VNY + VHPYGWR++L AG+PA+ L GS+ I ETPTSLIER + EEG+ L++I
Sbjct: 182 ANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKI 241
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303
RGV ++++E++SIVHAC++A+QV P+ KL+K +SRPP +I +LLQ+FQQFTGINAIMFY
Sbjct: 242 RGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFY 301
Query: 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363
APVLFQTVGFGS+A+LLSAVITG +NV +T V +Y VD+ GRR LLL++ V M I Q II
Sbjct: 302 APVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLII 361
Query: 364 GIILAIWLKPTGSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGFAF 423
GIILA L TG+L + MGFAWSWGPLGWLIPSETFPLETR+AGFA
Sbjct: 362 GIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAV 421
Query: 424 AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTER 483
AVS NM FTF++AQAFLSMLC M++GIFFFF+ WI+VMGLFA F +PETKG+ +D + E
Sbjct: 422 AVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRES 481
Query: 484 VWKQHWFWKRFMDEED 499
VWK HWFWKR+M ED
Sbjct: 482 VWKPHWFWKRYMLPED 497
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1538 (546.5 bits), Expect = 7.7e-158, P = 7.7e-158
Identities = 298/489 (60%), Positives = 368/489 (75%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKK-KHAHED-N 72
FE +IT V+ I+AA GGLMFGYD+G+SGGVT+M DFLE+FFP VY K A +D N
Sbjct: 15 FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSN 74
Query: 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI 132
YCKYDNQ LQLFTS LYLA L A+F AS GRR TM IA FF++GV L + A +
Sbjct: 75 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDL 134
Query: 133 SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS 192
+MLI GR+ LG GVGFANQAVPLFLSE+AP +IRG LNI FQL +TIGI AN+VNY +
Sbjct: 135 AMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTA 194
Query: 193 NVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDN 251
+ +GWRLSL +AG+PAL L VG++ + ETP SL+ERGRL+EG+ VL+RIRG NV+
Sbjct: 195 KIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVEP 254
Query: 252 EFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV 311
EF ++ A +A +V PF L++R +RP LVIA+ LQ+FQQ TGINAIMFYAPVLF T+
Sbjct: 255 EFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTL 314
Query: 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWL 371
GFGS+ASL SAV+TG VNV STLVS+Y+VDK GRR LLLEA VQMF +Q +I IIL + +
Sbjct: 315 GFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKV 374
Query: 372 KPTGS-LNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNML 430
T + L+K FAWSWGPLGWLIPSETFPLETR+AG + V N+L
Sbjct: 375 TDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 434
Query: 431 FTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWF 490
FTF++AQAFLSMLC+ K GIF FF+AW+++M +F MFLLPETK +P++ +TERVWK+HWF
Sbjct: 435 FTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWF 494
Query: 491 WKRFMDEED 499
W RFMD+ +
Sbjct: 495 WARFMDDHN 503
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
Identities = 265/499 (53%), Positives = 359/499 (71%)
Query: 5 IAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK 64
++ GGG +EG +T +V+ I+AA GGL+FGYD+GISGGVT+M++FL +FFP+V +
Sbjct: 7 VSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQ 66
Query: 65 KKHA-HEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV 123
K A H+ YCK+DNQ LQLFTS LYLAAL+ASF+AS + K GR+ +M I FL+G
Sbjct: 67 MKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGA 126
Query: 124 VLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183
+ + A ++SMLI+GRL LG+GVGFANQ+ P++LSE+APAKIRGALNI FQ+ ITIGI +
Sbjct: 127 LFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILV 186
Query: 184 ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
AN++NY S + +GWR+SL +A VPA+ + +GS + +TP S++ERG+ EE + +L++I
Sbjct: 187 ANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKI 246
Query: 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303
RG NVD+EF ++ A E A +V P+ +M+ RP L+ + FQQ TGIN IMFY
Sbjct: 247 RGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFY 306
Query: 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363
APVLF+T+GFG +A+L+SAVITG+VN+ ST VS+YAVD+ GRR L LE +QMFI Q ++
Sbjct: 307 APVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLV 366
Query: 364 GIILA--IWLKPTGSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGF 421
G + TG+L GFAWSWGPLGWL+PSE PLE R AG
Sbjct: 367 GSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQ 426
Query: 422 AFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVT 481
A VS NM FTFL+ Q FL+MLC+MK G+F+FFA+ + +M +F FLLPETKGVP++ +
Sbjct: 427 AINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMG 486
Query: 482 ERVWKQHWFWKRFMDEEDV 500
RVWKQHWFWK+++ E+ +
Sbjct: 487 -RVWKQHWFWKKYIPEDAI 504
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 270/501 (53%), Positives = 355/501 (70%)
Query: 5 IAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK 64
++ GGG +EG +TV+V+ I+AA GGL+FGYD+GISGGVT+M++FL +FFP V +K
Sbjct: 7 VSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEV-DK 65
Query: 65 KKHA--HEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVG 122
+ H E YCK+DNQ LQLFTS LYLAAL +SFVAS V K GR+ +M + FL+G
Sbjct: 66 QMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIG 125
Query: 123 VVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182
+ + A +++MLI+GRL LG+GVGFANQ+ P++LSE+APAKIRGALNI FQ+ ITIGI
Sbjct: 126 SLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGIL 185
Query: 183 IANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQR 242
IAN++NY S + GWR+SL +A VPA+ + +GS + +TP S++ERG+ E+ R +LQ+
Sbjct: 186 IANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQK 245
Query: 243 IRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSS-RPPLVIAILLQVFQQFTGINAIM 301
IRG NVD EF + ACE A +V P+ + +++ RP LV + FQQ TGIN IM
Sbjct: 246 IRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIM 305
Query: 302 FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361
FYAPVLF+T+GF +ASL+SAVITG VNV STLVS+YAVD+ GRR L LE +QM ++Q
Sbjct: 306 FYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQI 365
Query: 362 IIGIILAIWLKPTGS--LNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTA 419
++G ++ + TGS L GFAWSWGPLGWL+PSE PLE R A
Sbjct: 366 VVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPA 425
Query: 420 GFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDA 479
G A VS NM FTFL+ Q FL+MLC+MK G+F+FF + VM +F FLLPETKGVP++
Sbjct: 426 GQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEE 485
Query: 480 VTERVWKQHWFWKRFMDEEDV 500
+ RVWKQH FWKR+M ++ V
Sbjct: 486 MG-RVWKQHPFWKRYMPDDAV 505
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
Identities = 256/492 (52%), Positives = 340/492 (69%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYC 74
++G++T YV+ ++AA GG +FGYDIGISGGVT+MD+FLE FF VYEKKK AHE NYC
Sbjct: 19 YQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESNYC 78
Query: 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM 134
KYDNQ L FTS LYLA L+++ VAS + GRR ++ FL+G L + A +++M
Sbjct: 79 KYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAM 138
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
L+ GR+ LG+G+GF NQAVPL+LSE+AP +RG LN+ FQL TIGIF ANMVNY +
Sbjct: 139 LLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQL 198
Query: 195 HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD 254
P+GWRLSL +A PAL + +G + ETP SL+ERG E GR VL ++RG NV+ E
Sbjct: 199 KPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNAELQ 258
Query: 255 SIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314
+V A E+AN + PF ++++ RP LV+AI + +FQ TGIN+I+FYAPVLFQT+GFG
Sbjct: 259 DMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFG 318
Query: 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374
ASL S+ +TG V V ST +S+ VD+ GRRALL+ +QM I Q I+ +IL +
Sbjct: 319 GNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDN 378
Query: 375 GSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL 434
L+K + F WSWGPLGW IPSE FPLETR+AG + V+ N+LFTF+
Sbjct: 379 QELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFI 438
Query: 435 VAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWKRF 494
+AQAFL +LC K GIF FFA W+ VM +F FLLPETKGVP++ +T +W +HWFWK+
Sbjct: 439 IAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHWFWKKV 497
Query: 495 M-DEEDVKPAAK 505
+ D +++ +K
Sbjct: 498 LPDATNLEDESK 509
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
Identities = 264/497 (53%), Positives = 349/497 (70%)
Query: 9 GGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEK--KK 66
GGD +EGR+T +V+ I+AA GGL+FGYDIGISGGV +M+DFL +FFP V + K
Sbjct: 13 GGD---YEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNK 69
Query: 67 HAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLT 126
E YCKYDN+ L LFTS LYLAAL ASF+AS + GR+ +M I S FL G +L
Sbjct: 70 RGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLN 129
Query: 127 SAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANM 186
A ++ MLI+GRL LG+GVGFANQ+VPL+LSE+APAKIRGALNI FQL ITIGI AN+
Sbjct: 130 GLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANI 189
Query: 187 VNYAMSNV-HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRG 245
VNY + + GWRLSL +AGVPA+ + VG + +TP S++ERG E+ + +LQ+IRG
Sbjct: 190 VNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRG 249
Query: 246 VANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305
V++EF+ + +ACE A +V P++ +M+ RP L + FQQ TGIN IMFYAP
Sbjct: 250 TMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAP 309
Query: 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGI 365
VLF+T+GFG++ASL+SAVITGLVNV ST+VS+Y+VDK GRRAL L+ QM +TQ +G
Sbjct: 310 VLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGS 369
Query: 366 ILAIW---LKPTGSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGFA 422
++ W G+L+ GFAWSWGPLGWL+PSE PLE R+AG +
Sbjct: 370 MIG-WKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQS 428
Query: 423 FAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTE 482
VS NM FTF + Q FL+MLC+MK G+F+FFA +++M +F FLLPETKGVP++ +
Sbjct: 429 LNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMG- 487
Query: 483 RVWKQHWFWKRFMDEED 499
+VWK+H +W ++ + +D
Sbjct: 488 KVWKEHRYWGKYSNNDD 504
|
|
| TAIR|locus:2025102 STP2 "sugar transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
Identities = 263/485 (54%), Positives = 336/485 (69%)
Query: 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYC 74
F ++T V C +IAA GGLMFGYDIGISGGVT+MD FL FFP VYEKK HE+NYC
Sbjct: 15 FPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENNYC 74
Query: 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM 134
K+D+Q LQLFTS LYLA + ASF++S V GR+PT+ +AS FFLVG +L +A + M
Sbjct: 75 KFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQELGM 134
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
LI GR+ LG G+GF NQ VPLF+SE+APA+ RG LN+ FQ ITIGI A+ VNY S +
Sbjct: 135 LIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYVNYLTSTL 194
Query: 195 HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD 254
GWR SL A VPAL L +GS I ETP SLIERG+ E+G+ VL++IRG+ +++ EF+
Sbjct: 195 KN-GWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIRGIEDIELEFN 253
Query: 255 SIVHACEMANQVTKPFSKLMKRS-SRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGF 313
I +A E+A +V PF +L +S +RPPLV LLQ FQQFTGIN +MFYAPVLFQT+G
Sbjct: 254 EIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFYAPVLFQTMGS 313
Query: 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373
G ASL+S V+T VN +T++S+ VD AGRR LL+E +QM TQ IG IL LK
Sbjct: 314 GDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMTIGGILLAHLKL 373
Query: 374 TGSLNKXXXXXXXXXXXXXXM-GFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT 432
G + + GFAWSWGPLGWL+PSE +PLE R AG+ AV+ NM+ T
Sbjct: 374 VGPITGHAVPLIVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCAVAMNMVCT 433
Query: 433 FLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFWK 492
F++ Q FLS LC ++ +FFFF ++MGLF +F LPETKGVP++ + E+ WK H WK
Sbjct: 434 FIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKRWKTHPRWK 493
Query: 493 RFMDE 497
++ +
Sbjct: 494 KYFKD 498
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| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 254/501 (50%), Positives = 343/501 (68%)
Query: 2 APAIAVGGGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRV 61
A VG G + G++T +V+ ++AA GGL+FGYDIGISGGVT+M FL+RFFP V
Sbjct: 3 AGGFVVGDGQK-AYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSV 61
Query: 62 YEKKKH-AHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFL 120
Y K++ A + YC+YD+ L +FTS LYLAALI+S VAS V K GRR +M F
Sbjct: 62 YRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFC 121
Query: 121 VGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180
G ++ A H+ MLI+GR+ LG G+GFANQAVPL+LSE+AP K RGALNI FQL ITIG
Sbjct: 122 AGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIG 181
Query: 181 IFIANMVNYAMSNVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVV 239
I +A ++NY + + +GWRLSL A VPAL + +GS+ + +TP S+IERG+ EE +
Sbjct: 182 ILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTK 241
Query: 240 LQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINA 299
L+RIRGV +V EFD +V A + + + P+ L++R RP L +A+++ FQQ TGIN
Sbjct: 242 LRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINV 301
Query: 300 IMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359
IMFYAPVLF T+GF ++ASL+SAV+TG VNV +TLVS+Y VD+ GRR L LE QM I
Sbjct: 302 IMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLIC 361
Query: 360 QSIIGIILA--IWLKPT-GSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLET 416
Q+++ + + T G L K GFAWSWGPLGWL+PSE FPLE
Sbjct: 362 QAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEI 421
Query: 417 RTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVP 476
R+A + VS NM+FTF++AQ FL+MLC++K G+F FA ++VVM +F LPETKG+P
Sbjct: 422 RSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIP 481
Query: 477 VDAVTERVWKQHWFWKRFMDE 497
++ + + VW+ HW+W RF+++
Sbjct: 482 IEEMGQ-VWRSHWYWSRFVED 501
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
Identities = 245/488 (50%), Positives = 337/488 (69%)
Query: 14 VFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKK-HAHEDN 72
++E RIT Y + I+ + GG +FGYD+G+SGGVT+MDDFL+ FFP +Y++K+ H +E +
Sbjct: 17 LYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETD 76
Query: 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI 132
YCKYDNQ L LFTS LY A LI++F AS V GRR ++ + S F +G V+ +AA +I
Sbjct: 77 YCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNI 136
Query: 133 SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS 192
MLILGR+ LGIG+GF NQAVPL+LSE+APAKIRG +N FQL IGI +AN++NY
Sbjct: 137 LMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTE 196
Query: 193 NVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNE 252
+HP+GWRLSL +A VPA+ + +G + + ETP SL+E+G+LE+ + VL ++RG N++ E
Sbjct: 197 QIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 253 FDSIVHACEMANQVTKPFSKLMKRSSRPPLVI-AILLQVFQQFTGINAIMFYAPVLFQTV 311
F +V A + A V PF L+ R +RP LVI AI L FQQ TG+N+I+FYAPV+FQ++
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWL 371
GFG ASL+S+ IT V + ++S+Y+ DK GRR LLLEA V+MF ++G+ LA+
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 372 KPTGSLNKXXXXXXXXXXXXXXMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLF 431
L K + + SWGP+GWL+PSE FPLETR+AG + V N+ F
Sbjct: 377 GEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLFF 436
Query: 432 TFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERVWKQHWFW 491
T L+AQ FL LC++K GIF FA I+ MG F FLLPETK VP++ V +W+QHW W
Sbjct: 437 TALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVY-LLWRQHWLW 495
Query: 492 KRFMDEED 499
K+++++ D
Sbjct: 496 KKYVEDVD 503
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3232 | 0.8271 | 0.9321 | yes | no |
| Q41144 | STC_RICCO | No assigned EC number | 0.5517 | 0.9592 | 0.9445 | N/A | no |
| Q9SBA7 | STP8_ARATH | No assigned EC number | 0.6935 | 0.9631 | 0.9783 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5049 | 0.9669 | 0.9764 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5156 | 0.9281 | 0.9157 | N/A | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3110 | 0.8310 | 0.9224 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.VIII.1998.1 | hypothetical protein (484 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00400011 | hypothetical protein (117 aa) | • | 0.482 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-115 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-106 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-60 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-08 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.002 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.002 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.002 | |
| pfam06609 | 598 | pfam06609, TRI12, Fungal trichothecene efflux pump | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-115
Identities = 155/462 (33%), Positives = 245/462 (53%), Gaps = 20/462 (4%)
Query: 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFT 85
++AA GG +FGYD G+ G + F +RF C L
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIG--------ACAASTVLSGLIV 52
Query: 86 SCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA--FHISMLILGRLALG 143
S + LI S A ++ + GR+ ++ I + F++G +L A MLI+GR+ +G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 144 IGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPY-GWRLS 202
+GVG + VP+++SE+AP K+RGAL +QL IT GI +A ++ ++ GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 203 LAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEM 262
L + VPA+ L +G + + E+P L+ +G+LEE R VL ++RGV++VD E + E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 263 ANQVTKPFSK--LMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLL 320
+ + K ++ R L++ ++LQ+FQQ TGINAI +Y+P +F+T+G L
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 321 SAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380
+I G+VN T ++++ VD+ GRR LLL M I ++G+ L K K
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS-----KG 345
Query: 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440
I+ +V + +F+ FA WGP+ W+I SE FPL R A A + N L FL+ F
Sbjct: 346 AGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFP 405
Query: 441 SMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTE 482
+ + +F FA +V+ LF F +PETKG ++ + E
Sbjct: 406 IITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
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Score = 324 bits (833), Expect = e-106
Identities = 166/483 (34%), Positives = 250/483 (51%), Gaps = 26/483 (5%)
Query: 10 GDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAH 69
P G V +IAA GGLMFGYD G+ GG A+ F +F
Sbjct: 13 LVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF-----------T 61
Query: 70 EDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA- 128
N Y + L S + I + A + + GR+ ++ I + F++G +L
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121
Query: 129 --AFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANM 186
A + MLI+GR+ LGIGVG A+ VP++LSE+AP +RGAL +QL IT GI +A
Sbjct: 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181
Query: 187 VNY-AMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRG 245
+S + GWR+ L + +PA L +G + E+P L+ +GR+EE R L R+RG
Sbjct: 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG 241
Query: 246 VANVDNEFDSIVHACEMANQVTKPFS-------KLMKRSSRPPLVIAILLQVFQQFTGIN 298
+ D E + ++ + K R R L + ++LQ FQQFTGIN
Sbjct: 242 TSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGIN 301
Query: 299 AIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFI 358
AIM+Y+P +F+ G ++ + L ++I G VN T V+++ VD+ GRR LLL M I
Sbjct: 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361
Query: 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRT 418
++GI+ A ++ +K + +V + +F+ FA WGP+ W+I SE FPL R
Sbjct: 362 CLFVLGILGASFVTG---SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418
Query: 419 AGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG-IFFFFAAWIVVMGLFAMFLLPETKGVPV 477
G + AV+ N L F+V F +ML ++ G +F FF V+ +F F LPETKG +
Sbjct: 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478
Query: 478 DAV 480
+ +
Sbjct: 479 EEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 4e-60
Identities = 134/495 (27%), Positives = 232/495 (46%), Gaps = 60/495 (12%)
Query: 22 YVVACVIIAAFGGLMFGYDIG-ISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQF 80
Y+ + ++A GGL+FGYD ISG V +++ + ++ E N
Sbjct: 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTV--------FVAPQNLSES----AANSL 56
Query: 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA------------ 128
L + + +I + ++ GRR +++IA+ F + + ++
Sbjct: 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDN 116
Query: 129 AFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISF-QLFITIGIFIANMV 187
++ ++ R+ GIGVG A+ P++++E+APA IRG L +SF Q I G + V
Sbjct: 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKL-VSFNQFAIIFGQLVVYFV 175
Query: 188 NYAMSN------VHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQ 241
NY ++ ++ GWR A +PAL + + ETP L+ RG+ E+ +L+
Sbjct: 176 NYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR 235
Query: 242 RIRGVANVDNEFDSIVHACEMANQVTKP---FSKLMKRSSRPPLVIAILLQVFQQFTGIN 298
+I G I H+ + + F + +VI ++L VFQQF GIN
Sbjct: 236 KIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSVFQQFVGIN 288
Query: 299 AIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFI 358
+++YAP +F+T+G ++ +LL +I G++N+ T++++ VDK GR+ L I
Sbjct: 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ--------I 340
Query: 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRT 418
++ I L I+ ++ + +V FA SWGP+ W++ SE FP R
Sbjct: 341 IGALGMAIGMFSLGTAFYTQ-APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399
Query: 419 AGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFF--FFAAWI-----VVMGLFAMFLLPE 471
A AV+ + + V+ F M N F F+ WI V+ LF +PE
Sbjct: 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459
Query: 472 TKGVPVDAVTERVWK 486
TKG ++ + E +W+
Sbjct: 460 TKGKTLEEM-EALWE 473
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 97/418 (23%), Positives = 167/418 (39%), Gaps = 59/418 (14%)
Query: 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLI 136
D + L SC ++ L+ SFV + + GR+ + +++ V VLT+ + + ++ +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 137 LGRLALGIGV-GFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH 195
+ RL +G+G+ G QAV L E P K R + Q+F ++G+ + +V Y +
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240
Query: 196 PYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIR---GVANVDNE 252
WR +P + S + E+P LI +GR+EE +LQRI G
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 253 FDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVG 312
+ E +K + P L L + FT A +Y VL
Sbjct: 299 LSLSL---EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT--TAFSYYGLVLDLGNL 353
Query: 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR----ALLLEAVVQMFITQSIIGIILA 368
G+ L I+GLV + + L+++ +D+ GRR A LL A V + + + +
Sbjct: 354 GGNI--YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-- 409
Query: 369 IWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTN 428
+ L + G ++ + +L +E +P R V +
Sbjct: 410 -------------YFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRN--LGVGVCST 453
Query: 429 M-----LFTFLVAQA-----FLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVP 476
M + + + FL F ++ G+ +F LPETKGVP
Sbjct: 454 MARVGSIISPFLVYLGEKWLFLP---------LVLFGGLALLAGILTLF-LPETKGVP 501
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 70/350 (20%), Positives = 132/350 (37%), Gaps = 43/350 (12%)
Query: 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRL 140
+ L + L +A +A R+ + GRR + I F +G++L A + +L++ R+
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 141 ALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWR 200
G+G G A +++ P + RG +G + ++ ++++ +GWR
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL--FGWR 151
Query: 201 LSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHAC 260
+ I + AL V + + P +R + E
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEE------------------------ 187
Query: 261 EMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLL 320
A P KL+ R L++A+LL A++ Y P+ + +G + + L
Sbjct: 188 --APAPLVPAWKLLLRDPVLWLLLALLL----FGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 321 SAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380
+ GL+ L+ D+ GRR LL + + I+ + L T S
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLL-----LALLLLILAALGLALLSLTESSL-- 294
Query: 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNML 430
++V +L+ F G + P + S+ P E R + L
Sbjct: 295 -WLLVALLLLGFGAGLVF---PALNALVSDLAPKEERGTASGLYNTAGSL 340
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Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRL 140
L S L + S +A + + GRR + + F +G +L + A + +L++GR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 141 ALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWR 200
LG+G G A ++E P K RG F +G + ++ ++ GWR
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES--LGWR 153
Query: 201 LSLAIAGVPALFLCVGSM 218
I + L L + +
Sbjct: 154 WLFLILAILGLLLALLLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 14/192 (7%)
Query: 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVY 338
L++ + L F G ++ Y P+ Q V G + + L + GL + L+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 339 AVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAW 398
D+ GRR LLL I ++ A+ L + ++V +L+ F +GFA+
Sbjct: 234 LSDRLGRRRLLL----------LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 399 SWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWI 458
SE P E R + L L +L G F A +
Sbjct: 284 PALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 459 VVMGLFAMFLLP 470
++ + LLP
Sbjct: 341 ALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 51/290 (17%), Positives = 110/290 (37%), Gaps = 15/290 (5%)
Query: 90 LAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFA 149
+ + + + GRR + + F V +L + A +++ L++ R G+G+G
Sbjct: 63 IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGL 122
Query: 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGV- 208
+ +SE AP + RG IG + + + + +GWR + G+
Sbjct: 123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL--IPVFGWRSLFYVGGIA 180
Query: 209 PALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTK 268
P L L + + E+ L+ + R E R ++ I + E S + + +
Sbjct: 181 PLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAI--APQMQAEAQSALPEQKATQGTKR 237
Query: 269 PFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLV 328
K + + + + + L F G+ + + P L +GF + +
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFG 297
Query: 329 NVFSTLVSVYAVDKAGRR---------ALLLEAVVQMFITQSIIGIILAI 369
V +++ + D+ G R A+ V + +++ ++ AI
Sbjct: 298 GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 59/352 (16%)
Query: 89 YLAALIASFVASRVCSKQGRRPT-------MQIASFFFLVGVVLTSAAFHIS---MLILG 138
+LA + + V + GR+ T M I + L+G++ + A I +L+L
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTL--LIGLLPSYATIGIWAPILLLLA 102
Query: 139 RLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV---- 194
RL G +G L+L+E AP RG Q+ +G+ +A + +S +
Sbjct: 103 RLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162
Query: 195 --HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNE 252
+GWR+ ++ V L ++ ETP + + +
Sbjct: 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK------------------ 204
Query: 253 FDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVG 312
+ P ++ + R P ++ + L + T + L QT+G
Sbjct: 205 ------------KKRGPIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLG 251
Query: 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLK 372
+ ++LL +++ ++ + +S D+ GRR +L I +++ +LA
Sbjct: 252 LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL--------IIFTVLAALLA-VPL 302
Query: 373 PTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFA 424
L+ + LV + GP+G +P E FP E R G + A
Sbjct: 303 LMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 86 SCLYLAALIASFVASRVCSKQGRRPT----MQIASFF-FLVGVVLTSAAFHISMLILGRL 140
+YL ++ +F + K GR+ + + FF F V F + RL
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF-----LFCRL 263
Query: 141 ALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG-IFIANMV---------NYA 190
G G+G A V + +E + RG +F IG I+ A M ++
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 191 MSNVHPY-GWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRI 243
M + + + WR+ + + P +F + E+P +E G+ +E ++L+ I
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 76 YDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFL-VGVVLTSAAFHISM 134
L S L ++ + + + + GRR + + +G++L + A +++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV 194
L++ L LG G+GFA A+ SELAP + RG + F F ++G + ++ + +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL--L 325
Query: 195 HPYGWRLSLAIAGVPALFLCV 215
G+ I AL +
Sbjct: 326 DTGGYGGVFLILAALALLAAL 346
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 64/399 (16%), Positives = 122/399 (30%), Gaps = 59/399 (14%)
Query: 85 TSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGI 144
S ++ F + + G R T+ + + V L + A L + R+ LG
Sbjct: 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA 94
Query: 145 GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLA 204
+ L ++ PA R F +G I + + + W+ +
Sbjct: 95 AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG--WILIHFSWQWAFI 152
Query: 205 IAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMAN 264
I GV + V + + + + + E IV +A
Sbjct: 153 IEGVLGIIWGVLWL------------------KFIPDPPQKAKWLTEEEKYIVVGGLLAE 194
Query: 265 QVTKPFSKLMKRSSRPPLVIAILLQ-----VFQQFTGINAIMF----YAPV-LFQTVGFG 314
Q K + + + +L + +N + + P L Q G
Sbjct: 195 QQGK-----GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS 249
Query: 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLL----EAVVQMFITQSIIGIILAIW 370
+ A + G+V ++ D RR L + + + S++
Sbjct: 250 ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA---- 305
Query: 371 LKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNML 430
T +N A + +V + F +G G +GW + S+ P A T L
Sbjct: 306 ---TNYVNIPYAALALVALGFFGLGA----GAIGWALISDNAPGNI-------AGLTGGL 351
Query: 431 FTFLVAQAFLSM--LCNMKAGIFFFFAAWIVVMGLFAMF 467
L + + A FA ++V+ A+
Sbjct: 352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 90 LAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFA 149
L LI S ++ + + GR+P + + F F++ + + + +I++LI+ R G G FA
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVP 209
A ++++ P + RG I +G + + ++ GWR +
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF--LGWRAPFLFLAIL 126
Query: 210 ALF 212
AL
Sbjct: 127 ALA 129
|
Length = 141 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 28/119 (23%), Positives = 47/119 (39%)
Query: 105 KQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAK 164
+ GRR M + F G + A + + RL +GIG+G + ++ E P
Sbjct: 73 RYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132
Query: 165 IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223
+R + +G +A V + V GWR I+ +P +F +I E
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12) | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.004
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 83 LFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLAL 142
LF++ + ++ + R+ + GRRP + LVG ++ A + L+ L
Sbjct: 82 LFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLL 141
Query: 143 GIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPY-GWRL 201
G+ G A A PLF+ EL K + +G+ I + AM+ PY G RL
Sbjct: 142 GVAAGPAG-ASPLFIGELMSNKTK-----------FLGLLIVSAPTIAMNGAGPYFGQRL 189
Query: 202 SL 203
++
Sbjct: 190 AI 191
|
This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.86 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.76 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.76 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.73 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.72 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.72 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.66 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.51 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.49 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.48 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.46 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.44 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.43 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.43 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.43 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.42 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.4 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.39 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.39 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.39 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.38 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.37 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.32 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.3 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.3 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.3 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.29 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.29 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.28 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.27 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.27 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.26 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.25 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.24 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.23 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.23 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.23 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.22 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.22 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.2 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.19 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.18 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.18 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.18 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.16 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.16 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.15 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.15 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.13 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.12 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.11 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.11 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.06 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.06 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.05 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.04 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.02 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.02 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.02 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.97 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.96 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.96 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.96 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.94 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.94 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.94 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.93 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.86 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.77 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.75 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.65 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.63 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.62 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.62 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.61 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.5 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.5 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.47 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.42 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.41 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.41 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.38 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.34 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.3 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.22 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.21 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.15 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.15 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.12 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.05 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.02 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.94 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.86 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.8 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.69 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.45 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.44 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.42 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.41 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.39 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.35 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.29 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.13 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.01 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.96 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.9 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.65 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.53 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.29 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.21 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.93 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.67 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.34 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.02 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.57 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.21 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.15 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.23 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.0 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.02 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.8 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.06 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 88.03 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 87.02 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.62 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 85.49 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 82.95 | |
| KOG4255 | 439 | consensus Uncharacterized conserved protein [Funct | 82.82 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 81.43 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=359.00 Aligned_cols=459 Identities=28% Similarity=0.497 Sum_probs=389.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHH
Q 035636 17 GRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIAS 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~ 96 (515)
++.+++......+++++.+-.||..+.+++.. ...++|.++.+.++.+.+..++ .-....+.+.+++.+|.++|+
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~---~~i~~f~n~t~~~r~g~~~s~~--~~~~lwS~~vs~f~iG~~~Gs 77 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAPQ---ELIKSFINETLIERYGLPLSDS--TLDLLWSLIVSIFFIGGMIGS 77 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCchH---HHHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888899999999987653 7888888888877665322211 122335778899999999999
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHH
Q 035636 97 FVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA---FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISF 173 (515)
Q Consensus 97 ~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (515)
++.|+++||+|||..+.++.++..++.++..++ +++..++++|++.|+..|......+.++.|..|++.||....+.
T Consensus 78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~ 157 (485)
T KOG0569|consen 78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL 157 (485)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence 999999999999999999999888887777765 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHh-hCChHHHHHHHHHHhCCCcchHH
Q 035636 174 QLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIE-RGRLEEGRVVLQRIRGVANVDNE 252 (515)
Q Consensus 174 ~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
+.+..+|.+++..++.--.--++..|++.+.+..+++++.++...++||||||+.. +++.++|++.++.+++.++.+++
T Consensus 158 ~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 158 QIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 99999999999877654322233579999999999999999999999999999998 89999999999999999987777
Q ss_pred HHHHHHHHHhh---cccCcchhhhccc-CCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHH
Q 035636 253 FDSIVHACEMA---NQVTKPFSKLMKR-SSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLV 328 (515)
Q Consensus 253 ~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 328 (515)
.++..++.+.+ ++++.+++++++. ..+++....+.+....++.+.+.+.+|...++++.|++..++.+.....++.
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v 317 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIV 317 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66655444333 2356678888865 4566677778888889999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhc
Q 035636 329 NVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIP 408 (515)
Q Consensus 329 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (515)
.++.++++.++.||+|||++++.+..++.+..+++.....+.... .++..+..+...+++...++.+.+|+.+.+.
T Consensus 318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~ 393 (485)
T KOG0569|consen 318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIG 393 (485)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHH
Confidence 999999999999999999999999999988888877665432110 0123344567778888889999999999999
Q ss_pred ccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccccCCCCChHhhHHHH
Q 035636 409 SETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERV 484 (515)
Q Consensus 409 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (515)
+|++|++.|+.+.++...++++..++....+..+.+..|...++.+.+.+.+..+..++.+||||+|+..|+.++.
T Consensus 394 aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 394 AELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999889999999999999999999999999999883433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=345.18 Aligned_cols=442 Identities=28% Similarity=0.543 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhh
Q 035636 21 VYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVAS 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g 100 (515)
+.+...+.+++++.+.++||..++++.. |.+.++|.+. ...+++++..+.+++.+++.++..++++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G 76 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP---------QNLSESAANSLLGFCVASALIGCIIGGALGG 76 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhccc---------ccccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777788999999999987654 5677777432 2445689999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcch
Q 035636 101 RVCSKQGRRPTMQIASFFFLVGVVLTSAA------------FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGA 168 (515)
Q Consensus 101 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 168 (515)
+++||+|||++++++.++++++.+.++++ ++++.++++|+++|++.|...+...++++|++|+++|++
T Consensus 77 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~ 156 (479)
T PRK10077 77 YCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGK 156 (479)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhH
Confidence 99999999999999999999998888763 235678899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc------CCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHH
Q 035636 169 LNISFQLFITIGIFIANMVNYAMSNV------HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQR 242 (515)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~l~~~l~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 242 (515)
++++.+.+..+|.++++.+++.+... ...+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++
T Consensus 157 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 236 (479)
T PRK10077 157 LVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998887765421 236899999999888887777677799999998888888887777766
Q ss_pred HhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHH
Q 035636 243 IRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSA 322 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (515)
..+..+.+...++..+..+.++.. .+..+. ..............+....+++...++.|.+.++.|.+........
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~ 312 (479)
T PRK10077 237 IMGNTLATQALQEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQT 312 (479)
T ss_pred HcCChhHHHHHHHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHH
Confidence 655443332222222221111110 011111 0011111122223333444455667788998888899888778888
Q ss_pred HHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccccc
Q 035636 323 VITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGP 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (515)
...++..+++.++++++.||++||+.+..+..+.+++.+++..... .+..........+++..++...+.|
T Consensus 313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAFAMSWGP 383 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHHHhccccc
Confidence 8888999999999999999999999999998888887777654321 1112223333444455555555567
Q ss_pred chhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------hhcc-chhhHHHHHHHHHHHHHHHhccccCCCC
Q 035636 403 LGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSML------CNMK-AGIFFFFAAWIVVMGLFAMFLLPETKGV 475 (515)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (515)
..+.+++|.+|++.|+++.|+.+...+++.++++.+++.+. +..+ ...+++++++.++..++.+++.||++++
T Consensus 384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 77888899999999999999999999999999988876554 3444 3345555666666666666778899988
Q ss_pred ChHhhHHHHHcc
Q 035636 476 PVDAVTERVWKQ 487 (515)
Q Consensus 476 ~~~~~~~~~~~~ 487 (515)
+.+|. ++..++
T Consensus 464 ~~~~~-~~~~~~ 474 (479)
T PRK10077 464 TLEEM-EALWEP 474 (479)
T ss_pred CHHHH-HHHHhh
Confidence 88777 555543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=347.37 Aligned_cols=438 Identities=17% Similarity=0.225 Sum_probs=312.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHH
Q 035636 17 GRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIAS 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~ 96 (515)
.+..++++.++++++++.+.++||...++.+. |.+.+++. .++.+.+..+.+++.+.+.++..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ig~~ig~ 73 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY------------HGKGPLPSSVSAAVNGSASIGTLAGQ 73 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888999999999999887654 33333221 01235567788999999999999999
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhh
Q 035636 97 FVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFH------ISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALN 170 (515)
Q Consensus 97 ~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 170 (515)
+++|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++
T Consensus 74 ~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~ 153 (502)
T TIGR00887 74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM 153 (502)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHH
Confidence 99999999999999999999999999999998866 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc---------------------cCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHh
Q 035636 171 ISFQLFITIGIFIANMVNYAMSN---------------------VHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIE 229 (515)
Q Consensus 171 ~~~~~~~~~G~~i~~~l~~~l~~---------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 229 (515)
++.+....+|.++++.++..+.. ..+++||++|.+.++++++..+..+++||||+|+..
T Consensus 154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~ 233 (502)
T TIGR00887 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD 233 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999988876532 012479999999999888888888889999999988
Q ss_pred hCChH-HHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCch---hHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 230 RGRLE-EGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRP---PLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
+++.+ ++.+.+.+..+.+..++ .++..+..++++..+.+++++++...++ +..+......+.....++....|.|
T Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p 312 (502)
T TIGR00887 234 VAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQK 312 (502)
T ss_pred hCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccH
Confidence 87764 46666666544321111 1111110011111123566666532212 2233333333333444556677789
Q ss_pred HHHHHcCCCChhHHH------------HHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 035636 306 VLFQTVGFGSEASLL------------SAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373 (515)
Q Consensus 306 ~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (515)
.++++.|++....+. ...+..++.+++.++.+++.||+|||+.+..+..+.+++..++.....
T Consensus 313 ~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~----- 387 (502)
T TIGR00887 313 VILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN----- 387 (502)
T ss_pred HHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 998888886543211 233445567778899999999999999988887777766655554321
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 035636 374 TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM------- 446 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------- 446 (515)
...........++....+..+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+++.+.+..
T Consensus 388 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (502)
T TIGR00887 388 -----HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462 (502)
T ss_pred -----hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence 00011111122222222344455677788899999999999999999999999999999999998743
Q ss_pred ---c-chhhHHHHHHHHHHHHHHHhccccCCCCChHhh
Q 035636 447 ---K-AGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAV 480 (515)
Q Consensus 447 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (515)
+ ...+++++++.++..+ .++++||+++++++|+
T Consensus 463 ~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei 499 (502)
T TIGR00887 463 TGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEEL 499 (502)
T ss_pred ccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhh
Confidence 2 2345555555555444 4567799999887765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=346.48 Aligned_cols=422 Identities=18% Similarity=0.224 Sum_probs=319.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhh
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVA 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~ 99 (515)
.+++|.++++++++.+.+++|...++.+ +|.+.+++ +++..+.+++.++++++.+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~-----------------gls~~~~g~l~s~~~lG~iiG~li~ 222 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL-----------------CIPDSGKGMLGLIVYLGMMVGAFFW 222 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888899999998877654 35665555 8899999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHH
Q 035636 100 SRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITI 179 (515)
Q Consensus 100 g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (515)
|+++||+|||+++++++++.++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.++++..++.+
T Consensus 223 G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~i 302 (742)
T TIGR01299 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMI 302 (742)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-----------CCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCc
Q 035636 180 GIFIANMVNYAMSNVH-----------PYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVAN 248 (515)
Q Consensus 180 G~~i~~~l~~~l~~~~-----------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 248 (515)
|.++++.++..+.... ..+||+.+++.++++++.++..+++||||+|+..+++.+++.+.+++++..+.
T Consensus 303 G~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~ 382 (742)
T TIGR01299 303 GGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNM 382 (742)
T ss_pred HHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCC
Confidence 9999998876654321 14799999999998888887778899999999999999999999999987653
Q ss_pred ch---HHH----HHHHHHHHh------hcccC------------------cchhhhcccCCchhHHHHHHHHHHHHhhhH
Q 035636 249 VD---NEF----DSIVHACEM------ANQVT------------------KPFSKLMKRSSRPPLVIAILLQVFQQFTGI 297 (515)
Q Consensus 249 ~~---~~~----~~~~~~~~~------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (515)
.. ... +..+..... +++.+ .+++++++...+ +..+.+++.++....++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~-~~tl~l~~~wf~~~~~y 461 (742)
T TIGR01299 383 RAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVR-EITIKLMGVWFTLSFGY 461 (742)
T ss_pred CCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHH
Confidence 21 110 011110000 00000 124445555444 44555666667777789
Q ss_pred HHHHHhHHHHHHHc------------------------------------------CC-----C----------------
Q 035636 298 NAIMFYAPVLFQTV------------------------------------------GF-----G---------------- 314 (515)
Q Consensus 298 ~~~~~~~~~~~~~~------------------------------------------g~-----~---------------- 314 (515)
+++..|+|.++++. |+ +
T Consensus 462 ygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (742)
T TIGR01299 462 YGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTS 541 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccc
Confidence 99999999875431 00 0
Q ss_pred ----------------------------------------------------ChhHHHHHHHHHHHHHHHHhhHHHhhhc
Q 035636 315 ----------------------------------------------------SEASLLSAVITGLVNVFSTLVSVYAVDK 342 (515)
Q Consensus 315 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 342 (515)
.........+..++.+++.+++++++||
T Consensus 542 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr 621 (742)
T TIGR01299 542 SNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDK 621 (742)
T ss_pred cchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012344556678999999999999999
Q ss_pred cCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHH
Q 035636 343 AGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFA 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 422 (515)
+|||+++..+.++.+++.+++.+.. . ....+++.++++++... ..+..+.+++|++|++.|++++|
T Consensus 622 ~GRr~~l~~~~~lsai~~ll~~~~~------------s-~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~G 687 (742)
T TIGR01299 622 IGRLRMLAGSMVLSCISCFFLSFGN------------S-ESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFG 687 (742)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHc------------c-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999988888888777665431 1 12223333333333333 23456788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccccCCCCC
Q 035636 423 FAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVP 476 (515)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (515)
+.+....+|++++|++.+.+.+......+++.+++.++ +.++.+++||++++.
T Consensus 688 i~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll-~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 688 FLNALCKAAAVLGILIFGSFVGITKAAPILFASAALAC-GGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhCCCCcccc
Confidence 99999999999999999988776434444444444444 444445668888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=331.55 Aligned_cols=456 Identities=37% Similarity=0.663 Sum_probs=371.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCc--chHHHHHHHHHHHHHH
Q 035636 17 GRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDN--QFLQLFTSCLYLAALI 94 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~~ 94 (515)
...+...........++.+..|++ +..+....+....+++.... +...+. .+.+|+.+++.++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~s~~~lga~~ 104 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLY-----------DLSTGEYSVRQGLLTSILNLGALV 104 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccc-----------ccccchhHHHHHHHHHHHHHHHHH
Confidence 344556667777888899999998 43333333334444432111 111122 5679999999999999
Q ss_pred HHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHH
Q 035636 95 ASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQ 174 (515)
Q Consensus 95 ~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (515)
+++++|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+
T Consensus 105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~ 184 (513)
T KOG0254|consen 105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ 184 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhC--CCcchHH
Q 035636 175 LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRG--VANVDNE 252 (515)
Q Consensus 175 ~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 252 (515)
....+|..++..++....+.. .+||..+.+..+++++..+..+++||+|+|+.++++.+++++.++++++ ..+.+.+
T Consensus 185 l~~~~Gi~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~ 263 (513)
T KOG0254|consen 185 LFITIGILLGYCINYGTSKVY-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE 263 (513)
T ss_pred HHHHHHHHHHHHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence 999999999977777765431 4899999999999999888888899999999999999999999999999 4455555
Q ss_pred HHHHHHHHHhh--ccc-CcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHH
Q 035636 253 FDSIVHACEMA--NQV-TKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVN 329 (515)
Q Consensus 253 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 329 (515)
.+..+.....+ ..+ +..+.+++++..+++..+...+..+.+..+++...+|.+.+++..|.+... .....+.++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~ 342 (513)
T KOG0254|consen 264 LELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVN 342 (513)
T ss_pred HHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHH
Confidence 55555222111 112 224667777667788888999999999999999999999999999887655 66677788889
Q ss_pred HHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcc
Q 035636 330 VFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPS 409 (515)
Q Consensus 330 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
+++.+++..+.||+|||+.++.+...+.++.++++........... ......+..+...+++...+..++.|+++.+.+
T Consensus 343 ~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s 421 (513)
T KOG0254|consen 343 FLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS 421 (513)
T ss_pred HHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence 9999999999999999999999999999999988877654322110 123445677778888888889999999999999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHH-HHHhccccCCCCChHhhHHHHHcc
Q 035636 410 ETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGL-FAMFLLPETKGVPVDAVTERVWKQ 487 (515)
Q Consensus 410 ~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 487 (515)
|.+|.+.|+++.++....+++...+....+....+..+ ...+..+.+++.+... ..++++||+++++.+|+ ++..+.
T Consensus 422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei-~~~~~~ 500 (513)
T KOG0254|consen 422 EIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEI-NELFEE 500 (513)
T ss_pred ccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHH-HHHHHc
Confidence 99999999999999999999999998888888877776 6677777777777777 78889999999999998 665544
Q ss_pred c
Q 035636 488 H 488 (515)
Q Consensus 488 ~ 488 (515)
+
T Consensus 501 ~ 501 (513)
T KOG0254|consen 501 G 501 (513)
T ss_pred C
Confidence 4
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=319.87 Aligned_cols=445 Identities=37% Similarity=0.642 Sum_probs=321.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHH
Q 035636 17 GRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIAS 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~ 96 (515)
++..|+.+....++.++.++.+++...++.... ....++.-+ .+.+-+.+..+.+++.+++.++..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (481)
T TIGR00879 20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALA--LPAFEFKFT---------SANSDSYSSSLWGLVVSIFLVGGFIGA 88 (481)
T ss_pred CcccHHHHHHHHHHHHHHHhcccccchhhhhhh--cHHHHHhcC---------CcccCCCChhHHHHHHHHHHHHHHHHH
Confidence 344566666666777788889999888776553 333333111 111124678999999999999999999
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHH
Q 035636 97 FVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF---HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISF 173 (515)
Q Consensus 97 ~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (515)
+++|+++||+|||++++++.+++.++.+++.+.. +++.++++|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 89 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 168 (481)
T TIGR00879 89 LFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY 168 (481)
T ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHH
Confidence 9999999999999999999999999999986543 4568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcch
Q 035636 174 QLFITIGIFIANMVN---YAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVD 250 (515)
Q Consensus 174 ~~~~~~G~~i~~~l~---~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
+.+..+|.++++.++ .... ...+||+.|++.++..++..+..+++||+|++...+++.+++.+..++..+.++.+
T Consensus 169 ~~~~~~G~~~~~~~~~~~~~~~--~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 169 QLAITFGILVAYGFGSGKVSLN--NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc
Confidence 999999999999998 5542 23689999999777777777777779999988777777666665555544433222
Q ss_pred HHHHHHH----HHHH-hhcccCcchhhhcccC--CchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHH
Q 035636 251 NEFDSIV----HACE-MANQVTKPFSKLMKRS--SRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAV 323 (515)
Q Consensus 251 ~~~~~~~----~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 323 (515)
.+..... ...+ +.+..+..+.+.++.. ..++.++...+..+...........+.|.+.++.|++..+.+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 326 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHH
Confidence 2211110 0000 1111112233333321 2345555556666655555667778889999989999988889999
Q ss_pred HHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccc
Q 035636 324 ITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPL 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
+..++.+++.++.+++.||++||+.+..+....+++.+++........ +.. +....+..+....++..+++.+..+.
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV-TGS--SKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc-CCc--ccchhHHHHHHHHHHHHHHHccccCe
Confidence 999999999999999999999999988887777666666553221100 000 00012333344444555555555667
Q ss_pred hhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHhccccCCCCCh
Q 035636 404 GWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG-IFFFFAAWIVVMGLFAMFLLPETKGVPV 477 (515)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (515)
...++.|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++. .+++.++++++..++.+++.+|+++++.
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 7777789999999999999999999999999999999999887754 3455555556666666666777766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=319.64 Aligned_cols=400 Identities=18% Similarity=0.259 Sum_probs=274.3
Q ss_pred HHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCc--chHHH--HHHHHHHHHHHHHHhhhh
Q 035636 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDN--QFLQL--FTSCLYLAALIASFVASR 101 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~l~~~~~~~~~g~ 101 (515)
....+.++.++++||..+++... |.+.++|+|+. ++ ...+. +.++.++++.+++++.|+
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~ig~~~~G~ 79 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA---------------DPSVQMIAALATFSVPFLIRPLGGLFFGM 79 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999987554 66777775431 11 11222 257888999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHH
Q 035636 102 VCSKQGRRPTMQIASFFFLVGVVLTSAAFHISM--------LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISF 173 (515)
Q Consensus 102 l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (515)
++||+|||+++.+++++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++.
T Consensus 80 l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~ 159 (490)
T PRK10642 80 LGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL 159 (490)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 999999999999999999999999999999874 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc------cCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCC
Q 035636 174 QLFITIGIFIANMVNYAMSN------VHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVA 247 (515)
Q Consensus 174 ~~~~~~G~~i~~~l~~~l~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 247 (515)
..+..+|.++++.+...+.. ...+|||++|++.++++++..++...+||+|++...+++.++..+
T Consensus 160 ~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------- 230 (490)
T PRK10642 160 DFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------
Confidence 99988898888876654432 123799999999887777666666679999987533221111000
Q ss_pred cchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHH
Q 035636 248 NVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITG 326 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 326 (515)
+ ...+.++.++++++++ .+++ +.......+.....++.+..|.|.++++ .|++..+.........
T Consensus 231 ----------~--~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 296 (490)
T PRK10642 231 ----------E--GLQDGPKVSFKEIATK-HWRS-LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIM 296 (490)
T ss_pred ----------c--cccccccCCHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 0001122345555543 2222 2222233333445567778899998865 5888888787778888
Q ss_pred HHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhh
Q 035636 327 LVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWL 406 (515)
Q Consensus 327 ~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (515)
++.+++.++.|++.||+|||+.+..+.....+....+.... .............+.+.+.+.... ....
T Consensus 297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~g-~~~~ 365 (490)
T PRK10642 297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCFTG-VMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 89999999999999999999988776654333322211111 111112222222223322222222 2345
Q ss_pred hcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch-hhHHHHHHHHHHHHHHHhccccCCCCCh
Q 035636 407 IPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AG-IFFFFAAWIVVMGLFAMFLLPETKGVPV 477 (515)
Q Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (515)
+..|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ +. ..+...+ ..+..++..++.||++++..
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~-~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMV-VAVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHhccccCCCC
Confidence 55789999999999998777788888999999999887654 22 2333333 33333444455688766543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=291.64 Aligned_cols=401 Identities=13% Similarity=0.101 Sum_probs=303.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHH
Q 035636 16 EGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIA 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~ 95 (515)
++..+++++.+...+.+++...++..-.++ .++|.++++. ++|.+|+|++.+++++.+.++
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~-----------------~lsk~~lG~i~s~f~i~YG~s 80 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDG-----------------GLSKTQLGILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHH
Confidence 444566677778888888888888877665 4567777766 799999999999999999999
Q ss_pred HHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHH
Q 035636 96 SFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQL 175 (515)
Q Consensus 96 ~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (515)
-++.|.++||.+.|+.+..++++.++.+++++++++.+.+.+..++.|..+|..+|.+...+..|+|++|||+..+++++
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHH
Q 035636 176 FITIGIFIANMVN--YAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNE 252 (515)
Q Consensus 176 ~~~~G~~i~~~l~--~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
+-++|..+.|++. +++... .+||..|++.++++++..+..++ .+|+|+..-.. . .++.
T Consensus 161 shNiGGal~~~~~~la~~~~~--~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~----------------ie~~ 221 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFH--GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-P----------------IEEY 221 (448)
T ss_pred hhhcccchHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-C----------------HHHh
Confidence 9999999999998 777543 58999999999998887766654 88888632111 1 1111
Q ss_pred HHHHHHH-HHhhcccCcchhhh-cccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHH
Q 035636 253 FDSIVHA-CEMANQVTKPFSKL-MKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVN 329 (515)
Q Consensus 253 ~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 329 (515)
.++..+. .++++.+..+.+++ ++...++|.+|.+++..+.....-+.+..|.|.|+.+. |++...+....+.+=+++
T Consensus 222 ~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~ag 301 (448)
T COG2271 222 RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAG 301 (448)
T ss_pred hcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 1111111 11111111334444 46677889999999999999999999999999999765 999999999999999999
Q ss_pred HHHHhhHHHhhhcc--CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhh
Q 035636 330 VFSTLVSVYAVDKA--GRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLI 407 (515)
Q Consensus 330 ~~~~~~~~~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (515)
++|.+++||++||+ |||....+.+.+.....++..+. . +..+.+...+++.+.++.. .+...+.-..
T Consensus 302 l~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~-----~-----~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~ 370 (448)
T COG2271 302 LPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL-----A-----PNGSYLLDAILLFIIGFLI-YGPQMLIGLA 370 (448)
T ss_pred hHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc-----C-----CCccHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence 99999999999996 56655543333322222222221 1 1122233333333333222 2212233456
Q ss_pred cccCCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 035636 408 PSETFPLETRTAGFAFAVSTNML-FTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 408 ~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (515)
+.|+.|++..|++.|+...+.++ |...+....|++.|..||...+++..++.+++.+.
T Consensus 371 a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 371 AAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 67999999999999999999999 88889999999999988665555444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=282.54 Aligned_cols=372 Identities=16% Similarity=0.195 Sum_probs=290.0
Q ss_pred HHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhh
Q 035636 25 ACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCS 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d 104 (515)
..++.+.++.|..+.+..+..+.+ |++.+|+ |+|..+.|+..|.|.++..+++++...+.|
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLL--p~iA~dl-----------------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~ 73 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLL--PPIAADL-----------------GVSEGAAGQLITAYALGVALGAPLLALLTG 73 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhch--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555667787777776665444 6787777 999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHH
Q 035636 105 KQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIA 184 (515)
Q Consensus 105 r~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 184 (515)
|+.||++++..+.++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|
T Consensus 74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Q 035636 185 NMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMA 263 (515)
Q Consensus 185 ~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
.+++.++.+. +|||..|++.++++++..+..+. +| |+.. +
T Consensus 154 vPLGt~ig~~--~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~-----------------------------------~ 194 (394)
T COG2814 154 VPLGTFLGQL--FGWRATFLAIAVLALLALLLLWKLLP--PSEI-----------------------------------S 194 (394)
T ss_pred ccHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCC--CccC-----------------------------------C
Confidence 9999999876 89999999999999887776654 77 2100 0
Q ss_pred cccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhc
Q 035636 264 NQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDK 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 342 (515)
++.+.+.++.++- .+++.++...+..++.+.+.+....|...++++. |++....++....++++.++|++++|++.||
T Consensus 195 ~~~~~~~~~~~~~-l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 195 GSLPGPLRTLLRL-LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred CCCCcchhHHHHH-hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0111122222221 2235566666666666677777777776666654 9999999999999999999999999999999
Q ss_pred cCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHH
Q 035636 343 AGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFA 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 422 (515)
+.|+.+.....+..+..+.+.+.. .+.+..+....++++....... ......++.. ++.++.+.+
T Consensus 274 -~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~s 338 (394)
T COG2814 274 -GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGS 338 (394)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHH
Confidence 888888877777777766665532 2333444444443333332221 2223334433 478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccc
Q 035636 423 FAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
++....++|..+|..+.|.++++.|+......+++..+.++...+...
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877777776666666665554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=362.72 Aligned_cols=441 Identities=32% Similarity=0.656 Sum_probs=346.0
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr 108 (515)
++.++.+.+|||...++...........+.++.. +.+.+.+..+.+++.+..++|..+|+++.|+++||+||
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS--------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccc--------cccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 3456679999999998766544433333322211 11112256778999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHH
Q 035636 109 RPTMQIASFFFLVGVVLTSAAF---HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIAN 185 (515)
Q Consensus 109 r~~~~~~~~l~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 185 (515)
|+.++++.++..+++++.++++ |++.+.++|++.|++.|+..+....++.|..|+++|++..++.+.++.+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCC-CchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhc
Q 035636 186 MVNYAMSNVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMAN 264 (515)
Q Consensus 186 ~l~~~l~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
.++..+....+ .+||..+++.++++++..+...++||||+|+..++|.+++++.++++++.+..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 88776643322 46999999999999888888888999999999999999999999997777665555555555444443
Q ss_pred ccCcchhhhcccCC-chhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc
Q 035636 265 QVTKPFSKLMKRSS-RPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 343 (515)
+.+.+++++++.+. +++.+..+.+..+....+......|.+.+++..+.+.. ........+..+++.+++.++.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33456777776543 45556666666666667777778888888888877766 3344555677788888888999999
Q ss_pred CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHH
Q 035636 344 GRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF 423 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 423 (515)
|||+.++.+...++++.+.+..... ..... +.......+....+....+..++.+..+.++.|.+|++.|+++.|+
T Consensus 314 GRr~~~i~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~ 389 (451)
T PF00083_consen 314 GRRKLLIIGLLLMAICSLILGIIFF--LGVSS--SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGL 389 (451)
T ss_pred ccccccccccccccccccccccccc--ccccc--ccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence 9999999888888777766651010 00000 0011333444444555566667778888898999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHhccccCCCCChHhhHHHH
Q 035636 424 AVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGLFAMFLLPETKGVPVDAVTERV 484 (515)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (515)
....+++++++.+.+...+.+..+ ...+.++++++++..++.++++|||++++++|+ +++
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei-~~~ 450 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI-QEM 450 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH-Hhh
Confidence 999999999999999998888887 777888888888888888899999999999998 543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=311.02 Aligned_cols=384 Identities=20% Similarity=0.314 Sum_probs=280.7
Q ss_pred cCCcccCC---cchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 035636 70 EDNYCKYD---NQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGV 146 (515)
Q Consensus 70 ~~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 146 (515)
..+|++++ ..+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++.|++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 194 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence 46677998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhh
Q 035636 147 GFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTS 226 (515)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~ 226 (515)
+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+..+++||+|+|
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999999999999999999999999999999999999987773 39999999999988877777789999999
Q ss_pred HHhhCChHHHHHHHHHHhCCCcchH--HHHHHH-HHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHh
Q 035636 227 LIERGRLEEGRVVLQRIRGVANVDN--EFDSIV-HACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (515)
+..+++.+++.+.+++..+.+..+. +..... ++...+++++.+++++++.+..++..+...+..+.... ..+.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 345 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF----SYYG 345 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH----HHHH
Confidence 9999999998888877655442211 111111 11111111234566666654433333333332222222 2222
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 304 APVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.+......+.+. .......++..+++.++.+++.||+|||+.+..+..+.+++.+++.... ....+
T Consensus 346 ~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----------~~~~~ 411 (505)
T TIGR00898 346 LVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----------VDLYF 411 (505)
T ss_pred HhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----------CCchH
Confidence 233333344432 3444566788889999999999999999999988887777766555421 11112
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGL 463 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (515)
.......+..++.... .+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ +.+......+.++++..++.++
T Consensus 412 ~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 412 LRTALAVLGKFGITSA-FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 2223333333333322 2455678899999999999999999999999999999998 4443334555555555555444
Q ss_pred HHHhccccCCCCChHh
Q 035636 464 FAMFLLPETKGVPVDA 479 (515)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (515)
+ .+++||++++++++
T Consensus 490 ~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 490 L-TLFLPETKGVPLPE 504 (505)
T ss_pred H-HHcCcCCCCCCCCC
Confidence 4 45678888876543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=294.87 Aligned_cols=386 Identities=18% Similarity=0.216 Sum_probs=260.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcch---HHHHHHHHHHHHHHHH
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQF---LQLFTSCLYLAALIAS 96 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~g~~~s~~~l~~~~~~ 96 (515)
+.+++..+..++++.++++||...++... |.+.++|+|+ +.+..+ .+...+..+++..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ig~ 80 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS--------------GNTTTQLLQTAGVFAAGFLMRPIGG 80 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC--------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455456666788999999999876443 6777777542 223333 3344455566666999
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcch
Q 035636 97 FVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHIS--------MLILGRLALGIGVGFANQAVPLFLSELAPAKIRGA 168 (515)
Q Consensus 97 ~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 168 (515)
+++|+++||+|||+++..++++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|++
T Consensus 81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 9999999999999999999999999999999998874 58899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc------CCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHH
Q 035636 169 LNISFQLFITIGIFIANMVNYAMSNV------HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQR 242 (515)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~l~~~l~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 242 (515)
+.++.+.+...|.++++.+...+... ..+|||++|++.++++++.......+||+|++..++
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------------ 228 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------------ 228 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------------
Confidence 99999999989988888776555321 137999999998888877666555678876431000
Q ss_pred HhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHH-HHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHH
Q 035636 243 IRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILL-QVFQQFTGINAIMFYAPVLFQT-VGFGSEASLL 320 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 320 (515)
.+++.+++++++. +..+...+ ..+.....++.+..|.|.++++ .|++..+.+.
T Consensus 229 ---------------------~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~ 283 (432)
T PRK10406 229 ---------------------LKEAGSLKGLWRN----RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG 283 (432)
T ss_pred ---------------------hcccccHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0011234555442 22333322 2233344566777889988865 5999888888
Q ss_pred HHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccc
Q 035636 321 SAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSW 400 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
...+..+...++.++.|++.||++||+.+.....+.++....+..... ........+....+....... .
T Consensus 284 ~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~ 353 (432)
T PRK10406 284 IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---------NVSSPYAAFGLVMCALLIVSF-Y 353 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHH-H
Confidence 888888888889999999999999998876655443333221111110 111112111111111111111 1
Q ss_pred ccchhhhcccCCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHhcc
Q 035636 401 GPLGWLIPSETFPLETRTAGFAFAVSTNML-FTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGLFAMFLL 469 (515)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 469 (515)
.+....+.+|.+|++.|+++.|+.+..+++ ++...|.+.+. .+..+ +...+.+.++..+++++..+++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 223456678999999999999999988765 34456776664 45555 4444444444444444444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=295.19 Aligned_cols=388 Identities=15% Similarity=0.130 Sum_probs=272.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhh
Q 035636 23 VVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRV 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l 102 (515)
+|....+++++.+++++|....+... |.+.+++ |++..+.|++.+++.+++.+++++.|++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l 66 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL-----------------GLSATMFGLAATLFYAAYVICGIPSNIM 66 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34456667778888899988877544 4454444 9999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHH
Q 035636 103 CSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182 (515)
Q Consensus 103 ~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 182 (515)
+||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.+
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc----CCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHH
Q 035636 183 IANMVNYAMSNV----HPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIV 257 (515)
Q Consensus 183 i~~~l~~~l~~~----~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
+++.+++.+... +..|||+.|++.++++++..++. +++||+|+... .-..++.+...+..+.... + .++..
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~-~--~~~~~ 222 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQL-T--LEQPE 222 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhccc-c--ccccc
Confidence 999999887532 22689999999988877655544 55889884210 0001111111111110000 0 00000
Q ss_pred HHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--CCCChhHHHHHHHHHHHHHHHHhh
Q 035636 258 HACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV--GFGSEASLLSAVITGLVNVFSTLV 335 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
+..++++...++.++... ++.++...+..++....++.+..|.|.++++. |++..+++.......++.+++.++
T Consensus 223 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~ 298 (412)
T TIGR02332 223 ---GAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIW 298 (412)
T ss_pred ---cccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHH
Confidence 000000111111122212 24466666666666677788889999999875 677888888999999999999999
Q ss_pred HHHhhhccCchhHH-HhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc
Q 035636 336 SVYAVDKAGRRALL-LEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL 414 (515)
Q Consensus 336 ~~~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 414 (515)
.++++||+++|+.. ........++. ++... .... ........+...+.... .+..+....|.+|+
T Consensus 299 ~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----------~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 364 (412)
T TIGR02332 299 WSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----------TDHN-LIQLLGIIMASMGSFSA-MAIFWTTPDQSISL 364 (412)
T ss_pred HHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------cCCH-HHHHHHHHHHHHHhhhh-hhHHHhhcccccch
Confidence 99999999977653 33332322222 11111 1111 11111122222222111 23334555678999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhh
Q 035636 415 ETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIF 451 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 451 (515)
+.|+++.|+.+..+++|++++|.+.|.+.+..+ +...
T Consensus 365 ~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~ 402 (412)
T TIGR02332 365 QARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSG 402 (412)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchh
Confidence 999999999999999999999999999999876 4433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=293.67 Aligned_cols=380 Identities=14% Similarity=0.162 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhh
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVA 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~ 99 (515)
.+++|....++.+..+.+++|....+... |.+.+++ |+|+.+.+++.+.+.++..+++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~~ 70 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF-----------------GLDVAQMGWAFSAGILGLLPGALLG 70 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888999999988876543 6666665 8999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHH
Q 035636 100 SRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITI 179 (515)
Q Consensus 100 g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (515)
|+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+
T Consensus 71 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (406)
T PRK11551 71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF 150 (406)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHH
Q 035636 180 GIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVH 258 (515)
Q Consensus 180 G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
|..+++.++..+.+. .+||+.|++.++..++..+.. .++||+|++..++++.++.
T Consensus 151 g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------- 206 (406)
T PRK11551 151 GGALASVIGVLAAGD--AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR---------------------- 206 (406)
T ss_pred HHHHHHHHHHHHccc--cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh----------------------
Confidence 999999998877543 689999999887666555443 4578887643221111000
Q ss_pred HHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHH
Q 035636 259 ACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVY 338 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (515)
+...+..++... .+..+...+..+......+....|.|.++++.|++..+.+.......++.++++++.++
T Consensus 207 --------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 207 --------APVLRALFGEGR-ATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred --------hhhHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111111111 11122223333333444566777889999889999999999999999999999999999
Q ss_pred hhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhh
Q 035636 339 AVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRT 418 (515)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (515)
+.||+++|+.+..+.....++..++... + ..+...+...+.+.+.. +..+....+..|.+|++.|+
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g 343 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAAA------------P-SFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRG 343 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc------------C-cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhh
Confidence 9999999998877655554444333221 1 22222233333333222 22345567778999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHH
Q 035636 419 AGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 419 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (515)
++.|+.+....++..++|.+.|.+.+..+ +...+.......+.+.+.
T Consensus 344 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 344 TGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred hhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 333333333333333333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=289.40 Aligned_cols=389 Identities=14% Similarity=0.161 Sum_probs=262.7
Q ss_pred HHHHHHHHhhhhhhhhcccccccccchh-HHHhhhhhhhccccccccCCcccCCcchHHHHH-----HHHHHHHHHHHHh
Q 035636 25 ACVIIAAFGGLMFGYDIGISGGVTAMDD-FLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFT-----SCLYLAALIASFV 98 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~l~~~~~~~~ 98 (515)
.....+.++.++++||..+++... |. +.++++|+ .++. .+++. ++.+++..+++++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~g~~~ 83 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ---------------VSPA-MGTLAAFATFGVGFLFRPLGGVV 83 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC---------------CCcH-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 355666778999999998876543 22 34445332 2333 34443 3556778899999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhh
Q 035636 99 ASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHIS--------MLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALN 170 (515)
Q Consensus 99 ~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 170 (515)
.|+++||+|||+++..+.++++++++++++++|+. .++++|+++|++.|..++....++.|++|+++|++..
T Consensus 84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 163 (438)
T PRK09952 84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYS 163 (438)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHH
Confidence 99999999999999999999999999999999987 5888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc------CCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHh
Q 035636 171 ISFQLFITIGIFIANMVNYAMSNV------HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIR 244 (515)
Q Consensus 171 ~~~~~~~~~G~~i~~~l~~~l~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 244 (515)
+..+.+..+|.+++..+...+... ..+|||++|++.+++.++...+....||+|++...+++.++
T Consensus 164 ~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~--------- 234 (438)
T PRK09952 164 SGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA--------- 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc---------
Confidence 999999999999998877665421 13699999999888876655555568888865332211100
Q ss_pred CCCcchHHHHHHHHHHHhhcccCcchhh-hcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHH
Q 035636 245 GVANVDNEFDSIVHACEMANQVTKPFSK-LMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSA 322 (515)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 322 (515)
.+++.+..+ .++. ++.+.......+......+....|.|.++++ .|++........
T Consensus 235 -------------------~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~ 292 (438)
T PRK09952 235 -------------------AKKRIPVIEALLRH---PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIG 292 (438)
T ss_pred -------------------ccccCCHHHHHHHc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 000111112 2221 1222222223333444556677788887754 588777655556
Q ss_pred HHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccccc
Q 035636 323 VITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGP 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (515)
...++..+++.++.|+++||++||+.+..+..+..++...+..... .....+..+....+.+.+.+.. .+
T Consensus 293 ~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~-~~ 362 (438)
T PRK09952 293 LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDMV-VC 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHHH-HH
Confidence 6667778889999999999999999887776554443332222111 1111222222223333333222 23
Q ss_pred chhhhcccCCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHHhccccC
Q 035636 403 LGWLIPSETFPLETRTAGFAFAVSTNM-LFTFLVAQAFLSMLCNMK--AGIFFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
..+.+..|.+|++.|+++.|+.+.... +++.++|.+.+++.+..+ +...+.+.+++.+++.+..+..+++
T Consensus 363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 446777899999999999999766654 899999999999988543 4444444444444444444555553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=295.89 Aligned_cols=400 Identities=14% Similarity=0.119 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhh
Q 035636 21 VYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVAS 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g 100 (515)
+.++.+.....++.+...++...++.. +|.+.+++ |+|..+.|++.+.+.+++.+++++.|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~G 79 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAA--MPEMLADL-----------------GLSRSDIGLLATLFYITYGVSKFVSG 79 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444455556667666666555433 35665555 99999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHH
Q 035636 101 RVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180 (515)
Q Consensus 101 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (515)
+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|
T Consensus 80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 80 IVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHH-hhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHH
Q 035636 181 IFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCV-GSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHA 259 (515)
Q Consensus 181 ~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
.++++.+++.+.+. .|||+.|++.+++.++..+ ..++++|+|++...+...+..+ +.+ +.
T Consensus 160 ~~~~~~~~~~l~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~-------~~ 220 (434)
T PRK11663 160 GALIPLVVGAIALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------DAL-------EL 220 (434)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------ccc-------cc
Confidence 99999999988653 6899999998887665544 3445788775321110000000 000 00
Q ss_pred HHhhcccCcchhhhcc-cCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHH
Q 035636 260 CEMANQVTKPFSKLMK-RSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSV 337 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.++.++++.++++.++ ...+++.++.+.+..+........+..|.|.+++ +.|++..+++...+...++.++++++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g 300 (434)
T PRK11663 221 AQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAG 300 (434)
T ss_pred chhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000011122233222 1223355666655555555556677788998885 4699999999999999999999999999
Q ss_pred Hhhhcc--CchhHH-HhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc
Q 035636 338 YAVDKA--GRRALL-LEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL 414 (515)
Q Consensus 338 ~l~d~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 414 (515)
++.||+ ++|+.. ........+....+... ...............+.+ .............|.+|+
T Consensus 301 ~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 368 (434)
T PRK11663 301 WGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------PFASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHK 368 (434)
T ss_pred hhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------ccccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccH
Confidence 999998 333332 22212212121111111 111111111111112211 111111223455799999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-HHHHHHHHHHHhccc
Q 035636 415 ETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFA-AWIVVMGLFAMFLLP 470 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 470 (515)
+.|+++.|+.++..++|++++|.+.|.+.+..++...+... ++.++.++..+...+
T Consensus 369 ~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 369 EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988865544444 443444444433333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=289.68 Aligned_cols=373 Identities=16% Similarity=0.172 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhh
Q 035636 22 YVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASR 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~ 101 (515)
+++.....+.++.+.++++.....+. +|.+.+++ |+|+.+.+++.+++.++..+++++.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~l~~~~~g~ 75 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYI--MYLIKADL-----------------GLTDMEGAFLATAAFIGRPFGGALFGL 75 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566777888889998776543 35555555 999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHH
Q 035636 102 VCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGI 181 (515)
Q Consensus 102 l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 181 (515)
++||+|||+++..+.++.++++++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.
T Consensus 76 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 155 (426)
T PRK12307 76 LADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN 155 (426)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 035636 182 FIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACE 261 (515)
Q Consensus 182 ~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (515)
++++.+.+.+.+. .+||+.|++..+..++........||++++..++.+. +++.++ .
T Consensus 156 ~~~~~l~~~l~~~--~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~~---------~ 212 (426)
T PRK12307 156 IIAAYFMPSFAEA--YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHSQ---------S 212 (426)
T ss_pred HHHHHHHHHHccc--CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccccc---------c
Confidence 9999998887543 6899999886554444333333356655432111000 000000 0
Q ss_pred hhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhh
Q 035636 262 MANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 341 (515)
..+..+.++++.++++..+.... .....+........+..+.|.++++.|+++.+.+.......++.++++++.+++.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~d 291 (426)
T PRK12307 213 AWSVFSLSMKGLFNRAQFPLTLC-VFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCAD 291 (426)
T ss_pred chhhhhHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112344444322222121 12222222333344667888888888999999999889999999999999999999
Q ss_pred ccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhh-hcccccchhhhcccCCCchhhhhH
Q 035636 342 KAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGF-AWSWGPLGWLIPSETFPLETRTAG 420 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~ 420 (515)
|++||+....+.....+..+.+... ...... ....++++.++ ..+..+....++.|.+|++.|+++
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 358 (426)
T PRK12307 292 RIGLKKTFSIGLLMSFLFIFPLFRI-----------PQDNYL--LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLG 358 (426)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH-----------ccccHH--HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhh
Confidence 9999998887776655544333221 111111 11122222211 112223344566899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 035636 421 FAFAVSTNMLFTFLVAQAFLSMLCNMKAGI 450 (515)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 450 (515)
.|+.+....+++.++|.+.|.+.+..+...
T Consensus 359 ~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 359 TGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 999999999999999999999999887443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=299.20 Aligned_cols=379 Identities=10% Similarity=0.028 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHh
Q 035636 19 ITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFV 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~ 98 (515)
..+..+.+..++.+++++...|...++.. .|.+.++| |++..+.|++.+.+.+++.+++++
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~ 83 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTY-----------------GLSTTELGMIGLGFSITYGVGKTL 83 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 33445556666677777777788777644 36666665 999999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHH
Q 035636 99 ASRVCSKQGRRPTMQIASFFFLVGVVLTSA-----AFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISF 173 (515)
Q Consensus 99 ~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (515)
.|+++||+|||+++..++++++++.+..++ ++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++
T Consensus 84 ~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~ 163 (467)
T PRK09556 84 VGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFW 163 (467)
T ss_pred hhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEee
Confidence 999999999999999988888777766655 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCchHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCChHHHHHHHHHHhCCCcchH
Q 035636 174 QLFITIGIFIANMVNYAMSNV-HPYGWRLSLAIAGVPALFLCVGSM-SICETPTSLIERGRLEEGRVVLQRIRGVANVDN 251 (515)
Q Consensus 174 ~~~~~~G~~i~~~l~~~l~~~-~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
..+.++|.++++.+..++... ...+||..|.+.+++.++..++.+ +.+++|+..... +.++ . ..+. .+.
T Consensus 164 ~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~--~~~ 234 (467)
T PRK09556 164 NISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEP--ISE 234 (467)
T ss_pred ecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCc--cch
Confidence 999999999999988766442 113699999888888776555444 456666421100 0000 0 0000 000
Q ss_pred HHHHHHHHHHhhcccCcchhhhc-ccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHH
Q 035636 252 EFDSIVHACEMANQVTKPFSKLM-KRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVN 329 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 329 (515)
+ .+..++.+.+..+.+ +...+++.++...+..++..........|.|.|+++ .|++..+++.......++.
T Consensus 235 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 235 E-------DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred h-------hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0 000000011111211 112344667777777766666667788899988865 6999999999999999999
Q ss_pred HHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcc
Q 035636 330 VFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPS 409 (515)
Q Consensus 330 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
+++.++.|+++||++||+..........++..++... .....+...+..++.+.... +..........
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~ 375 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-----------HATSEYMYLASLFALGFLVF-GPQLLIGVAAV 375 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-----------hcCcHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 9999999999999999887665443333322221111 11122222222223332211 11111124456
Q ss_pred cCCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 035636 410 ETFPLETRTAGFAFAVSTNML-FTFLVAQAFLSMLC 444 (515)
Q Consensus 410 ~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~ 444 (515)
|.+|++.+|++.|+.+..+++ |++++|.+.|.+.+
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 999999999999999999997 77999999999999
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=286.13 Aligned_cols=386 Identities=16% Similarity=0.130 Sum_probs=274.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHh
Q 035636 19 ITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFV 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~ 98 (515)
.++++|.....+.++.+.++++....+... |.+.+++ |++..+.+++.+++.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~ 66 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF-----------------GLTTVDAASLISAALISRWFGALM 66 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCChhhHHHHHHHHHHHHHHHHHH
Confidence 345666677778888999999988876443 5665555 899999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHH
Q 035636 99 ASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFIT 178 (515)
Q Consensus 99 ~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (515)
.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..
T Consensus 67 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 146 (405)
T TIGR00891 67 FGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA 146 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHH
Q 035636 179 IGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVH 258 (515)
Q Consensus 179 ~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
+|.++++.+++.+.+..+.+||+.|++.+++.++..+....+||++++..++++.++..+..++..+.... . +.
T Consensus 147 ~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~ 220 (405)
T TIGR00891 147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR---I---AN 220 (405)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh---h---hh
Confidence 99999999998886543335999999887777666666666888876433222211111111111000000 0 00
Q ss_pred HHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHH
Q 035636 259 ACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSV 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
. .++.....++. ...+++.+...................+.|.++. +.|++..+.+.......++.+++.++.+
T Consensus 221 ~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 295 (405)
T TIGR00891 221 I---VMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFG 295 (405)
T ss_pred h---hhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 0111122222222222223333445566777765 4699999999999999999999999999
Q ss_pred HhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhh
Q 035636 338 YAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETR 417 (515)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (515)
++.||++||+.+..+.....+........ ....+...+...+...... ...+....++.|.+|++.|
T Consensus 296 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 362 (405)
T TIGR00891 296 FLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQR 362 (405)
T ss_pred HHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchh
Confidence 99999999998877665543322221111 1112222222222222222 2233445667899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 418 TAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+++.|+.+....+++.++|++.|.+.+..|
T Consensus 363 ~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 363 AAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=280.62 Aligned_cols=337 Identities=13% Similarity=0.124 Sum_probs=246.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...+..
T Consensus 39 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~ 118 (390)
T PRK03545 39 FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSIT 118 (390)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM-SICETPTSLIERGR 232 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~ 232 (515)
.+++.|++|+++|++++++...+.++|.+++|++++.+.+. .|||+.|++.++++++..+... .+||+|+. +
T Consensus 119 ~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~ 191 (390)
T PRK03545 119 ASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY--LGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H 191 (390)
T ss_pred HHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C
Confidence 99999999999999999999999999999999999988654 6899999999988776655443 35654320 0
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-c
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-V 311 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 311 (515)
.++ .++.++.+++ +.++......+...........+.+.+.++ .
T Consensus 192 ~~~-------------------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (390)
T PRK03545 192 SGS-------------------------------LKSLPLLFRR----PALVSLYLLTVVVVTAHFTAYSYIEPFVQQVA 236 (390)
T ss_pred cch-------------------------------HHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0011223332 223322222222223333444566656555 5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCV 391 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
|++..+.+......+++.++++++.+++.||+++|+.. .+.....++...+... ..+.+...+...+
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l 303 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA------------ANSEWHLSVLSIF 303 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH------------hchHHHHHHHHHH
Confidence 89999999999999999999999999999999987644 3333333333222221 1122333333444
Q ss_pred HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMF 467 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (515)
.+.+.. ...+.......+..| +.|++++|+.+...++|..++|.+.|.+.+..+....+...+...+.+.+...
T Consensus 304 ~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 304 WGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 444432 222333455567766 68899999999999999999999999999999866555555544444444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=288.50 Aligned_cols=398 Identities=16% Similarity=0.160 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhh
Q 035636 21 VYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVAS 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g 100 (515)
++++.....+.++.+.++++....++.. |.+.+++ |+|..+.+++.+.+.++..+++++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~g 76 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF-----------------GLTTVQAASLISAAFISRWFGGLLLG 76 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666778888888887766433 5565555 89999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHH
Q 035636 101 RVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180 (515)
Q Consensus 101 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (515)
+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|
T Consensus 77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 156 (496)
T PRK03893 77 AMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIG 156 (496)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHH-HHHH-
Q 035636 181 IFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFD-SIVH- 258 (515)
Q Consensus 181 ~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 258 (515)
..+++.+++.+.+. .+||+.|++..+..++..+....+||++++..++++.++.++..+.....+....... ....
T Consensus 157 ~~~~~~~~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (496)
T PRK03893 157 AVVAAQVYSLVVPV--WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA 234 (496)
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999988553 7899999886665555444445578776543222211111111111000000000000 0000
Q ss_pred -H--HHhhcccCcchh-------------hh--cccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHH
Q 035636 259 -A--CEMANQVTKPFS-------------KL--MKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASL 319 (515)
Q Consensus 259 -~--~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 319 (515)
. ..........+. .. .....+++.........+...........+.|.+++ +.|++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g 314 (496)
T PRK03893 235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA 314 (496)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH
Confidence 0 000000000000 00 000111122222222222222222345577888885 6799999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 035636 320 LSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWS 399 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
...+...++.+++.++.+++.||++||+.+..+..+..+..+.+... .....+....... ...+...+
T Consensus 315 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~ 382 (496)
T PRK03893 315 NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLF-FQQMLGQG 382 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHH-HHHHHhcc
Confidence 99999999999999999999999999998877665544443322221 1111122212111 11112222
Q ss_pred cccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 035636 400 WGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF 451 (515)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 451 (515)
..+....++.|.+|++.|++++|+.+....+|+.++|.+.|.+.+..++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 383 ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 2344456678999999999999999999999999999999999999885543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=255.88 Aligned_cols=387 Identities=17% Similarity=0.210 Sum_probs=298.1
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
++.++.+..+..++....+.|..+++..+|..+|++|||+.+.......++...+.+.++|+..+++.|.+.|+|.|+ .
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 344578899999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER 230 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 230 (515)
|...++-.|..|..+|...+-.. ..+.+|.+....++...... .||||.....+.+..+.....+++|||||+...+
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~--~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~ 260 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN--FGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK 260 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc
Confidence 88999999999999999888777 99999999999999888544 7999999999988888888888899999999999
Q ss_pred CChHHHHHHHHHHhCCCcchH-----------HHH----HHHHH-HHhhcccCcchhhhcccCCchhHHHHHHHHHHHHh
Q 035636 231 GRLEEGRVVLQRIRGVANVDN-----------EFD----SIVHA-CEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQF 294 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (515)
+++++|.+.++++...|...- +.+ +..+. .+..++......+++.+..+++++....+.+. +-
T Consensus 261 G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfg-na 339 (528)
T KOG0253|consen 261 GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFG-NA 339 (528)
T ss_pred CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHh-hH
Confidence 999999999999876552110 000 00000 01112223455667766666555544444433 33
Q ss_pred hhHHHHHHhHHHHHHHc--------------------CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhH
Q 035636 295 TGINAIMFYAPVLFQTV--------------------GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVV 354 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~ 354 (515)
..+++......-+++.. ..+...-..-..+..+..+.|.++.+++.||+|||+.+...++
T Consensus 340 fsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~ 419 (528)
T KOG0253|consen 340 FSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLI 419 (528)
T ss_pred HHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHH
Confidence 33444444333333321 1222333455667789999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHH
Q 035636 355 QMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL 434 (515)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 434 (515)
.+++..+++.... ......+..+...++.+.++. ..|.|..|.+|+..|+++.|.+...+++|+++
T Consensus 420 ~f~iflfll~~c~-------------~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~ 485 (528)
T KOG0253|consen 420 LFGIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIF 485 (528)
T ss_pred HHHHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhh
Confidence 8888777666532 223344444555555555554 55899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccccCCCCCh
Q 035636 435 VAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETKGVPV 477 (515)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (515)
.|.+. ...+..-....+++.+++++.++...++..|+++|+.
T Consensus 486 ~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 486 SPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99988 4444444677788888888888888888789988863
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=273.99 Aligned_cols=345 Identities=13% Similarity=0.083 Sum_probs=254.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~ 119 (393)
T PRK09705 40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMP 119 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccc-cCchhhHHhhCCh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSI-CETPTSLIERGRL 233 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp~~~~~~~~~ 233 (515)
.++.+++| ++|+++++++..+..+|..+++.+++++.+.. .+||..+.+.++..++..+..+.. ++.|+ .
T Consensus 120 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 190 (393)
T PRK09705 120 SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS-ETWYQTLAWWALPAVVALFAWWWQSAREVA-------S 190 (393)
T ss_pred HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------c
Confidence 99999997 77999999999999999999999998876532 379998877666655444333322 11111 0
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCC
Q 035636 234 EEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGF 313 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (515)
+ +++ +....+. .+++..+...+..+.....+.....|.|.++++.|.
T Consensus 191 ~----------------------------~~~-~~~~~~~----l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~ 237 (393)
T PRK09705 191 S----------------------------HKT-TTTPVRV----VFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGA 237 (393)
T ss_pred c----------------------------cCC-CcCCccc----ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 000 0011111 122334444445555555667788899999888899
Q ss_pred CChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 035636 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFV 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+..+++....+.+++.++++++.+++.||++||+....+..+..++..++... +..... .. ..+.+
T Consensus 238 s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~-~~--~~l~g 303 (393)
T PRK09705 238 SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQLPV-LW--AMVCG 303 (393)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cchHHH-HH--HHHHH
Confidence 99999999999999999999999999999999998887776666655544321 111111 11 22233
Q ss_pred HhhhcccccchhhhcccCC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHH-HHHHHHHHHHHHhccc
Q 035636 394 MGFAWSWGPLGWLIPSETF-PLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFF-AAWIVVMGLFAMFLLP 470 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 470 (515)
.+.+.. .|.......+.. |++.+++..|+.+...++++.++|.+.|++.|..| +...+.. ...+.+..+..+.+.|
T Consensus 304 ~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 304 LGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred Hhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 333322 233333334555 46789999999999999999999999999999987 4443333 3334444444455666
Q ss_pred cCCCCC
Q 035636 471 ETKGVP 476 (515)
Q Consensus 471 ~~~~~~ 476 (515)
|++++.
T Consensus 383 ~~~~~~ 388 (393)
T PRK09705 383 ARFPQL 388 (393)
T ss_pred ccccch
Confidence 666553
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=278.74 Aligned_cols=360 Identities=19% Similarity=0.245 Sum_probs=242.8
Q ss_pred HHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHH-HHHH-----HHHHHHHHHhh
Q 035636 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLF-TSCL-----YLAALIASFVA 99 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~l~~~~~~~~~ 99 (515)
.....+++.+++++|...++... |.+.+++ +.++.+.+.. .+.. .++..+++++.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 76 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTF-----------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVL 76 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45667789999999999887544 6776666 5566555433 3322 23335789999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhh
Q 035636 100 SRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHIS--------MLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNI 171 (515)
Q Consensus 100 g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 171 (515)
|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|+++++
T Consensus 77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 9999999999999999999999999999999987 46889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc------CCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhC
Q 035636 172 SFQLFITIGIFIANMVNYAMSNV------HPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRG 245 (515)
Q Consensus 172 ~~~~~~~~G~~i~~~l~~~l~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 245 (515)
+...+..+|..+++.+++.+... ...|||++|++..+...+........||++++..+++
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------------- 222 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-------------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh--------------
Confidence 99999888888888887776321 2379999999865543332222222344322110000
Q ss_pred CCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHH
Q 035636 246 VANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVI 324 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 324 (515)
+.+.+..++...+ .++......+..+.....++....|.|.++++ .|++..+.++....
T Consensus 223 -----------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~ 282 (434)
T PRK15075 223 -----------------RPSMREIFRSLAA---NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLC 282 (434)
T ss_pred -----------------ccccccHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0000001111111 11222222333333445567788899999876 59999888888888
Q ss_pred HHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccch
Q 035636 325 TGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLG 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (515)
..++.+++.++.|++.||++||+.+..+.....+.......... .............+...+++. ..+..
T Consensus 283 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~-~~~~~ 352 (434)
T PRK15075 283 VGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV---------AAPSFARMLAVELWLSFLYGS-YNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---------cCCchHHHHHHHHHHHHHHHH-HHhhH
Confidence 89999999999999999999999877654443222111111100 111111111212222222222 22334
Q ss_pred hhhcccCCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccc
Q 035636 405 WLIPSETFPLETRTAGFAFAVSTNML-FTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 448 (515)
..+..|.+|++.|+++.++.+..... ++.++|.+.+.+.+..++
T Consensus 353 ~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 46678999999999999997665554 588899999999998874
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=268.39 Aligned_cols=334 Identities=12% Similarity=0.044 Sum_probs=233.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.++++|+++|++.+. .+...
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~ 100 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAF 100 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHH
Confidence 99999999999999999999999999999999999987766555555444334447999999999999999986 55666
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCCh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRL 233 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~ 233 (515)
..++|++|+++|++++++.+.+..+|.+++++++..+.+. .|||+.|++.++++++..++. +++||+|++..+ +.
T Consensus 101 ~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~--~~ 176 (368)
T TIGR00903 101 APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--GGLQLLIIPIAAVAAAGIILVLAALPALPFQAAE--GF 176 (368)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--Cc
Confidence 6779999999999999999999999999999999999653 799999999888877655544 458998864210 00
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCC
Q 035636 234 EEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGF 313 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (515)
+. + +. .+++++++++ +.++...+..++....++.+..|.|.++++.|+
T Consensus 177 ~~------------------~---~~-------~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~ 224 (368)
T TIGR00903 177 GF------------------K---DA-------VKEFGALAGR----KDLWIIGAILGFGVALFDNLAIWLEAALRPAGL 224 (368)
T ss_pred ch------------------H---HH-------HHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 00 0 00 0123444443 556777777888888888999999999988888
Q ss_pred CChhHHHHHHHHHHHHHHHHhhHHHhhhccCch---hHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 035636 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR---ALLLE-AVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLV 389 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (515)
+.. .+.......+.+.++ .+++.||..|| +.... .....++....+.. .. ..+......
T Consensus 225 s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~------------~~-~~~~~~~~~ 287 (368)
T TIGR00903 225 EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF------------EL-NRLALFAFI 287 (368)
T ss_pred ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------------cc-ccHHHHHHH
Confidence 764 555555555555544 46777776543 32222 22222222222211 11 122222222
Q ss_pred HHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHH
Q 035636 390 CVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (515)
++.+.+. ....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..+++..++..+..
T Consensus 288 ~l~~~~~-~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 288 GIAGLLM-LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHhh-hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22223456778899999999999999999999999999999988874 4 344555555555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=271.79 Aligned_cols=436 Identities=20% Similarity=0.272 Sum_probs=305.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHH
Q 035636 18 RITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASF 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~ 97 (515)
...|++...+.++.++.|.++||...++.+. |.+...|. .. + + .+ =+.++...+.+..+..+|.++|++
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~-~~---~-~---~~-g~~ps~i~~~Vn~~A~vGti~GQl 102 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYY-HG---D-E---SG-GHYPSGVLALVNAAALVGTIFGQL 102 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhc-CC---C-C---CC-CcCCchHHHHHHHHHHHHHHHHHH
Confidence 3478888889999999999999999887443 44554442 11 1 1 11 156788889999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhh
Q 035636 98 VASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF-------HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALN 170 (515)
Q Consensus 98 ~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 170 (515)
+.|+++||+|||+++...+.++.+++++++++. -++++...|++.|+|.|+.+|.+.+..+|...+++||...
T Consensus 103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i 182 (538)
T KOG0252|consen 103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI 182 (538)
T ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence 999999999999999999999999999888863 2578899999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc----cC---------CCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhC-ChHHH
Q 035636 171 ISFQLFITIGIFIANMVNYAMSN----VH---------PYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERG-RLEEG 236 (515)
Q Consensus 171 ~~~~~~~~~G~~i~~~l~~~l~~----~~---------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~-~~~~~ 236 (515)
+.+-+..+.|.+.|.+++..+.. .. +.-||..+.+.+++++..+...+.+||++++..... +.+++
T Consensus 183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA 262 (538)
T ss_pred EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh
Confidence 77777777776666665544422 11 134999999999999999999899999998764332 33333
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhhcccCcc---hhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCC
Q 035636 237 RVVLQRIRGVANVDNEFDSIVHACEMANQVTKP---FSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGF 313 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (515)
.+ +..+..+.+-+.+ .+.....+.++.+ +...+.+. .-+.+...+..++..-..++....+...+++..|+
T Consensus 263 ~~---d~~k~~~~~~~~~--~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~ 336 (538)
T KOG0252|consen 263 AG---DMKKVLSVDIEAE--STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV 336 (538)
T ss_pred hh---ccccccccccchh--hccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc
Confidence 21 1111111100000 0000000111111 22222222 22445666667777667778888888888888877
Q ss_pred CChhHHH---------HHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHH
Q 035636 314 GSEASLL---------SAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAII 384 (515)
Q Consensus 314 ~~~~~~~---------~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (515)
.+..... ...+...+.++|.++...++|++|||+..+.++.++.+..+.++.... +......
T Consensus 337 ~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~---------~~~~~~G 407 (538)
T KOG0252|consen 337 IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN---------QLENTIG 407 (538)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc---------cccccCc
Confidence 6544332 122233344456667778899999999999999988888777766331 1112223
Q ss_pred HHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hccch-hhHHHHHHH
Q 035636 385 VVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC-----NMKAG-IFFFFAAWI 458 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~ 458 (515)
..++..+..++..++.+.....+.+|.+|++.|+++.|+....+-.|++++...+.++.+ ..+.. .+++++++.
T Consensus 408 f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~ 487 (538)
T KOG0252|consen 408 FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCM 487 (538)
T ss_pred eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHH
Confidence 333334444444555556667888999999999999999999999999999999999998 45533 444555444
Q ss_pred HHHHHHHHhccccCCCCChHhh
Q 035636 459 VVMGLFAMFLLPETKGVPVDAV 480 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (515)
....+..+++||+++++++|+
T Consensus 488 -~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 488 -LLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred -HHhHheeEEeecccccCHHHh
Confidence 455555667889999998887
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=280.28 Aligned_cols=385 Identities=11% Similarity=0.013 Sum_probs=280.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhh
Q 035636 23 VVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRV 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l 102 (515)
+|..+..++++.++...|.++++.. +|++.+++ |.+..+.+|+.+.|.++..++.+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l-----------------~~s~~~~~~~~~~~~l~~~~~~~~~G~l 64 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL-----------------GASGNELLWIIDIYSLVMAGMVLPMGAL 64 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh-----------------CCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999988744 57887776 8899999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhcc-CCCCcchhhhHHHHHHHHHH
Q 035636 103 CSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELA-PAKIRGALNISFQLFITIGI 181 (515)
Q Consensus 103 ~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~ 181 (515)
+||+|||++++.+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++++++.....+|.
T Consensus 65 ~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~ 144 (495)
T PRK14995 65 GDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA 144 (495)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887766 67899999999999999999
Q ss_pred HHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHH---------HHHhC--CCcc
Q 035636 182 FIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVL---------QRIRG--VANV 249 (515)
Q Consensus 182 ~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~---------~~~~~--~~~~ 249 (515)
.+||.+++.+.+. .+||+.|++...+.++..++. +++||+|+.. +++.+...... ..+.+ .+..
T Consensus 145 ~~gp~lgg~l~~~--~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~ 220 (495)
T PRK14995 145 AFGPLVGGILLEH--FYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFL 220 (495)
T ss_pred HHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCC
Confidence 9999999999664 789999999887777655544 4477765321 11111111000 00000 0000
Q ss_pred hHH--HHH-------HHHHHHhhcccCcch--hhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChh
Q 035636 250 DNE--FDS-------IVHACEMANQVTKPF--SKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEA 317 (515)
Q Consensus 250 ~~~--~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 317 (515)
... ... .......+.+.+.+. .++++. +.+....+..+...........+.|.+++. .|+++.+
T Consensus 221 ~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ 296 (495)
T PRK14995 221 SLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH----RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLE 296 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 000 000 000001111111221 233333 334444455555555566677788888876 4999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhh
Q 035636 318 SLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFA 397 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
++....+..++..++.++.|++.||+++|+.+..+..+..++..++.... .....+.......+.+.+.+
T Consensus 297 ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g 366 (495)
T PRK14995 297 AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAA 366 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999988877777666655544321 11222333344455555555
Q ss_pred cccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 398 WSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
....+. .....+..|+++++.+.++.++...+|+.+|+.+.+.+.++
T Consensus 367 ~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 367 SALLAS-TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHH-HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 44456889999999999999999999999999999998765
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=275.62 Aligned_cols=374 Identities=11% Similarity=0.050 Sum_probs=246.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF----HISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~ 150 (515)
|+|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999888763 78889999999999999988
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHH-HHHHHHHHhhccCCCchHHHHHhhhHHHHHHHH-hhccccCchhhHH
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIF-IANMVNYAMSNVHPYGWRLSLAIAGVPALFLCV-GSMSICETPTSLI 228 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp~~~~ 228 (515)
+.....+.|++|+++|++++++++.+.++|.. .+++++..+... .+||+.|++.+++.++..+ ..+++||+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 88888999999999999999999999999864 555554333222 4899999998887766544 4455788775321
Q ss_pred hhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhc-ccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 035636 229 ERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLM-KRSSRPPLVIAILLQVFQQFTGINAIMFYAPVL 307 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (515)
.+ +.++.++ + .+.+ .+.++.++.+.++.+ +...+++.++...+..++.....+....|.|.+
T Consensus 217 ~~-~~~~~~~---~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~ 279 (452)
T PRK11273 217 LP-PIEEYKN---D------YPDD-------YNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 279 (452)
T ss_pred CC-Chhhhhh---c------cccc-------cccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111000 0 0000 000000111222221 112234556666666655555567778899999
Q ss_pred HHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc--CchhHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 308 FQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA--GRRALLLE-AVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 308 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
+++ .|++..+++....+..++.+++.++.|+++||+ +||+.... ...+..++..++... .....+
T Consensus 280 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~ 348 (452)
T PRK11273 280 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------PAGNPT 348 (452)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------cccChH
Confidence 977 589988888888888999999999999999998 44443221 112222222211110 111112
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccchhhHHHHHHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFL-VAQAFLSMLCNMKAGIFFFFAAWIVVMG 462 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (515)
.........+.... ........+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|..++...+...+...+.+
T Consensus 349 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~ 427 (452)
T PRK11273 349 VDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 427 (452)
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 22222222222211 111122344569999999999999999999998765 7999999999988655544444333434
Q ss_pred HHHHhccccCCCCChHh
Q 035636 463 LFAMFLLPETKGVPVDA 479 (515)
Q Consensus 463 ~~~~~~~~~~~~~~~~~ 479 (515)
++......+.++|+.+|
T Consensus 428 ~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 428 VILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHhccccchHHH
Confidence 43333333333443333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=264.57 Aligned_cols=328 Identities=17% Similarity=0.206 Sum_probs=241.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|+++.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+..
T Consensus 50 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 129 (394)
T PRK10213 50 LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMS 129 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM-SICETPTSLIERGR 232 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~ 232 (515)
.+++.|++|+++|++++++...+.++|.+++|.+++.+.+. .+||+.|++.++++++..+... ..||+|+. +
T Consensus 130 ~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~-- 202 (394)
T PRK10213 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---P-- 202 (394)
T ss_pred HHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---c--
Confidence 99999999999999999999999999999999999999654 6899999998877766554433 35664421 0
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH-HHHHHHc
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA-PVLFQTV 311 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (515)
++ ...+..+.++ ++.++...+..+...........+. |.+.++.
T Consensus 203 -~~------------------------------~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 247 (394)
T PRK10213 203 -SH------------------------------QKQNTFRLLQ----RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLA 247 (394)
T ss_pred -cc------------------------------chhHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0001122222 2444444333333333344444454 7777778
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCV 391 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
|+++.+.+......+++.+++.++.+++.||.++ +.+.............+... ....+.......+
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l 314 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW------------GSDKIVATGVAII 314 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999544 43333333322222222221 1123334444445
Q ss_pred HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWI 458 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (515)
.+.++... .+....++.+..| +.+++..+......++|..+++.+.|.+.+..|....+..+++.
T Consensus 315 ~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 315 WGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred HHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 55554433 3333445567777 45667778888888999999999999999988866555555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=270.25 Aligned_cols=338 Identities=14% Similarity=0.117 Sum_probs=247.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+...+..
T Consensus 33 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (377)
T TIGR00890 33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIA 112 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGR 232 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~ 232 (515)
...+.|++| ++|+++.++...+.++|..+++++.+.+.+. .+||+.|++.+++.++..+..++ ++++|+.. .+++
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (377)
T TIGR00890 113 LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN 188 (377)
T ss_pred HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC
Confidence 889999987 5699999999999999998766666655432 68999999999888776655544 44443210 0000
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcC
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVG 312 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (515)
.+. ++++...++.+++ +.++...+..+...........+.+.+.++.|
T Consensus 189 ~~~----------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (377)
T TIGR00890 189 IEV----------------------------SVKDYTVWEMLRT----PQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLG 236 (377)
T ss_pred ccc----------------------------chhhhhHHHHHcC----ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 000 0000112233332 22333333333333333444455666677788
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVF 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.+..+.+.......++.++++++.+++.||++||+.+..+.....++.+++.... ....+.......+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----------MLNDVLFLATVALV 305 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----------cchhHHHHHHHHHH
Confidence 8888889999999999999999999999999999998887777776665544321 11122222222333
Q ss_pred HHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 035636 393 VMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIV 459 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (515)
+.+.+.. .+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..++...+...++..
T Consensus 306 g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 306 FFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 3333322 23334566899999999999999999999999999999999999888665554444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=271.57 Aligned_cols=382 Identities=17% Similarity=0.242 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhh
Q 035636 23 VVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRV 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l 102 (515)
++.....+.+..+..+++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l 75 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW-----------------GLDPVQLGFLFSAGLIGMAFGALFFGPL 75 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc-----------------CCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444445556667777776655433 34555444 8899999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHH
Q 035636 103 CSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182 (515)
Q Consensus 103 ~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 182 (515)
+||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..
T Consensus 76 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 155 (398)
T TIGR00895 76 ADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA 155 (398)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchHHHHHhhhHHHHHHH-HhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 035636 183 IANMVNYAMSNVHPYGWRLSLAIAGVPALFLC-VGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACE 261 (515)
Q Consensus 183 i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+++.+++.+.+. .+||+.|++.++..++.. +...++||++++..++ +.++..+..++.......+.+. ...++.+
T Consensus 156 ~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 231 (398)
T TIGR00895 156 VGGFLAGWLIPV--FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQKA 231 (398)
T ss_pred HHHHHHHHHhhc--ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccccccc
Confidence 999999988554 689999999876555544 4445688887655443 3333333322222111100000 0000000
Q ss_pred hhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhh
Q 035636 262 MANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 341 (515)
.++..+...+..++. ...+..+.+.+..+...........+.|++.++.|++..+.+.......++.+++.++.+++.|
T Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (398)
T TIGR00895 232 TQGTKRSVFKALFQG-KTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310 (398)
T ss_pred ccchhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000001112222222 2223333444444455555667778889888888999999999999999999999999999999
Q ss_pred ccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHH
Q 035636 342 KAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGF 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (515)
|+++|+.... .....+...++.... ...+......++.+.+.+.. .+....+..|.+|++.|+++.
T Consensus 311 ~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 376 (398)
T TIGR00895 311 RLGPRVTALL-LLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGV 376 (398)
T ss_pred hcchHHHHHH-HHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHH
Confidence 9999844433 333333322222211 12223333344444444333 345567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035636 422 AFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~ 442 (515)
|+.+.+..+|..++|.+.|.+
T Consensus 377 g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 377 GWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999998875
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.95 Aligned_cols=340 Identities=16% Similarity=0.146 Sum_probs=242.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA--------FHISMLILGRLALGIG 145 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~--------~~~~~l~~~r~l~G~~ 145 (515)
+|.|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++
T Consensus 46 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 125 (399)
T PRK05122 46 LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIG 125 (399)
T ss_pred cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhh
Confidence 48899999999999999999999999999999999999999999988887766553 2567899999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 225 (515)
.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+. .|||..+++.++..++..+.....|++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (399)
T PRK05122 126 ESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW--GGLAGLGLLIMLLALLGLLLARPRPAVPP 203 (399)
T ss_pred HHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999988654 68999988877765554443332333221
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
.+++ +.++++.+++. +...........++.....+.+
T Consensus 204 ---~~~~----------------------------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 240 (399)
T PRK05122 204 ---VKGE----------------------------------RLPFRRVLGRV------WPYGMGLALASIGFGTIATFIT 240 (399)
T ss_pred ---CCcc----------------------------------chhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00111111110 1111111112223344556677
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 035636 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIV 385 (515)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (515)
.+.++.|.+ +.+.......++.+++.++.+++.||+++|+.+..+..+..++..++... .+.+..
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 305 (399)
T PRK05122 241 LYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMA 305 (399)
T ss_pred HHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHH
Confidence 777766663 44566677888899999999999999999998887777666665554431 122333
Q ss_pred HHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 035636 386 VVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (515)
.+...+.+.+.+... +.......|..|++.|+++.|+.+....+|..+++.+.|.+.+..++...+...++..+.+++.
T Consensus 306 ~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 306 LIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 344444444444332 3333445688899999999999999999999999999999999888665555554444444444
Q ss_pred HhccccCCC
Q 035636 466 MFLLPETKG 474 (515)
Q Consensus 466 ~~~~~~~~~ 474 (515)
.+..+++++
T Consensus 385 ~~~~~~~~~ 393 (399)
T PRK05122 385 TWLLYRRAP 393 (399)
T ss_pred HHHhccccc
Confidence 444444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=272.58 Aligned_cols=362 Identities=14% Similarity=0.125 Sum_probs=256.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+...+..
T Consensus 24 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 103 (399)
T TIGR00893 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGI 103 (399)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGR 232 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~ 232 (515)
..++.|++|+++|++++++.+....+|.++++.+++.+.+. .+||+.|++.+++.++..+...+ .||+|+.. +..
T Consensus 104 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 179 (399)
T TIGR00893 104 ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH--FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWL 179 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccC
Confidence 99999999999999999999999999999999999987543 68999999988887776655544 66655311 111
Q ss_pred hHHHHHH-HHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-
Q 035636 233 LEEGRVV-LQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT- 310 (515)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (515)
.++.++. .+.... + .+..+.++.++...++.+ +++.++...+..+...........+.|.++++
T Consensus 180 ~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (399)
T TIGR00893 180 TEEEKYIVVGGLLA---------E-QQGKGPSTPKKYQIKELL----KDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE 245 (399)
T ss_pred CHHHHhhcchhhcc---------c-cccccccCCCccchHHHh----cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1110000 000000 0 000001111112223333 33556666666666666777788888888865
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLE-AVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLV 389 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (515)
.|.+..+.+.......++.+++.++.+++.||++||+.... ......++.+.......... .....+.... .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~ 318 (399)
T TIGR00893 246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN------YVNIPYAALA-L 318 (399)
T ss_pred hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc------cchhHHHHHH-H
Confidence 58898999999999999999999999999999998862111 11111111111111111000 0111222222 2
Q ss_pred HHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHH
Q 035636 390 CVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVM 461 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 461 (515)
...... ..+..+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +...+...++..+.
T Consensus 319 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 390 (399)
T TIGR00893 319 VALGFF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390 (399)
T ss_pred HHHHHh-chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence 222222 222456677888999999999999999999999999999999999999887 55444444433333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=262.51 Aligned_cols=355 Identities=14% Similarity=0.094 Sum_probs=250.8
Q ss_pred HHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcch
Q 035636 30 AAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRR 109 (515)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr 109 (515)
.+++.+..+.......+. +|.+.+++ |++..+.|++.+.+.++..++++++|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~--l~~~~~~~-----------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r 68 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGV--LTELAHDV-----------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK 68 (382)
T ss_pred HHHHHHHHHhhHHHHHhC--hHHHHHHc-----------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 344555555555554433 35666655 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 035636 110 PTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNY 189 (515)
Q Consensus 110 ~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 189 (515)
+++..+..+.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 69 HILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCc
Q 035636 190 AMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTK 268 (515)
Q Consensus 190 ~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
.+.+. .+||+.|++.+++.++..+.. .++||.++ +.+.+. ++
T Consensus 149 ~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~~-------------------------------~~ 191 (382)
T PRK10091 149 YLSQE--FSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGGL-------------------------------RE 191 (382)
T ss_pred HHhhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccCH-------------------------------HH
Confidence 88553 689999999988876655543 44776532 000000 00
Q ss_pred chhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh
Q 035636 269 PFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA 347 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (515)
.+ +.+++ +..+......+....+......+.+.+++ ..|+++.+.+......+++.++++++.+++.||+++|+
T Consensus 192 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~ 266 (382)
T PRK10091 192 QF-HFLRS----PAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR 266 (382)
T ss_pred HH-HHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence 00 11111 22233333222322333333445554554 46999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH
Q 035636 348 LLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST 427 (515)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 427 (515)
.+..+..+.+++.+++.... ...+...+...+...+......+.......+..|++.++.+ ..+..
T Consensus 267 ~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 332 (382)
T PRK10091 267 IAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIA 332 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHH
Confidence 88887777666654443321 11222233333333333222223333344455555555544 34677
Q ss_pred HHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHH
Q 035636 428 NMLFTFLVAQAFLSMLCNM-KAGIFFFFAAWIV 459 (515)
Q Consensus 428 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 459 (515)
..+|..++|.+.|.+.|.. ++...+...++..
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~ 365 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLS 365 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHH
Confidence 8999999999999999964 5554444443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=275.04 Aligned_cols=392 Identities=12% Similarity=0.066 Sum_probs=265.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhh-----ccccccccCCcccCCcchHHHHHHHHHHHHHH
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVY-----EKKKHAHEDNYCKYDNQFLQLFTSCLYLAALI 94 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~ 94 (515)
.+.++.+..+++++......|....+... +.+.++-....+ +.+.....+.|++++..+.|++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 44455566666666667777776665443 233321100000 00111112337899999999999999999999
Q ss_pred HHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhH
Q 035636 95 ASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA--FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNIS 172 (515)
Q Consensus 95 ~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 172 (515)
++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887654 5688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchH
Q 035636 173 FQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDN 251 (515)
Q Consensus 173 ~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
...+..+|.++++++++.+.+.. .+||+.|++.+++.++..+++++ .+|+|+... +.++++.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~--------------- 234 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESW-GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK--------------- 234 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH---------------
Confidence 99999999999999999886531 38999999999988777666655 566664211 1111110
Q ss_pred HHHHHHHHHHh---hcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHH
Q 035636 252 EFDSIVHACEM---ANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGL 327 (515)
Q Consensus 252 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 327 (515)
+...+..+. +.+.+.++++.++ ++.++...+..+......+.+..|+|.++++ .|++..+.++..++..+
T Consensus 235 --~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 235 --KYINSSLQGQKGSTRQSLPIKAIPK----SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred --HHHHhhcccccCCCCCCCCHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 000000000 0111223444443 4667777777777777788888999998865 59999999999999999
Q ss_pred HHHHHHhhHHHhhhccCchhHHH---hhhHHHHHHH---HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccc
Q 035636 328 VNVFSTLVSVYAVDKAGRRALLL---EAVVQMFITQ---SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWG 401 (515)
Q Consensus 328 ~~~~~~~~~~~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
+.+++.+++|++.||+++|+... .......++. ......... .....+..+..+.+...+.... .
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~-~ 379 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--------LSAAFYLTIIILTLANAVSSGP-L 379 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHHhhhh-h
Confidence 99999999999999876442211 0011111111 111111100 0111222222333333322222 2
Q ss_pred cchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 402 PLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+.......|..| +.+|.+.|+.+..+.++++++|.+.|.+.+..
T Consensus 380 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 380 AGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred hhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 223344456666 58999999999999999999999999988754
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=263.31 Aligned_cols=364 Identities=10% Similarity=0.058 Sum_probs=262.4
Q ss_pred HHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 035636 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSK 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr 105 (515)
+...++++.+..+++....+.. +|++.+++ |+|..+.+++.+.+.+++.+++++.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr 68 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMV--MGPIAEYF-----------------NLPVSSMSNTFTFLNAGILISIFLNAWLMEI 68 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888887666644 36676666 8999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHH
Q 035636 106 QGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIAN 185 (515)
Q Consensus 106 ~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 185 (515)
+|||+++..+..+.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcc
Q 035636 186 MVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQ 265 (515)
Q Consensus 186 ~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.+.+.+... ..+||+.|.+.+++.++..++.++ .+.|+. ++++.+ +
T Consensus 149 ~~~~~l~~~-~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~-----------------------------~- 194 (394)
T PRK03699 149 IIAAYLLAR-SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK-----------------------------A- 194 (394)
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc-----------------------------c-
Confidence 988776432 268999999988877665544332 222210 000000 0
Q ss_pred cCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccC
Q 035636 266 VTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAG 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~ 344 (515)
.+.. .+. .+++.++...+..++.......+..|.|.++++ .|+++.+.+...+...++..+++++.+++.||++
T Consensus 195 ~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~ 269 (394)
T PRK03699 195 DKPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFD 269 (394)
T ss_pred cCcc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 011 112334555555555555566778899999855 5999999999999999999999999999999999
Q ss_pred chhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHH
Q 035636 345 RRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFA 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 424 (515)
+|+.+.....+..+...++.. .+ +.+......++.+.+.... .+....+..+..| +.++...+..
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~ 334 (394)
T PRK03699 270 LQRILTVLAGLALVLMYLFVN------------TD-DPSHLLYAILGLGFFSSAI-YTTIITLGSQQTK-VASPKLVNFI 334 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHH------------cC-CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHcc-CCCHHHHHHH
Confidence 999887666555444333322 11 1222222233333332222 2333444556665 4456778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 035636 425 VSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMG 462 (515)
Q Consensus 425 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (515)
.....+|+.++|.+.|.+.+..++...+....+..+..
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 89999999999999999999888554433333333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=272.38 Aligned_cols=386 Identities=18% Similarity=0.216 Sum_probs=280.7
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 72 NYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 72 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
+.++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.+..++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 34477888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhC
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERG 231 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 231 (515)
....++.|++++++|+.+..+ ......+..+++..++++.. +||+.+++..++.++.++.+++.||+|||+..++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 999999999999999999999 66666666777777777644 6999999999999988888777789999999999
Q ss_pred ChHHHHHHHHHHhCCC----cchHHHHHHHHHHH--h-hcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH
Q 035636 232 RLEEGRVVLQRIRGVA----NVDNEFDSIVHACE--M-ANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304 (515)
Q Consensus 232 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
+.+++.+.++++.+.+ +.+...+......+ . ..+++..+.++++....++......+..+.....++ -.
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~----gl 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYY----GL 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHH----hh
Confidence 9999999999987654 12222211111111 1 111224456666554322323333233221111111 12
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHH
Q 035636 305 PVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAII 384 (515)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (515)
+......|.+ ........+..........+...|++|||.....+.....++++...+... ....+.
T Consensus 342 ~~~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 408 (521)
T KOG0255|consen 342 SLNVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGGWL 408 (521)
T ss_pred hhhhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchhHH
Confidence 2222233332 234445555577888888899999999999999999999999888887653 111122
Q ss_pred HHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 035636 385 VVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLF 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (515)
..+...+..++.+.++... +.+.+|++|+..|..+.+..+....++++++|.+...............++....+.+.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLL 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 3333333333334444433 778899999999999999999999999999998876554422222222246666666777
Q ss_pred HHhccccCCCCChHhh
Q 035636 465 AMFLLPETKGVPVDAV 480 (515)
Q Consensus 465 ~~~~~~~~~~~~~~~~ 480 (515)
...++||++++.+.+.
T Consensus 488 ~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 488 SLLLLPETKGKPLPGT 503 (521)
T ss_pred HHhcCcccCCCCCchh
Confidence 7788999999987665
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=270.62 Aligned_cols=355 Identities=12% Similarity=0.082 Sum_probs=226.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|++.|++.+... ..
T Consensus 66 ~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~ 144 (476)
T PLN00028 66 LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SC 144 (476)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999988654 45
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhh----cc---CCCchHHHHHhhhHHHHHHHHhhccccC-chh
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS----NV---HPYGWRLSLAIAGVPALFLCVGSMSICE-TPT 225 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~----~~---~~~~wr~~f~~~~~~~~~~~~~~~~~~e-sp~ 225 (515)
..++.|++|+++|++++++.....++|..+++.+...+. +. ...|||+.|++.+++.++..+..+++++ .|+
T Consensus 145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~ 224 (476)
T PLN00028 145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD 224 (476)
T ss_pred HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 668899999999999999998777777777665554432 11 1148999999999988877666655443 332
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
. +.++.++ +.+.++.+..+.+++..+.+.++.+.+..+........+..+.|
T Consensus 225 ~-----~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 225 G-----NYRELKK-----------------------SGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIA 276 (476)
T ss_pred C-----chhhHHh-----------------------cCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 0 0000000 00000011111122112223344444444444444455666778
Q ss_pred HHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh----HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 035636 306 VLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA----LLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380 (515)
Q Consensus 306 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (515)
.++.+ .|++..+++....+..++.++++++.|+++||++||+ ..........+..+.+..... ..
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~----------~~ 346 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR----------AN 346 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc----------cc
Confidence 77754 5999999999999999999999999999999998652 111111111111111111110 11
Q ss_pred hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 035636 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVV 460 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (515)
+.+.....++++..+..... +..+.+..+..| +.+|++.|+.+..+.+|++++|.+.+ ..+..++...+.+.++..+
T Consensus 347 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~ 423 (476)
T PLN00028 347 SLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMII 423 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHH
Confidence 12222222333333322221 233445556554 78999999998888888888877654 1112234333433343444
Q ss_pred HHHHHHhccc
Q 035636 461 MGLFAMFLLP 470 (515)
Q Consensus 461 ~~~~~~~~~~ 470 (515)
++.++.++.+
T Consensus 424 i~~~~~~~~~ 433 (476)
T PLN00028 424 ACTLPVAFIH 433 (476)
T ss_pred HHHHHHHhee
Confidence 4444444444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=271.26 Aligned_cols=353 Identities=14% Similarity=0.112 Sum_probs=240.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLIL-GRLALGIGVGFANQA 152 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~ 152 (515)
+|++..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|++.|++.+...+.
T Consensus 49 ~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~ 128 (455)
T TIGR00892 49 FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQP 128 (455)
T ss_pred hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhH
Confidence 3999999999999999999999999999999999999999999999999999999999998875 579999999887777
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCC
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGR 232 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 232 (515)
..+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+. .|||+.|++.+++.++..+..+++.+.+... .+.+
T Consensus 129 ~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 204 (455)
T TIGR00892 129 SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSK 204 (455)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCCCCccc-cccc
Confidence 8888899996 6799999999999999999999999988654 6899999999988776655444433222100 0000
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcC
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVG 312 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (515)
.++. +.....++.++. . .....++..+..+ .+.+ +++.++...+..+....+......+.|.+.++.|
T Consensus 205 ~~~~----~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g 272 (455)
T TIGR00892 205 SKSK----EGLPPDGSTKKL-S--KKSTAEKINRFLD-FSLF----THRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKG 272 (455)
T ss_pred cccc----ccCCCCCccccc-c--ccchhhhhhhhcc-hHHh----cCchHHHHHHHHHHHHHHccchHHHHHHHHHHcC
Confidence 0000 000000000000 0 0000000000000 1222 2344555555555555555666778888888889
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhcc--CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKA--GRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
++..+++...++.+++.++++++.+++.||. ++++...........+...+.... ..+.+..++...
T Consensus 273 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~~~~~~~i~~~ 341 (455)
T TIGR00892 273 VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----------AGDYTGLVIYCI 341 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----------hchHHHHHHHHH
Confidence 9999999999999999999999999999974 334333332222221211111111 112233344444
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHH
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFF 454 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 454 (515)
+.+.+.+.. .+....++.|.+|++.++++.|+.+....+|.+++|.+.|.+.+..+ +...+..
T Consensus 342 ~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 342 FFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred HHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 444444333 34456667799999999999999999999999999999999998875 4433333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=260.94 Aligned_cols=372 Identities=13% Similarity=0.096 Sum_probs=269.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhh
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVA 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~ 99 (515)
+++.+.....+.++.+...++...+.+. +|.+.+++ |+|..+.++..+.+.+++.+++++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF-----------------NAGAEWVPTSMTAYLAGGMFLQWLL 68 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777776665543 45666666 8999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHH
Q 035636 100 SRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITI 179 (515)
Q Consensus 100 g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (515)
|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+
T Consensus 69 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
T PRK15402 69 GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL 148 (406)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999988899
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHH
Q 035636 180 GIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVH 258 (515)
Q Consensus 180 G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
|..++|.+++.+.+. .+||+.|++.++..++..+.. ...||+++.. ++..+ ..+.
T Consensus 149 ~~~~g~~i~~~l~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------~~~~-- 204 (406)
T PRK15402 149 APLLGPLVGAALIHV--LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-----------------LKEL-- 204 (406)
T ss_pred HHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-----------------HHHH--
Confidence 999999999888654 689999999888877765544 3467654311 00000 0000
Q ss_pred HHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHH
Q 035636 259 ACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSV 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.++++..+++ +.++...+..+...........+.|.++. ..|+++.+.+.......++.+++.++.+
T Consensus 205 --------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 272 (406)
T PRK15402 205 --------GRDYKLVLKN----RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLA 272 (406)
T ss_pred --------HHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233332 33444444433333333445556677764 4689988888888878888999999999
Q ss_pred HhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhh
Q 035636 338 YAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETR 417 (515)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (515)
++.||+++|+.+..+.....++..++...... .....++......+.+.+.+.... ...... ...+++++
T Consensus 273 ~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~-~~~~~~~~ 342 (406)
T PRK15402 273 RLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANA-GLYRLT-LFSSDVSK 342 (406)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhh-hHHHHH-hhhccccc
Confidence 99999999998888877776666665543210 112223334444445444443322 222332 23344889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 035636 418 TAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAA 456 (515)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (515)
|++.++.+....++..+++.+.+.+.+..+...+....+
T Consensus 343 g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 381 (406)
T PRK15402 343 GTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNL 381 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 999999999999999999999999988877544443333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=268.54 Aligned_cols=372 Identities=13% Similarity=0.069 Sum_probs=247.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA----FHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999998887764 467788899999999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHh-hccccCchhhHHh
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVG-SMSICETPTSLIE 229 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~ 229 (515)
+.....+.|++|+++|++++++.+.+.++|..+++.+.+..... ..+||..|++.++++++..+. .+++||+|+....
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW-FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 98999999999999999999999999999999998876654321 158999999998887775544 4557887653210
Q ss_pred hCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhc-ccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 035636 230 RGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLM-KRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF 308 (515)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (515)
+ +.++. +. +...+. . ++.++ +.+.++.+ +...+++.++...+..++.....+.+..|.|.++
T Consensus 216 ~-~~~~~-------~~--~~~~~~---~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 278 (438)
T TIGR00712 216 P-PIEEY-------RN--DYPDDY---N---EKAEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYL 278 (438)
T ss_pred C-Cchhc-------cc--cccccc---c---ccccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 00000 00 000000 0 00000 00111111 1122334555555555555555667778999999
Q ss_pred HHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035636 309 QTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVV 387 (515)
Q Consensus 309 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (515)
++. |+++.++++...+..+.+++++++.+++.||+++++....+.....+.......... . +....+....
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~ 350 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM---N-----PAGNPLVDMI 350 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh---c-----CCCchHHHHH
Confidence 874 999999999999999999999999999999996443222222222221111111110 0 1111222222
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhh-HHHHHHHHHHHHHH
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT-FLVAQAFLSMLCNMKAGIF-FFFAAWIVVMGLFA 465 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 465 (515)
.....+.+. .+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.+..|+... ....++.++..+..
T Consensus 351 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 429 (438)
T TIGR00712 351 CMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 429 (438)
T ss_pred HHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 222222211 11111112345699999999999999999988875 6899999999998885544 34444444555555
Q ss_pred HhccccCC
Q 035636 466 MFLLPETK 473 (515)
Q Consensus 466 ~~~~~~~~ 473 (515)
....+|.|
T Consensus 430 ~~~~~~~~ 437 (438)
T TIGR00712 430 IVVMIGEK 437 (438)
T ss_pred HHHHhhcc
Confidence 55555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.27 Aligned_cols=356 Identities=15% Similarity=0.071 Sum_probs=260.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA-----AFHISMLILGRLALGIGVGFA 149 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~ 149 (515)
+.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..++ .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988887777665542 567889999999999999988
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHh
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIE 229 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~ 229 (515)
.+...+++.|++|+++|+++.++.....++|..+||.+++.+.+. .+|++.|++.++..++..+..+.+|++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPLLRLPALPPPP-- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--
Confidence 899999999999999999999999999999999999999988654 5799999988887777666666677754311
Q ss_pred hCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH
Q 035636 230 RGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ 309 (515)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (515)
+++.+. .++. ++.++..+++ +.+....+..+... .......+.|.+.+
T Consensus 204 ~~~~~~-----------------~~~~----------~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~p~~~~ 251 (417)
T PRK10489 204 QPREHP-----------------LRSL----------LAGFRFLLAS----PVVGGIALLGGLLT-MASAVRVLYPALAD 251 (417)
T ss_pred cccccc-----------------hHHH----------HHHHHHHHcC----hHHHHHHHHHHHHH-HHHhHHHhhHHHHH
Confidence 000000 0000 0012222222 22222222222222 13455667888888
Q ss_pred H-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 035636 310 T-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVL 388 (515)
Q Consensus 310 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (515)
+ .|.++...+.......++.+++.++.+++.||.++++.+..+..+.+++.+++... .+.+...+.
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 318 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVLC 318 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHHHHH
Confidence 7 69999999999999999999999999999999777777777666665555444321 122233333
Q ss_pred HHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHh
Q 035636 389 VCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA-GIFFFFAAWIVVMGLFAMF 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (515)
.++++.+.+. ..+....++.|..|++.||++.|+.+....+|..+++.+.|.+.+..+. ..+...+++.++.+++...
T Consensus 319 ~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 319 LALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3334433322 2334456778999999999999999999999999999999999998884 4555566666666677767
Q ss_pred ccccCCCCChHhh
Q 035636 468 LLPETKGVPVDAV 480 (515)
Q Consensus 468 ~~~~~~~~~~~~~ 480 (515)
..++.++++.+|.
T Consensus 398 ~~~~~~~~~~~~~ 410 (417)
T PRK10489 398 VLGELRRFRQTPP 410 (417)
T ss_pred hcccccccccccc
Confidence 7777777665555
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=256.46 Aligned_cols=333 Identities=12% Similarity=0.108 Sum_probs=235.7
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h-----hhhhHHHHHHHHHHHh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS---A-----AFHISMLILGRLALGI 144 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~-----~~~~~~l~~~r~l~G~ 144 (515)
++|+|..+.|++.+++.++..++++++|+++||+|||+++..+.++..++.+... + .++++.++++|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999888777654332 1 3578999999999999
Q ss_pred hhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCch
Q 035636 145 GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETP 224 (515)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 224 (515)
+.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+.+. .|||..+.+..+..++........||.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH--FGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999988554 6899887766555444333222233322
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH
Q 035636 225 TSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
+. +++ +.+.++..+... ++.. ..+...........+.
T Consensus 203 ~~---~~~----------------------------------~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~~~~~~ 239 (392)
T PRK12382 203 AH---AGE----------------------------------RPSLWSVVGLIW-KPGL-----GLALQGVGFAVIGTFV 239 (392)
T ss_pred CC---ccc----------------------------------CchHHHHHHHHH-HhHH-----HHHHHHHHHhHHHHHH
Confidence 10 000 001111111111 1111 1111222334556677
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHH
Q 035636 305 PVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAII 384 (515)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (515)
|.++++.|++. .+......+++.++++++.+++.||+++|+.+..+..+..++..++... + +.+.
T Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~ 304 (392)
T PRK12382 240 SLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------P-TAWV 304 (392)
T ss_pred HHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------c-cHHH
Confidence 77777776653 4556667778889999999999999999998888777766665544331 1 2233
Q ss_pred HHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 035636 385 VVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLF 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (515)
......+.+.+.+.. .+.......|.+|+++|+++.|+.+....++..++|.+.|.+.+..++...+...+...+.+.+
T Consensus 305 ~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 305 ALAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 333344444444332 2333455568899999999999999999999999999999999998866555555444444444
Q ss_pred HH
Q 035636 465 AM 466 (515)
Q Consensus 465 ~~ 466 (515)
..
T Consensus 384 ~~ 385 (392)
T PRK12382 384 VT 385 (392)
T ss_pred HH
Confidence 33
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=267.33 Aligned_cols=383 Identities=16% Similarity=0.174 Sum_probs=275.3
Q ss_pred HHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 035636 27 VIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~ 106 (515)
...++++.++..+|....+.. .|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 64 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDL-----------------GSSLSQVQWVITSYMLANAISIPLTGWLAKRF 64 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-----------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445567788888888776643 46666665 88999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHH
Q 035636 107 GRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANM 186 (515)
Q Consensus 107 Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 186 (515)
|||+++..+.++.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.
T Consensus 65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCchHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCChHHHHHHH--------H-HH-hC-CCcc-hH-H
Q 035636 187 VNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM-SICETPTSLIERGRLEEGRVVL--------Q-RI-RG-VANV-DN-E 252 (515)
Q Consensus 187 l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~--------~-~~-~~-~~~~-~~-~ 252 (515)
+++.+.+. .+||+.|++.++++++..+... +.||+++. .+++.+...... . .. .+ ..+. +. +
T Consensus 145 ~~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 145 LGGWIIEN--YHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred cHhHhccC--cCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 99998653 7899999998888776655443 36664431 111111111000 0 00 01 1111 00 0
Q ss_pred HHHH--------H--HHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHH
Q 035636 253 FDSI--------V--HACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLS 321 (515)
Q Consensus 253 ~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 321 (515)
.... . ...+.+++++....+.+++ +.++...+..+......+....+.|.++++ .|+++.+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~ 296 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKY----RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLH 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0000 0 0001111111111223333 333344444444555566677788988876 49999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccc
Q 035636 322 AVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWG 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
..+..++.+++.++.+++.||++||+.+..+..+.+++..++..... +....+.......+.+.+.+....
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~g~~~~~~ 367 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---------PDTPFLAIALPQFIRGFGMGCFFM 367 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877776666655542110 112223333334445555444433
Q ss_pred cchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 402 PLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+.. ....+..|+++++++.|+.+....+|+.+++.+.+.+.++.
T Consensus 368 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 368 PLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 33457789999999999999999999999999999988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=250.53 Aligned_cols=346 Identities=14% Similarity=0.088 Sum_probs=245.0
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-----FHISMLILGRLALGIGVG 147 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~ 147 (515)
++|+|..|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.++..+++ ++++.+++.|++.|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 469999999999999999999999999999999999999999999999999999987 8999999999999998 7
Q ss_pred hhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhh-----cc-----------CCCchHHHHHhhhHHHH
Q 035636 148 FANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS-----NV-----------HPYGWRLSLAIAGVPAL 211 (515)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-----~~-----------~~~~wr~~f~~~~~~~~ 211 (515)
..++.....+++|+|+++||+++++.....++|..+++++...+. .. ...+||..+++..++.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 788999999999999999999999997666677665555543322 10 12458888888888777
Q ss_pred HHHHhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHH
Q 035636 212 FLCVGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQV 290 (515)
Q Consensus 212 ~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (515)
+..++.++ .++.|. .+.+ .+...+.+| ++..|.+.+.+
T Consensus 223 v~~i~~~~~~~~~~~---~~~~----------------------------------~~~~~~vlk----~~~~Wllslly 261 (462)
T PRK15034 223 IATIAAWSGMNDIAS---SRAS----------------------------------IADQLPVLQ----RLHLWLLSLLY 261 (462)
T ss_pred HHHHHHHHhCCCccc---cccC----------------------------------HHHHHHHhC----CCchhHHHHHH
Confidence 76665554 333221 0000 011222333 35578888888
Q ss_pred HHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHh
Q 035636 291 FQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIW 370 (515)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (515)
++.+..+..+..+.|++.++ .++.........+..+...+.++++|+++||+|+++.+..+...+.+....+.....
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp-- 338 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP-- 338 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 88888888899999999866 343333333344556788899999999999999999998888776666544332211
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc---------------------hhhhhHHHHHHHHHH
Q 035636 371 LKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL---------------------ETRTAGFAFAVSTNM 429 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~~~~~~~~~ 429 (515)
.. .....+.....+.......+.+..++ +-++.+.+|+ ++.|.+.|+....+.
T Consensus 339 ---~~--~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~ 412 (462)
T PRK15034 339 ---GT--GSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGA 412 (462)
T ss_pred ---cc--cccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHH
Confidence 00 01122333333333333333343333 4445566663 257889999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-ch-hhHHHHHHHHHHHHHHHhcc
Q 035636 430 LFTFLVAQAFLSMLCNMK-AG-IFFFFAAWIVVMGLFAMFLL 469 (515)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 469 (515)
+|+++.|.++|...+..| +. .++.+.+..+++.++.++..
T Consensus 413 ~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 413 VGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred cccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877 33 34444444455555555444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=262.54 Aligned_cols=380 Identities=14% Similarity=0.149 Sum_probs=268.2
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr 108 (515)
+++++.++..++...+++ .+|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNT--ALPSMAQSL-----------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHhHHHHHH--HHHHHHHHh-----------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344566777777766554 346666665 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 035636 109 RPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVN 188 (515)
Q Consensus 109 r~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 188 (515)
|+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHH---------HhCCCc--chH-HHHH
Q 035636 189 YAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQR---------IRGVAN--VDN-EFDS 255 (515)
Q Consensus 189 ~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~-~~~~ 255 (515)
+.+.+. .+||+.|++..+..++..+.... .|+.+. .+.+.+........ ..+... ... ....
T Consensus 155 g~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 GLLVEY--ASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred HHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 998654 68999999988776665554433 444332 11122211110000 001000 000 0000
Q ss_pred --------H---HHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHH
Q 035636 256 --------I---VHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAV 323 (515)
Q Consensus 256 --------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 323 (515)
. ..+++..+++..+. +++++ +.+....+..++..........+.|++++. .|.++.+.++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSL-KLFRT----RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCH-HHhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 00001111111111 23332 334444444455445556667788988875 6999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccc
Q 035636 324 ITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPL 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
...++.+++.++.+++.||+++|+.+..+..+..+...++.... .....+.......+.+.+.+.... .
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~-~ 373 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFS-S 373 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHH-H
Confidence 98899999999999999999999999888777766655544321 111122222223333333333333 3
Q ss_pred hhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035636 404 GWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 448 (515)
...+..+..|++.++.+.|+.++...+|..+++.+.|.+.+..++
T Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556889999999999999999999999999999998887654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=250.81 Aligned_cols=355 Identities=12% Similarity=0.105 Sum_probs=249.9
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr 108 (515)
.+.++.++.+.+.+..++. +|.+.+++ |.|..+.|++.+.+.++..+++++.|+++||+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~--lp~~~~~~-----------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTL--VPLWLAQE-----------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHHhhhhHHHH--HHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445667777777766544 35666655 8899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 035636 109 RPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVN 188 (515)
Q Consensus 109 r~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 188 (515)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+.+.+..++++|++++++.+.+.++|..+|+.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHhhhHHHHHHH-HhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccC
Q 035636 189 YAMSNVHPYGWRLSLAIAGVPALFLC-VGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVT 267 (515)
Q Consensus 189 ~~l~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+.+.+. ..|+.. +..+....... +.....++++. + ++++
T Consensus 151 ~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~---------------------------------~~~~ 190 (381)
T PRK03633 151 SKVSTE--LMSVLP-WVTGLVLAAILPLLFTRILNQQA----E---------------------------------NHDS 190 (381)
T ss_pred hccccc--ccchHH-HHHHHHHHHHHHHHHhcccCCCC----C---------------------------------CCCC
Confidence 988553 122222 22222221111 11111222110 0 0001
Q ss_pred cchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh
Q 035636 268 KPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (515)
.+.++.++++. ++......+.....+.....+.|.+.++.|.+..+.+.......++.+++++..+++.||+++|+
T Consensus 191 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 191 TSIWPMLKLRQ----ARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred CCHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 12233333221 22222222222223445556789888888999999999889999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH
Q 035636 348 LLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST 427 (515)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 427 (515)
.+..+.....++...+.. . .. ......+.+.+.. ...|.......|..|++.++...+..+..
T Consensus 267 ~l~~~~~~~~~~~~~~~~--~-----------~~---~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (381)
T PRK03633 267 VLRVQVFVVILGSIAMLS--Q-----------AA---MAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLS 329 (381)
T ss_pred HHHHHHHHHHHHHHHHhh--h-----------HH---HHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 888776666655443321 0 11 1111222222222 23455566667888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 035636 428 NMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGL 463 (515)
Q Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (515)
..+|..++|.+.|.+.|+.++...+...+...+...
T Consensus 330 ~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 330 YTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 999999999999999999885544444433333333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=255.74 Aligned_cols=324 Identities=14% Similarity=0.183 Sum_probs=239.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCCh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRL 233 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~ 233 (515)
+++.|++|+++|+++.++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+.. ++.||+++.. ++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 192 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW--LSWHAIFAFLSLAGILLSALIFFILPETLPYE-ARIQI 192 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-ccCCH
Confidence 9999999999999999999999999999999999988654 689999999888777665554 3466654310 00000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcC
Q 035636 234 EEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVG 312 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 312 (515)
++ ..+.+++.+++ +.++...+..............+.|.+++ +.|
T Consensus 193 ~~------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (385)
T TIGR00710 193 ST------------------------------YFETFLLLLKS----KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMG 238 (385)
T ss_pred HH------------------------------HHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcC
Confidence 00 00112223332 22333333333334444556667787775 569
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVF 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++...... .............+.
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 310 (385)
T TIGR00710 239 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFV 310 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887777666665555443210 001122222233333
Q ss_pred HHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 393 VMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
+.+.+.. .+.......|..| +.++++.++.+.....++.+.+++.+.+.+.
T Consensus 311 g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 311 GIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3433333 2344455567777 5789999999999888777777777744433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=256.10 Aligned_cols=327 Identities=16% Similarity=0.090 Sum_probs=247.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF-----HISMLILGRLALGIGVGFA 149 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 149 (515)
+.+..+.+++.+++.++..+++++.|+++||+|||+++..+..+.+++.++..+.+ +++.+++.|++.|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999998888887 9999999999999999999
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccc--cCchhhH
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSI--CETPTSL 227 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~esp~~~ 227 (515)
.+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+||+.|++.++..++..+....+ ||+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT--LGIKWAIWVDAVGFAISALLIVSVRIPELAAS- 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-
Confidence 999999999999999999999999999999999999999998654 689999999887766655444333 332210
Q ss_pred HhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHH-HhHHH
Q 035636 228 IERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIM-FYAPV 306 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 306 (515)
++++.++ +..+ +.++.++..+++ +.++...+..+.......... .+.|+
T Consensus 187 -~~~~~~~---------------~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (365)
T TIGR00900 187 -EIQALSN---------------AVLR----------DTREGIKFVLKN----PLLRTLLLLALLFNLVFAPAIVALFPY 236 (365)
T ss_pred -cccccch---------------hHHH----------HHHhHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0000000 0000 001112333332 334434343333333334444 77888
Q ss_pred HHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 035636 307 LFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIV 385 (515)
Q Consensus 307 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (515)
+.++ .|.+..+.+.......++.+++.++.+++.||.+||+.+..+....+++...+... ++ +.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~ 304 (365)
T TIGR00900 237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------PP-NFPLF 304 (365)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------ch-hHHHH
Confidence 8876 69999999999999999999999999999999999998887766655555444432 11 23333
Q ss_pred HHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 386 VVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
.+..++.+.+.+.. .+....+..|..|++.|+++.|+.+....++..++|.+.|.+.|..|
T Consensus 305 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 305 LVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444445444433 34556777899999999999999999999999999999999988754
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=264.55 Aligned_cols=347 Identities=14% Similarity=0.117 Sum_probs=242.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...
T Consensus 26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCC
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIAN-MVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGR 232 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~ 232 (515)
+++.|++|+++|++++++.+.+..+|..+++ .++..+... .+||+.|++.+++.++..+.. .+.+|+|+....++.
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL--YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA 183 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc
Confidence 9999999999999999999999999999999 466666433 689999999888776654444 457776542111100
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-c
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-V 311 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 311 (515)
.++. .++.+. ..++++++........+...+++.++...+..+...........+.|.++++ .
T Consensus 184 ~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (379)
T TIGR00881 184 EEMP---------NEEPDG-------DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEK 247 (379)
T ss_pred ccCc---------cccccc-------ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 000000 0000000001111111112223445555555555555566777888888765 5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCc-hhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGR-RALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|+++.+.+.......++.+++.++.+++.||..+ |+.... ..........+..... . .....+.......
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~ 318 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYWL---N-----PAANPLMDLICLF 318 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHhc---C-----cchhHHHHHHHHH
Confidence 9999999999999999999999999999998643 333222 1111111111111110 0 1112222222222
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG 449 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 449 (515)
+.+.. ..+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.+..|+.
T Consensus 319 ~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 319 ALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 22222 22222334556789999999999999999999999999999999999988754
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=258.18 Aligned_cols=356 Identities=15% Similarity=0.212 Sum_probs=268.4
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF--HISMLILGRLALGIGVGF 148 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 148 (515)
+.++++|..+.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred hhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhH
Q 035636 149 ANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSL 227 (515)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~ 227 (515)
.+|+...+.++|.|++||++..++..++..+|.+++.++++++.+. ..||+.+|++.++.+++..+++++ ..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 9999999999999999999999999999999999999999999875 379999999999999998888755 6777752
Q ss_pred HhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHH---hhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH
Q 035636 228 IERGRLEEGRVVLQRIRGVANVDNEFDSIVHACE---MANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
++...+ +|.+.+.+... .+++.+.||+++++. +.+|...+..+....++..+..|.
T Consensus 223 --h~~is~---------------~El~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 223 --HPNISE---------------KELKYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred --CCCCCH---------------HHHHHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221111 11222222111 111146788888876 779999999999999999999999
Q ss_pred HHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCch--------hH-HHhhhHHHHHHHHHHHHHHHHhcCCC
Q 035636 305 PVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR--------AL-LLEAVVQMFITQSIIGIILAIWLKPT 374 (515)
Q Consensus 305 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (515)
|.|+++. |++..+.|+..++..+...+..+++|.++||+.+| |. -.++....++.++.+.+.
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-------- 353 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-------- 353 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec--------
Confidence 9999886 99999999999999999999999999999998652 11 122333333333333332
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhh
Q 035636 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM---KAGIF 451 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~ 451 (515)
+....+..++++.+.....+.. ............+++.+..+|+.+....+.++++|.+.+.+.... .|...
T Consensus 354 ---~~~~~~~a~~~l~~~~~~~g~~--~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~V 428 (466)
T KOG2532|consen 354 ---SDEHRLLAVILLTIAIGLSGFN--ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIV 428 (466)
T ss_pred ---CCCcchHHHHHHHHHHHHcccc--hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHH
Confidence 2222222233222222222222 122222222214578899999999999999999999999998422 24444
Q ss_pred -HHHHHHHHHHH
Q 035636 452 -FFFAAWIVVMG 462 (515)
Q Consensus 452 -~~~~~~~~~~~ 462 (515)
++.+++.++..
T Consensus 429 F~i~a~i~~~~~ 440 (466)
T KOG2532|consen 429 FLIAAGILIVGN 440 (466)
T ss_pred HHHHHHHHHHhc
Confidence 44444444444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=250.78 Aligned_cols=364 Identities=12% Similarity=0.107 Sum_probs=251.8
Q ss_pred HHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchH
Q 035636 31 AFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRP 110 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~ 110 (515)
.+..+....+...+.+ .+|.+.++| +.+..+.++..+++.+++.++++++|+++||+|||+
T Consensus 22 ~~~~~~~~~~~~~~~p--~l~~i~~~~-----------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~ 82 (413)
T PRK15403 22 ILYDFAAYLTTDLIQP--GIINVVRDF-----------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP 82 (413)
T ss_pred HHHHHHHHHHHHhhcc--CHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH
Confidence 3444545555555543 345666666 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 035636 111 TMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYA 190 (515)
Q Consensus 111 ~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 190 (515)
+++.+.++++++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||.+++.
T Consensus 83 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~ 162 (413)
T PRK15403 83 VLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAA 162 (413)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777788889999999999999999999999999999999998
Q ss_pred hhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcc
Q 035636 191 MSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKP 269 (515)
Q Consensus 191 l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
+.+. .|||+.|++.++..++..+.. +++||+++. +++..+... ..+.
T Consensus 163 l~~~--~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~---------------------------~~~~ 210 (413)
T PRK15403 163 LMHF--VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSAKS---------------------------VLRD 210 (413)
T ss_pred HHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCChHH---------------------------HHHH
Confidence 8653 689999999998877766543 457886531 100000000 0011
Q ss_pred hhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhH
Q 035636 270 FSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRAL 348 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 348 (515)
+++.++ ++.++...+..+........+..+.|.++++. |+++.+.++.......+.+++..+.+++.++..+++.
T Consensus 211 ~~~ll~----~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 211 FRNVFR----NRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHc----CHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 233333 35566665555555555666777788888765 8999999998888888888888888877655544444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHH
Q 035636 349 LLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTN 428 (515)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 428 (515)
.........++..++...... .....+......++++.+.+... |...... ..-....+|++.++.+...
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~~~ 356 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNMVI 356 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHHHH
Confidence 333333333333333221110 01112222344444444444432 2222211 1112224799999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 035636 429 MLFTFLVAQAFLSMLCNMKAGIFFFFAAWIV 459 (515)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (515)
..+...++...+++.+......+.....++.
T Consensus 357 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999999999998877754444444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.61 Aligned_cols=375 Identities=16% Similarity=0.193 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhh
Q 035636 21 VYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVAS 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g 100 (515)
...+..+.++++...+...|...+.... +.. +++||++++..|++++.+.+.+.+++|+.|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~--~~v-----------------~~~fni~~s~~Gll~~vf~v~~~i~sPl~g 89 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVL--KEV-----------------QTYFNISDSELGLLQTVFIVVFMIASPLFG 89 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhh--HHH-----------------HHhcCCCchhccchhHHHHHHHHHHHHHHH
Confidence 3344556677788888888887765432 333 455699999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHH
Q 035636 101 RVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180 (515)
Q Consensus 101 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (515)
+++|||+||+++.+|.+++.++.+.++++..||+++++|.+.|+|.+...+.++++++|.+|..+|++++++++.+.++|
T Consensus 90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG 169 (493)
T KOG1330|consen 90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG 169 (493)
T ss_pred HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHH
Q 035636 181 IFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHA 259 (515)
Q Consensus 181 ~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
..+|.+.+..+.+.. ..|||.|+..++++++..++.++ .+|++|- ..++.+. .+
T Consensus 170 sglG~vvgs~va~~~-~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~-------~~------------ 224 (493)
T KOG1330|consen 170 SGLGYVVGSVVASLT-FWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDG-------EN------------ 224 (493)
T ss_pred cceeEEeeeeeccCc-cceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccccc-------CC------------
Confidence 999999999987765 34999999999999987777655 5665431 1111000 00
Q ss_pred HHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH----cCCCChhHHHHHHHHHHHHHHHHhh
Q 035636 260 CEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT----VGFGSEASLLSAVITGLVNVFSTLV 335 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
+..+.....++++. ...+.+.+....+...........+.+|.|.+... .|++..+..++..+...++.+|.+.
T Consensus 225 -~~~~~~ts~~kDl~-~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~ 302 (493)
T KOG1330|consen 225 -KMVKPFTSVWKDLK-VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLF 302 (493)
T ss_pred -cCCCCccchHHHHH-HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhhee
Confidence 00001111122221 11122333333333333333445566666655533 3777788888888999999999999
Q ss_pred HHHhhhccC----chhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccC
Q 035636 336 SVYAVDKAG----RRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSET 411 (515)
Q Consensus 336 ~~~l~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (515)
+|.++||+. +-.......+.++.+......+......- .....+..++++.+........+.+.. -+..|+
T Consensus 303 Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~----~~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~v 377 (493)
T KOG1330|consen 303 GGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF----TSSSMIFGLILFLVGETISWFNWATNN-PIFLEV 377 (493)
T ss_pred hHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhccccccc-ceeeEe
Confidence 999999943 21222222222222211111111100000 122223223333222223333444443 444699
Q ss_pred CCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 035636 412 FPLETRTAGFAFAVSTNMLFTFL-VAQAFLSMLCNM 446 (515)
Q Consensus 412 ~p~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 446 (515)
+|++.|.++.++...+..+.+-. +|++.|.+.+..
T Consensus 378 V~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 378 VPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 99999999999998887765555 555999998875
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=248.42 Aligned_cols=342 Identities=16% Similarity=0.073 Sum_probs=234.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---h-hhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS---A-AFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|+|..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++++++. + .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999998877653 3 3578888999999999998888
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHH-HHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHH
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGI-FIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLI 228 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~ 228 (515)
+...+.+.+++|+++|++++++.+.+.++|. +++|.+++.+.+. .||+..++......++..++. ++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA--FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ- 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-
Confidence 8888889999999999999999999999997 6899998887543 576555444333333322222 2334322100
Q ss_pred hhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 035636 229 ERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF 308 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (515)
.+++.++ .++. ++.++..++ +|.++...+..++.....+....+.|.+.
T Consensus 201 ~~~~~~~-----------------~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (402)
T TIGR00897 201 HMQTREK-----------------FSEL----------GKAATILFT----NPNVLLGGMVRIINTIGLFGFAVFLPMFV 249 (402)
T ss_pred cccCCcc-----------------hhhH----------HHHHHHHHc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000 001222333 24455555555555566677888999999
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHH-hhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035636 309 QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLL-EAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVV 387 (515)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (515)
++.|++..+.+.......++.+++.++.|++.||++||+... .+.....++...+...... .....+...+
T Consensus 250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~ 321 (402)
T TIGR00897 250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVALI 321 (402)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHHH
Confidence 888999999888888899999999999999999999888664 2223333332222221110 0112223333
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVM 461 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (515)
...+.+.+... ..+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+...+++.++
T Consensus 322 ~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 322 IAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33334433332 23333 34456655 68999999999999999999999999999998854444333333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=246.50 Aligned_cols=323 Identities=14% Similarity=0.172 Sum_probs=238.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|+++.+.+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChH
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLE 234 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 234 (515)
+++.|++|++++++..+.......+|..++|.+++.+.+. .+||+.|++.++..++..+..++++|+++. +++ +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~ 190 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH--FGWQAIFATLFAITLLLILPTLRLKPSKKA---RKQ-S 190 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccc-c
Confidence 9999999999999999999999999999999999998654 689999999888877766666556655421 000 0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCC
Q 035636 235 EGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (515)
+ ++.++++.+++ +.++...+........+.....+.|.+.++.|++
T Consensus 191 ~------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s 236 (401)
T PRK11043 191 Q------------------------------DALTFKQLLKS----KTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYS 236 (401)
T ss_pred h------------------------------HHHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCC
Confidence 0 00112333332 2222222222222333455667788888888999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHH
Q 035636 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVM 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
..+.+.......++.+++.++.+++.||+++|+.........+++...+...... .....+.......+.+.
T Consensus 237 ~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 308 (401)
T PRK11043 237 PADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMAA 308 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHH
Confidence 9999988888888999999999999999999887765555554444333222110 11122223333333444
Q ss_pred hhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 395 GFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+.+.. .+.......+..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 309 ~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 309 ANGAI-YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHH-HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 43333 2344444456666 579999999999999999999999998877543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=254.56 Aligned_cols=324 Identities=21% Similarity=0.341 Sum_probs=241.2
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 72 NYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 72 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.++++|++.|++.+...+
T Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 104 (352)
T PF07690_consen 25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP 104 (352)
T ss_dssp CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence 44589999999999999999999999999999999999999999999999977777778888999999999999999999
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhh
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIER 230 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~ 230 (515)
...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+. .+||+.|++.+++.++..++. .+++++|+....+
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 182 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY--FGWRWAFLISAILSLIAAILFILFLPEPPPPRERE 182 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc--cccccccccccchhhhhhhhHhhhhhhcccccccc
Confidence 9999999999999999999999999999999999999999643 689999999999988877643 4455444321111
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCc-chhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHH-H
Q 035636 231 GRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTK-PFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVL-F 308 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (515)
++.++. ++++++.. .++..+++ +.++...+..+...........+.|.+ .
T Consensus 183 ~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (352)
T PF07690_consen 183 SPKESE------------------------SKKPKPLKPGFKSLFKN----PVLWILLIAFFLFFFVFSGFSFFLPLYLQ 234 (352)
T ss_dssp SSTTTT--------------------------HHHCCCH-CTHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccc------------------------ccccccccccccccccc----chhhhhhhhhhHHHHHHHHhhcccchhhh
Confidence 111100 00001111 12333322 323333344444444556688888887 4
Q ss_pred HHcCCC-ChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035636 309 QTVGFG-SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVV 387 (515)
Q Consensus 309 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (515)
+..|++ ..+.+....+..+..+++.++.+++.||+++++..........+....+..... .........
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 304 (352)
T PF07690_consen 235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSSPVWLII 304 (352)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHH
Confidence 566888 788898999999999999999999999999988777666666665555544322 112233333
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHH
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~ 436 (515)
...+.+.+.+.. .+....+..|..|++.+|++.|+.+...++++.++|
T Consensus 305 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444444433 455677788999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=252.54 Aligned_cols=338 Identities=19% Similarity=0.242 Sum_probs=238.0
Q ss_pred CCcchHHHHHHH-----HHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHH
Q 035636 76 YDNQFLQLFTSC-----LYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHIS--------MLILGRLAL 142 (515)
Q Consensus 76 ~s~~~~g~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~--------~l~~~r~l~ 142 (515)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 344555554443 3344457899999999999999999999999999999999998875 488899999
Q ss_pred HhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc------cCCCchHHHHHhhhHHHHHHHHh
Q 035636 143 GIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSN------VHPYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 143 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~------~~~~~wr~~f~~~~~~~~~~~~~ 216 (515)
|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.. ....+||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998776532 12368999999888777766655
Q ss_pred hccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhh
Q 035636 217 SMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTG 296 (515)
Q Consensus 217 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
....||+|++..+++ ++++.+.+.++.+++.. +.++......+.....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHR--KPFLLGLGLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhch--HHHHHHHHHHHHHHHH
Confidence 555677654221110 00111223344443321 2234444444444555
Q ss_pred HHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 297 INAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 297 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
......+.|.+.+ +.|.+..+.+.......++.+++.++.+++.||++||+.+.....+..+....+.....
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------- 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 6667778888884 56899999999999999999999999999999999999776554443333211111110
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcc-chhhHH
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAV-STNMLFTFLVAQAFLSMLCNMK-AGIFFF 453 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~~~ 453 (515)
.....+......++.+.+.+.. .+....+..|.+|++.|+++.++.+ ....+|..++|.+.|.+.+..+ +.....
T Consensus 308 --~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 308 --DSGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred --cCCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 1122233333333444433333 3445677789999999999999854 4556788899999999999887 444433
Q ss_pred HH
Q 035636 454 FA 455 (515)
Q Consensus 454 ~~ 455 (515)
..
T Consensus 385 ~~ 386 (394)
T TIGR00883 385 YL 386 (394)
T ss_pred HH
Confidence 33
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-30 Score=248.23 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=234.0
Q ss_pred cCCcch-----HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 035636 75 KYDNQF-----LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFA 149 (515)
Q Consensus 75 ~~s~~~-----~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 149 (515)
|++..+ .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ .
T Consensus 45 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 123 (408)
T PRK09874 45 GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F 123 (408)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h
Confidence 555443 5899999999999999999999999999999999999999999999999999999999999999865 5
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc-cccCchhhHH
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM-SICETPTSLI 228 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~ 228 (515)
.+....++.|++|+++|+++.++...+..+|.+++|.+++.+.+. .+||+.|++.+++.++..+... +++|+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS--YGLRPVFFITASVLFLCFLVTLFCIRENFQPV- 200 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhccCcccc-
Confidence 677788899999999999999999999999999999999988654 6899999998888776655443 356543210
Q ss_pred hhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 035636 229 ERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF 308 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (515)
++++..+ . +...+.+++ ++.....................+.+.+.
T Consensus 201 ~~~~~~~--------------------~-----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T PRK09874 201 SKKEMLH--------------------M-----------REVVTSLKN---PKLVLSLFVTTLIIQVATGSIAPILTLYV 246 (408)
T ss_pred cchhhhH--------------------H-----------HHHHHhCcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 000111111 12222222222222222334445566666
Q ss_pred HHcCCCCh----hHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHH
Q 035636 309 QTVGFGSE----ASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAII 384 (515)
Q Consensus 309 ~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (515)
.+.+.+.. ..+....+.+++.+++.+..+++.||++||+.+..+.....++.+..... ...+.
T Consensus 247 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 313 (408)
T PRK09874 247 RELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQ 313 (408)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHH
Confidence 65432222 23455566678888999999999999999998887776655554443321 12233
Q ss_pred HHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 035636 385 VVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLF 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (515)
..+...+.+.+.+.. .+.......+..|++.+|+.+++.+....+|..++|.+.|.+.+..++...+...++..+.+.+
T Consensus 314 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 392 (408)
T PRK09874 314 LGILRFLLGAADGAL-LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV 392 (408)
T ss_pred HHHHHHHHHhhhHhh-HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 333333444443332 3344455567888899999999999999999999999999999988865555544444443333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-30 Score=245.45 Aligned_cols=342 Identities=13% Similarity=0.117 Sum_probs=240.5
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQI-ASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
++|.|..+.|++.+++.+...+.+++.|+++||+||||.++. +..+..++.+++++++|++.+++.|++.|.+.+...|
T Consensus 27 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p 106 (375)
T TIGR00899 27 EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANP 106 (375)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHH
Confidence 458999999999999999999999999999999999887654 5666677788889999999999999999988888888
Q ss_pred hhhhhhhhccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHH
Q 035636 152 AVPLFLSELAPAKIRGAL--NISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLI 228 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~ 228 (515)
...+++.|+.|+++|++. .+....+.++|.++++.+++.+.+. .+||+.|++.++..++..+.. +++||+|+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T TIGR00899 107 QLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG--FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP 184 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc
Confidence 888999999888777654 5788888999999999999998654 689999999988877666554 44788764210
Q ss_pred hhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 035636 229 ERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF 308 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (515)
++. + +.+.++.++++ .++......+...........+.|.++
T Consensus 185 ~~~---~-------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T TIGR00899 185 GAL---T-------------------------------RLEVRGLLASR----DTRLLFVACTLMWGCNILYIINMPLLI 226 (375)
T ss_pred ccc---C-------------------------------cchhhhhhcCc----chHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 000 0 00111122221 122222222222222334455667666
Q ss_pred H-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035636 309 Q-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVV 387 (515)
Q Consensus 309 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (515)
+ +.|.++.+.+.......+..+++.++.+++.||++||+.+..+.....+....+... .+.+....
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 293 (375)
T TIGR00899 227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLM 293 (375)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 4 569999888888877777888899999999999999998877665544433322221 12233333
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMF 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (515)
...+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+...++..+.+.+...
T Consensus 294 ~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 294 LQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 333333333322 24445666788875 5679999999999999999999999999988866655555555555555544
Q ss_pred cc
Q 035636 468 LL 469 (515)
Q Consensus 468 ~~ 469 (515)
.+
T Consensus 372 ~~ 373 (375)
T TIGR00899 372 LI 373 (375)
T ss_pred ee
Confidence 44
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=246.93 Aligned_cols=352 Identities=12% Similarity=0.110 Sum_probs=242.9
Q ss_pred HHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 035636 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSK 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr 105 (515)
.+...++..+..+++....+.. .|.+.+++ |+|+.+.|++.+.+.+++.+++++.|+++||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~~-----------------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr 87 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDIL--LPQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667776555433 35665555 9999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHH
Q 035636 106 QGRRPTMQIASFFFLVGVVLT---SAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182 (515)
Q Consensus 106 ~Grr~~~~~~~~l~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 182 (515)
+|||+++..+..+++++++++ .++++++.++++|+++|+|.+...+..+.++.|+.|+++|.+.+++.+..+.+|..
T Consensus 88 ~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~ 167 (438)
T PRK10133 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 46889999999999999999999999999999988777777789999999999999
Q ss_pred HHHHHHHHhhccC------------------C------CchHHHHHhhh-HHHHHHHHh-hccccCchhhHHhhCChHHH
Q 035636 183 IANMVNYAMSNVH------------------P------YGWRLSLAIAG-VPALFLCVG-SMSICETPTSLIERGRLEEG 236 (515)
Q Consensus 183 i~~~l~~~l~~~~------------------~------~~wr~~f~~~~-~~~~~~~~~-~~~~~esp~~~~~~~~~~~~ 236 (515)
+++.++..+.... . .+||++|+... +..++..+. ....||.+. ++.+ ++
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---~~~~-~~- 242 (438)
T PRK10133 168 IAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---DNHS-DA- 242 (438)
T ss_pred HHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccc-cc-
Confidence 9999987653100 0 25666776433 333333322 222444221 0000 00
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH-HH-cCCC
Q 035636 237 RVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF-QT-VGFG 314 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~ 314 (515)
+......+.+++++. |.++...+..++..........|.+.++ ++ .|++
T Consensus 243 -------------------------~~~~~~~~~~~ll~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s 293 (438)
T PRK10133 243 -------------------------KQGSFSASLSRLARI----RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT 293 (438)
T ss_pred -------------------------cccchhhhHHHHHhC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 000001112333333 3233333333334444455556667664 44 5999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHH
Q 035636 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVM 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
+.+++.......++.++++++++++.||+++|+.+..+..+..+.+++.... +. . .....+.+.++
T Consensus 294 ~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~~--~-~~~~~~~l~gl 359 (438)
T PRK10133 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------GG--H-VGLIALTLCSA 359 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------CC--h-HHHHHHHHHHH
Confidence 9999999999999999999999999999999998887766665544433221 11 1 12333444555
Q ss_pred hhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 395 GFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+.+..+ |..+....+..|+ ..+.+.++.. ...+|+.++|++.|.+.+..|
T Consensus 360 g~~~i~-P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 360 FMSIQY-PTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHH-HHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 554443 5556666677775 4677888775 455788999999999999876
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=241.22 Aligned_cols=341 Identities=21% Similarity=0.306 Sum_probs=275.3
Q ss_pred HHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchH
Q 035636 31 AFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRP 110 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~ 110 (515)
.++.+...++.....+.. |.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+|||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~ 65 (352)
T cd06174 5 FLGFFLSGLDRGLLSPAL--PLLAEDL-----------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65 (352)
T ss_pred HHHHHHHHHhhhhhHhhH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch
Confidence 344555555655544332 4555444 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 035636 111 TMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYA 190 (515)
Q Consensus 111 ~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~ 190 (515)
.+..+..+..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcch
Q 035636 191 MSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPF 270 (515)
Q Consensus 191 l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (515)
+.+. .+||+.+++.++..++..+...+++
T Consensus 146 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 174 (352)
T cd06174 146 LAES--LGWRWLFLILAILGLLLALLLLFLL------------------------------------------------- 174 (352)
T ss_pred HHHH--hhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 8664 5799999998888777666544322
Q ss_pred hhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh-H
Q 035636 271 SKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA-L 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~-~ 348 (515)
+.++...+..+...........+.|.+.++. |.+..+.+.......++.+++.++.+++.||++||+ .
T Consensus 175 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (352)
T cd06174 175 ----------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244 (352)
T ss_pred ----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2244455555666666778888889888876 999999999999999999999999999999999999 8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHH
Q 035636 349 LLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTN 428 (515)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 428 (515)
+..+.....++...+.... +.+...+...+.+.+.+.. .+....+..|..|+++|++..|+.+...
T Consensus 245 ~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 245 LLIGLLLAALGLLLLALAP-------------SLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFG 310 (352)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 8888777777766665421 1333444444455544433 4566778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 035636 429 MLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (515)
.++..+++.+.+.+.+..++...+....+..+...+.
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998877655554444444444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=232.95 Aligned_cols=351 Identities=17% Similarity=0.180 Sum_probs=269.0
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHIS---MLILGRLALGIGVG 147 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~---~l~~~r~l~G~~~~ 147 (515)
++|+++|+.|.+++.++..+...+.-++.|.+.||||.|++..+++++..+-.+..+++.+.+ ++++++.+.|++ |
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-G 119 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-G 119 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-c
Confidence 456699999999999999999999999999999999999999999999999999999986555 999999999997 5
Q ss_pred hhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCc---hHHHHHhhhHHHHHHHHhhc-cccCc
Q 035636 148 FANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYG---WRLSLAIAGVPALFLCVGSM-SICET 223 (515)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~---wr~~f~~~~~~~~~~~~~~~-~~~es 223 (515)
..+.....++++|+||+++|.++|+.. ..++|..+...++..+... .+ ||....+..+..++..+..+ ...|.
T Consensus 120 asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 120 ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578889999999999999999999999 8888888888887777544 46 99998888888777655554 46666
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHh
Q 035636 224 PTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303 (515)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (515)
|......+.. . + ..++...+++..|.+.+.++..+.++..+..+
T Consensus 197 p~~r~~~~~~---------------------------------~-~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 197 PEHRASVKPQ---------------------------------L-P--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred hhhhcccccc---------------------------------c-h--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5421111000 0 0 11222333466888999999999999999999
Q ss_pred HHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhh
Q 035636 304 APVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEA 382 (515)
Q Consensus 304 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (515)
.|.++++. |.++.+++.......+.+.+.++++|+++||+|.+|.+......++++..++..... ......+.
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~------~~~~~~~~ 314 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT------GFGHGGSF 314 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc------ccccCcch
Confidence 99999764 999999999999999999999999999999999999998888888777777665321 00011233
Q ss_pred HHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-hhhHHHHHHHHH
Q 035636 383 IIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-A-GIFFFFAAWIVV 460 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 460 (515)
+.............+.+-. ..+-++...+| ++.|.+.|+...++.+|++.-|..++...+..+ + ..++++....++
T Consensus 315 ~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~ 392 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLV 392 (417)
T ss_pred HHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333333344444444433 33556667777 467899999999999999999999999999998 3 344455555555
Q ss_pred HHHHHHhcc
Q 035636 461 MGLFAMFLL 469 (515)
Q Consensus 461 ~~~~~~~~~ 469 (515)
+.++.+...
T Consensus 393 a~v~~~~~y 401 (417)
T COG2223 393 ALVLTWALY 401 (417)
T ss_pred HHHHHHHHH
Confidence 544444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=242.76 Aligned_cols=319 Identities=16% Similarity=0.210 Sum_probs=225.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.|..+.++..+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCCh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRL 233 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~ 233 (515)
+++.|++|+++|+++.++.+....+|.+++|.+++.+.+. .+||+.|++.++..++..+.. .++||+++.. +++.
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~ 189 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK--FPWQSLFYTMAAMGILVLLLSLFILKETRPAR--APAA 189 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCCc
Confidence 9999999999999999999999999999999999887543 689999999888777665544 4467654210 0000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcC
Q 035636 234 EEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVG 312 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 312 (515)
++ . .+..++.+++ +.++...+..............+.|.+++ +.|
T Consensus 190 ~~----------------~--------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (392)
T PRK10473 190 SS----------------K--------------PRENSESLLN----RFFLSRLVITTLSVTVILTFVNTSPVLLMEQMG 235 (392)
T ss_pred cc----------------h--------------HHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcC
Confidence 00 0 0001112222 22222222222222223334455566654 569
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVF 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.+.+......+++.+++.++.+++.||+++|+.+..+.....++.+++..... .+.......+.
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~ 302 (392)
T PRK10473 236 FSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------------HAVSLFGITLI 302 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887777666655554321 11222222233
Q ss_pred HHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 035636 393 VMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGI 450 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 450 (515)
..+.+.+.. . ....+..|.+.|+ |.......++..+++.+.+.+.+..++..
T Consensus 303 ~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 303 CAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 333333222 1 2223444544443 33444455677777777777777777543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=241.78 Aligned_cols=319 Identities=16% Similarity=0.170 Sum_probs=228.6
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|+|+.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+..
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 100 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVI 100 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGR 232 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~ 232 (515)
.+++.|++|+++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.+++.++..+.. ++.||+++.. +++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 176 (377)
T PRK11102 101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAILAAALVFFFIPETLPKE--RRQ 176 (377)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHhCCccCccc--ccC
Confidence 99999999999999999999999999999999999988654 689999999888877665544 4567654210 000
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-Hc
Q 035636 233 LEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TV 311 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (515)
..+. ++ ..+++++.+++ +..+...+..+....+......+.|.++. ..
T Consensus 177 ~~~~-------------~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (377)
T PRK11102 177 PFHL-------------RT--------------TIRNFASLFRH----KRVLGYMLASGFSFAGMFSFLTAGPFVYIELN 225 (377)
T ss_pred CCCh-------------HH--------------HHHHHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 0000 00 00112233332 22333334444444445555556666654 46
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCV 391 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+..... .+...+...+...+
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 296 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LDLGFWALVVGVAA 296 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999888777655444333322211 11122222222223
Q ss_pred HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHH-HHHHHHHHH
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM-LFTFLVAQA 438 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~ 438 (515)
+..+.... .+....+..|..| +.++++.++.+.... ++..+++.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 297 FVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222 2233344567776 788999998877654 445555544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=241.96 Aligned_cols=336 Identities=11% Similarity=0.058 Sum_probs=232.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+..+.+++.+.+.+++.++.+++|+++||+|||++++.+.++.++++++++++.+. ++.|+++|++.+...|...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999888887664 7899999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChH
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLE 234 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 234 (515)
+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...++..+....+||+|+....++ .+
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAALFNLFIPRLGARRPGQS-WN 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC-CC
Confidence 9999999999999999999999999999999999999763 4888877776665555555566887653211110 00
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCC
Q 035636 235 EGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGF 313 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 313 (515)
. .+ ...+.. ..++.+++++..+...+. ............+..|.+.++ .|.
T Consensus 187 ~-~~-------------~~~~~~----------~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lg~ 238 (393)
T PRK11195 187 P-IA-------------LLRDFF----------HACRVLWRDKLGRFSLAG----TTLFWGAGATLRFLVLAWAPVALGI 238 (393)
T ss_pred H-HH-------------HHHHHH----------HHHHHHHhCchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 00 000000 011233333222222211 111122223344455555554 599
Q ss_pred CChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 035636 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFV 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
++.+.+......+++.++++++.+++.||.++++.+..+.. .++....+.. ..+.+.......+.+
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~G 304 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL-------------QHSLLPAYPLLILIG 304 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH-------------HhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877766643 2222222221 112333333443444
Q ss_pred HhhhcccccchhhhcccCCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 035636 394 MGFAWSWGPLGWLIPSETFPLET-RTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVM 461 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (515)
.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+.+++++.
T Consensus 305 ~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 305 ALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLV 371 (393)
T ss_pred HhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 4444433344 444557655554 79999999999999999999998855 566644444444433333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=247.11 Aligned_cols=351 Identities=13% Similarity=0.104 Sum_probs=240.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-----GRRPT-MQIASFFFLVGVVLTSAA---FHISMLILGRLALGIG 145 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~l~~i~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (515)
|.+..++|.+ +.....+ ++.+++|+++||+ |||+. +..+.++.+++..++++. ++++.+.+.+++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 7888889987 4444444 6889999999999 99985 667777777777777775 4788899999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 225 (515)
.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.+++.++..+..++.||+++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~-~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR-YLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999988652 158999999999887777666666787653
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
.. ++.++.+ +....++++.++++. .+...+..+...........+.+
T Consensus 200 ~~---~~~~~~~--------------------------~~~~~~l~~~~~~~~----~~~~ll~~~l~~~~~~~~~~~~~ 246 (491)
T PRK11010 200 TI---PVPKTLE--------------------------QAVVAPLRDFFGRNN----AWLILLLIVLYKLGDAFAMSLTT 246 (491)
T ss_pred cc---ccccchh--------------------------hhHHHHHHHHHcCcC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0000000 000112334443221 22222222222223333444555
Q ss_pred HHH-HHcCCCChhHHHHHH-HHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 306 VLF-QTVGFGSEASLLSAV-ITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 306 ~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.++ ++.|++..+.+.... ...++.+++.+++|++.||+++|+.+..+..+.++..+++..... ...+.+
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~~~~ 317 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDKNLY 317 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHH
Confidence 554 557999999999874 556799999999999999999988777655554444333322111 111122
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGL 463 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (515)
.......+.....+.... ..+.+..+..+++.+++..|+.+....+|..+++++.|.+.+..|+...+.+..++.+.++
T Consensus 318 ~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l 396 (491)
T PRK11010 318 SMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL 396 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 222222221212222222 2345566888888899999999999999999999999999999998777766666666666
Q ss_pred HHHhcccc
Q 035636 464 FAMFLLPE 471 (515)
Q Consensus 464 ~~~~~~~~ 471 (515)
+.....++
T Consensus 397 ~~~~~~~~ 404 (491)
T PRK11010 397 LLLLVCRQ 404 (491)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=243.49 Aligned_cols=329 Identities=10% Similarity=0.050 Sum_probs=237.3
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
++|+|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.++++|++.|.+.+...+.
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 116 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTV 116 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhC
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERG 231 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~ 231 (515)
..++..|..|+++|++++++.....++|.+++|.+++.+.+ .+|+..|++.++..++..+.. +++||+++. ++
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~~ 190 (395)
T PRK10054 117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---IA 190 (395)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhccccc---cc
Confidence 99999999999999999999999999999999999999864 589999999888777665444 335554321 00
Q ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHH--
Q 035636 232 RLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQ-- 309 (515)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 309 (515)
+.++ + ....++.+++ +.++...+..++..........+.+.+..
T Consensus 191 ~~~~-------------------------~-----~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (395)
T PRK10054 191 TETG-------------------------S-----VWSPSVLLQD----KALLWFTCSGFLASFVSGAFASCISQYVMVV 236 (395)
T ss_pred cchh-------------------------h-----hhhhhhhccC----ceehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 0000 0 0001222222 22333333333322223333334444443
Q ss_pred -HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 035636 310 -TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVL 388 (515)
Q Consensus 310 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (515)
+.+.+....+.......+.........+++.||.++|+.+..+.....++...+... ....+...+.
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 304 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GNSLLLWGMS 304 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------chHHHHHHHH
Confidence 335556666777777777777778888999999999998887776666665555431 1122333334
Q ss_pred HHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH
Q 035636 389 VCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFA 455 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 455 (515)
..+++.+... ..|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|..++..++...
T Consensus 305 ~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 305 AAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 4444444332 23455666778899999999998764 67789999999999999999865554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=240.32 Aligned_cols=320 Identities=12% Similarity=0.109 Sum_probs=233.3
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
++|+|..+.|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+.
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhC
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERG 231 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~ 231 (515)
..+++.|++|+++|++++++.....++|..+||.+++.+.+ .+||+.|++.++..++..++. ++.||.+. ++
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~---~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~ 192 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ---YDFRLVCATGAVLFVLAAAFNAWLLPAYKL----ST 192 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cc
Confidence 99999999999999999999999999999999999999964 689999999888766654443 33554210 00
Q ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc
Q 035636 232 RLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV 311 (515)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
..++ .++++++.+++ +.++...+..+...........+.|.+.++.
T Consensus 193 ~~~~------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (400)
T PRK11646 193 VRTP------------------------------VREGMTRVLRD----KRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI 238 (400)
T ss_pred cchh------------------------------hHHHHHHHHcC----chHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 0000 00122333332 2222222222222222233456788888887
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhh-hccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAV-DKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
+.++.+.+......++....+....+++. ||++.++.+..+..+.+++..++... + ..+...+...
T Consensus 239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------~-~~~~~~~~~~ 305 (400)
T PRK11646 239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------S-NLQQLFTLIC 305 (400)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------h-hHHHHHHHHH
Confidence 66778888887777776666555555555 45665666666665555555444332 1 1222233333
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+++.+.... .|....+..+..|++.||++.|+.+....+|..++|.+.|.+.+..+
T Consensus 306 l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 306 LFYIGSIIA-EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHH-HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 334433322 34556777899999999999999999999999999999999998753
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=239.07 Aligned_cols=347 Identities=11% Similarity=0.093 Sum_probs=248.8
Q ss_pred HHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 035636 27 VIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~ 106 (515)
..+++...+..|++.+..++.. |.+++++ |+|..+.|++.+.+++++.+++++.|++.||+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~--~~~~~~~-----------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~ 65 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV--PQFQQAF-----------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777888887766544 5666665 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHH
Q 035636 107 GRRPTMQIASFFFLVGVVLTSA---AFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183 (515)
Q Consensus 107 Grr~~~~~~~~l~~i~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 183 (515)
|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+
T Consensus 66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC------------------------CCchHHHHHhhhHHHHHHHHhhcc--ccCchhhHHhhCChHHHH
Q 035636 184 ANMVNYAMSNVH------------------------PYGWRLSLAIAGVPALFLCVGSMS--ICETPTSLIERGRLEEGR 237 (515)
Q Consensus 184 ~~~l~~~l~~~~------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~ 237 (515)
+|.++..+.... ..+||++|++.+++.++..+...+ .||.++ ++ ++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~-- 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK-- 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc--
Confidence 999988774221 136999999988877765544432 333211 00 00
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--CCCC
Q 035636 238 VVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV--GFGS 315 (515)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~ 315 (515)
+.....+.++.+++ |.++...+..++..........+.+.+.++. +.+.
T Consensus 218 -------------------------~~~~~~~~~~~~~~----~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~ 268 (410)
T TIGR00885 218 -------------------------QISFSASLSRLARI----RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA 268 (410)
T ss_pred -------------------------cccchhhHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH
Confidence 00000112223322 3344444444444555555667777777664 3444
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHh
Q 035636 316 EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMG 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
...............+|+++++++.||+++|+.+........+..++.... +.. .......+.+++
T Consensus 269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------------~~~--~~~~~l~~~glf 334 (410)
T TIGR00885 269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------------GGH--VGLYCLTLCSAF 334 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CCh--HHHHHHHHHHHH
Confidence 444555666668889999999999999999998877776666665555441 111 223344444455
Q ss_pred hhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 396 FAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
.+..+ |..+....+..+++.+..+.++... .+|+.+.|++.|.+.|..
T Consensus 335 ~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 335 MSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence 55555 6667777788887765444554443 399999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=244.60 Aligned_cols=296 Identities=16% Similarity=0.166 Sum_probs=227.4
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhh
Q 035636 24 VACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVC 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~ 103 (515)
+.++..++...+....|...++....+ ..++|.+....+.+.+.++++++++++.+++|.+.
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~------------------g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~ 105 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLS------------------GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLG 105 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHc------------------CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 444555556666666666554433211 13567789999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHH
Q 035636 104 SKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183 (515)
Q Consensus 104 dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 183 (515)
||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++
T Consensus 106 ~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ 185 (495)
T KOG2533|consen 106 DRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIF 185 (495)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc----CCCchHHHHHhhhHHHHHHHHhh-ccccCchh--hHHhhCChHHHHHHHHHHhCCCcchHHHHHH
Q 035636 184 ANMVNYAMSNV----HPYGWRLSLAIAGVPALFLCVGS-MSICETPT--SLIERGRLEEGRVVLQRIRGVANVDNEFDSI 256 (515)
Q Consensus 184 ~~~l~~~l~~~----~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
|.+++..+.+. ...||||.|++.++++++..++. +++|+.|. +...+++.+-. .++.+
T Consensus 186 ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~------------ 250 (495)
T KOG2533|consen 186 GGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLR------------ 250 (495)
T ss_pred HHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHH------------
Confidence 99999886431 12799999999999998877666 45999986 22222111111 01100
Q ss_pred HHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhh
Q 035636 257 VHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLV 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
+.......++.++ ..+++..+.+.+|.+.+..++.....+.+.+|+|.++++ .|++..++..+..+..++++++.++
T Consensus 251 -~~~~~~~~~~~~~-~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ 328 (495)
T KOG2533|consen 251 -ESPSGGIENKFKW-KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLIL 328 (495)
T ss_pred -hccCCCcccccCH-HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHH
Confidence 0000000111122 222333445778999999999988889999999999988 4799999999999999999999999
Q ss_pred HHHhhhcc----CchhHHHhhhH
Q 035636 336 SVYAVDKA----GRRALLLEAVV 354 (515)
Q Consensus 336 ~~~l~d~~----~~~~~~~~~~~ 354 (515)
+|+++||+ .+|........
T Consensus 329 ag~lsdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 329 AGYLSDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999994 44444443333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=233.71 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=226.9
Q ss_pred CcccCCcchHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 035636 72 NYCKYDNQFLQLFTSCLYL-AALIASFVASRVCSKQGRRPTM-QIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFA 149 (515)
Q Consensus 72 ~~~~~s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~-~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 149 (515)
+++|+|..++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+..
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTA 122 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3458999999999877655 55566655555 9999999875 4556666778888889999998877666555555677
Q ss_pred hhhhhhhhhhccCCCCcc--hhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhh
Q 035636 150 NQAVPLFLSELAPAKIRG--ALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTS 226 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~ 226 (515)
.+...+++.|+.++++|. ...++.+.+.++|.+++|++++.+.+. .|||..|++.++..++..+.. .++||.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 200 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE 200 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHhhcCccCCC
Confidence 888888888888766553 445788899999999999999999653 689999999988877665554 447776531
Q ss_pred HHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHH
Q 035636 227 LIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPV 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
+++.++ +.+. .++ .++.....+ ...............+.|.
T Consensus 201 ---~~~~~~------------------------------~~~~----~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ 241 (393)
T PRK15011 201 ---LPLATG------------------------------TLEA----PRR-NRRDTLLLF-VICTLMWGTNSLYIINMPL 241 (393)
T ss_pred ---Cccccc------------------------------cccc----ccc-ccccHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 001 011112222 2222222334445567887
Q ss_pred HHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 035636 307 LFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIV 385 (515)
Q Consensus 307 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (515)
++++ .|+++.+.+.......+..+++.++.|++.||++||+.+..+.....+....+.. . ...+..
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~ 308 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM------------A-HSPAIL 308 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH------------H-hhHHHH
Confidence 7754 5999888888888777888899999999999999998777655544433222211 1 112222
Q ss_pred HHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 035636 386 VVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (515)
+....+.....+... +....+..|.+|+ .++++.++.+...++|..++|.+.|.+.+..++...+....+..+..++.
T Consensus 309 l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 309 LGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222222222222211 1223445688885 58999999999999999999999999999888766666666665666666
Q ss_pred Hhcccc
Q 035636 466 MFLLPE 471 (515)
Q Consensus 466 ~~~~~~ 471 (515)
.+..||
T Consensus 387 ~~~~~~ 392 (393)
T PRK15011 387 LLRIKD 392 (393)
T ss_pred HHhhcC
Confidence 555553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=233.95 Aligned_cols=318 Identities=14% Similarity=0.144 Sum_probs=232.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|+|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++.|++.|++.+...+...
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999988888887 778999999999999999999888888
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChH
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLE 234 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 234 (515)
.++.|++| ++|++++++.+.+..+|..+++.+++.+.+....+||+.|.+.++..++... .++|+.++ +++
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~------~~~ 180 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRR------RVA 180 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhcc------ccC
Confidence 89999986 5799999999999999999999998888654323499998877665444332 22343321 000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCC
Q 035636 235 EGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (515)
+ +++..+...++.++ ++.++...+..+.....+.....+.|.++++.|++
T Consensus 181 ~--------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~ 230 (355)
T TIGR00896 181 A--------------------------NQTTTRLTPVRIWR----SPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGAS 230 (355)
T ss_pred C--------------------------CCCCCCCCCchhhc----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 00000112223332 24445444444455555667778899999888999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhHHHhhhccC-chhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 035636 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAG-RRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFV 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
..+.+...+...++.++++++.+++.||++ ||+.+..+..+.+++.+.+.+.. ....+ . ...+++
T Consensus 231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~-~~~l~g 296 (355)
T TIGR00896 231 AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MHGLW--A-WALVLG 296 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hhHHH--H-HHHHHH
Confidence 999999999999999999999999999994 56666666666666555444321 11111 1 223344
Q ss_pred Hhhhcccccchhhhcc-cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 394 MGFAWSWGPLGWLIPS-ETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
.+.+... +....... +..+++.++...++.+.+.+++..++|.+.|.+.|..+
T Consensus 297 ~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 297 LGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433322 33333333 34455778899999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=234.46 Aligned_cols=320 Identities=15% Similarity=0.173 Sum_probs=229.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|+|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHh-hccccCchhhHHhhCCh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVG-SMSICETPTSLIERGRL 233 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~ 233 (515)
.+..|.+++++|+++.++.+.+..+|..++|.+++.+.+. .+||+.|++.++..++..+. .++.||+++.. +++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 193 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLGAGVTFSMARWMPETRPAD---ARR 193 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cch
Confidence 8999999999999999999999999999999999988653 68999999988776655443 34577765310 000
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cC
Q 035636 234 EEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VG 312 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 312 (515)
++ .++.+++.+++ +.++...+..+....+...+..+.+.++++ .|
T Consensus 194 ~~------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 239 (394)
T PRK11652 194 TR------------------------------VLASYRTLLSN----RRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLG 239 (394)
T ss_pred hH------------------------------HHHHHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcC
Confidence 00 00112223322 223222222333333344445556666666 69
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVF 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
++..+.++......++.+++.++.+++.||.+++... ......++.+.+...... .....+.......+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 309 (394)
T PRK11652 240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMNVWTLLVPAALF 309 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHH
Confidence 9999989888888888889999999999988733222 222222222222111100 111223334444444
Q ss_pred HHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 393 VMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
+.+.+.. .|....+..|.+| +.++++.++.+....+|+.+++.+.+.+...
T Consensus 310 ~~g~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 310 FFGAGML-FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHH-HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4444433 3454566668777 5789999999999999999999998877654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=229.95 Aligned_cols=332 Identities=16% Similarity=0.120 Sum_probs=244.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTM----QIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~----~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|+|..++|++.+++.+...++++++|+++||+|||... ..+..+..+ ..+.++++++.+++.|+++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 89999999999999999999999999999999985433 222222222 344567899999999999999998889
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER 230 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 230 (515)
|...++..++ +++|+++.+......++|.+++|++++.+.+. .|||..|++.++..++..+. ..++|+++. +
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~--~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~---~ 184 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM--FDEQNILAILTAGLAFMLIG-FLIKPTIPP---K 184 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHHHHH-HHcCCCCCC---C
Confidence 9988888765 46789999999999999999999999999664 68999998876553333332 233333210 0
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 035636 231 GRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT 310 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
++.++ ++..+.++.++.+|+ |.++.+.+..+...........+.|.++++
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~~l~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~ 234 (382)
T TIGR00902 185 DAIPE--------------------------DESQGDSAFIALLKN----PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA 234 (382)
T ss_pred ccccc--------------------------cccccchhHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000011123344333 545555555555556667777788888888
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.|.++.+.+.......++.+++.++.+++.||+++|+.+..+.....+...++... ++.+.......
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~ 301 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQI 301 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888887766542 23344555566
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVS-TNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVM 461 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (515)
+.+..++.... ....++++. |++.++++.++++. ...+|..+++.+.|.+.|..+...++..+++.++.
T Consensus 302 l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T TIGR00902 302 LHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66666655544 345666777 98999999999874 56789999999999999999876666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=232.85 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=219.8
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF-HISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 151 (515)
++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+++++++ +++.+++.|+++|++.+ ..+
T Consensus 31 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 109 (366)
T TIGR00886 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFA 109 (366)
T ss_pred HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhH
Confidence 3499999999999999999999999999999999999999999999999999999999 99999999999999865 456
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc--------CCCchHHHH-HhhhHHHHHHH-Hhhcccc
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV--------HPYGWRLSL-AIAGVPALFLC-VGSMSIC 221 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~--------~~~~wr~~f-~~~~~~~~~~~-~~~~~~~ 221 (515)
....++.|++|+++|+++.++.....++|..+++.+++.+... ...+||+.| +..++...+.. +...+.+
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999987778877777776655431 124799999 44454444433 3334466
Q ss_pred CchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHH
Q 035636 222 ETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIM 301 (515)
Q Consensus 222 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (515)
|+|+.. ++.++.+. .+.... .+++..+...+.+++ +.++...+..+........+.
T Consensus 190 ~~~~~~---~~~~~~~~-------~~~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 245 (366)
T TIGR00886 190 DTPPGK---PATGKLSF-------KGARWS----------VGTGALGDQLKVFRD----RHTWILALLYSVTFGSFLGVS 245 (366)
T ss_pred cCCccc---ccchhccc-------cccccc----------ccchhHHHHHHHHhc----cchhhHHHHHHHHHHHHHHHH
Confidence 665311 00000000 000000 000000012233332 224444444444444556677
Q ss_pred HhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 035636 302 FYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380 (515)
Q Consensus 302 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (515)
.+.|.++++ .|+++.+++.......+..++++++.+++.||+++|+....+......+..++..... .+.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 316 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV---------SPL 316 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---------Ccc
Confidence 788888865 4999999998899999999999999999999999988777666555554444433210 100
Q ss_pred hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHH
Q 035636 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLF 431 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g 431 (515)
..+.......+.....+.... ..+.+..+..| +++|++.|+.+..+++|
T Consensus 317 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 317 SLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 222222333333333333332 34566678777 68999999998887765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=221.15 Aligned_cols=329 Identities=13% Similarity=0.089 Sum_probs=230.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcch----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRR----PTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 88999999999999999999999999999999994 3333222222 22334456889999999999999999899
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER 230 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 230 (515)
+...+++.++ +++|+++.+......++|.++||++++++.+. .|||..|++.++..++..+...+.||+++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~---- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW--FGEQAILWILTAGVASMLLGQLLRPTIMPQ---- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHHHHHHHccCCCCCc----
Confidence 9888888877 35588899999999999999999999999664 689999988776555544443444543210
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 035636 231 GRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT 310 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
++.++ +.++...++++.+++ +.++...+..+...........+.|.+.++
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~i~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (382)
T PRK11128 185 GESRQ--------------------------QESAGWPAWKALLKE----PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA 234 (382)
T ss_pred ccccc--------------------------ccccccchHHHHHcC----hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 00000 000011234455443 445544444444344455566677778888
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.|.+..+.+.......++.++..++.+++.||+++|+.+..+....++..+++... ++.+..++..+
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 301 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQI 301 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHH
Confidence 89999999999998889999999999999999999999888877777765544331 23344444555
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST-NMLFTFLVAQAFLSMLCNMKAGIFFFFAAWI 458 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (515)
+.+.++... .+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..+...++..+++.
T Consensus 302 l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~ 368 (382)
T PRK11128 302 LHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVA 368 (382)
T ss_pred HHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555554443 23334555565 556678888888644 5667789999999999998865544444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=224.37 Aligned_cols=349 Identities=11% Similarity=0.094 Sum_probs=232.8
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR-RPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
++|++..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...+
T Consensus 32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 458999999999999999999999999999999965 7788888888888988889999999999999999998777777
Q ss_pred hhhhhhh--------hccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc
Q 035636 152 AVPLFLS--------ELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223 (515)
Q Consensus 152 ~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 223 (515)
...++.. |......|.+..| .+|.++++.+++.+.. ...|+ +|++.++..++..+..+++||+
T Consensus 112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~--~~~~~-~f~~~~~~~~~~~~~~~~~~e~ 182 (418)
T TIGR00889 112 LTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI--ELSNI-QLYITAGSSALLGVFALTLPDI 182 (418)
T ss_pred HHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc--cchhH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 6665532 2233334555554 4688888888887732 12354 4556666666655555678887
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHh
Q 035636 224 PTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFY 303 (515)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (515)
|+.. ++++.+. + +..+.+.++.+|.+. ++.+.+..+...........+
T Consensus 183 ~~~~-~~~~~~~-------------------------~--~~~~~~~~~~~k~~~----~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T TIGR00889 183 PVAK-STAKMSI-------------------------K--VMLGLDAFILFKNKR----MAIFFFFSMLLGAPLQITNIF 230 (418)
T ss_pred CCCc-cccccCH-------------------------H--HHhhhhHHHHhcCCC----eeeHHHHHHHHHhHHHHHHHh
Confidence 6310 0000000 0 000011223333322 222333333322333344456
Q ss_pred HHHHHHHcCCCC--------hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 304 APVLFQTVGFGS--------EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 304 ~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
.+.++++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++..++..++....
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------- 302 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------- 302 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 677777666443 5668888888999999999999999999999999988887777655554311
Q ss_pred CCcch-hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcc------
Q 035636 376 SLNKV-EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAV-STNMLFTFLVAQAFLSMLCNMK------ 447 (515)
Q Consensus 376 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~------ 447 (515)
... ..+...+..++.+.+.... .+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.+..+
T Consensus 303 --~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~ 379 (418)
T TIGR00889 303 --PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD 379 (418)
T ss_pred --cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence 111 1222333344444444332 3444566789999999999999997 5678999999999999999854
Q ss_pred ch-hhHHHHHHHHHHHHHHHhccccCC
Q 035636 448 AG-IFFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 448 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
+. .+...+++.++..++.+++.+|++
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33 344555555666666666666553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=222.24 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=228.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchH-HHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-----GRRP-TMQIASFFFLVGVVLTSAA---FHISMLILGRLALGIG 145 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~l~~i~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (515)
|+|.+++|++..+... .+..+++|+++||+ |||| .+..+.++.+++..+.++. .+++.+++..++.+++
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 8999999999777775 68999999999999 8875 7888888888888887776 3577888888888998
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 225 (515)
.+...+...+++.|++|+++|+++.++...+.++|.++++.++..+.+.. .|||..|++.++..++..+...+.||+++
T Consensus 108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-~gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV-LGWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999998886521 48999999988887766665556777643
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHH-HHhH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAI-MFYA 304 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 304 (515)
.. ++.++.. ++.++.+++.++++. ++...+..+......... ....
T Consensus 187 ~~---~~~~~~~--------------------------~~~~~~~~~l~~~~~----~~~~l~~~~l~~~~~~~~~~~~~ 233 (402)
T PRK11902 187 PA---RPPRSLG--------------------------EAVVGPLRDFFSRRG----AWALLLLIVLYKLGDAFAGSLST 233 (402)
T ss_pred cc---cccchhH--------------------------HHHHHHHHHHHhCcC----HHHHHHHHHHHHhHHHHHHHHHH
Confidence 21 0000000 000112334444322 222222222221111111 2233
Q ss_pred HHHHHHcCCCChhHHHHHHHHH-HHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 305 PVLFQTVGFGSEASLLSAVITG-LVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
+++.++.|+++.+.++.....+ ++.+++.++++++.||+++|+.+..+..+..+..+.+..... .....+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~ 304 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLW 304 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHH
Confidence 4455567999999988876655 468999999999999999998877666655544433322211 111222
Q ss_pred HHHHHHHH----HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 035636 384 IVVVLVCV----FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIV 459 (515)
Q Consensus 384 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (515)
.......+ .+.... ...+....++.+.+|.+. .++.+....++...++.+.|.+.|..|+...+..++++.
T Consensus 305 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 305 TMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 22222221 112221 222344556667777554 455555667777777788999999999877666666665
Q ss_pred HHHHHHHhc
Q 035636 460 VMGLFAMFL 468 (515)
Q Consensus 460 ~~~~~~~~~ 468 (515)
+.+++..+.
T Consensus 380 ~~~~~~~~~ 388 (402)
T PRK11902 380 LPGLALLWL 388 (402)
T ss_pred HHHHHHHHH
Confidence 555554433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=234.16 Aligned_cols=377 Identities=16% Similarity=0.186 Sum_probs=270.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILG-RLALGIGVGFANQA 152 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~ 152 (515)
++-+..+++|+.++......+.+++.+.+.||||.|++.++|.++..++.++..|++++|++++. -++.|+|.|..+..
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 37788899999999999999999999999999999999999999999999999999999988885 58889999999999
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC-chhhHHhhC
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE-TPTSLIERG 231 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-sp~~~~~~~ 231 (515)
....+..+|++ +|+.+.|+..++.++|.++-|.+...+.+. .|||+.+++.+.+.+-.++.....++ +++....
T Consensus 156 aiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~--~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-- 230 (509)
T KOG2504|consen 156 AVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLSK--YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-- 230 (509)
T ss_pred hhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--
Confidence 99999988865 499999999999999999999998888554 79999999988888666665544333 2221001
Q ss_pred ChHHHHHHHHHH------------hCCCcchHH-HHHHHHHHHhhcccCc--chhhhc----ccCCchhHHHHHHHHHHH
Q 035636 232 RLEEGRVVLQRI------------RGVANVDNE-FDSIVHACEMANQVTK--PFSKLM----KRSSRPPLVIAILLQVFQ 292 (515)
Q Consensus 232 ~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~ 292 (515)
.++..+..... ...+..... .....+..++.+++.. +.+..+ .+..+.+.++.+.+...+
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~ 309 (509)
T KOG2504|consen 231 -EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLF 309 (509)
T ss_pred -hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence 00000000000 000000000 0000000011111101 111111 133444778888888888
Q ss_pred HhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh--HHHhhhHHHHHHHHHHHHHHHHh
Q 035636 293 QFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA--LLLEAVVQMFITQSIIGIILAIW 370 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 370 (515)
...++.....++|.+.+..|++..+++.+.++.++..++++++.|++.|+...++ ...++.+..+++.+.+...
T Consensus 310 ~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---- 385 (509)
T KOG2504|consen 310 AYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA---- 385 (509)
T ss_pred HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 8999999999999999999999999999999999999999999999999987433 3444444444444333221
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch
Q 035636 371 LKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AG 449 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 449 (515)
...+.......+++... ..+..+....+.|+.+.+.-..+.|+...+..++..++|++.|.+.|..+ |.
T Consensus 386 ---------~~~~~l~~~~~~fG~~~-g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 386 ---------TTYVGLIVFSILFGFCV-GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred ---------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 12223333333333333 23344545567899999999999999999999999999999999999988 77
Q ss_pred hhHHHHHHHHHHHHHHHhccc
Q 035636 450 IFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~ 470 (515)
..+.+.++..+.+..+++..+
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 777777777776666666665
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=224.29 Aligned_cols=350 Identities=13% Similarity=0.071 Sum_probs=215.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hhh-----hhHHHHHHHHHHHhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS---AAF-----HISMLILGRLALGIG 145 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~~~-----~~~~l~~~r~l~G~~ 145 (515)
+|+|..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++ .....++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999999887766655433221 111 111122334444443
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 225 (515)
.....+....+..+. ++++++.++......++|..++|.+++.+.+ .+|+..|++.++++++..++.++.+++++
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 121 FLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN---INPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh---cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence 333333333333222 3456888899999999999999999999865 47999999988888776666655433321
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
....+++.++. ++++.+.+...+.+++ +.++...+..+.....+.....+.|
T Consensus 196 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~~----~~~~~l~l~~~~~~~~~~~~~~~~~ 247 (420)
T PRK09528 196 STAKVANALGA------------------------NASAVSLKDALALLKL----PKFWFLVLYVIGVACFYDVFDQQFP 247 (420)
T ss_pred chhhhccchhc------------------------ccccccHHHHHHHccC----CCeEeehHHHHHHHHHHHHHHHHHH
Confidence 10000000000 0000000112223332 2222222222222222233333445
Q ss_pred HHHHH----cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 035636 306 VLFQT----VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVE 381 (515)
Q Consensus 306 ~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (515)
.++.+ .+.+..+.+...++..+..+++.++.+++.||+++|+.+..+..+..+...++.+. .+
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~~ 314 (420)
T PRK09528 248 NFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------TG 314 (420)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------cc
Confidence 54433 35666777888888889999999999999999999999887777776665555432 12
Q ss_pred hHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhhHHH-HHHHH
Q 035636 382 AIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF-AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFF-AAWIV 459 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 459 (515)
.+.......+.+...... .+....+..|.+|++.+++..+. .++...+|.++++.+.|.+.|..|+...+.. +++.+
T Consensus 315 ~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~ 393 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVL 393 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 233333333333333222 22334566788899999888766 5777889999999999999999886655444 44444
Q ss_pred HHHHHHHhccc
Q 035636 460 VMGLFAMFLLP 470 (515)
Q Consensus 460 ~~~~~~~~~~~ 470 (515)
+..++.....+
T Consensus 394 i~~~~~~~~~~ 404 (420)
T PRK09528 394 LFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHhc
Confidence 44444443333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=222.80 Aligned_cols=377 Identities=14% Similarity=0.122 Sum_probs=267.9
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHH
Q 035636 16 EGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIA 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~ 95 (515)
+++..++.|..-.+..+|..+......++- .+. .-|+..++++..+..+...+.
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv---------~~l-----------------t~S~~~valv~~a~~LP~~Ll 61 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLV---------TQL-----------------TGSPLMVALVQAASTLPILLL 61 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----------------hCCHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665555544421 111 337889999999999999999
Q ss_pred HHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhh
Q 035636 96 SFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-----FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALN 170 (515)
Q Consensus 96 ~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 170 (515)
++++|.++||++||++++.+.++.++..++.++. .+.+.+++.-++.|++.+...|+..+++.|..|+++...+.
T Consensus 62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~ 141 (524)
T PF05977_consen 62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN 141 (524)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 9999999999999999999998877665554432 47789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcch
Q 035636 171 ISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVD 250 (515)
Q Consensus 171 ~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
++.+...++..++||.++|.+... .|-.+.|.+.++..++........++.++ .++.+++ +
T Consensus 142 al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e--~------------ 202 (524)
T PF05977_consen 142 ALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRE--R------------ 202 (524)
T ss_pred HHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchh--h------------
Confidence 999999999999999999998654 56778888887766555444433332211 0000000 0
Q ss_pred HHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHH
Q 035636 251 NEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVN 329 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 329 (515)
.....++-++....++.+....+..+........+...+|.+.++ .|.++...|++.+..+++.
T Consensus 203 ---------------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGa 267 (524)
T PF05977_consen 203 ---------------FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGA 267 (524)
T ss_pred ---------------hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 011122222222222333333333333333334455667888765 5889999999999999999
Q ss_pred HHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcc
Q 035636 330 VFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPS 409 (515)
Q Consensus 330 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
++|.++.+++.+|+++++.+..+.+..+++.+.+++. .+.+...+.+++.+.+..... ....+...
T Consensus 268 i~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~-~~~~t~~Q 333 (524)
T PF05977_consen 268 ILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIALFLAGAAWIIAN-SSLNTLVQ 333 (524)
T ss_pred HHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999888888877777766666552 233444445555555544433 33356668
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 035636 410 ETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAM 466 (515)
Q Consensus 410 ~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (515)
+..|++.||++++++.+....+..+|..+.|.+.+..|....+..+++.++...++.
T Consensus 334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985544445544444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=216.12 Aligned_cols=345 Identities=11% Similarity=0.090 Sum_probs=230.4
Q ss_pred cccCCcch-HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 73 YCKYDNQF-LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 73 ~~~~s~~~-~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
|+|+|.++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.+++++++.+.+.|++.|++.|...
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHh---hhHHHHHHHHhhccccCchhhHH
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAI---AGVPALFLCVGSMSICETPTSLI 228 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~esp~~~~ 228 (515)
+...++..|+|+++|+++.++..++..+|.+++++++.++.. +|||.-+.+ ......++++..+++|..++.+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s---~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT---LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 999999999999999999999999999999999999999654 688865444 34444455666677887666555
Q ss_pred hhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCc---chhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 229 ERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTK---PFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
-+++.+.......+.....+.+. . +.....+..... .+..-++...+++.++...+-......+++.+..|..
T Consensus 211 f~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q 286 (511)
T TIGR00806 211 FNRLEDVRGALPCELDQMVPGPG--G--KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVH 286 (511)
T ss_pred hccccccccccccccccCCCCCc--c--ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHH
Confidence 44332110000000000000000 0 000000000000 0111122223334444444555666667888888888
Q ss_pred HHHHHcCC-CChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHH
Q 035636 306 VLFQTVGF-GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAII 384 (515)
Q Consensus 306 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (515)
.+.++..- .+...|.+-++..+.+.+..+..|++-.++.+...+.++.....-+.+++... ...+.|.
T Consensus 287 ~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-----------~t~~Iw~ 355 (511)
T TIGR00806 287 TLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-----------QSHDIWV 355 (511)
T ss_pred HHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-----------cccchHH
Confidence 88877632 22356777778888888899999988555533323333332222222222111 2345677
Q ss_pred HHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 035636 385 VVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQ 437 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~ 437 (515)
..+...++...+.+.. ++....++.....+.-|..+|+++++..+-..+...
T Consensus 356 ~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 356 LYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 7777777777776654 344444455556566688888887776665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=251.42 Aligned_cols=335 Identities=10% Similarity=-0.018 Sum_probs=233.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 035636 79 QFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQI---ASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPL 155 (515)
Q Consensus 79 ~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~---~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 155 (515)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.+...+|++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 557889999999999999999999999999997643 22233333333444589999999999999999999999999
Q ss_pred hhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHH
Q 035636 156 FLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEE 235 (515)
Q Consensus 156 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 235 (515)
++.+++|+++|++++++.+++.++|.++||++++++... .+|++.|+..++..++.+++.+++|+++... ++...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec
Confidence 999999999999999999999999999999999999665 6899999666666666666666677654210 000000
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCC
Q 035636 236 GRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFG 314 (515)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 314 (515)
. ....+ ....++.. .+++.++...+..+..+.....+..+.|.++++ .|.+
T Consensus 208 ~--------------~~~~~----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 208 R--------------NIIRS----------TITLLKYA----KADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred c--------------chHHH----------HHHHHHHH----hcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence 0 00000 00112222 233556666665555555556677788888876 5999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC-------CCcchhhHHHHH
Q 035636 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG-------SLNKVEAIIVVV 387 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 387 (515)
+...+++.+..+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+.......... .......+...+
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 9999999999999999999999999988777666555555444444333321000000000 000122333444
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
..++++++.+.... ...+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+..
T Consensus 340 ~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 340 DLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444544444333 34677789999999999999999999999999999999887543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=249.76 Aligned_cols=326 Identities=10% Similarity=-0.021 Sum_probs=228.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS---AAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++++.++++|+++|++.+...+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 445679999999999999999999999999999999999877665555443 45789999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC-------CCchHHHHHhhhHH-HHHHHHhhccccCchh
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH-------PYGWRLSLAIAGVP-ALFLCVGSMSICETPT 225 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-------~~~wr~~f~~~~~~-~~~~~~~~~~~~esp~ 225 (515)
.+++.|++|+++|++++++...+..+|.++|+.+++++.... ..+|++.+.+..+. .++.+++.+++||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999999986530 02344444443333 3334444455787764
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
....+.+.++. .... .....++.+++. +.++...+..+...........+.|
T Consensus 205 ~~~~~~~~~~~--------------~~~~----------~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKKY--------------LFPK----------LLWRNLKLLRSD----RVLWLAIIGLSYFWFISQLAQANFP 256 (1146)
T ss_pred CCccccccccc--------------ccHH----------HHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 32111000000 0000 000112233322 3344444444443444455566677
Q ss_pred HHHHH-cCCCCh-hHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 306 VLFQT-VGFGSE-ASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 306 ~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.++.+ .|++.. ..+++.+..+++.+++.++.+++.||+++++.+.++.++.+++.+++... ...+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 323 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PSLA 323 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hhHH
Confidence 77654 699888 89999999999999999999999999998888877766666665555432 1223
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC 444 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (515)
..++..++++++.+.... ....++.+..|++.||+++|+.+++..++..+++.+.+.+..
T Consensus 324 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333 345667799999999999999999999998887776655543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=206.66 Aligned_cols=341 Identities=13% Similarity=0.070 Sum_probs=218.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+....|.+.|.|+++..+.++.+|.++||+|||+++++|+...++..++.++++|+..+.++|++.|+..| ....+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3577888999999999999999999999999999999999999999999999999999777777999999877 566788
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-Cc---hHHHHHhhhHHHHH-HHHhhccccCchhhHHh
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP-YG---WRLSLAIAGVPALF-LCVGSMSICETPTSLIE 229 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-~~---wr~~f~~~~~~~~~-~~~~~~~~~esp~~~~~ 229 (515)
++++|.+++++|+++++.+...+++|.++||.+|+++..... .| +-.+-++..+.+.. .....+++||+-+ .
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~ 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---L 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---c
Confidence 999999999999999999999999999999999999977221 11 11222333333333 3445577899832 1
Q ss_pred hCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCch---hHHHHHHHHHHHHhhhHHHHHHhHHH
Q 035636 230 RGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRP---PLVIAILLQVFQQFTGINAIMFYAPV 306 (515)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
+++.++.... + +..++..+..... ........|..... ...-.+.+..+.....+....++.+.
T Consensus 220 rk~~~~~~~~-~------~~~~~~~~~~~~~------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 220 RKRNDEHSTL-Q------EAADDRLALLKFA------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhhcccccch-h------hhhhhhhhhcchh------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 2211110000 0 0000000000000 00000111111111 11122223333333333333333333
Q ss_pred HH-HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccC--chhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 307 LF-QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAG--RRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 307 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
+. +..|+++.+.|.+.+..++.+.+.+....+..+|.+ .+-.+..+..++.-..+++.. ...+.
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~-------------~~~~~ 353 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL-------------ARTPV 353 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-------------cccch
Confidence 32 446999999999999999988888888777777765 333333333332222222221 11222
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
.......+..+..... .+-...+.....|+++||++.|+....+.++-++||.+.|.+..+.
T Consensus 354 ~l~~~s~l~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hhhHHHHHHHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 2333333333333222 3344566788999999999999999999999999999998876554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=199.49 Aligned_cols=353 Identities=10% Similarity=0.092 Sum_probs=266.6
Q ss_pred HHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 035636 27 VIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~ 106 (515)
...++...++.|+.....+... |.+.+.| +++..+.++++..++.|+.+++++.|++.+|+
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLi--p~l~~~f-----------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~ 75 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILI--PHLKEVF-----------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL 75 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhH--HHHHHHh-----------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 3344455677777777766443 6777666 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHH
Q 035636 107 GRRPTMQIASFFFLVGVVLTS---AAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI 183 (515)
Q Consensus 107 Grr~~~~~~~~l~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 183 (515)
|+|+.+++|+.++++++.++. ...++..++++-++.|.|.+...+..+.++....++++..+.+++.+.++++|.++
T Consensus 76 gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~ 155 (422)
T COG0738 76 GYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL 155 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999985 56789999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHhhccC-----------------CCchHHHHHhhhHHHHHHHHhhcc--ccCchhhHHhhCChHHHHHHHHHHh
Q 035636 184 ANMVNYAMSNVH-----------------PYGWRLSLAIAGVPALFLCVGSMS--ICETPTSLIERGRLEEGRVVLQRIR 244 (515)
Q Consensus 184 ~~~l~~~l~~~~-----------------~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~ 244 (515)
+|++++.+.... -..|+.+|...+...++..+.... .|+.+.- .++
T Consensus 156 gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~~---------- 220 (422)
T COG0738 156 GPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----APS---------- 220 (422)
T ss_pred HHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----ccc----------
Confidence 999998876520 024788888877776666655543 3332210 000
Q ss_pred CCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHH
Q 035636 245 GVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAV 323 (515)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 323 (515)
..+..+....+.++ +|.+....+..++..........|++.++.+ .|.+..++....+
T Consensus 221 -----------------~~~~~~~~~~~l~~----~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s 279 (422)
T COG0738 221 -----------------LGASGSAGLSSLFQ----NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLS 279 (422)
T ss_pred -----------------ccccccchHHHHHh----ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 00000012333333 3557777777777777888899999999988 6999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccc
Q 035636 324 ITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPL 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
...++.++|++++.++..|+...|.+.+..++..+.++...+.. . ...+....+.+.+.+.. .|.
T Consensus 280 ~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-----------g---~v~~~~l~~ig~F~sim-fPT 344 (422)
T COG0738 280 FFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-----------G---VVALYALFLIGLFNSIM-FPT 344 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-----------C---hHHHHHHHHHHHHhHHH-HHH
Confidence 99999999999999999999999888877665555544444421 1 23333444444444444 456
Q ss_pred hhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 035636 404 GWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF 451 (515)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 451 (515)
.++...+..| ++...+.+ .......|+++.|++.|++.|..+....
T Consensus 345 Ifslal~~l~-~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~ 390 (422)
T COG0738 345 IFSLALKNLG-EHTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLT 390 (422)
T ss_pred HHHHHHhccC-ccccccce-eeeeheecchHHHHHHHHHHHhhhhHHH
Confidence 6777778888 44444444 3466678999999999999999884433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=229.73 Aligned_cols=304 Identities=14% Similarity=0.162 Sum_probs=218.0
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr 108 (515)
..++..+......+.++..+ +.+.++| +++..+.|++.+.+.++++++.++.|+++||+||
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l--~~iek~F-----------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r 97 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSL--TTIERRF-----------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHR 97 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhc--hhhhhhh-----------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCc
Confidence 33345555555555555433 4565555 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh---------------------------------------------------hhHHHHH
Q 035636 109 RPTMQIASFFFLVGVVLTSAAF---------------------------------------------------HISMLIL 137 (515)
Q Consensus 109 r~~~~~~~~l~~i~~~~~~~~~---------------------------------------------------~~~~l~~ 137 (515)
|+++.+++++++++++++++.+ .+..+++
T Consensus 98 ~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (633)
T TIGR00805 98 PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLV 177 (633)
T ss_pred ceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHH
Confidence 9999999999999999998763 2456788
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC-C-------------------C
Q 035636 138 GRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH-P-------------------Y 197 (515)
Q Consensus 138 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~-------------------~ 197 (515)
+|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+.. + .
T Consensus 178 ~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiG 257 (633)
T TIGR00805 178 SQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIG 257 (633)
T ss_pred HHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHH
Confidence 9999999999999999999999999999999999999999999999999999886531 0 0
Q ss_pred chHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccC
Q 035636 198 GWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRS 277 (515)
Q Consensus 198 ~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (515)
+|+..|++.+++.++..+.++++|++.+....+.+.+..++ +.. +..+ ++... ..........+..+..
T Consensus 258 aWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~-~~~~-~~~~~-------~~~~~~~~~~~~~~~L 326 (633)
T TIGR00805 258 AWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET--EKL-EKSE-DKSRK-------KNSDITKDFPKIIKRL 326 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh--hcc-cccc-cccch-------hhhhhHHHHHHHHHHH
Confidence 27888999888887776666666665321100000000000 000 0000 00000 0000000111222233
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHH-HHHHHHhhHHHhhhccC--chhHHHhhh
Q 035636 278 SRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGL-VNVFSTLVSVYAVDKAG--RRALLLEAV 353 (515)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~~--~~~~~~~~~ 353 (515)
.+++.++...+..+........+..|+|.++++ .|+++.+++.+.....+ +.+++.+++|++.||++ .|+.+..+.
T Consensus 327 l~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~ 406 (633)
T TIGR00805 327 LCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAI 406 (633)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHH
Confidence 445778888888888888888899999999976 59999999998887765 56899999999999998 456666666
Q ss_pred HHHHHHHHH
Q 035636 354 VQMFITQSI 362 (515)
Q Consensus 354 ~~~~~~~~~ 362 (515)
....++.++
T Consensus 407 ~~~~~~~~~ 415 (633)
T TIGR00805 407 CLSTLSYLL 415 (633)
T ss_pred HHHHHHHHH
Confidence 665555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=221.81 Aligned_cols=329 Identities=13% Similarity=0.150 Sum_probs=229.7
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHH
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSK----QGRR-PTMQIASFFFLVGVVLTSAAFH------ISMLILGRLA 141 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l 141 (515)
++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+..+.+++.+++.+.++ ...+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 358999999999999999999999999999997 7874 5677888888888888877654 4567778899
Q ss_pred HHhhhhhhhhhhhhhhhhcc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc-----CCCchHHHHHhhhHHHHHHHH
Q 035636 142 LGIGVGFANQAVPLFLSELA-PAKIRGALNISFQLFITIGIFIANMVNYAMSNV-----HPYGWRLSLAIAGVPALFLCV 215 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-----~~~~wr~~f~~~~~~~~~~~~ 215 (515)
.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+... ...+||+.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 99998888888888999988 468899999999999889887776665544321 126899999999988877665
Q ss_pred hh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHh
Q 035636 216 GS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQF 294 (515)
Q Consensus 216 ~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (515)
.. .+.+|+++.. + ++ ++++.+.++.++...++|.++...+..+...
T Consensus 189 ~~~~~~~e~~~~~----~-~~----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (437)
T TIGR00792 189 ICFFGTKERYSEI----P-KN----------------------------IEKKLSLKQIFKALFKNDQLLILCLAYLFYN 235 (437)
T ss_pred HHHcCCEecCCCC----C-cc----------------------------cccCCCHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 54 4467654210 0 00 0001122222332233344555555554444
Q ss_pred hhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 035636 295 TGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (515)
........+.+++.+.. + +....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------- 307 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA------- 307 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 44444444555555443 4 45566677777789999999999999999999999888877776665554431
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 374 TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
....+...+...+.+.+.+.. .+..+++.+|..+ ++.+|.+.|+.+.+..++..+++.+.|.+.+..
T Consensus 308 -----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 308 -----GSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred -----chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112233333333444443333 3445666667654 556899999999999999999999999999876
Q ss_pred cc
Q 035636 447 KA 448 (515)
Q Consensus 447 ~~ 448 (515)
|+
T Consensus 382 G~ 383 (437)
T TIGR00792 382 GY 383 (437)
T ss_pred CC
Confidence 64
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=214.90 Aligned_cols=318 Identities=13% Similarity=0.100 Sum_probs=219.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-----cchHH-HHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-----GRRPT-MQIASFFFLVGVVLTSAA---FHISMLILGRLALGIG 145 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~l~~i~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (515)
|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 9999999999755 455555 89999999998 89887 567777788887777777 4666777888888999
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCc--------hHHHHHhhhHHHHHHHHhh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYG--------WRLSLAIAGVPALFLCVGS 217 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~--------wr~~f~~~~~~~~~~~~~~ 217 (515)
.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .+ ||..|++.++..++..+..
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~--~g~~~~~~~~wr~~f~i~ai~~l~~~~~~ 174 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP--EFANTGLITLWGYIFFWTALLILPGLLVT 174 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888544 45 9999999998877766555
Q ss_pred cc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhh
Q 035636 218 MS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTG 296 (515)
Q Consensus 218 ~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
++ .||+++. +++.++. . ++.++.+++.++++..++ ++...+..+.....
T Consensus 175 ~~~~~e~~~~---~~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (356)
T TIGR00901 175 LFLAKEPQED---ASVPKPL----------------T----------QAVLKPIREFFQRKNMIQ-ALLLLLLIVLYKLG 224 (356)
T ss_pred HHhccCCCcc---cccchhH----------------H----------HHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHH
Confidence 54 5664321 0000000 0 000112333333322222 33333333444455
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHH-HHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITG-LVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
......+.|.++++.|+++.+.+......+ +..+++.++++++.||+++|+.+..+.++.++...++.+.... ..+.+
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 303 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN-GHHDG 303 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc
Confidence 566777888888889999999888887666 5788999999999999999998887777766655544432110 00000
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHH
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM 429 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 429 (515)
.+....+.......+...+.+.. .+....+..|.+|+++||+.+|+.+...+
T Consensus 304 -~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 -ITFPHLLMLFLTITLEAVTGGLG-TVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred -cccchHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 00012233333333334443333 34556777899999999999999877654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-24 Score=189.59 Aligned_cols=323 Identities=15% Similarity=0.167 Sum_probs=257.1
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
++|+|+|.+..|+++++..++..+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+...
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999887 88889999999999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER 230 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 230 (515)
+..+.++.+.+|++ -+..++++....++|..+++.+...+.+.. .+||....+-++++++.++.++.-. .|.
T Consensus 118 VLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq~--~r~---- 189 (395)
T COG2807 118 VLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQA--LRE---- 189 (395)
T ss_pred HhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhhc--ccc----
Confidence 99999999999876 699999999999999999999998887654 5899999999999999888776321 110
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 035636 231 GRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT 310 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
+ . ...+.+..+...+ ++++..|.+.+++..+...++....|+|.++.+
T Consensus 190 -~--~-------------------------~~~~~~~~~~~~v----w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~ 237 (395)
T COG2807 190 -Q--A-------------------------ASIATKLVSVRKV----WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID 237 (395)
T ss_pred -c--c-------------------------ccccccccccccc----ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0 0 0001111122233 344778888888899999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA-GRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLV 389 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (515)
.|+|..+++...+...+.+++.++....+.+|. ++|+..+....++.++.+.+.+. +....+.. .
T Consensus 238 ~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~lw---~ 303 (395)
T COG2807 238 RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPILW---A 303 (395)
T ss_pred cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHHH---H
Confidence 999999999999999999999999999999975 46667777777777777666643 22333333 2
Q ss_pred HHHHHhhhcccccchhhhccc-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 035636 390 CVFVMGFAWSWGPLGWLIPSE-TFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG 449 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 449 (515)
.+.+.+.+..+ |+....+.. .-.++..+.-.|+.+.++++-...+|.++|++.|..|.+
T Consensus 304 ~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 304 LLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 33333333322 333333333 344566788889999999999999999999999999844
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=213.62 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=224.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH---hh-----hhhHHHHHHHHHHHhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS---AA-----FHISMLILGRLALGIG 145 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~~-----~~~~~l~~~r~l~G~~ 145 (515)
+|++..+.|++.+++.++..+++++.|+++||+|||+.++.++...+++..... +. +.+..+++.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999988776655443321 11 2234556778899998
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCch
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETP 224 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp 224 (515)
.+...+....+..|..+ ++++..+......++|.+++|.+++.+.+ .+||.+|++.+++.++..++.+. .||+|
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred hccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88888888888777533 34567788888889999999999998855 58999999998888776655544 34433
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH
Q 035636 225 TSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
+. + +.+++. + .+.++++.++.++.+++ +.++.+.+..+.....+.....+.
T Consensus 188 ~~---~-~~~~~~-------~--------------~~~~~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SS---A-TVANAL-------G--------------ANASAFSLKLALELFRQ----RKFWMFVLYVVGVACVYDVFDQQF 238 (396)
T ss_pred hh---h-hhhccc-------c--------------cccCCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 000000 0 00000111123344433 223333333333333334444456
Q ss_pred HHHHHHc----CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 035636 305 PVLFQTV----GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380 (515)
Q Consensus 305 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (515)
+.++++. +.+....+....+..+...++.+..+++.||+++|+.+..+..+.++...+.... .
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------------~ 305 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------------T 305 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------C
Confidence 6665543 4455667888888888999999999999999999999888777666655543321 1
Q ss_pred hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhhHHH-HHHH
Q 035636 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF-AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFF-AAWI 458 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 458 (515)
+.+.......+.+.+.... ......+..+..|++.++++.+. .+....+|+.+++.+.|++.+..|+...+.. +++.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~ 384 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIV 384 (396)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHH
Confidence 2233333333333333222 11233455677788888887766 5678999999999999999999886544444 4443
Q ss_pred HHHHH
Q 035636 459 VVMGL 463 (515)
Q Consensus 459 ~~~~~ 463 (515)
++.++
T Consensus 385 ~i~~~ 389 (396)
T TIGR00882 385 LLFTL 389 (396)
T ss_pred HHHHH
Confidence 33333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-24 Score=206.57 Aligned_cols=349 Identities=17% Similarity=0.153 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035636 78 NQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFL 157 (515)
Q Consensus 78 ~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 157 (515)
.....|+.+.+.++..+++++.|+++|.||||.+++.+.++..+|+++++-++|...++++..+.|+|.|... .....+
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~i 155 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAI 155 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 3556899999999999999999999999999999999999999999999999999999999999999977665 455668
Q ss_pred hhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCC---hH
Q 035636 158 SELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGR---LE 234 (515)
Q Consensus 158 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~---~~ 234 (515)
+|..|.|.|....++......+...+++.++..+... .+|||.|++.++...+.+++.++...+|++...+++ ..
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~ 233 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH--SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKR 233 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC--CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHH
Confidence 9999999998888777766666666777777666432 589999999988876655544332222222222221 12
Q ss_pred HHHHHHHHHh------------------CC--C--cchHHHHHHH-------H--HHHhhc--ccCcchhhhcccCCchh
Q 035636 235 EGRVVLQRIR------------------GV--A--NVDNEFDSIV-------H--ACEMAN--QVTKPFSKLMKRSSRPP 281 (515)
Q Consensus 235 ~~~~~~~~~~------------------~~--~--~~~~~~~~~~-------~--~~~~~~--~~~~~~~~~~~~~~~~~ 281 (515)
+..+.++.+. +. . +..+....+. . --|... +.+.-..+++++ +|
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~---~r 310 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD---RR 310 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc---ch
Confidence 2223333321 11 0 0111111100 0 001111 111122334443 24
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCC---hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHH-HhhhHHH
Q 035636 282 LVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGS---EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALL-LEAVVQM 356 (515)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~-~~~~~~~ 356 (515)
.+...++..+.....++....+.|...... +-++ ...++.....+++..++.++.+.+..+++|-|.. +++...+
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 455555555555555666666667665543 4433 3567788888899999999999999988875554 4555554
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHH
Q 035636 357 FITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~ 436 (515)
.+++.++..... ++.... .....+.+.+.+....+ ....+.-..|++.-|++.|+..+++.+|+.++.
T Consensus 391 ta~~Gama~~~~---------~n~~~~--i~~~~l~g~giG~~~~~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~ 458 (599)
T PF06609_consen 391 TAFCGAMAAVRP---------DNKNAA--IAFLVLAGFGIGGILVP-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGY 458 (599)
T ss_pred HHHHHHHHHccC---------CCcchH--HHHHHHHHHhHHHHHHH-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHH
Confidence 444444333210 111122 22223333333333222 244455678999999999999999999999998
Q ss_pred HHHHHHHh
Q 035636 437 QAFLSMLC 444 (515)
Q Consensus 437 ~~~~~~~~ 444 (515)
.++..+..
T Consensus 459 aIy~~I~~ 466 (599)
T PF06609_consen 459 AIYNAIFT 466 (599)
T ss_pred HHHHHHHH
Confidence 88866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=208.00 Aligned_cols=386 Identities=13% Similarity=0.076 Sum_probs=268.2
Q ss_pred HHHHHHHHhhhhhhhhcccccccccchhHHHhhhh------hhhcc---------------------------ccccccC
Q 035636 25 ACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFP------RVYEK---------------------------KKHAHED 71 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---------------------------~~~~~~~ 71 (515)
++...++.+.+.++....++.++. |.+..+.-. ..... .+...+.
T Consensus 21 lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 98 (464)
T KOG3764|consen 21 LILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEA 98 (464)
T ss_pred eEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhc
Confidence 344555667788887777776654 567666531 00000 0001224
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 72 NYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 72 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
++.+-+..++|++.+++.+.+.+.+++.|.+.||+|+|-.+++|++.+..+++++++.++++.++++|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCC-cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh
Q 035636 152 AVPLFLSELAPAKI-RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER 230 (515)
Q Consensus 152 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~ 230 (515)
+..++++|.+|+++ |++++|+...+.++|.++||++|+.+.+. .|.+.+|++.++++++-..+.+++-|..+. +
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~---~ 253 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEM---D 253 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCcccc---C
Confidence 99999999998765 79999999999999999999999999665 789999999999999988877664432210 0
Q ss_pred CChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHH-H
Q 035636 231 GRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLF-Q 309 (515)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 309 (515)
+++..+..+++++++. +.++...........+....--.++.++ +
T Consensus 254 ------------------------------~~~~~~~~~~~~Ll~d----P~I~~~agai~~~n~~lafLePtlslwm~e 299 (464)
T KOG3764|consen 254 ------------------------------PDSTEQGTPMWSLLMD----PYILLIAGAITFSNSSLAFLEPTLSLWMLE 299 (464)
T ss_pred ------------------------------ccccccCccHHHHHhC----chHhhhhcchhhccchHHHhCcccHHHHHH
Confidence 0011223445566554 3344443333333333333333344444 4
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHh--hhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHH
Q 035636 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLE--AVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVV 387 (515)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (515)
+..-+..+.|+.+....+...++..+.|.+.||++..+++.. +....+++.....+... ....|....
T Consensus 300 ~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~----------~~~L~vp~~ 369 (464)
T KOG3764|consen 300 TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS----------IAQLWVPNF 369 (464)
T ss_pred hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh----------HHHHhhhhH
Confidence 456445588999999999999999999999999995444433 33333333333322211 122333333
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHH
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLE---TRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA-GIFFFFAAWIVVMG 462 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 462 (515)
..++.+........|....+ .+....+ ..|..+++......+|.+++|.+.|.+.+..|. +...+.+...++-+
T Consensus 370 ~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 370 GLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 33333333334444443333 3444444 678999999999999999999999999999984 33344444444333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-25 Score=213.74 Aligned_cols=379 Identities=13% Similarity=0.112 Sum_probs=245.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA------FHISMLILGRLALGIGVG 147 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~------~~~~~l~~~r~l~G~~~~ 147 (515)
+|+|..+++++.++. ....+++++.|+++||+|||+++.++.+++++++++++++ ++++.+++.|++.|+|.+
T Consensus 57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 399999999998874 4456778889999999999999999999999999999997 689999999999999999
Q ss_pred hhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHH-HHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc-c--ccCc
Q 035636 148 FANQAVPLFLSELAPAKIRGALNISFQLFITIGIFI-ANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM-S--ICET 223 (515)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~-~--~~es 223 (515)
...+.+...+.+|+| ++||++.++...+.++|.++ +++..+++. .+|+..|++.+++.++..++.. + .|++
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~ 210 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS----DNTSAYFFFLMSFALVVGILAIVFMRLPPF 210 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhheeCCcc
Confidence 999999999999997 67899999999999999976 555555543 3688888888888776555443 3 3444
Q ss_pred hhhHHhhCChHHHHHHHHHHhCCCc--------------------------------------chHHH-H--HH------
Q 035636 224 PTSLIERGRLEEGRVVLQRIRGVAN--------------------------------------VDNEF-D--SI------ 256 (515)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~-~--~~------ 256 (515)
+++..++++.++.++..++.++... ..... . ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~ 290 (591)
T PTZ00207 211 HLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIF 290 (591)
T ss_pred hhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4444344333333333222111100 00000 0 00
Q ss_pred -----------------------H---H---H-HHhhc-------c-cCcchhhhcccCCchhHHHHHHHHHHHHhhhHH
Q 035636 257 -----------------------V---H---A-CEMAN-------Q-VTKPFSKLMKRSSRPPLVIAILLQVFQQFTGIN 298 (515)
Q Consensus 257 -----------------------~---~---~-~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
. + + .+.+. + ......+-+.+..++..+|++++..++......
T Consensus 291 p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl 370 (591)
T PTZ00207 291 PFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHF 370 (591)
T ss_pred HHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchh
Confidence 0 0 0 00000 0 000011122223345678888888888888888
Q ss_pred HHHHhHHHHHHHc-CCCChh--HHHHHHHHHHHHHHHHhhHHHhhhccCch--------h-HHHhhhHHHHHHHHHHHHH
Q 035636 299 AIMFYAPVLFQTV-GFGSEA--SLLSAVITGLVNVFSTLVSVYAVDKAGRR--------A-LLLEAVVQMFITQSIIGII 366 (515)
Q Consensus 299 ~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~d~~~~~--------~-~~~~~~~~~~~~~~~~~~~ 366 (515)
.+...+.++.+.. |.+.+. ...+.+..++++.+|++..|.+.....+| + .+.+..+ +.++.+++...
T Consensus 371 ~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~ 449 (591)
T PTZ00207 371 VIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT 449 (591)
T ss_pred eeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH
Confidence 8888899999988 773333 23367888999999999999877222221 1 2222222 33333333332
Q ss_pred HHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 035636 367 LAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLV-AQAFLSMLCN 445 (515)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 445 (515)
. + ...+.+..++.+++++..+. +....++|+|. ++-|+-+-+.....-+|+.+. ..++|.++|.
T Consensus 450 ~----------p---~~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ 514 (591)
T PTZ00207 450 L----------P---KAALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQ 514 (591)
T ss_pred C----------C---ccHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12344444555555555543 44566789999 888888888877777887776 5678888875
Q ss_pred cc--------------chhhHHHHHHHHHHHHHHHhccccCCC
Q 035636 446 MK--------------AGIFFFFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 446 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
-. ...+.++++++.+..+....+..++++
T Consensus 515 ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 515 QADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred HHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 32 235666666666666665555545443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-24 Score=207.41 Aligned_cols=382 Identities=10% Similarity=0.052 Sum_probs=240.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 58999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCC---cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcccc----Cchh
Q 035636 153 VPLFLSELAPAKI---RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSIC----ETPT 225 (515)
Q Consensus 153 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----esp~ 225 (515)
..++++|++|+++ |+++.++.+.+.++|.++||.+++.+.+. .+||+.|.+.++..++..+...+.+ +.|+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN--YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999998764 88899999999999999999999999653 6899999998865555444333322 2221
Q ss_pred hHHhhCChHHHHHHHHH--------------HhCCCcchH-HHHH------HHHHHHhhcccCcchhhhcccCCchhHHH
Q 035636 226 SLIERGRLEEGRVVLQR--------------IRGVANVDN-EFDS------IVHACEMANQVTKPFSKLMKRSSRPPLVI 284 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
.. .+.+.++.+..... ....+.... .... .....+...++ ...+..+ .+...+.
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~l 275 (475)
T TIGR00924 201 VP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVAR--NKMYAYI 275 (475)
T ss_pred CC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHH--hHHHHHH
Confidence 00 00000000000000 000000000 0000 00000000000 0000101 1112233
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCCh----hHHHHHHHHHHHHHHHHhhHHHhhhccCc-----hhHH--Hhh
Q 035636 285 AILLQVFQQFTGINAIMFYAPVLFQT-VGFGSE----ASLLSAVITGLVNVFSTLVSVYAVDKAGR-----RALL--LEA 352 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-----~~~~--~~~ 352 (515)
.+.+.....+..+.......+.+.++ .+.+.. ..+++.++..+..++..++..++..|.+| +... .++
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 33344444444444445555655544 232211 25677777777777777665543333322 3333 566
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHH
Q 035636 353 VVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT 432 (515)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 432 (515)
.++.+++...+.+.... . +.....+.++.+....+...+-. ...|....+..+..|++.||+++|+......+|.
T Consensus 356 ~~l~~~~~~~~~~~~~~--~--~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF--A--DAGGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHhh--c--CCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 77776666666543211 0 01112345555566666665544 3457778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHHh
Q 035636 433 FLVAQAFLSMLCNMKAGI-FFFFAAWIVVMGLFAMF 467 (515)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (515)
.+++.+.....+..++.. +...+...++.+++.++
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999988887766655433 33334334444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=206.08 Aligned_cols=355 Identities=10% Similarity=0.073 Sum_probs=223.5
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFHISM-LILGRLALGIGVGFAN 150 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~ 150 (515)
++|++..+.+++.+.+.....+..+++|+++|| +||||+++.+.+++++++++++++++... ++++|+++|+|.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 358899999999999999999999999999999 99999999999999999999999877554 5589999999999999
Q ss_pred hhhhhhhhhccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHH
Q 035636 151 QAVPLFLSELAPAK--IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLI 228 (515)
Q Consensus 151 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~ 228 (515)
+...+++.|.+|++ +|++++++++.+.++|..+||.+++++.+. .|||+.|++.++..++..+...+.++..+...
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~--~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~ 201 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK--FGYSVTYNLCGAGLIIALLVYFACRGMVKDIG 201 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHcchhhcccC
Confidence 99999999999887 457799999999999999999999999765 68999999975543333333333332211000
Q ss_pred --hhCChHHHHHHH-------------HHHhCCCcchHHHHHHH---H---HHHhhcccCcchhhhcccCCchhHHHHHH
Q 035636 229 --ERGRLEEGRVVL-------------QRIRGVANVDNEFDSIV---H---ACEMANQVTKPFSKLMKRSSRPPLVIAIL 287 (515)
Q Consensus 229 --~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (515)
.++++.+..... .......+......... . ....+.+.+ +.+| +|.+....
T Consensus 202 ~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~----~~~r----~r~~~~~~ 273 (489)
T PRK10207 202 SEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD----KTGR----NKMFVAFV 273 (489)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC----HHHH----HHHHHHHH
Confidence 001001100000 00000000000000000 0 000001000 1222 23333222
Q ss_pred H--HHHHHhhhHHHHHHhHHHHHHH-c-----CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh-------HHHhh
Q 035636 288 L--QVFQQFTGINAIMFYAPVLFQT-V-----GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA-------LLLEA 352 (515)
Q Consensus 288 ~--~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~-------~~~~~ 352 (515)
+ .....+..+.......+.+.++ . |+.. ....+.....+..++..++.+++.||+++|+ .+..+
T Consensus 274 l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G 352 (489)
T PRK10207 274 LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLG 352 (489)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 1 1333333344444555666653 2 2211 2233444555667778888899999999886 36667
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHH
Q 035636 353 VVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT 432 (515)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 432 (515)
.++.+++.+.+...... .... ....+.++.+....+.+.+.... .|....++.+..|++.+|.++|+.+....+|+
T Consensus 353 ~~l~~~~~~~~~~~~~~-~~~~--~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~ 428 (489)
T PRK10207 353 MFLCSLGFLTAAAAGMW-FADA--QGLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAF 428 (489)
T ss_pred HHHHHHHHHHHHHHHHh-hcCC--CCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 67766665544322111 1100 01223444555555555555443 45656777889999999999999999999999
Q ss_pred HHHHHHHHHH
Q 035636 433 FLVAQAFLSM 442 (515)
Q Consensus 433 ~~~~~~~~~~ 442 (515)
.++..+....
T Consensus 429 ~lg~~l~~~~ 438 (489)
T PRK10207 429 LLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHh
Confidence 9988877544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-23 Score=199.29 Aligned_cols=370 Identities=9% Similarity=-0.015 Sum_probs=235.4
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHH--HHHHHHHHHHHHHhh-hhhhhh
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLF--TSCLYLAALIASFVA-SRVCSK 105 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~-g~l~dr 105 (515)
.+...++..|...+...+. +|.+.++. |.|.+++|++ .+++.+...+.++++ ++..||
T Consensus 5 ~~~~ly~~~g~~~~~~~p~--lp~~l~~~-----------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDA--LPTLLRED-----------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHHhHHHHHHHH--HHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3344567777776665433 35565554 8999999997 467788888888888 557999
Q ss_pred hcchHHHHHHHHHH-HHHHHHHH---hhhh-hHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHH
Q 035636 106 QGRRPTMQIASFFF-LVGVVLTS---AAFH-ISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIG 180 (515)
Q Consensus 106 ~Grr~~~~~~~~l~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (515)
+||||.+++.+.+. +++....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99999876665432 22222222 2222 3344555566667777788888888899998888888888899899999
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 035636 181 IFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHAC 260 (515)
Q Consensus 181 ~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
.++|+...+.+.+. .|||..|++.++..++..+..++++|+++. +++.++
T Consensus 146 ~~~g~~~~~~l~~~--~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~------------------------- 195 (390)
T TIGR02718 146 FFGGGAGTLVLFGK--FGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL------------------------- 195 (390)
T ss_pred HHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-------------------------
Confidence 99999888887554 689999999998887766655555443210 000000
Q ss_pred HhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHH-HHHHHHhhHHHh
Q 035636 261 EMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGL-VNVFSTLVSVYA 339 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l 339 (515)
++..+.++.+|++. .+......+...........+.+.++++.|+++++.+......++ ..+++.++.+++
T Consensus 196 ----~~~~~~~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l 267 (390)
T TIGR02718 196 ----ARRASLFRFFRRPL----AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWL 267 (390)
T ss_pred ----hhHHHHHHHHcCcC----HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00012334444322 333333333333344555567777888889999999998887764 667778999999
Q ss_pred hhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc-hhhh
Q 035636 340 VDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL-ETRT 418 (515)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~ 418 (515)
.||+++|+.+..+....++..+......... .............+.....+.... .......+..++ +.++
T Consensus 268 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g 339 (390)
T TIGR02718 268 VRRAGLWRTFILGVGLAGSLALLWFAQAAFW-------LAPGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAG 339 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchH
Confidence 9999999988876665533322222111000 001111112222222222222222 223333355554 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 035636 419 AGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGL 463 (515)
Q Consensus 419 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (515)
+.+++.+....+|..++|.+.|.+.+..|+...+..+.+..+.++
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887555555544444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=190.14 Aligned_cols=377 Identities=14% Similarity=0.133 Sum_probs=249.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhh----hhcchHHHHHH-HHHHHHHHHHHHhhhhhH----------------
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCS----KQGRRPTMQIA-SFFFLVGVVLTSAAFHIS---------------- 133 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~~~~~-~~l~~i~~~~~~~~~~~~---------------- 133 (515)
|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999998875 666667777777776643
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCc--chhhhHHHHHHHHHHHHHHHHHHHhh--ccC-----------CC
Q 035636 134 -MLILGRLALGIGVGFANQAVPLFLSELAPAKIR--GALNISFQLFITIGIFIANMVNYAMS--NVH-----------PY 197 (515)
Q Consensus 134 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~~l~--~~~-----------~~ 197 (515)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++... +.. ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333444557888888999999999998865 57999999999999999999998752 110 02
Q ss_pred chHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhccc
Q 035636 198 GWRLSLAIAGVPALFLCVGSM-SICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKR 276 (515)
Q Consensus 198 ~wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (515)
+.|..|++.++..++..+... +.+|.|... .++..++ +.++. ++.+.+..++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~~~~------~~~~~---------------~~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDFINS------EAAPP---------------SKHGEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccchhh------hcccc---------------cccchhhhHHHHHHH
Confidence 678999998888777666654 488876311 1100000 00000 000011123333332
Q ss_pred -CCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-c-CCCCh------h----HHHHHHHHHHHHHHHHhhHHHhhhcc
Q 035636 277 -SSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-V-GFGSE------A----SLLSAVITGLVNVFSTLVSVYAVDKA 343 (515)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~------~----~~~~~~~~~~~~~~~~~~~~~l~d~~ 343 (515)
+..++.++.+++..++.+.+...+..|.+.++.+ . +-++. + ..+......+...+.+++..++.+|+
T Consensus 253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1234667777777888888888888888777753 2 22211 1 22344455566667777888899999
Q ss_pred Cc-hhHHHhhhHHHHHHHHHHHHHHHHhcC--CC----CCC-cc-hhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc
Q 035636 344 GR-RALLLEAVVQMFITQSIIGIILAIWLK--PT----GSL-NK-VEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL 414 (515)
Q Consensus 344 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 414 (515)
|+ |+....+.++.++++....+......+ +. ... +. ...+..++.....+..++.. ..++++++++..|+
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~~ 411 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSSN 411 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHccc
Confidence 85 666677777777777666654321100 00 000 00 01244555555666665544 45788888999885
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHhccccCCC
Q 035636 415 --ETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK---AGIFFFFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 415 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
+..|..+|+.|.+..+...+.....|.+.+..| ...+.+-++..++.+++..+.+|+++.
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 456999999999999999999988888666665 334444445555666667777777653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=192.18 Aligned_cols=353 Identities=10% Similarity=0.058 Sum_probs=210.7
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAF-HISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~ 150 (515)
++|++..+.+++.+.+........+++|+++|| +|||+++..+.++.+++.+++++++ +.+.++++|+++|+|.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 358899999999888887777777899999999 5999999999999999999999874 56677789999999999999
Q ss_pred hhhhhhhhhccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc----cccCch
Q 035636 151 QAVPLFLSELAPAKI--RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM----SICETP 224 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~----~~~esp 224 (515)
+...+++.|++|+++ |..++++++.+.++|..++|.+++++.+. .|||+.|++.++..++..+... .++|.+
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~--~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK--YGWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 999999999998654 45688999999999999999999999654 6899999998765444333222 233321
Q ss_pred hhHHhhCChHHHHHHH------------HHHhCCCcchHHHHHH---HHHHHhhcccCcchhhhcccCCchhHHHHHHHH
Q 035636 225 TSLIERGRLEEGRVVL------------QRIRGVANVDNEFDSI---VHACEMANQVTKPFSKLMKRSSRPPLVIAILLQ 289 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (515)
+.. .+++.+...... .......+........ ........... ..++..++|....+.+.
T Consensus 209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 282 (500)
T PRK09584 209 SKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF-----AMKGAARRKMIVAFILM 282 (500)
T ss_pred CCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHH
Confidence 100 000011000000 0000000000000000 00000000000 00011122322222211
Q ss_pred HHHHhhhHHHHHHhHHHHHHH---cCCCC------hhHHHHHHHHHHHHHHHHhhH----HHhhhccCchhHHHhhhHHH
Q 035636 290 VFQQFTGINAIMFYAPVLFQT---VGFGS------EASLLSAVITGLVNVFSTLVS----VYAVDKAGRRALLLEAVVQM 356 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~~~----~~l~d~~~~~~~~~~~~~~~ 356 (515)
.....++......+..+.. .+.+. ...+...++..+..++..++. +++.+|.+..+.+.++..+.
T Consensus 283 --~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~ 360 (500)
T PRK09584 283 --LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLC 360 (500)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHH
Confidence 2222233333334433321 11111 124455556665556665555 55555666667778888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHH
Q 035636 357 FITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~ 436 (515)
+++.+.+....... +.....+.++.+....+.+.+- ....|....++.+..|++.||+++|+......+|+.++.
T Consensus 361 ~l~f~~l~~~~~~~----~~~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g 435 (500)
T PRK09584 361 SGAFLVLPLGAKFA----NDAGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAG 435 (500)
T ss_pred HHHHHHHHHHHHhc----CCCCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766543211 0001122344444444444443 344677788888999999999999988777777777776
Q ss_pred HHHH
Q 035636 437 QAFL 440 (515)
Q Consensus 437 ~~~~ 440 (515)
.+.+
T Consensus 436 ~~~~ 439 (500)
T PRK09584 436 YVAN 439 (500)
T ss_pred HHHH
Confidence 6664
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=194.07 Aligned_cols=335 Identities=12% Similarity=0.075 Sum_probs=219.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhh----hhcc-hHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHH
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCS----KQGR-RPTMQIASFFFLVGVVLTSAAFH------ISMLILGRLAL 142 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l~ 142 (515)
+|++..++|.+..+..+.-++..|+.|+++| |+|| |+.++.+....+++..++...++ +..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999 6799 56677788777777666544331 34566667777
Q ss_pred Hhhhhhhhhhhhhhhhhcc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc----cC-CCchHHHHHhhhHHHHHHHHh
Q 035636 143 GIGVGFANQAVPLFLSELA-PAKIRGALNISFQLFITIGIFIANMVNYAMSN----VH-PYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 143 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~----~~-~~~wr~~f~~~~~~~~~~~~~ 216 (515)
+++.....+...+++.|.. ++++|.+..++-..+.++|..+.+.+...+.. .+ ..+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999 58899999998777777776655554433211 11 136787777777776665444
Q ss_pred hc-cccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhh
Q 035636 217 SM-SICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFT 295 (515)
Q Consensus 217 ~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (515)
.+ ..+|.+.....+ .+++++.++++.++...+++.++.+.+..+....
T Consensus 197 ~~~~~~e~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~ 245 (473)
T PRK10429 197 TLRNVHEVYSSDNQV-------------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNI 245 (473)
T ss_pred HHcCceecCCccccc-------------------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 43 366643210000 0001123344444433333445555555554445
Q ss_pred hHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 296 GINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
.......+.+++.+....+....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~------ 319 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA------ 319 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 55555556666666553345556666677778889999999999999999999887776655554444322110
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 448 (515)
.....+..++...+.+.+.+.. .+..+++.+|..+ .+..|..+|....+..++..+++.+.|.+.+..|+
T Consensus 320 --~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 320 --APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred --CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1122333333334444444333 2445666778755 34456688999999999999999999999886653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=179.53 Aligned_cols=327 Identities=15% Similarity=0.096 Sum_probs=232.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhc-chHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQG-RRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|.|..|+|++.+...+...++++++|.++||++ +|+.+.+..++.++........++++.+++.-++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 5778878888887777777788899999888888888888888999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHH-HHHhhccCC-CchHHHHHhhhHHHHHHHHhhccccCchhhHHhhC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMV-NYAMSNVHP-YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERG 231 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l-~~~l~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~ 231 (515)
.++..+... ++++-.|-.....++|.+++... +..+....+ .+....+++.+...++.....+.+|+.|+. ++
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~ 187 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RS 187 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---cc
Confidence 999888876 34555667777777787777543 222322211 123345666666655555555667877621 00
Q ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc
Q 035636 232 RLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV 311 (515)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
..++ .++....+..+++|+ |.+..+.+..+...........+.+.++++.
T Consensus 188 ~~~~--------------------------~~~~~~~~~~~llk~----~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 188 AKES--------------------------VKKLLGLDALKLLKN----PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred cCCC--------------------------cccccchHHHHHhcC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 000001112234443 4355555555555556677888889999998
Q ss_pred C-CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH---HH
Q 035636 312 G-FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIV---VV 387 (515)
Q Consensus 312 g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 387 (515)
| .+....+...++..+..++.-...+++.+|+|.++++.++....++=..++.... ++.+... ++
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----------~~~~~~~~~~~l 306 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-----------DPWPFIVALQLL 306 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----------CCcHHHHHHHHH
Confidence 7 7778888888888899999999999999999999999999888887777766531 1111111 11
Q ss_pred HHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccc
Q 035636 388 LVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST-NMLFTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 448 (515)
...+.+..++..+. ....++.+..|++.|+++.++++.. ..+|..++..+.|++.|+.+.
T Consensus 307 ~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 307 GQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 12345555554433 3457778999999999999998876 568999999999999998873
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=187.23 Aligned_cols=328 Identities=13% Similarity=0.089 Sum_probs=209.6
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHH
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSK----QGRR-PTMQIASFFFLVGVVLTSAAFH------ISMLILGRLA 141 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l 141 (515)
++|+|..++|.+.++..+..++..|+.|+++|| +||| +.++.+....+++.++....++ ++.+++..++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 359999999999999999999999999999998 7874 5566777777777766555543 4566667777
Q ss_pred HHhhhhhhhhhhhhhhhhcc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc-----CCCchHHHHHhhhHHHHHHHH
Q 035636 142 LGIGVGFANQAVPLFLSELA-PAKIRGALNISFQLFITIGIFIANMVNYAMSNV-----HPYGWRLSLAIAGVPALFLCV 215 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-----~~~~wr~~f~~~~~~~~~~~~ 215 (515)
.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+... ...+|+..+.+.++++++..+
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 78777777778889999998 457799888888888888877776654333211 125799888888887766655
Q ss_pred hhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHh
Q 035636 216 GSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQF 294 (515)
Q Consensus 216 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (515)
..++ .+|.++.. +++ +.+..+..++.+++ +.++.+.+..+...
T Consensus 199 ~~~~~~~e~~~~~--~~~------------------------------~~~~~~~~~~~~~n----~~~~~l~~~~~~~~ 242 (444)
T PRK09669 199 CCFFMTKERYTPE--VDN------------------------------SSSVWKDLKLLLGN----SQWRIMFIFNVVLL 242 (444)
T ss_pred HHhCCeEEecCCC--CcC------------------------------CCCHHHHHHHHhCC----chHHHHHHHHHHHH
Confidence 4433 45432100 000 00001112233332 33444333333333
Q ss_pred hhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 035636 295 TGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (515)
..........+++.+..-.++...+.......+..+++.++.+++.||+|+|+....+.....+....+...
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-------- 314 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-------- 314 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 333333333444444332223333445555567778888999999999999998887765554433222221
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+....+...+..++.+.+.+.. .+..+++.+|..+ .+..|...|+.+.+..+|..+++.+.|.+.+..|
T Consensus 315 ---~~~~~~~~~~~~~i~g~~~~~~-~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 315 ---PPSNVWLIFALNILFNFIQNLT-TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223333444444455554433 4566777778774 3345778899999999999999999999998776
Q ss_pred c
Q 035636 448 A 448 (515)
Q Consensus 448 ~ 448 (515)
+
T Consensus 391 y 391 (444)
T PRK09669 391 Y 391 (444)
T ss_pred C
Confidence 4
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=168.71 Aligned_cols=367 Identities=11% Similarity=0.067 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhh
Q 035636 22 YVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASR 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~ 101 (515)
++...+...|+..|...++....+ ..+.+| +.|.+++.++..++.+.|++-..+-+++.|+
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~------alq~~f-------------k~d~ni~~akftLlYsvYSwPNvVlcffgGf 101 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPG------ALQIDF-------------KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGF 101 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCch------hhhhhh-------------hcccccceeeeeeeeeeccCCCEEEeeecce
Confidence 344445555565666555554432 233333 5666889999999999999999999999999
Q ss_pred hhhh-hcchHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHH
Q 035636 102 VCSK-QGRRPTMQIASFFFLVGVVLTS---AAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFI 177 (515)
Q Consensus 102 l~dr-~Grr~~~~~~~~l~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 177 (515)
+.|| +|.|..-++-+....++.++++ ..+.+|.+..+||+.|+|.-...++-+.+..-|+..||.+.++|+.....
T Consensus 102 lidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvA 181 (459)
T KOG4686|consen 102 LIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVA 181 (459)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHH
Confidence 9995 8888766666666667777666 46899999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHH--HhhhHHHHHHHHhhccccCchhhHHhhC-ChHHHHHHHHHHhCCCcchHHHH
Q 035636 178 TIGIFIANMVNYAMSNVHPYGWRLSL--AIAGVPALFLCVGSMSICETPTSLIERG-RLEEGRVVLQRIRGVANVDNEFD 254 (515)
Q Consensus 178 ~~G~~i~~~l~~~l~~~~~~~wr~~f--~~~~~~~~~~~~~~~~~~esp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
-+|..+-..+..++.+..+ ..| .....+.+...+-......+-.-....+ .++.+++.+++
T Consensus 182 R~GstvNf~lm~~ly~~~~----~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~------------ 245 (459)
T KOG4686|consen 182 RLGSTVNFLLMPFLYDTMG----RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL------------ 245 (459)
T ss_pred HhhceeeeeecHHHHHHHH----HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh------------
Confidence 9998877776666644211 000 0000011111000000000000000011 11112221111
Q ss_pred HHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHH
Q 035636 255 SIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFST 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++....+.....+ .....+.+|.+.+..++.......+....|.++++ .|+|+..++.+.+.......+.+
T Consensus 246 -----e~g~~Ge~pkLtd---v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~s 317 (459)
T KOG4686|consen 246 -----EEGFLGEEPKLTD---VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLS 317 (459)
T ss_pred -----hcCcccCCccccc---ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhh
Confidence 1111111111111 12223446666666666666677777788888765 59999999999999999999999
Q ss_pred hhHHHhhhccCchhHHHhhhHHHHH-HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCC
Q 035636 334 LVSVYAVDKAGRRALLLEAVVQMFI-TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETF 412 (515)
Q Consensus 334 ~~~~~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (515)
++.|.++||.|++-+.+.+..+..+ +-..+.+. ..+++ ..+++.+..++.... ..|..++.+.
T Consensus 318 pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft------------~lsPy---~~m~~lGLsysllAc-slWP~va~~v 381 (459)
T KOG4686|consen 318 PVFGAISDKYGFNLWWVASACILTLLGHSGLFFT------------FLSPY---TSMTFLGLSYSLLAC-SLWPCVASLV 381 (459)
T ss_pred hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh------------hccHH---HHHHHHhhhHHHHHH-HHhhhhhhhC
Confidence 9999999999999777655444333 33333331 12233 334444444443322 2255567888
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 413 PLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 413 p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
|.++.|++.|.++.+.++|-.+.|.+.|.+.|..|
T Consensus 382 pE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 382 PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred CHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 99999999999999999999999999999998877
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-21 Score=172.70 Aligned_cols=399 Identities=10% Similarity=0.072 Sum_probs=268.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHH
Q 035636 17 GRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIAS 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~ 96 (515)
.+..+++|..+++.++-.+..++...-++++ ....++| |+ +....-|+.-+|++.+....
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~----------------Yg-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSF----------------YG-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHH----------------hc-chHHHHHHHHHHHHHHHHHh
Confidence 4677788888888888777776555444333 2555555 35 67778899999999999999
Q ss_pred HhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh------hhhH--HHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcch
Q 035636 97 FVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA------FHIS--MLILGRLALGIGVGFANQAVPLFLSELAPAKIRGA 168 (515)
Q Consensus 97 ~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 168 (515)
+++-|+.|++|-|...+++..+.++|..+-..+ +.++ ....+..+.+.++-.....-..+..-|+++++|..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 999999999999999999999999999987776 2344 66678888888877777776778889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccC----CCchHH--HHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHH
Q 035636 169 LNISFQLFITIGIFIANMVNYAMSNVH----PYGWRL--SLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQ 241 (515)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~l~~~l~~~~----~~~wr~--~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~ 241 (515)
+..+-..+..+|.+++.++...+.... +..|.. .|+...+++.+.+.+..+ .++.|+......+..+
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~------ 250 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL------ 250 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh------
Confidence 999999999999999999988887654 245654 355444444443333322 3333321111100000
Q ss_pred HHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHH
Q 035636 242 RIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLS 321 (515)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (515)
. +.++.+-.++-.+++.+....+.+......++.....+...+...|++...+|..
T Consensus 251 --------------------~----~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~i 306 (480)
T KOG2563|consen 251 --------------------Q----DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYI 306 (480)
T ss_pred --------------------h----cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchh
Confidence 0 1122222222333355666666666666666666666554555558887889999
Q ss_pred HHHHHHHHHHHHhhHHHhhhccCch-hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccc
Q 035636 322 AVITGLVNVFSTLVSVYAVDKAGRR-ALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSW 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.....+++++++++.|.+.||.+.- ....+......++.+.+..... .....+ ++...+...+.+..+.
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~---------~~~~~v-iv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL---------FLGDSV-IVFTTCGLLGFFGTGY 376 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc---------cCCceE-ehhhhHHHHHHhhcCC
Confidence 9999999999999999999998754 4444444444444222222111 111222 2333333334445666
Q ss_pred ccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHHHhccccCCCC
Q 035636 401 GPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK----AGIFFFFAAWIVVMGLFAMFLLPETKGV 475 (515)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (515)
.|+...+..|..=|..-++..|+.+..+++.+++-..+.+...+..+ +...-+......+.......+.++..+|
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 78888888887655677889999999999999999999998888776 4444444444444444444455554444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=183.00 Aligned_cols=349 Identities=11% Similarity=-0.024 Sum_probs=221.6
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chHHHHHHHHHHH-HHHHHHHhhhhhHHHH-HHHHHHHhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQG-----RRPTMQIASFFFL-VGVVLTSAAFHISMLI-LGRLALGIG 145 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~~-i~~~~~~~~~~~~~l~-~~r~l~G~~ 145 (515)
++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++..... +.+++.+++
T Consensus 55 ~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 133 (468)
T TIGR00788 55 DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALA 133 (468)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 3499999999999999999999766 999999998 7777888877763 4433344445544444 488999999
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHH---HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQ---LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE 222 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~---~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (515)
.+...+++.++..|..+ +++....+... ....+|.++++.+++.+.+. .+||..|++.+++.++..+...+++|
T Consensus 134 ~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~--~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 134 KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK--TLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998 55544433333 33458999999999998654 68999999998888777666677788
Q ss_pred chhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHH-HhhhHHHHH
Q 035636 223 TPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQ-QFTGINAIM 301 (515)
Q Consensus 223 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 301 (515)
++.....+.+.++.... ........ +..++......+.+++ |.++...+..+. .........
T Consensus 211 ~~~~~~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~l~~~l~~----~~i~~~l~fifl~~~~~~~~~~ 273 (468)
T TIGR00788 211 RRAFVRPRIGTYLEMNM---------ALLTLGVL----ANVKVQILGLRGAIQL----LEIAKPLIFIFLSYANLPGASG 273 (468)
T ss_pred ccccccccccccchhhh---------hhhhhhHH----HHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHhhcCCCCc
Confidence 64110000000000000 00000000 0000000011122222 333322222222 111111111
Q ss_pred -HhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 035636 302 -FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKV 380 (515)
Q Consensus 302 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (515)
.+. ...+..|+++...|....+.+++.+++..+.++..+|++.|+.+.++.++..++..........+.... ...
T Consensus 274 ~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---gi~ 349 (468)
T TIGR00788 274 SVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---GIS 349 (468)
T ss_pred eeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc---CCC
Confidence 111 111346999999999999999999999999999999999999998888777766544322110000000 001
Q ss_pred hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 381 EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
..+.......+...+.+..+.|. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.+..|
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12223333344444445555555 5666899999999999999999999999999999999998887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-19 Score=170.10 Aligned_cols=363 Identities=14% Similarity=0.110 Sum_probs=244.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHH-HHHHHHHHHHhh-h-hhHHHHHHHHHHHhhhhhhhhhhhh
Q 035636 79 QFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASF-FFLVGVVLTSAA-F-HISMLILGRLALGIGVGFANQAVPL 155 (515)
Q Consensus 79 ~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~-l~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~ 155 (515)
+..++..++..+..++..|+.|.++|+-|+||.++.... +..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999998776655544 455566666663 3 4555555556666788888899999
Q ss_pred hhhhccCCCCc--------------------------chhhhHHHHHHHHHHHHHHHHHHHhhccCC------CchHHHH
Q 035636 156 FLSELAPAKIR--------------------------GALNISFQLFITIGIFIANMVNYAMSNVHP------YGWRLSL 203 (515)
Q Consensus 156 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~------~~wr~~f 203 (515)
++.|..+++++ ++..+.-.....+|.++.-.+...+....+ .+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 899999888888998888777655432221 2358888
Q ss_pred HhhhHHHHHHH-HhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhH
Q 035636 204 AIAGVPALFLC-VGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPL 282 (515)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (515)
.+.++.-++.. ...+++||.|+....++...-..... +...+.+|+..+.|.
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~---------------------------~~l~~t~k~~~~~~~ 282 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF---------------------------KRLWRTFKEIRKLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH---------------------------HHHHHHHHHHHhChH
Confidence 88888755544 44556888765211111100000000 011222333334456
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCch--hHHHhhhHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR--ALLLEAVVQMFIT 359 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~--~~~~~~~~~~~~~ 359 (515)
+..+++..++..-+...+......+.+ ..|++..+......+..+..++|+++.+++.||+|.| +.+........+.
T Consensus 283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 666777777777778888888888876 5699999999999999999999999999999999988 6666555444222
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.+.-.+... .... ...+.+...+...+.+...+. ..+...++.+++.|+++.+..+|++...+...++++|.++
T Consensus 363 ~~~g~~G~~--~~~~---g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 363 PLYGLFGFW--PSFF---GLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHhh--hccc---CcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222111000 0000 112233334444444444433 3456677889999999999999999999999999999999
Q ss_pred HHHHhhcc-chhhHHHHHHHHHHHHHHHhccccCCC
Q 035636 440 LSMLCNMK-AGIFFFFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 440 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
|.+.+..+ ....+....+.+++++++++.++..++
T Consensus 437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 437 GLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999987 444444444455555555555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=175.19 Aligned_cols=325 Identities=11% Similarity=0.010 Sum_probs=203.4
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh----hcchH-HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHH
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSK----QGRRP-TMQIASFFFLVGVVLTSAAFH------ISMLILGRLAL 142 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l~ 142 (515)
+|+++..+|.+..+.-+--++..|+.|+++|| +|||| .++++....+++.+++...++ +..+++.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 48999999999999999999999999999995 79865 555676777777766654442 34566677778
Q ss_pred HhhhhhhhhhhhhhhhhccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC-----CCchHHHHHhhhHHHHHHHHh
Q 035636 143 GIGVGFANQAVPLFLSELAP-AKIRGALNISFQLFITIGIFIANMVNYAMSNVH-----PYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 143 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-----~~~wr~~f~~~~~~~~~~~~~ 216 (515)
.++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.... ..+|+....+.+++.++...+
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999997 688999999999999998887777654433211 146888777777776665544
Q ss_pred hcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhh
Q 035636 217 SMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFT 295 (515)
Q Consensus 217 ~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (515)
.+. .+|.++. +. ++.+.++.++...+++.+..+....+....
T Consensus 200 ~~~~~kE~~~~---~~----------------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~ 242 (460)
T PRK11462 200 CFFTTKERVEA---PP----------------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNIL 242 (460)
T ss_pred HHhcceeccCC---Cc----------------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 433 4443210 00 001122222222222333333333333333
Q ss_pred hHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 296 GINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
..........++.+...-++...+.......++.+++.++++++.||+++|+....+.....+..+++.+.
T Consensus 243 ~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--------- 313 (460)
T PRK11462 243 AVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--------- 313 (460)
T ss_pred HHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---------
Confidence 33333333444444432223344556677788889999999999999999988765444333322222211
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
+....+...+..++.+.+. ....++.+.+..|... .+..|...+.......+|..+++.+.|.+.+..|
T Consensus 314 --~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 314 --PMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred --chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1122222222333333333 2223444556666654 3334566677778899999999999999887654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=178.29 Aligned_cols=325 Identities=10% Similarity=0.053 Sum_probs=200.4
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh----cchHHH-HHHHHHHHHHHHHHH-hh----h--hhHHHHHHHHH
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ----GRRPTM-QIASFFFLVGVVLTS-AA----F--HISMLILGRLA 141 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~~-~~~~~l~~i~~~~~~-~~----~--~~~~l~~~r~l 141 (515)
+|++..++|++.+...+..++..++.|+++||. ||||.+ ..+.....+..++.. .. + ..+.+++.-++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 488999999999999999999999999999996 777654 555555554444432 21 1 12334555677
Q ss_pred HHhhhhhhhhhhhhhhhhccCC-CCcchhhhHHHHHH-----HHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHH
Q 035636 142 LGIGVGFANQAVPLFLSELAPA-KIRGALNISFQLFI-----TIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCV 215 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~ 215 (515)
.+++.+...+...++..+..++ ++|.+..+.-..+. .+|..++|.++.........+|.....+.++++++..+
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877755 56887766655443 34556666666543211011222222233333333322
Q ss_pred hh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHh
Q 035636 216 GS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQF 294 (515)
Q Consensus 216 ~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (515)
.. ...||++.. +.+. ...++.++.++ ++|.++...+..++..
T Consensus 199 ~~~~~~~e~~~~---~~~~------------------------------~~~~~~~~~l~----~n~~f~~~~~~~~~~~ 241 (448)
T PRK09848 199 ICFKSTRENVVR---IVAQ------------------------------PSLKISLQTLK----RNRPLFMLCIGALCVL 241 (448)
T ss_pred HHHcCcEeccCC---CccC------------------------------CCHHHHHHHHh----CCchHHHHHHHHHHHH
Confidence 22 335554320 0000 00011123333 3344555555555555
Q ss_pred hhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 035636 295 TGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (515)
..........|+++++. |.++...++......++.+++.++.+++.||+++|+.+..+..+..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 55566666677777654 7666555554555467788899999999999999999998887777766555431
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCch-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 374 TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLE-------TRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+....+.......+.+.+.+... +...++.+|..|.+ .+|...|+.+....+|..+++.+.+.+.+..
T Consensus 315 ----~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 315 ----SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12223333333444444444333 34456666776643 4699999999999999999999999988766
Q ss_pred c
Q 035636 447 K 447 (515)
Q Consensus 447 ~ 447 (515)
|
T Consensus 390 G 390 (448)
T PRK09848 390 G 390 (448)
T ss_pred C
Confidence 5
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=178.86 Aligned_cols=327 Identities=13% Similarity=0.149 Sum_probs=243.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhh----hhcchHH-HHHHHHHHHHHHHHHHhh-h-------hhHHHHHHHH
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCS----KQGRRPT-MQIASFFFLVGVVLTSAA-F-------HISMLILGRL 140 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~-~~~~~~l~~i~~~~~~~~-~-------~~~~l~~~r~ 140 (515)
+++++...|++..+..+..++..|+.|.++| |+||||. ++.|..+.+++.+++... + ....+.+.-+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 4889999999999999999999999999999 8997654 556778888887777765 4 2345677778
Q ss_pred HHHhhhhhhhhhhhhhhhhccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-----CchHHHHHhhhHHHHHHH
Q 035636 141 ALGIGVGFANQAVPLFLSELAP-AKIRGALNISFQLFITIGIFIANMVNYAMSNVHP-----YGWRLSLAIAGVPALFLC 214 (515)
Q Consensus 141 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-----~~wr~~f~~~~~~~~~~~ 214 (515)
+..++.........++..|..+ +++|.+..+.-..+..+|.++...+...+.+..+ .+|++...+.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999997 4789999999999999988766666655543222 279999999988888777
Q ss_pred Hhhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHH
Q 035636 215 VGSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQ 293 (515)
Q Consensus 215 ~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (515)
++..+ .+|.++ + .++++++.++++.++...++|.+..+.+..++.
T Consensus 192 ~i~~~~~ke~~~------~----------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~ 237 (428)
T PF13347_consen 192 LITFFFVKERSV------E----------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQ 237 (428)
T ss_pred hhhhheeeeccc------c----------------------------ccccccccccccchhhhcccchHHHHHHHHHHH
Confidence 66654 666211 0 011122334444444444445566666666666
Q ss_pred hhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcC
Q 035636 294 FTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLK 372 (515)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (515)
..+........+++.+.. |.+ ...+.......+..+++.++.+++.||+|+|+....+..+.+++.+++.+..
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----- 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----- 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-----
Confidence 666666677777787775 554 5567777788899999999999999999999999999999888887776643
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 373 PTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL-------ETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
..+.+...+...+.+.+.+... ...+.+.+|..+. +..|...|+.+....++..+++.+.+.+.+.
T Consensus 312 ------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 312 ------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred ------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1344555566666666655443 5667777888763 4468899999999999999999999998877
Q ss_pred cc
Q 035636 446 MK 447 (515)
Q Consensus 446 ~~ 447 (515)
.|
T Consensus 385 ~G 386 (428)
T PF13347_consen 385 VG 386 (428)
T ss_pred hC
Confidence 65
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-18 Score=166.90 Aligned_cols=354 Identities=12% Similarity=0.074 Sum_probs=207.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-GRRPTMQIASFFFLVGVVLTSAAF-HISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 151 (515)
+|++..+.+.+.+.+.....++++++|+++||+ ||||++.++.++.+++.++.++.. +...++++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 488999999999999999999999999999999 999999999999999988776543 223344455555666777778
Q ss_pred hhhhhhhhccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCch-hhHH
Q 035636 152 AVPLFLSELAPAK--IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETP-TSLI 228 (515)
Q Consensus 152 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp-~~~~ 228 (515)
...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+. .||++.|.+.++..++..+..++..+.. +...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE--YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 8889999999875 689999999999999999999999999653 6899999987765444443332221110 0000
Q ss_pred hhCChHHHHHHHHHHh-------------CCCcchHHH-HHHHH---------HHHhhcccCcchhhhcccCCchhHH--
Q 035636 229 ERGRLEEGRVVLQRIR-------------GVANVDNEF-DSIVH---------ACEMANQVTKPFSKLMKRSSRPPLV-- 283 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (515)
.++++.+.++...... ......++. ....- -.....+ + .++..|+|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~er~r~~~~ 270 (493)
T PRK15462 198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRK------A-ENQKQRKELGLI 270 (493)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------c-CCHHHHhhHHHH
Confidence 0000000000000000 000000000 00000 0000000 0 0011122222
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHc------CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCc--h-----hHHH
Q 035636 284 IAILLQVFQQFTGINAIMFYAPVLFQTV------GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGR--R-----ALLL 350 (515)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~--~-----~~~~ 350 (515)
..+.+.....+..+......+..+.++. |++- ...+..++..+..++.+++..++-.|..+ | .-+.
T Consensus 271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa 349 (493)
T PRK15462 271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA 349 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 2222222222233333333333444332 3322 24566677777777777776666455422 1 1256
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHH-H
Q 035636 351 EAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTN-M 429 (515)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~ 429 (515)
++.++++++.+.+....... +.....+.++.+....+...+ .....|+..+.++++.|++.+|..+|+..... .
T Consensus 350 ~g~~~~g~~f~~l~~~~~~~----~~~~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~ 424 (493)
T PRK15462 350 LGLGLMSAGFCILTLSARWS----AMYGHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGA 424 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhc----CCCCCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 67777777776665543211 111123344444444444444 45667899999999999999999999986643 5
Q ss_pred HHHHHHHHHHHHH
Q 035636 430 LFTFLVAQAFLSM 442 (515)
Q Consensus 430 ~g~~~~~~~~~~~ 442 (515)
++..++..+.+..
T Consensus 425 ~~~~~~g~~~~~~ 437 (493)
T PRK15462 425 IANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-19 Score=165.53 Aligned_cols=331 Identities=14% Similarity=0.130 Sum_probs=243.5
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh----hcch-HHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHH
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSK----QGRR-PTMQIASFFFLVGVVLTSAAFH------ISMLILGRLA 141 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~~~~~~~l~~i~~~~~~~~~~------~~~l~~~r~l 141 (515)
.+|+++..+|.+..+.-+--++.-|+.|.++|| +||| +.++++.+..++.+.++-.+++ ....++.-.+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 358999999999999999999999999999995 8874 6677787888888888888763 4566677889
Q ss_pred HHhhhhhhhhhhhhhhhhccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc----C-CCchHHHHHhhhHHHHHHHH
Q 035636 142 LGIGVGFANQAVPLFLSELAP-AKIRGALNISFQLFITIGIFIANMVNYAMSNV----H-PYGWRLSLAIAGVPALFLCV 215 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~----~-~~~wr~~f~~~~~~~~~~~~ 215 (515)
.+++.......-.++..|+.+ ++||.+..++-+.+.++|.++...+...+... + ..||+..-.+.+++..+..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 57899999999999999876655554433321 1 36888888888888777766
Q ss_pred hhcc-ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHh
Q 035636 216 GSMS-ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQF 294 (515)
Q Consensus 216 ~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (515)
..++ .+|.+.. .+ ..++..+.++++.+....+++.+...++..++.+
T Consensus 202 ~~~~~v~ER~~~---~~-----------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~ 249 (467)
T COG2211 202 FCFFNVKERVVE---TQ-----------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLF 249 (467)
T ss_pred HHHHHhhcccCc---cc-----------------------------cCcccccccHHHHHHHHHccchHHHHHHHHHHHH
Confidence 6655 6665420 00 0001112334433332333344555555666666
Q ss_pred hhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 035636 295 TGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (515)
.+.+.......+|.+.. |.+.............+.+++.++..++.+|+|+|+....+.++..++.+++.+.
T Consensus 250 ~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~------- 322 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT------- 322 (467)
T ss_pred HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-------
Confidence 66666666667776654 7777788788888888888889999999999999999999988888888777764
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 374 TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-------LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+....+..++..++...+.+.. .++.+++.+|... .+..|...|...++.-+|.+++..+.|++.+..
T Consensus 323 ----~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 323 ----PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred ----cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2233444444445555555443 5688888888764 345588889999999999999999999999877
Q ss_pred c
Q 035636 447 K 447 (515)
Q Consensus 447 ~ 447 (515)
|
T Consensus 398 G 398 (467)
T COG2211 398 G 398 (467)
T ss_pred C
Confidence 6
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-19 Score=162.30 Aligned_cols=273 Identities=8% Similarity=0.004 Sum_probs=192.0
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC-----------
Q 035636 127 SAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH----------- 195 (515)
Q Consensus 127 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~----------- 195 (515)
+...+++.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|.+++|.+++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 355789999999999999999999999999999999999999999999999999999999999876321
Q ss_pred ---CCchHHHHHhhhHHHHHHHHhhcc--ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcch
Q 035636 196 ---PYGWRLSLAIAGVPALFLCVGSMS--ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPF 270 (515)
Q Consensus 196 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (515)
..+|+++|++.+.+.++..+.+.+ +||... ++.++. .+++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-------------------------~~~~-~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-------------------------SSGD-TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-------------------------cccc-ccch
Confidence 136999999776665554444433 444321 000000 0000 0001
Q ss_pred hhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH---cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchh
Q 035636 271 SKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT---VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRA 347 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (515)
++. .+++.++...+..++.......+..|.+.|+++ .|+++.+.+...+....+.++|+++++++.||+++|+
T Consensus 134 ~~~----~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSA----FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 111 223556666666677666778888999999964 3899999999999999999999999999999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH
Q 035636 348 LLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST 427 (515)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 427 (515)
.+..+..+..++.++.... +. ........+.+++.+..+ |.......+.+|+ ..+++.++. ..
T Consensus 210 ~l~~~~~l~~~~~~l~~~~------------~~--~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~-~~~~asai~-~~ 272 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT------------HG--YVAMWFVLALGLFNSIMF-PTIFSLALNALGR-HTSQGSGIL-CL 272 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc------------CC--HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh-hhhhhHHHH-HH
Confidence 8877766666554333221 11 111223334444444443 4545555677774 356677775 67
Q ss_pred HHHHHHHHHHHHHHHHhhccchhh
Q 035636 428 NMLFTFLVAQAFLSMLCNMKAGIF 451 (515)
Q Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~~ 451 (515)
+.+|+.+.|++.|.+.|..+....
T Consensus 273 ~~~Gg~i~P~l~G~lad~~g~~~a 296 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCLGIQLA 296 (310)
T ss_pred HHhcchHHHHHHHHHHHhccchHH
Confidence 789999999999999998874433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-19 Score=165.89 Aligned_cols=352 Identities=14% Similarity=0.124 Sum_probs=230.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH--HHHHH-HHhh----hhhH-HHHHHHHHHHhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFL--VGVVL-TSAA----FHIS-MLILGRLALGIGV 146 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~--i~~~~-~~~~----~~~~-~l~~~r~l~G~~~ 146 (515)
|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+.. .+... ..+. .|++ ..+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999997765544433222 22222 2222 2332 3333444445555
Q ss_pred hhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchh
Q 035636 147 GFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPT 225 (515)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~ 225 (515)
....|...+++.++. ++.+.-.|-.....++|.+++..++|.+.+ .+-+..|++....+++..++.++ -|+.++
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~---i~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN---INPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee---eCccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 556666667666654 334566788889999999999999999866 35678888877766665555444 333332
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
.....+.. ..++++.+.++..+. .+.|.+|.+.+........+..+....+
T Consensus 194 ~~~~~~~~----------------------------~~~~~~~~~~~~~~l-~k~~~fw~~~l~v~g~~~~Y~vfdqqf~ 244 (412)
T PF01306_consen 194 QAEVADAL----------------------------GAKKDKVSLKDVLSL-FKMRNFWFFVLFVIGVAAIYDVFDQQFP 244 (412)
T ss_dssp SS-SSTTS----------------------------SS------HHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccc----------------------------ccCCCCCcHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 001111223332222 3336677777766666566666666666
Q ss_pred HHHHHc----CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 035636 306 VLFQTV----GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVE 381 (515)
Q Consensus 306 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (515)
.|+... +.+....|.+.+...+..++.-.+..++.+|+|.|+.++++..++.+=..+.++. ..
T Consensus 245 ~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------------~~ 311 (412)
T PF01306_consen 245 IYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------------TN 311 (412)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------------S
T ss_pred HHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------------cc
Confidence 666654 3445667888888899999999999999999999999999888888877776653 34
Q ss_pred hHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHH
Q 035636 382 AIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFA-VSTNMLFTFLVAQAFLSMLCNMKA-GIFFFFAAWIV 459 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 459 (515)
++.....-.+.+.-+.....+. .-|+++.+|++..++...+. +....++..+.+.+.|.++|+.|. ..+++.+.+.+
T Consensus 312 ~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 312 PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 4556666666666665554433 56678999999999999886 567889999999999999999995 46777777777
Q ss_pred HHHHHHHhccccCCC
Q 035636 460 VMGLFAMFLLPETKG 474 (515)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (515)
...++..+.+++.++
T Consensus 391 ~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 391 PFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS--SSS
T ss_pred HHHHHheeeecCCCc
Confidence 777777776665444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-17 Score=147.54 Aligned_cols=353 Identities=12% Similarity=0.098 Sum_probs=241.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHhhhhhhhhh
Q 035636 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQI-ASFFFLVGVVLTSAAFH--I-SMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~ 152 (515)
+.+..+...++..+-.++-+|+.|.++|+.|+||.... ...+..++..+..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 55677888999999999999999999999997765554 44455566666666655 4 45555677888999999999
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHH--hhc--------------cCCCchHHHHHhhhHHHHHHHHh
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYA--MSN--------------VHPYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~--l~~--------------~~~~~wr~~f~~~~~~~~~~~~~ 216 (515)
..+++.+..++++-++..++-.....+|.++.-+.... ... .++.+=|..+.+.++-.++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888877777777777666555321 111 12245678888888876665544
Q ss_pred -hccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhh
Q 035636 217 -SMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFT 295 (515)
Q Consensus 217 -~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (515)
++..++.++-. ....++.. +..++ ..+.+++.++++.+..+.+..+...-
T Consensus 216 m~~~v~~~~~~~---~~~~~~l~------------~g~k~--------------L~~t~k~i~~~~~i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTALR------------NGFKE--------------LKSTFKEIRGRKNLVLFLIARFFYID 266 (438)
T ss_pred HHhccccccccc---ccchHHHH------------HHHHH--------------HHHHHHHHhcccchHHHHHHHHHHHh
Confidence 44466554310 00000000 00000 11112222333456666667776667
Q ss_pred hHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 035636 296 GINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374 (515)
Q Consensus 296 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (515)
+.+.+......+-. ++|++..+.........+..++|+++.|++.||++.|+++..+.++..+..+...+..
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-------
Confidence 77888888888876 6799999999999999999999999999999999999988887777666555544421
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhHH
Q 035636 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA-GIFFF 453 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 453 (515)
. .....++..+.+.+.+. ..+..-++..+.+|+++-++.+|+++..++..++++|...+.+.+.++. ...+.
T Consensus 340 ----~--~~~f~i~gll~g~s~G~-~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 340 ----G--ELDFWILGLLVGTSLGG-AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred ----c--cHHHHHHHHHHHHhcch-HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 1 12222222333333332 2345678888999999999999999999999999999999999998883 33344
Q ss_pred HHHHHHHHHHHHHhccccC
Q 035636 454 FAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (515)
..++.+..+++.++..|..
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 4444445555555555554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=155.43 Aligned_cols=402 Identities=12% Similarity=0.155 Sum_probs=236.3
Q ss_pred CccchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHH
Q 035636 15 FEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALI 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~ 94 (515)
.+++.+||...+.. +..++.+...+++.+ .+-++.++. |.+-+.+..|++.++..++.++
T Consensus 27 ~~~~t~wrsi~l~~---~~sfl~~v~~sI~~~--s~wpYl~~l---------------D~~A~~~ffG~viaa~slg~~i 86 (488)
T KOG2325|consen 27 DERKTNWRSIYLAL---LNSFLVAVQFSIYLT--SMWPYLQKL---------------DPTATATFFGLVIAASSLGHAI 86 (488)
T ss_pred cccCCchHhHHHHH---HHHHHHhhhheEEEe--ecchhhhhc---------------CCCCCcchhhHHHHHHHHHHHh
Confidence 44455666544433 335566666666543 334566554 2356888999999999999999
Q ss_pred HHHhhhhhhhhhcc-hHHHHHHHHHHHHHHHHH-Hhh---h-hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcch
Q 035636 95 ASFVASRVCSKQGR-RPTMQIASFFFLVGVVLT-SAA---F-HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGA 168 (515)
Q Consensus 95 ~~~~~g~l~dr~Gr-r~~~~~~~~l~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 168 (515)
+++..|+++.|.++ |+.++.|.++..+++++. ++. + .-+.++++|++.|+|.| ......+|+++....++|.+
T Consensus 87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPR 165 (488)
T ss_pred cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHH
Confidence 99999999999997 888999999999999988 433 3 56889999999999977 56778899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCCCc-----------hHHHHHhhhHHHHHHHHhhc-cccCchhhHHhhCChHHH
Q 035636 169 LNISFQLFITIGIFIANMVNYAMSNVHPYG-----------WRLSLAIAGVPALFLCVGSM-SICETPTSLIERGRLEEG 236 (515)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~-----------wr~~f~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~ 236 (515)
+++....+..+|.++||.++..+......| +..+-|+.+++.++.++... +++|.++....++..++
T Consensus 166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~- 244 (488)
T KOG2325|consen 166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV- 244 (488)
T ss_pred HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-
Confidence 999999999999999999988876644322 34566777777777666554 47776542211111000
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHH-HHHhHHHHHHHcCCCC
Q 035636 237 RVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINA-IMFYAPVLFQTVGFGS 315 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 315 (515)
++.+.+.++ .-+....+...+.+.+..+.....+.. -..+.+......+++.
T Consensus 245 -----------------~~~~~~~~~----------~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~ 297 (488)
T KOG2325|consen 245 -----------------EEEKSDIEK----------VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTG 297 (488)
T ss_pred -----------------hhhccchhh----------hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhcccc
Confidence 000000000 001111122233333333333333333 3333444445557766
Q ss_pred hhHHHH----HHHHHHHHHHHHhhHHHhh-hccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC--------CCc----
Q 035636 316 EASLLS----AVITGLVNVFSTLVSVYAV-DKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG--------SLN---- 378 (515)
Q Consensus 316 ~~~~~~----~~~~~~~~~~~~~~~~~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---- 378 (515)
+++... .++.++..+...+...... .++.+|..+..+......+..+..........+.. .+.
T Consensus 298 ~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~ 377 (488)
T KOG2325|consen 298 SEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS 377 (488)
T ss_pred chHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence 554333 3333333333333333222 33344555544433333333222222111111111 000
Q ss_pred -----chhhHHHHHH--HHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 035636 379 -----KVEAIIVVVL--VCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF 451 (515)
Q Consensus 379 -----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 451 (515)
...+...... ...++.++-....+. .++-+|...++.+++..++.......+..++|.+...+....|....
T Consensus 378 wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v 456 (488)
T KOG2325|consen 378 WCDTTTAVPLILYLISFIVVFGIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPV 456 (488)
T ss_pred hhccCcccChhhheeehhheeccccccccchH-HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHH
Confidence 0111111111 222222222222233 34447999999999999999999999999999999999888886666
Q ss_pred HHHHHHHHHHHHHHH
Q 035636 452 FFFAAWIVVMGLFAM 466 (515)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (515)
+....+.++.....+
T Consensus 457 ~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 457 WIILLCLLLVVAALW 471 (488)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555544444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=156.49 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=218.3
Q ss_pred HHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 035636 27 VIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~ 106 (515)
+.+.++..+.++...+.+...+ ..+.++| +++..+.|++.+.+-++..+...+..+..-|.
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~I--ttiErRF-----------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~ 159 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVI--TTIERRF-----------------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRG 159 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhh--hhhhhhc-----------------CCCCCcceeEeeecccchhhhhHhHHHhcccc
Confidence 3444455566665555444333 3555555 89999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh--------------------h---------------------------h----hH-H
Q 035636 107 GRRPTMQIASFFFLVGVVLTSAA--------------------F---------------------------H----IS-M 134 (515)
Q Consensus 107 Grr~~~~~~~~l~~i~~~~~~~~--------------------~---------------------------~----~~-~ 134 (515)
.|-+.+-+|+++++++++++++- + . ++ .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 99999999999999999999872 0 0 22 6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-----------------C
Q 035636 135 LILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP-----------------Y 197 (515)
Q Consensus 135 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-----------------~ 197 (515)
++++.++.|+|....++...+|+-|...+++-+..+|+..+...+|.++|.++++++.+... -
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 67789999999999999999999999999999999999999999999999999998865311 1
Q ss_pred chHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccC---cchhhhc
Q 035636 198 GWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVT---KPFSKLM 274 (515)
Q Consensus 198 ~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 274 (515)
.|..-|++.+.+.++..+.++++|+..+...++ .++++ .+....+++ ..+...... +.+.+.+
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~~~-~~~~k~~~~----------~~~~~~~~~~~ikdfp~s~ 385 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRARD-LHVLKTESG----------GAKSDKTFGKKIKDFPKSI 385 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chhhh-hcccccccc----------cccCCcchhhhHHHHHHHH
Confidence 377788888888888888888888764311110 00000 000000000 000000001 1222333
Q ss_pred ccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHH-HHHHHHHhhHHHhhhccC--chhHHH
Q 035636 275 KRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITG-LVNVFSTLVSVYAVDKAG--RRALLL 350 (515)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~l~d~~~--~~~~~~ 350 (515)
++...++.+....+...+....+.++..|+|.|++.+ |.++..+..+....+ .+..+|.+++|++.+|+. .|....
T Consensus 386 ~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~ 465 (735)
T KOG3626|consen 386 KRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAK 465 (735)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHH
Confidence 4556678899999999999999999999999999865 999999888885555 456677888999999975 344554
Q ss_pred hhhHHHHHHHHH
Q 035636 351 EAVVQMFITQSI 362 (515)
Q Consensus 351 ~~~~~~~~~~~~ 362 (515)
+..+...+.++.
T Consensus 466 ~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 466 FVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=158.98 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=138.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVL---TSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888889999999999999999999999998887654443332 22345677788899999988887777
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhh-
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIER- 230 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~- 230 (515)
....++.|.+|++.|++++++......++..++|.+.+++.+.. .+|+.++++..+++++.++..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 78888999999999999999755445556677888888775432 3578777777777777777777789999998765
Q ss_pred ----CChHHHHHHHHHHhCCCcchHHHHHHHH
Q 035636 231 ----GRLEEGRVVLQRIRGVANVDNEFDSIVH 258 (515)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
++.+|+++.++++++ +.+.|.+++++
T Consensus 441 ~~~~~~~~~a~~~l~~~~~--~~~~~~~~i~~ 470 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD--NIEQKIDDIDQ 470 (490)
T ss_pred cccccchhhHHHHhhcccc--cccchhhhccc
Confidence 889999999998874 34444444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-15 Score=138.90 Aligned_cols=386 Identities=16% Similarity=0.138 Sum_probs=229.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAF--HISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 150 (515)
+++++++..-+.+.|.--.-+..+++||++|| +|+|+++.+|.+++.+|.++.+.+. +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 68999999999999988888899999999999 8999999999999999999999984 78899999999999999999
Q ss_pred hhhhhhhhhccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc-----
Q 035636 151 QAVPLFLSELAPAK--IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET----- 223 (515)
Q Consensus 151 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es----- 223 (515)
+...+++.|.+|++ +|-..++++..+.++|.+++|++.+++.+. .||+..|.+.++-..+.++..+..+..
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 99999999999864 367789999999999999999999999665 789999999888777766655444321
Q ss_pred ----hhhHHhhCChHHHHHHHHHHhCC---C-cchHHHHHHHHH----HHh-hcccCcchhhhcccCCchhHHHH-----
Q 035636 224 ----PTSLIERGRLEEGRVVLQRIRGV---A-NVDNEFDSIVHA----CEM-ANQVTKPFSKLMKRSSRPPLVIA----- 285 (515)
Q Consensus 224 ----p~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 285 (515)
|..+..+............+... . ...++....... ... --.+...+.+.. ..|+|....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~er~r~~~~~~Lfl 291 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF--DERRRLLAAIPLFL 291 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH--HHHHHHHHHHHHHH
Confidence 11110111110000000000000 0 000000000000 000 000000000000 011122211
Q ss_pred -HHHHHHHHhhhHHHHHHhHHHHHHHc--CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCch-------hHHHhhhHH
Q 035636 286 -ILLQVFQQFTGINAIMFYAPVLFQTV--GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR-------ALLLEAVVQ 355 (515)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~-------~~~~~~~~~ 355 (515)
..+.+.+..-....+..|.....++. |++ ....+..+...+.-++.+++..++..+.+++ .-+-++...
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l 370 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLIL 370 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHH
Confidence 11112221112223333333332221 222 2234566666777777777777766664332 223445555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHH
Q 035636 356 MFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLV 435 (515)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~ 435 (515)
++.+.+++.......-.+ .+..+.++.+....+..++ .....|+..+++....|+...+..++........+..++
T Consensus 371 ~g~~fl~l~~~~~~~~~~---~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~ 446 (498)
T COG3104 371 AGLGFLILLLAGIWFGGP---SGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLG 446 (498)
T ss_pred HHHHHHHHHHHHHhhcCC---CCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555442211111 1223444444444444443 566678888999999999999999999988888888887
Q ss_pred HHHHHH------HHhhcc-chhhHHHHHHHHHHHHHHHhc
Q 035636 436 AQAFLS------MLCNMK-AGIFFFFAAWIVVMGLFAMFL 468 (515)
Q Consensus 436 ~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 468 (515)
..+.+. ..+... ...+...+.+..+........
T Consensus 447 g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 447 GQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred ceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 777662 222222 334445555555555544443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-19 Score=174.24 Aligned_cols=364 Identities=15% Similarity=0.157 Sum_probs=3.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh------------------------
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF------------------------ 130 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~------------------------ 130 (515)
+++..+.|++.+.+-++..+..++..++.+|..|-|.+-.|.++++++++++++-+
T Consensus 34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~ 113 (539)
T PF03137_consen 34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL 113 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999987610
Q ss_pred --------------------------hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHH
Q 035636 131 --------------------------HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIA 184 (515)
Q Consensus 131 --------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 184 (515)
-++.++++.++.|+|....++...+|+-|..++++-+..+|+..+...+|.++|
T Consensus 114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp --------------------------------------SSS---------------------------------------
T ss_pred ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence 135788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC----C----------------CchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHh
Q 035636 185 NMVNYAMSNVH----P----------------YGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIR 244 (515)
Q Consensus 185 ~~l~~~l~~~~----~----------------~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 244 (515)
.++++.+.+.. . -.|..-|++.+++.++..+.++++|+..+...+..+.++.+ .++
T Consensus 194 f~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~--~~~-- 269 (539)
T PF03137_consen 194 FLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESS--ERK-- 269 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhh--hcc--
Confidence 99998776431 0 12667777778877777777777776532110000000000 000
Q ss_pred CCCcchHHHHHHHHHHHh--hcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHH
Q 035636 245 GVANVDNEFDSIVHACEM--ANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLS 321 (515)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ 321 (515)
. .+.+.++..+..+. ..+..+.+...+++..+++.+....+..........++..+.|.|+|.. +.++.++..+
T Consensus 270 ~---~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l 346 (539)
T PF03137_consen 270 E---EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLL 346 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h---hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0 00000000000000 0111123333445566778899988888888888999999999999865 9998888877
Q ss_pred HHHHHH-HHHHHHhhHHHhhhccC--chhHHHhhhHHHHHHHHHHHHHHH--Hhc------C-CC---------------
Q 035636 322 AVITGL-VNVFSTLVSVYAVDKAG--RRALLLEAVVQMFITQSIIGIILA--IWL------K-PT--------------- 374 (515)
Q Consensus 322 ~~~~~~-~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~-~~--------------- 374 (515)
.....+ +.++|.+++|++.+|++ .|+.+....+...++.++...... ... + +.
T Consensus 347 ~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~ 426 (539)
T PF03137_consen 347 TGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCS 426 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCC
Confidence 765554 67788899999999985 445554444444444333111110 000 0 00
Q ss_pred --------------CCCcc---hhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHH-HHHHHHH
Q 035636 375 --------------GSLNK---VEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNM-LFTFLVA 436 (515)
Q Consensus 375 --------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~ 436 (515)
+.-+. ......++..++..+.......|.... .-..+|+++|+.+.|+...+.+ +|.+-+|
T Consensus 427 Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i-~LR~V~~~~rs~AlGv~~~~~rllg~IPgP 505 (539)
T PF03137_consen 427 CNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLI-TLRCVPPEQRSFALGVQWLIIRLLGFIPGP 505 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhee-eeccCChhhcchhhhHHHHHHHhhcCcchH
Confidence 00000 111222233333333333444455434 3488999999999999987765 4677899
Q ss_pred HHHHHHHhhc
Q 035636 437 QAFLSMLCNM 446 (515)
Q Consensus 437 ~~~~~~~~~~ 446 (515)
.++|.+.|..
T Consensus 506 IifG~iiD~t 515 (539)
T PF03137_consen 506 IIFGAIIDST 515 (539)
T ss_dssp ----------
T ss_pred HHHhHHHhhh
Confidence 9999999875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-14 Score=130.70 Aligned_cols=328 Identities=12% Similarity=0.048 Sum_probs=211.8
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chH-HHHHHHHHHHHHHHHHHhh-----h-------hh--
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQG-----RRP-TMQIASFFFLVGVVLTSAA-----F-------HI-- 132 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~-~~~~~~~l~~i~~~~~~~~-----~-------~~-- 132 (515)
|++++....+.+.+...+... ..+.+|+.||+.+ ||. -+..|..+...+..+.+++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 458888888999988888766 5888999999998 774 4555666666666655543 2 22
Q ss_pred --HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCch-HHHHHh--hh
Q 035636 133 --SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGW-RLSLAI--AG 207 (515)
Q Consensus 133 --~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~w-r~~f~~--~~ 207 (515)
....+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+.+. ++- |..-.+ .+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~--~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP--FSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc--cCHHHHHHHHHHHH
Confidence 23444667789999999999999999999999999999999999999999999998877442 332 222222 22
Q ss_pred HHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHH
Q 035636 208 VPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAIL 287 (515)
Q Consensus 208 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (515)
++.++..++..+=.|.++....+.+. +++....+.+++...++..++.+..+.
T Consensus 166 ~i~~~l~~ia~wg~E~r~~~~~~~~~---------------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPRRSRRAAAAE---------------------------RPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHhcccCCcccccCCC---------------------------CCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 22222222223322222100000000 000111123444444434344333333
Q ss_pred HHHHHHhhhHHHHHHhH-HHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhh-ccCchhHHHhhhHHHHHHHHHHHH
Q 035636 288 LQVFQQFTGINAIMFYA-PVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVD-KAGRRALLLEAVVQMFITQSIIGI 365 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~~~~~~~~~~~~~~ 365 (515)
+..+ .++.-...+ |+=-+-+|++..+...+....+.+.+++-...+++.. |.++++....+.....+++.++..
T Consensus 219 l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 LGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3222 222222222 3222345999999999999999999999989887765 678888888888888777777665
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 366 ILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
... ..+.+.......+++++.+....... +.+-++.++++.|..+|.......+...++..+.|.+.|-
T Consensus 295 a~~----------~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 295 AGP----------LGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHh----------cccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 22345555555555555444333332 3335888888999999999999999988888888887774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=138.55 Aligned_cols=318 Identities=13% Similarity=0.139 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh--hhhhhhhhhhhhhhccCCC
Q 035636 87 CLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIG--VGFANQAVPLFLSELAPAK 164 (515)
Q Consensus 87 ~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 164 (515)
...+...+.++..|.++||+|||..+...++...+..++..+.. +|.+ + +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchh
Confidence 44677889999999999999999999999999999888888766 3333 3 44432 3446677888999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHH
Q 035636 165 IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRI 243 (515)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~ 243 (515)
+|....++....+..+..++|.+++.+... .|.-..|.+..+..++..+.. .++||+-.. +++.+.. ....
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~~~---~~~~ 216 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSDAT---LREL 216 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccccc---cccc
Confidence 999999999999999999999999999765 678888999888888776655 458887431 1111000 0000
Q ss_pred hCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHH-HhhhHHHHHHhHHHHHH-HcCCCChhHHHH
Q 035636 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQ-QFTGINAIMFYAPVLFQ-TVGFGSEASLLS 321 (515)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 321 (515)
. .......+....++...+ ...+|..+.+.+..+. ...-.....-..+++.+ ..++++.+.+..
T Consensus 217 ~-------------~~~~~~~~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 217 T-------------PGSLDSSHVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred C-------------CCcccchhhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0 000000000111222222 2222333332222222 11111111102223333 349999999999
Q ss_pred HHHHHHHHHHHHhhHH-HhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccc
Q 035636 322 AVITGLVNVFSTLVSV-YAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSW 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.+..+....++.++.. .+...++.|+....+...-.+......+.. ..|........... ....
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~~v~~~~--~~~~ 347 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAAGVVVAL--AGIV 347 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHHHHHHHh--hcch
Confidence 9999999999998887 677778888888888888888877777642 22222222222222 2233
Q ss_pred ccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 401 GPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
.|...+..+....++.+|++.++...+..+.+.++|.+.+.+...+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555677778889999999999999999999999999999886543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=121.75 Aligned_cols=136 Identities=21% Similarity=0.354 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC
Q 035636 85 TSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAK 164 (515)
Q Consensus 85 ~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 164 (515)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccC
Q 035636 165 IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICE 222 (515)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (515)
+|++..++.+....+|..+++.+++.+.+. .+|++.+++.++..++..+...+ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF--LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999998654 68999999988887776655544 444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-12 Score=114.71 Aligned_cols=234 Identities=11% Similarity=0.093 Sum_probs=155.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|.+..|++.+....+...++..++.|.++||+|||+..++.+++.+++++. -..++++.++++|++.|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999864 455899999999999999999999988
Q ss_pred hhhh-hhccCCCCc----chhhhHHH-HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhh
Q 035636 154 PLFL-SELAPAKIR----GALNISFQ-LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTS 226 (515)
Q Consensus 154 ~~~i-~~~~~~~~r----~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~ 226 (515)
.++. .|.-..+.+ +..++... ...++-.+++..++-++.+..+.|-..+|....+..++..++... .+|.+..
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 8864 565322212 22222222 223333455555555555543345578898888877776665543 5554321
Q ss_pred HHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHH
Q 035636 227 LIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPV 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
..++....+ +-++.++.+.++ ++.+.+-.+..+.....+..+..|.|.
T Consensus 223 ~~~~~~~~~-----------------------------~~~~a~~~i~~d---~ril~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 223 TSSSSSLSG-----------------------------SFREAWRAILSD---PRILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred cccccchHH-----------------------------HHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHheeeeece
Confidence 000000000 000112222221 344555555666666667777778887
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc
Q 035636 307 LFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDK 342 (515)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 342 (515)
+-.+ -.....|++++-+.+..++|+.+..++..+
T Consensus 271 L~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 271 LDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred ecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7521 123346889999999999999988765544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-12 Score=118.97 Aligned_cols=345 Identities=10% Similarity=0.044 Sum_probs=223.0
Q ss_pred ccCCcchHH-HHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 74 CKYDNQFLQ-LFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 74 ~~~s~~~~g-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
.|++.+|+. -+.-...-.+....++...+.|..+.|++++++.+...+..++..+.++...+-+..++-|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 377777765 445555667778888999999999999999999999999999999999999999999999998775 677
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCC
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGR 232 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 232 (515)
..+++-...|+++-.++.+...++.-+|..++..+|-.+......+++..+.+......+.++..+++|..++...-+++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 88899888999988999999999999999999999998877666778888888777777777777888887764443333
Q ss_pred hHHHHHHHHHHhCCC-cchHHHH-HHHHHHH-hhcccCcchhh---hcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHH
Q 035636 233 LEEGRVVLQRIRGVA-NVDNEFD-SIVHACE-MANQVTKPFSK---LMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPV 306 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
.++.... ++....+ +...+.. +..+..+ .+...+..++. .++....++.++...+.+.....++..+..|...
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~ 272 (412)
T PF01770_consen 194 PPAEQDA-NESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQS 272 (412)
T ss_pred Ccccccc-ccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2221110 0000000 0000000 0000000 00000111111 1223334455666666666777788888889888
Q ss_pred HHHHc---CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 307 LFQTV---GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 307 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
+.++. +-...-.|.+-....+.+.++.+..|++..++.+...+..+......+.+++... .....|
T Consensus 273 LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-----------~t~~Iw 341 (412)
T PF01770_consen 273 LWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-----------FTGNIW 341 (412)
T ss_pred HHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHH
Confidence 88877 4444556788888888888999999998666665544444333333222222221 123456
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT 432 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 432 (515)
......+++...+.... ++....++.....+.-|..+|+.+++..+-.
T Consensus 342 v~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 342 VCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 66666666666665543 3333333444455556666676655544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=141.30 Aligned_cols=141 Identities=13% Similarity=0.026 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035636 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSEL 160 (515)
Q Consensus 81 ~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 160 (515)
..+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777899999999999999999999999999999999999999999888888999999998888999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCch
Q 035636 161 APAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETP 224 (515)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 224 (515)
+|.++|++++|+.+....+|.+++|.+++.+.. .+...+|++.++..++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~---~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVG---ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999988765 2456788888888777777777788864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-13 Score=127.99 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=123.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|++..+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+.++.+.+++.+++.+++.+...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888899999888888888999999999999999998888777666655555567788888889999998888877778
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE 222 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (515)
..+..|..|+ +|+++.++.+....+|..+++.+++.+.+. .+|+..|++.+++.++.++..++.||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888999986 589999999999999999999999999664 68999999988888887777766654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=131.46 Aligned_cols=148 Identities=13% Similarity=0.164 Sum_probs=127.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hhhhhccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCch
Q 035636 155 LFLSELAPAKIRGALNIS-FQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETP 224 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp 224 (515)
.++.|.+|++.|+...+. ++....+|.++++.+.+++.+. .||+..|.+.++..++..++.++ +++++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS--IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999998887655 6778889999999999999664 68999999988887665554443 44444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=130.03 Aligned_cols=148 Identities=13% Similarity=0.158 Sum_probs=126.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhhh
Q 035636 76 YDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF----HISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 76 ~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~ 151 (515)
++....+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877776632 346677889999999998889
Q ss_pred hhhhhhhhccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHhhccCC----CchHHHHHhhhHHHHHHHHhhcc-ccCc
Q 035636 152 AVPLFLSELAPAKIRGALNISFQ-LFITIGIFIANMVNYAMSNVHP----YGWRLSLAIAGVPALFLCVGSMS-ICET 223 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~----~~wr~~f~~~~~~~~~~~~~~~~-~~es 223 (515)
....++.|++|+++|+++.++.+ ...++|.++||.+++.+.+..+ +||+..|.+.++..++..++.++ ++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999997 6789999999999999876532 47999999988887776665544 6665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=125.65 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
+....+..+...........+.|.+.++.|.+..+.++..+...++.+++.++.|++.||+|||+.+..+..+..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444556667788888888999999999999999999999999999999999999999888777776665
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
.... .+.+...+...+.+.+.+.. .+....+..|.+|++.|+++.++.+....+|..+++.+.+.+
T Consensus 99 ~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 99 CALA-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHc-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 5442 12233334444444444333 345567788999999999999999999999999999999999
Q ss_pred HhhccchhhHHHH-HHHHHHHHHHHhccccCC
Q 035636 443 LCNMKAGIFFFFA-AWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 443 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 473 (515)
.+..++...+... ++..+...+.....|++.
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 8887755444443 444445555555566543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=124.79 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=120.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI--SMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~ 152 (515)
+.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 6788889999999999999999999999999999999999999998888887776643 33456778889988888888
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHH
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLC 214 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~ 214 (515)
...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||++.|.+.++..++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE--IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh--hchhhHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999998654 689999998887766643
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=120.42 Aligned_cols=348 Identities=13% Similarity=0.099 Sum_probs=204.2
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhc-----chHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHH
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQG-----RRPTMQIASFFFLVGVVLTSAA----FHISMLILGRLA 141 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~~i~~~~~~~~----~~~~~l~~~r~l 141 (515)
++++|+++.+.....++..+...+- ++.|.++|-+- ||+-++++.++.+++.+..+.. .+.....+.-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 3456999999999998888887765 66799999753 5556666777766655555553 346677777788
Q ss_pred HHhhhhhhhhhhhhhhhhccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 142 LGIGVGFANQAVPLFLSELAPA--KIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
..+|.......+.+++.|...+ ++|+...+.......+|.+++..++|.+.+. .+++..|.+.+++.++..+..++
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--FGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CCCeEEehHHHHHHHHHHHHHHH
Confidence 8999999999999999999843 3367777888888899999999999998654 67888898888777766655555
Q ss_pred ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHH-HHHHHhhhH-
Q 035636 220 ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILL-QVFQQFTGI- 297 (515)
Q Consensus 220 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 297 (515)
+.|+.+ ...+.+.....+ +..+......++ .-...++.++. +.++...+ ..+......
T Consensus 174 ~~~e~~-~~~~~~~~~~~~--------~~~~~~~~~~~~-------~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~~ 233 (433)
T PF03092_consen 174 LLEERK-VRPADEVFSFGK--------EEVPCLFGSFRE-------QLSELWRALQQ----RAIWQPILFFIFFFNLPPS 233 (433)
T ss_pred hhhhcc-ccccchhhcccc--------cccchhhHHHHH-------HHHHHHHHHhh----hHHHHHHHHHHHHHHhccC
Confidence 443211 000000000000 000000000000 00111222222 22222222 111111000
Q ss_pred --HHHHHhHHHHHHHcC---CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcC
Q 035636 298 --NAIMFYAPVLFQTVG---FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLK 372 (515)
Q Consensus 298 --~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (515)
....+|. ..+..+ +++...+....+..++.++|..+..+...+..-|+++....+...+..+.-.....-...
T Consensus 234 ~~~a~~fy~--~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~ 311 (433)
T PF03092_consen 234 ISSASSFYF--QTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNL 311 (433)
T ss_pred CCCccEEEE--EeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEee
Confidence 0100110 011224 888888888877788888888888777777777777765554443332221110000000
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 373 PTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
..+. ++. +..+.-..+........+.|.. .+++|+.|+..-|+.+++...+.++|..++..+...+.+..+
T Consensus 312 ~~Gi-~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 312 DLGI-PDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred eeCc-CCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 111 2222222333333334444553 445799999999999999999999999999999988887765
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=122.17 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=123.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+..+...+.++.+.+++.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899988888888888999999999999999999888877776666666778888888899999999998888888
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE 222 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (515)
.++.|..|++ |+++.++.+....+|..++|.+++.+.+. .||+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER--WSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHheecC
Confidence 9999998765 67999999999999999999999998654 68999999998888877776655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=116.38 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (515)
.+.+....+.+......-..+..-.|.+.++.++|..+.+.+.+.+.+..-++.++.|.++||.+.|..+..+++++++.
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 34455555666655555566777789998998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.+++++.. +.+...++..+-+.+.+.++.|..-+ +..-+|+++||+..++.|+..++|+.+.|++.
T Consensus 108 nil~Gfs~-------------s~~~~~~l~~lng~fQg~Gwpp~~~~-i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 108 NILFGFSP-------------SLFLFAVLWVLNGWFQGMGWPPCART-ITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHhhhh-------------HHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99998743 34556666666777777777666545 46999999999999999999999999999999
Q ss_pred --HHHHhhccch-hhHHHHHHHHHHHHHHHhccccCCC
Q 035636 440 --LSMLCNMKAG-IFFFFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 440 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
+.+..+.++. .++.-++++++.+++.++..+++.+
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8888777744 5566666667777777777665543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-12 Score=121.97 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 035636 80 FLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSE 159 (515)
Q Consensus 80 ~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 159 (515)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999999999999988888888888888888899999999999888888888889
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc
Q 035636 160 LAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223 (515)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 223 (515)
.+|+++|+++.++++....+|..+++.+.+.+.+. .||+..|++.++..++..+...++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW--FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998888654 689999999888877776666555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=121.52 Aligned_cols=143 Identities=23% Similarity=0.338 Sum_probs=133.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRP-TMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
.+++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|+..+.+.+++.++..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999653 68999999999998887776554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=118.64 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (515)
+.++.+.+..++...+......+.|.+++ +.|++..+.++..+...+..++++++.|+++||+|||+.+..+.....++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 33555666666666677777777877775 57999999999999999999999999999999999999998888777776
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.+++.+.. +.+..++...+.+.+.. ...+....+..|..|++.|+++.|+.+...++|..++|.+.
T Consensus 87 ~~~~~~~~-------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 87 FIAIPLVN-------------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHHHHHHh-------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554421 12223333333333322 23445567778999999999999999999999999999999
Q ss_pred HHHHhhccchh-hHHHHHHHHHHHHHHHhccccC
Q 035636 440 LSMLCNMKAGI-FFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 440 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
+.+.+ .++.. +...+++.++..++..+..++.
T Consensus 153 ~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 153 TLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98875 45443 3333333333333333434443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-12 Score=122.06 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHH
Q 035636 282 LVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361 (515)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (515)
.+....+..+...........+.|.+.++.|++..+.++..+...++..+++++.|++.||+|||+.+..+.+..+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 103 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI 103 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence 34444444444444445667788999999999999999999999999999999999999999999999988888887776
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035636 362 IIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLS 441 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 441 (515)
+..... +.+...+...+.+.+.+... +....++.|.+|+++|++++|+.+....+|..+++.+.+.
T Consensus 104 ~~~~~~-------------~~~~l~~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 104 LFGFSS-------------SLWAFALLWVLNAFFQGWGW-PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHHHh-------------HHHHHHHHHHHHHHHHHccc-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665421 22333333333444444333 4445677899999999999999999999999999999999
Q ss_pred HHhhccchhhHHH-HHHHHHHHHHHHhcccc
Q 035636 442 MLCNMKAGIFFFF-AAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 442 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 471 (515)
+.+..++...+.. +++.++..++..+.++|
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988886655444 33333343444444554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=122.87 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=123.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.....++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78889999999999999999999999999999999999888777777777777778888888888899998888888899
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcccc
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSIC 221 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (515)
+++.|.+|+++|+++.++.+....+|..++|.+++.+.+.. .+|...+++.....++..+..+++.
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999986532 3566677666666555555544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-11 Score=117.62 Aligned_cols=181 Identities=16% Similarity=0.053 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (515)
++.+....+.+++.......+....|.+.++.|++..+.++..+...++..+++++.|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34555555666665665666677778777888999999999999999999999999999999999999999888888887
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.++..+.. +.+...+.-.+.+.+.+.. .|....++.|.+|+++|+++.++.+....+|..+++.+.
T Consensus 87 ~~~~~~~~-------------~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 87 STATMFAT-------------GPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHhc-------------CHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766521 2233334444444444333 355556678999999999999999999999999999999
Q ss_pred HHHHhh------ccchhhH-HHHHHHHHHHHHHHhccccCCC
Q 035636 440 LSMLCN------MKAGIFF-FFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 440 ~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
+.+.+. .+|...+ +.++..++...+.++++||+++
T Consensus 153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 988752 3554444 4344444555555566676653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=118.13 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=125.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.+..+.|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh
Q 035636 155 LFLSELAPAKIRGALNISFQ-LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS 217 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~ 217 (515)
.++.+. |+++|++..++++ ...++|.++++.++|.+.+. .|+ ..|++.++++++..++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~--~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT--LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHHH
Confidence 999998 9989999999986 57889999999999999765 565 66777777776655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-11 Score=117.69 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=131.4
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHH
Q 035636 279 RPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFI 358 (515)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (515)
+++.+....+..+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33555566666666666667777778888888899999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQA 438 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (515)
+.++.... .+.+..+....+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+
T Consensus 90 ~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 90 GTLACGFA-------------PGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHHHh-------------ccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 76665542 12333344444444444433 34456667899999999999999999999999999999
Q ss_pred HHHHHhhcc--chhhHHHHHHHHHHHHHHHhccccC
Q 035636 439 FLSMLCNMK--AGIFFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 439 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
.+.+.+..+ +...+...++..+..++.....||+
T Consensus 156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998887665 5544444444444444444445553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=119.53 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035636 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSEL 160 (515)
Q Consensus 81 ~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 160 (515)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 46667778888899999999999999999999999999999888888888888888899999999998888888899999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc
Q 035636 161 APAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM 218 (515)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~ 218 (515)
+|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|.+.++..++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS--FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998664 6899999998888777666544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=116.98 Aligned_cols=175 Identities=11% Similarity=0.154 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-CchhHHHhhhHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA-GRRALLLEAVVQMFI 358 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~ 358 (515)
+.++..+.........++.+..++|.++.+ .|++..+++...........++.+++|+++||+ |||+.+..+.+...+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 445555555566666778888899988865 599999999999999999999999999999999 999999999888888
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCch--hhhhHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLE--TRTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~~~~~ 436 (515)
+.+++... ........+...+...+.+. ..+....+.+|.+|++ .|.++.++.+...++|+.++|
T Consensus 89 g~lll~~~------------~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap 155 (493)
T PRK15462 89 GHVVLGAS------------EIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAP 155 (493)
T ss_pred HHHHHHHh------------hcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHH
Confidence 87655431 11111122222222233322 2344456778999975 699999999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHhc
Q 035636 437 QAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFL 468 (515)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (515)
.+.+++.+..|+...+..+++..+.+++.++.
T Consensus 156 ~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 156 IACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888665555555454544444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-11 Score=116.06 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+..+...........+........|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 33444444444444455555566788888899999999999999999999999999999999999999998888777776
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
+..... .+.+...+...+.+.+.+.. .+....+..|.+|+++|+++.++.+....++..+++.+.+
T Consensus 85 ~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 85 LGLALS-------------NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHHHH-------------ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665542 12233333333444433333 3445667789999999999999999999999999999999
Q ss_pred HHHhhccchhh-HHHHHHHHHHHHHHHhccccCC
Q 035636 441 SMLCNMKAGIF-FFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 441 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
.+.+..++... +..++...+..+...+..||++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99888776544 3444444444444445555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=118.67 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=122.6
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (515)
...+....|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+.....++..+.....
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--------- 80 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--------- 80 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc---------
Confidence 34556667777788899999999999999999999999999999999999999888887777766665521
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH-H
Q 035636 377 LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFF-A 455 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 455 (515)
+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++...+.. +
T Consensus 81 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 81 ----AYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ----CHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 2344444445555554433 345567788999999999999999999999999999999998888876544444 3
Q ss_pred HHHHHHHHHHHhccccCCC
Q 035636 456 AWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (515)
+..++..++..+..+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHhhheecCCCC
Confidence 3334444444444555433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-11 Score=113.60 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 035636 299 AIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLN 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (515)
......|.+.++.|.++.+.++..+...++..++.+..|++.||+|||+.+..+.....++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788888899999999999999999999999999999999999999999988888777666552
Q ss_pred chhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh-HHHHHH
Q 035636 379 KVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF-FFFAAW 457 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 457 (515)
++.+..++.-.+.+.+.+. ..+....+..|.+|+++|+++.|+......++..++|++.+.+.+..++... +..+++
T Consensus 95 -~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred -ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 1233333333333333322 2344456678999999999999999999999999999999999888786544 444444
Q ss_pred HHHHHHHHHhccccC
Q 035636 458 IVVMGLFAMFLLPET 472 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (515)
.++.........|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 444444444445543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-12 Score=121.81 Aligned_cols=138 Identities=22% Similarity=0.203 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 035636 80 FLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSE 159 (515)
Q Consensus 80 ~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 159 (515)
..+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35667777888899999999999999999999999999888888888888888889999999999999999999999999
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 160 LAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
..|+++|++.+++.+....+|..+||.+++.+.+. .||+..|++.+++.++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN--YGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998654 68999999999888876665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=116.16 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=122.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|++..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+..++..
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 315 (394)
T PRK03699 236 FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTI 315 (394)
T ss_pred cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999998888777777777777888777788889999888888888
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcccc
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSIC 221 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (515)
.++..|..|++ +++..+.......+|..++|.+.+.+.+. .||+..+++.++..++..+....++
T Consensus 316 ~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 316 ITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAH--FGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHH--hCchhhhhhhHHHHHHHHHHHHHHH
Confidence 88888877644 67888889889999999999999999664 6899999988888777666554444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=107.38 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
...+.+.+..|......+.....+|.+-+++|.+..++|...+.+.++..++.++...+.+|+.||+.++....+..++.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 44666777777777788888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++..+.. +.+..++.=.+.+...+. +.++...+..++.|+++|+++.++.+....++..+|.++..
T Consensus 93 ~l~alAp-------------~f~~Ll~aR~~~g~a~G~-f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 93 LLSALAP-------------SFAVLLLARALAGLAHGV-FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHhc-------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 8887743 233444444444444433 34566778889999999999999999999999999999999
Q ss_pred HHHhhccch-hhHHHHHHHHHHHHHHHhccc
Q 035636 441 SMLCNMKAG-IFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 441 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 470 (515)
++-+..||. .|+..+.+.++..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999965 566667677777777777778
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=120.08 Aligned_cols=145 Identities=16% Similarity=0.075 Sum_probs=111.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVL--TSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
+|+|..+.++..+.+.++..++.+++|+++||+|||+.+..+..+..++..+ ....++.+...+.+++.|++......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 4889999999999999999999999999999999998877665544443322 22345666777888888865444443
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHhhcc----------CCCchHHHHHhhhHHHHHHHHhhc
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITI-GIFIANMVNYAMSNV----------HPYGWRLSLAIAGVPALFLCVGSM 218 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l~~~----------~~~~wr~~f~~~~~~~~~~~~~~~ 218 (515)
.......|.+|+++|+++.|+.+....+ |..++|.+.|.+.+. ...+|+..|++..+..++..+..+
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 3446677999999999999999988886 779999999998760 025799999888777776655544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-11 Score=113.23 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=121.9
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHH
Q 035636 288 LQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIIL 367 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (515)
...+....+........|.+..+.+.+..+.++..+...++.+++.++.|++.||+|||+.+..+..+..++..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666677888888899999999999999999999999999999999999999988887777666655543
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 368 AIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK 447 (515)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 447 (515)
.. ...+.+...+...+.+.+.+.. .+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus 86 ~~--------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 86 LL--------GGLNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred Hc--------CCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10 1113344444444444444333 44556778899999999999999999999999999999999998888
Q ss_pred chhhHHHHHHHHHHH
Q 035636 448 AGIFFFFAAWIVVMG 462 (515)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (515)
+...+....+..+..
T Consensus 157 ~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 157 IKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665444444433333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-11 Score=116.89 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=127.6
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
+|.+..+.|++.+...++..++.++.+++.||.++++.+..+..+.+++.++..+.++.+.+.++.++.|++.+...+..
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ 333 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999999888888888888888888888888888888889999999988888888
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHH-hhccccCch
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCV-GSMSICETP 224 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~esp 224 (515)
.+++.|..|++.|+++++++.....+|..+|+.+.+.+.+. .|++..+++.++..++..+ ....++|.+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM--MTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999999999999999999999999999999764 5788888777766555444 334456543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-11 Score=116.62 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=111.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA---A-FHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.+.. . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 666665555666667777888999999999999999999887766655443332 1 234444556677788888888
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQL-FITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 223 (515)
+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+++.+....+|+..+...++.+++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8889999999999999988888554 455899999999999866433468888888877777776666656654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=114.29 Aligned_cols=140 Identities=12% Similarity=0.161 Sum_probs=117.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+..+.++..+...++..+++++.|+++||+|+|+++..+..+..++.+... +........++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888899999999999999999999999999999999988888777665443 223445677888888788889999
Q ss_pred hhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 155 LFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
+++.|..|+++++...+......++|.++||.+++.+.+. .+|++.|.+.+...++..+..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN--YSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888888889999999999999999665 67999999988887766655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=118.94 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=117.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ--GRRPTMQI--ASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~~~~--~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
+.+..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.+++.+.++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 78999999999999999999999999999983 34443333 344445556666778899999999999999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHH
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCV 215 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~ 215 (515)
+...+++.|.+|++++++..++++....+|.++||.+++.+.+.. .+|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-CCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999886542 2599999998887666544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=110.06 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=112.0
Q ss_pred HHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 035636 299 AIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLN 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (515)
......|.+.++.|+++.+.++..+...++..+++++.|++.||+|||+.+..+..+.+++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44445777888889999999999999999999999999999999999999999998888876665442
Q ss_pred chhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 035636 379 KVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFF 454 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (515)
.+.+..++.-.+.+.+.+. ..+....++.|.+|+++|+++.++......++..++|.+.+.+.+..++...+..
T Consensus 106 -~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 2233444444444444443 2355567778999999999999999999999999999999999988886544444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=113.83 Aligned_cols=177 Identities=12% Similarity=0.127 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH---cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhhHH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQT---VGFGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAVVQ 355 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~~ 355 (515)
++.++.+....+....+++....++|.|+++ .|++..+++.......++..++.+++|++.|| +|||+.+..+..+
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~ 88 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIV 88 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHH
Confidence 3445666666666677788888899988865 69999999999999999999999999999999 8999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchh---hhhHHHHHHHHHHHHH
Q 035636 356 MFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLET---RTAGFAFAVSTNMLFT 432 (515)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~g~ 432 (515)
.+++.+++... + ..+...+...+.+.+.+. ..|....+.++.+|++. |+++.++.+...++|.
T Consensus 89 ~~~g~~~~~~~------------~-~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~ 154 (475)
T TIGR00924 89 LMLGHFMLAMS------------I-YPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS 154 (475)
T ss_pred HHHHHHHHHhc------------c-cHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence 88887766642 1 122233333333443332 33455666778888653 8889999999999999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccc
Q 035636 433 FLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
.++|.+.+.+.++.++...+...++..+.+++.++..+
T Consensus 155 ~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 155 FISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999888866555554444444444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=111.76 Aligned_cols=179 Identities=12% Similarity=0.150 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
|.+.......+....+........|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+.....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 44455555555566666667778898889999999999999999999999999999999999999999998887777776
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
.+.... .+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.+
T Consensus 83 ~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 83 LLCSLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHHHHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665442 12222333333333333322 2345667789999999999999999999999999999988
Q ss_pred HHHhhccchh-hHHHHHHHHHHHHHHHhccccCC
Q 035636 441 SMLCNMKAGI-FFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 441 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
.+.+..++.. ++..+.+..+..++..+..+|++
T Consensus 149 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 149 LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8877777644 44444445555555555566543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=113.89 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.+....+..+.............|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+....+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 33445555555555556666677788878889999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++..... +.+...+.-.+.+.+.+.. .+....++.|.+|++.|+++.++......+|..+++.+.+
T Consensus 98 ~~~~~~~-------------~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 98 GLSGLAS-------------GVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred HHHHHHh-------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence 7665532 2333444444444443332 3444566789999999999999999999999999999988
Q ss_pred HHHhhccchhhHHHHH
Q 035636 441 SMLCNMKAGIFFFFAA 456 (515)
Q Consensus 441 ~~~~~~~~~~~~~~~~ 456 (515)
.+.+..++...+....
T Consensus 164 ~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 164 SFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHcccCCHHHHHHHHH
Confidence 8888777655554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=116.72 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=120.2
Q ss_pred hhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 035636 295 TGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (515)
.....+....|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------
Confidence 3445666677888888899999999999999999999999999999999999999998888888777666532
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccchhh-H
Q 035636 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQ-AFLSMLCNMKAGIF-F 452 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-~ 452 (515)
+.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++. +.+.+.+..++... .
T Consensus 82 ------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 82 ------SLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred ------hHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 2333444444444443333 4556677889999999999999999999999999995 55555555565443 3
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 035636 453 FFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~ 473 (515)
..+.+.++..++..+..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCc
Confidence 344444444455555555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=114.04 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.++...+..+........+..+.|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34566666667666667778889999999999999999999999899999999999999999999999988777766666
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++.... .+.+...+...+.+.+.+.. .+....++.|.+|++.|+++.|+.+....++..++|.+.+
T Consensus 90 ~~~~~~-------------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 90 LFCALS-------------GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHh-------------CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 554331 12333344444444444333 3455666789999999999999999999999999999999
Q ss_pred HHHhhccchhhHHHH-HHHHHHHHHHHhcccc
Q 035636 441 SMLCNMKAGIFFFFA-AWIVVMGLFAMFLLPE 471 (515)
Q Consensus 441 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 471 (515)
.+.+..++...+... ....+..+......++
T Consensus 156 ~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 156 LLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988865444333 3333333333333443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=110.75 Aligned_cols=179 Identities=15% Similarity=0.064 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.++......+.............|.+.++.|.+..+.++..+...++..+++++.|++.||+|||+.+..+....+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 33455555555555555667778888889999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++.... ++.+...+...+.+.+.+.. .+....+..|.+|+++|+++.+.......++..+++++.+
T Consensus 83 ~l~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 83 AMFTLS-------------SSYLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHHHh-------------CcHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 766552 12333444444444443332 2344556678899999999999999999999999999999
Q ss_pred HHHhhccchhhHH-HHHHHHHHHHHHHhccccCC
Q 035636 441 SMLCNMKAGIFFF-FAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 441 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 473 (515)
.+.+..++...+. .+....+..+...+..||.+
T Consensus 149 ~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 149 YLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9888777654433 34333444344444566543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=114.77 Aligned_cols=167 Identities=15% Similarity=0.091 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.+..+.+..+.............|.+.++.|.+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 44555556666655666667777888888889999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
+++.... +.+...+...+.+.+.+.. .+....++.|.+|++.|+++.++.+....+|..+++.+.+
T Consensus 100 ~~~~~~~-------------~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 100 LACGFAP-------------GYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHh-------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666521 2233333444444433322 3344566789999999999999999999999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHH
Q 035636 441 SMLCNMKAGIFFFFAAWIVVM 461 (515)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (515)
.+.+..++...+....+..+.
T Consensus 166 ~l~~~~~w~~~f~~~~~~~~~ 186 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPIIF 186 (496)
T ss_pred HHhccCCHHHHHHHHHHHHHH
Confidence 998888766555544443333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=116.99 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
+..+.+..+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44455555555566677777889999999999999999999999999999999999999999999999888888777666
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
.... .+.+..++...+.+.+.+. ..+....++.|.+|++.|+++.++......+|..++|.+.+.+
T Consensus 84 ~~~~-------------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 84 CGVA-------------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HhCc-------------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 5542 1233334444444444332 3455567778999999999999999999999999999999999
Q ss_pred Hhhccchhh-HHHHHHHHHHHHHHHhccccC
Q 035636 443 LCNMKAGIF-FFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 443 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 472 (515)
.++.++... +..+.+.++..++..+..|++
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 888775543 333334444444444445553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-10 Score=113.06 Aligned_cols=177 Identities=15% Similarity=0.049 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHH
Q 035636 282 LVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361 (515)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (515)
.+...++..+....-...+..-.|.+.++.|.+..+.++..+.+.++...+.++.|++.||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44555566666666666777788999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccC-CCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 362 IIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSET-FPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
+.... .+.+..++.-.+.+.+.+.. .+.......+. .|+++|+++.|+......+|..++|.+.+
T Consensus 87 ~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 87 AAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76652 22333444444444444332 23333333344 47899999999999999999999999999
Q ss_pred HHHhhccchhhH-HHHHHHHHHHHHHHhccccC
Q 035636 441 SMLCNMKAGIFF-FFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 472 (515)
.+.+..+|...+ +...+.++..++..+..|+.
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988865443 33444444444445555554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=115.96 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.++...+...........+....|.+.+ .|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 105 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM 105 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence 44444444444443333444556676654 59999999999999999999999999999999999998888877777766
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
+++..... .....+...+...+.+.+.+..+. .....+.|.+|+++|+++.|+.+....+++.+++.+.+
T Consensus 106 ~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 106 LLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHhcccc---------ccchHHHHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 65543210 001122223333344444433333 33455679999999999999999999999999998887
Q ss_pred HHHhh-ccchhhH-HHHHHHHHHHHHHHhccccC
Q 035636 441 SMLCN-MKAGIFF-FFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 441 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 472 (515)
...+. .+|...+ ..++..++..++.++..+|+
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 65543 4554444 44444455455555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-10 Score=108.84 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=119.8
Q ss_pred HHHHHHhhhHHHHHHhHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHH
Q 035636 288 LQVFQQFTGINAIMFYAPVLF-QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGII 366 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (515)
...+....+.+....+.+.++ ++.|++..+.++......+...+.+++.|+++||++||+.+..+.....++.+.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 444444455566666666655 5669999999999999999999999999999999999999999888888877766542
Q ss_pred HHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 367 LAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
++.+...+...+.+.+.+. ..|....++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..
T Consensus 97 -------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 97 -------------HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred -------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 1233333444444443322 23444566789999999999999999999999999999999988 55
Q ss_pred cchh-hHHHHHHHHHHHHHHHhcccc
Q 035636 447 KAGI-FFFFAAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 447 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 471 (515)
++.. +++.+...++..++..+..|+
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6544 333333333333343444454
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=114.05 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=108.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHH--HHHHh--hhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV--VLTSA--AFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999998876655544433 22222 2466777788899999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHH-HHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHhhhHHHH
Q 035636 151 QAVPLFLSELAPAKIRGALNISF-QLFITIGIFIANMVNYAMSNVHPYG-WRLSLAIAGVPAL 211 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~~~-wr~~f~~~~~~~~ 211 (515)
+...+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.+. .| |+..++...+..+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM--TGDWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH--cCcchhHHHHHHHHHH
Confidence 99999999999999999999984 566778999999999998664 45 8877766665444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=114.26 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=107.8
Q ss_pred HHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 035636 300 IMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNK 379 (515)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (515)
+....|++.++ |++..+.++..+...++..+++++.|++.||+|||+.+..+..+.+++.+++.+... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~~ 117 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------AT 117 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------cc
Confidence 45567777666 999999999999999999999999999999999999999888887777766655321 01
Q ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhhccch-hhHHHHHH
Q 035636 380 VEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL-SMLCNMKAG-IFFFFAAW 457 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 457 (515)
...+...+...+.+.+.+... +.....+.+.+|++.|+++.|+.+....+|+.+.+++.+ .+....+|. .+++.+++
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122233333344444444333 333344568899999999999999988888755444432 332233443 34444444
Q ss_pred HHHHHHHHHhccccC
Q 035636 458 IVVMGLFAMFLLPET 472 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (515)
..+..++..++.+|+
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 444455555556654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=110.23 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=116.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF-HISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 78899999999999999999999999999999999999998888777766554333 32222 2346688888888877
Q ss_pred hhhhhhccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCch
Q 035636 154 PLFLSELAP-AKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICETP 224 (515)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~esp 224 (515)
.....+..+ +++|++..++.+....++..++|.+.+++.+.. .+|+..|.+.++.+++..+.. .+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-GNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 567899999999999999999999999997753 258888888777766655554 4466654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=113.35 Aligned_cols=150 Identities=19% Similarity=0.155 Sum_probs=112.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hh-H-HHHHHHHHHHhhhhh-h
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF--HI-S-MLILGRLALGIGVGF-A 149 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--~~-~-~l~~~r~l~G~~~~~-~ 149 (515)
|.+....++......++..++.++.|+++||+|||+.++.+..+.+++.++.+... +. + ....+.++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 66766677777788889999999999999999999999999999988887766432 21 1 223344444544443 3
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc----cCCCchHHHHHhhhHHHHHHHHhhc-cccCch
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSN----VHPYGWRLSLAIAGVPALFLCVGSM-SICETP 224 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~----~~~~~wr~~f~~~~~~~~~~~~~~~-~~~esp 224 (515)
.+...+++.|.+|+++|++++++......+|.++++.+...+.. .+..+|+..|++.++++++..++.+ +.||+.
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 36778999999999999999999999999999988776654431 1136788889888887777666554 466654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=109.88 Aligned_cols=158 Identities=6% Similarity=0.016 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
+.+....+..+....+......+.+.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 34444555555555555556667788888899999999999999999999999999999999999999998888877775
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHH-HHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFT-FLVAQAF 439 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~-~~~~~~~ 439 (515)
++...... ...+.+...+...+.+.+.+.. .+.......+.+|+++|++++|+.++...+|. .++|.+.
T Consensus 93 ~~~~~~~~---------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 93 AAFIVFGL---------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred HHHHHHhc---------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54422110 1112233333333333333322 22333445688899999999999999999886 5788888
Q ss_pred HHHHhhccc
Q 035636 440 LSMLCNMKA 448 (515)
Q Consensus 440 ~~~~~~~~~ 448 (515)
+.+.+..++
T Consensus 163 ~~l~~~~g~ 171 (402)
T TIGR00897 163 SYAIPAFGE 171 (402)
T ss_pred Hhcccccch
Confidence 888877663
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-10 Score=108.79 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
++.+.+..+....+........+.+.++.+.++.+.++....+.+...+..++.|++.||++||+++..+..+.+++.++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 44455555554444444555556667788888889999999999999999999999999999999999998888776655
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
+.... .. .+...+.+.+. ....|....++.|.+|+++|+++.|+.+....++..++|.+.|.+
T Consensus 85 ~~~~~-------------~~---~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 85 MLFGI-------------HP---LLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHH-------------HH---HHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 11 22222333333 334567678889999999999999999999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHhccccC
Q 035636 443 LCNMKAGIFFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
.+.. +...+.......+...+..+.+||.
T Consensus 148 ~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 148 ADPH-AEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8865 2222222222223333444556654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=109.74 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=120.3
Q ss_pred HHHHhhhHHHHHHhHH-HHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHH
Q 035636 290 VFQQFTGINAIMFYAP-VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILA 368 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (515)
.+.............| .+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-- 82 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--
Confidence 3334444555666677 6667779999999999999999999999999999999999999998888888884444421
Q ss_pred HhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035636 369 IWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 448 (515)
.+.+..++...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++
T Consensus 83 -----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 83 -----------SNFWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred -----------hhHHHHhhhcccccccccc-ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 1223444444445544433 3455677788999999999999999999999999999999999877775
Q ss_pred hh-hHHHHHHHHHHHHHHHhcccc
Q 035636 449 GI-FFFFAAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 449 ~~-~~~~~~~~~~~~~~~~~~~~~ 471 (515)
.. +++.++..++..++...+.++
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccccccchhhhhhhhHhhhhhh
Confidence 44 444444444444433344443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-10 Score=108.21 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
.+....................|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333333333344444445578888889999999999999999999999999999999999999998887777766655
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
.... .+.+..++...+.+.+.+.. .+....+..|.++.+.++.+.++.+....++..++|.+.+.+
T Consensus 90 ~~~~-------------~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 90 ALFA-------------HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHH-------------ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 12223333333333333222 234455667888888999999999999999999999999998
Q ss_pred HhhccchhhHHH-HHHHHHHHHHHHhccccCC
Q 035636 443 LCNMKAGIFFFF-AAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 443 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 473 (515)
.+..++...+.. ++...+...+..+..||++
T Consensus 156 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 156 TTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 887776544433 3333444444445556643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=115.21 Aligned_cols=148 Identities=14% Similarity=0.024 Sum_probs=115.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----h------hhHHHHHHHHHHH
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-----F------HISMLILGRLALG 143 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-----~------~~~~l~~~r~l~G 143 (515)
|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999988888877776621 1 2223333333333
Q ss_pred hhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccC
Q 035636 144 IGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICE 222 (515)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (515)
.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+.+. .+|++.|++.++++++..+..++ .||
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES--IGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccceehhHHHHHHHHHHHHheeccc
Confidence 333334466677889999999999999999999999999999998888554 57999999988888777666544 565
Q ss_pred ch
Q 035636 223 TP 224 (515)
Q Consensus 223 sp 224 (515)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 43
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-10 Score=109.33 Aligned_cols=177 Identities=11% Similarity=0.143 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhhHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAVVQMFI 358 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~~~~~ 358 (515)
+.++..+...+....+++....+++.|++ +.|++..++.+....+.....+..+++|+++|| +|||+.+..+..+..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 44555555556666777878877777765 469999999888888888888888899999999 9999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCch--hhhhHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLE--TRTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~~~~~ 436 (515)
+.+++.+.. .......+...+.+.+.+. ..|....++.|.+|++ .|+.+.++.+...++|..++|
T Consensus 94 g~~~~~~~~------------~~~~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 94 GYFMTGMSL------------LKPDLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHhc------------cchhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 887776531 1111222333333333333 3345567788999877 457789999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHhccc
Q 035636 437 QAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
.+.+++.++.||...+....+..+..++.+...+
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998876555555444444444444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=108.04 Aligned_cols=138 Identities=13% Similarity=0.056 Sum_probs=117.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+..+.+++.++.+++++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHh
Q 035636 155 LFLSELAPAKIRGALNISFQ-LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~ 216 (515)
.++.+. +++++++..+..+ ....+|..+||.++|.+.+. .|+ ..|+..+++.++.+++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~--~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH--LGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHH
Confidence 998887 5566788888876 55678889999999999764 466 4666666666554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-10 Score=106.95 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHH-HHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPV-LFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQS 361 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (515)
++..++..+...........+.|. +.++.|+++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344555555656666777888885 5577899999999999999999999999999999999999999998888888877
Q ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035636 362 IIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLS 441 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 441 (515)
++.... .+.+...+...+.+.+. ... +....++.|.+|+++|+++.++......+|..+++.+.+.
T Consensus 83 ~~~~~~------------~~~~~~~~~~~~~g~~~-~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 83 WAGLAV------------QSYSVLLLLRLFIGIAG-GSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHh------------hhHHHHHHHHHHHHHhc-hhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 665532 02233333333334332 222 2345667899999999999999988888888888777766
Q ss_pred HHh
Q 035636 442 MLC 444 (515)
Q Consensus 442 ~~~ 444 (515)
+..
T Consensus 149 l~~ 151 (366)
T TIGR00886 149 IIG 151 (366)
T ss_pred HHH
Confidence 654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=108.60 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=116.1
Q ss_pred cCCcchHHHHHH-HHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHH---Hhh-hhhHHHHHHHHHHHhhhhhh
Q 035636 75 KYDNQFLQLFTS-CLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLT---SAA-FHISMLILGRLALGIGVGFA 149 (515)
Q Consensus 75 ~~s~~~~g~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~-~~~~~l~~~r~l~G~~~~~~ 149 (515)
|.+..+.++... ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 5668999999999999999999998877766655544332 232 35555555667766666666
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE 222 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (515)
.+...++..+..+++.+++..++.+...++|.++++.++|.+.+. .||+..|.+.++.+++..+...++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~--~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA--HGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788899999999999999999999999999888888888664 68999999999888887776665554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=108.47 Aligned_cols=146 Identities=11% Similarity=-0.022 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
+....+..+...........+.|.+.++.|++..+.++..+...++..++.++.|++.||+|||+.+..+.+..+++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33333344444444455566677888889999999999988889999999999999999999999988877777766655
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
..... +.+...+...+.+.+.+. ..+ ...+++|.+|++.|+++.|+.+....+|+.+++.+.+.+
T Consensus 118 ~~~~~-------------s~~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 118 MSLVS-------------SATGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHhc-------------CHHHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54421 122222333333333322 222 234567999999999999999888888888877766554
Q ss_pred H
Q 035636 443 L 443 (515)
Q Consensus 443 ~ 443 (515)
.
T Consensus 183 ~ 183 (476)
T PLN00028 183 F 183 (476)
T ss_pred H
Confidence 3
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-10 Score=106.28 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=114.9
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (515)
...+....|.+.++.|.+..+.++..+.+.++..++++..|++.||+|||+.+.........+.. ...
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~----------- 74 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL----------- 74 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-----------
Confidence 34566678888889999999999999999999999999999999999998876544333333221 111
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH-H
Q 035636 377 LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFF-A 455 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 455 (515)
...+.+..++.-.+.+.+.+. . +......+|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|...+.. +
T Consensus 75 -~~~~~~~l~~~R~l~G~g~~~-~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 75 -DPFNYEWLLACQLLAALGQPF-L-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred -HhccHHHHHHHHHHHHhHhHH-H-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 111233344444444444332 2 22334447899999999999999999999999999999999888887755544 5
Q ss_pred HHHHHHHHHHHhccccCC
Q 035636 456 AWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (515)
++.++..++.++.+||.+
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 555555666666677653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-10 Score=108.20 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=133.0
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcch--HHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHH
Q 035636 72 NYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRR--PTMQIASFFFLVGVVLTSA--------AFHISMLILGRLA 141 (515)
Q Consensus 72 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~~~~~~~l~~i~~~~~~~--------~~~~~~l~~~r~l 141 (515)
+++|++..+...+.-+..+..++|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-++
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~ 389 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL 389 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence 35699999999999999999999999999999999999 8999999888666666555 6788899999999
Q ss_pred HHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcccc
Q 035636 142 LGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSIC 221 (515)
Q Consensus 142 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (515)
.|++.|..++.+.++.+|..|+++.+..+|++....-....+||++.+.+.+.. .+-|+.+....++.++.+++..+++
T Consensus 390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-g~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-GSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999998765 3578888888888777777776655
Q ss_pred Cc
Q 035636 222 ET 223 (515)
Q Consensus 222 es 223 (515)
.+
T Consensus 469 ~~ 470 (477)
T PF11700_consen 469 VE 470 (477)
T ss_pred ch
Confidence 43
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=106.40 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=113.0
Q ss_pred hHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhh
Q 035636 303 YAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEA 382 (515)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (515)
-+|.+.++.|.+....+...+.+.++..+++++.|+++||+|||+.+..+..+..++.++.... .+.
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------~~~ 104 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------------TSM 104 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------CCH
Confidence 3456667789999999999999999999999999999999999999998887777766655542 122
Q ss_pred HHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHH
Q 035636 383 IIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFF-FFAAWIVVM 461 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 461 (515)
+..++.-.+.+.+.+. ..+....+..|.+|++.++++.++.+....++..++|.+.+.+.+..+|...+ +.++..++.
T Consensus 105 ~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 105 TQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3333333444443322 23344566789999999999999999999999999999998888877765444 444443444
Q ss_pred HHHHHhccccCC
Q 035636 462 GLFAMFLLPETK 473 (515)
Q Consensus 462 ~~~~~~~~~~~~ 473 (515)
.+...+..||++
T Consensus 184 ~~~~~~~lp~~~ 195 (413)
T PRK15403 184 FVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhCCCCc
Confidence 433444566654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-08 Score=94.85 Aligned_cols=322 Identities=12% Similarity=0.099 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC
Q 035636 85 TSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAK 164 (515)
Q Consensus 85 ~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 164 (515)
.++-+....+++++.+.+.|+.|.|..+.++..++....+.+-+ +|-+.++++-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888889999999999999999999999999999988877766 56677888999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCC------CchH-H----------HHHhhhHH---HHHHHHhhccccCch
Q 035636 165 IRGALNISFQLFITIGIFIANMVNYAMSNVHP------YGWR-L----------SLAIAGVP---ALFLCVGSMSICETP 224 (515)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~------~~wr-~----------~f~~~~~~---~~~~~~~~~~~~esp 224 (515)
.+.+..++.-+....+.++|...-..+..... .+-+ . ...+.+++ ..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999999888888888776555433211 1121 0 11111111 111222222223211
Q ss_pred hhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhH
Q 035636 225 TSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYA 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
....++..+ ....+..+..++....++ .+.+...++.............
T Consensus 215 -~~~~~~~~~-----------------------------~~~~~~l~~~~~l~~~~~-ml~L~~~f~~tG~~~Sf~~~iy 263 (461)
T KOG3098|consen 215 -VVNCKSSSE-----------------------------TSFSELLKLTFKLLKTPK-MLLLFPFFFYTGLETSFWISIY 263 (461)
T ss_pred -hhhhhhhcc-----------------------------ccHHHHHHHHHHHhcCHh-HHHHHHHHHHHHHHHHHHHhcc
Confidence 000000000 000011122222222223 3333333333322222222223
Q ss_pred HHHH--H-HcCC-CChhHHHHHHHHHHHHHHHHhhHHHhhhc---cCchhHHHhhhHHHHHHHHHHHHHHHHhc--CCCC
Q 035636 305 PVLF--Q-TVGF-GSEASLLSAVITGLVNVFSTLVSVYAVDK---AGRRALLLEAVVQMFITQSIIGIILAIWL--KPTG 375 (515)
Q Consensus 305 ~~~~--~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 375 (515)
|.-+ . ..+. +....+......+++.+++....+.+.+| +|+++.+.++..+..+..++.-....... .+..
T Consensus 264 pt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~ 343 (461)
T KOG3098|consen 264 PTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTD 343 (461)
T ss_pred chhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCc
Confidence 3222 1 2222 23345556666778888888888877765 57888887777766666555544221100 0001
Q ss_pred CC---cchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 376 SL---NKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 376 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
+. ..+......+...+.+.+- ..+....+.++...+| +.|..+.++.-.-..+++.++-...+
T Consensus 344 ~~~~~~~~~~~~~~ii~~l~G~~D-~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 344 SPPLLFTPSYYLALIIGFLLGFGD-ACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred ccccccccchhHHHHHHHHHhhHH-HHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 10 0111223333333344333 3344555777778885 67788888877777766665544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-10 Score=107.06 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=119.1
Q ss_pred HHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 035636 298 NAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSL 377 (515)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (515)
.......|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..++..++....
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3445567788888899999999999999999999999999999999999999988888877777665421
Q ss_pred cchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh-HHHHH
Q 035636 378 NKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF-FFFAA 456 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 456 (515)
+.+...+...+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..++... +..+.
T Consensus 78 ---~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 78 ---TIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred ---cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 122333333334443332 2344456778999999999999999999999999999999999888776444 34444
Q ss_pred HHHHHHHHHHhccccC
Q 035636 457 WIVVMGLFAMFLLPET 472 (515)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (515)
+..+..++..+..+|+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 4444444444555554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-09 Score=104.43 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=104.3
Q ss_pred hHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhh
Q 035636 303 YAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEA 382 (515)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (515)
..|.+.++.|.++.+.++..+...++..++.++.|++.||++||+.+..+.....++.++.... .+.
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~ 94 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ESA 94 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cCH
Confidence 3344567779999999999999999999999999999999999999988877777666555442 122
Q ss_pred HHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHH
Q 035636 383 IIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFF-FAAWIVVM 461 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 461 (515)
+...+...+.+.+.+.. .+....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+. .+...++.
T Consensus 95 ~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 23333333333332222 22334566799999889999999888899999999999999998888655443 33333333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-09 Score=101.49 Aligned_cols=153 Identities=10% Similarity=0.033 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQ-TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFI 358 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (515)
+|.++...+.+...+..........+.+-+ +.|++..+.++..++..++..++++..|++.||+|.|+++..+..+..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 456666666666665555555555566555 6799999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQA 438 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (515)
..+...+.... ...+.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.+
T Consensus 113 ~~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 113 PCVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 77666553110 012233344444444443 3333 3455667899999999999999977777777666665
Q ss_pred HHHH
Q 035636 439 FLSM 442 (515)
Q Consensus 439 ~~~~ 442 (515)
.+.+
T Consensus 183 ~p~~ 186 (462)
T PRK15034 183 APLV 186 (462)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=105.30 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=114.8
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (515)
...+....|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444445667778889999999999999999999999999999999999999988887777776655442
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh-HHHH
Q 035636 377 LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF-FFFA 455 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 455 (515)
.+.+.......+.+.+.+.. .+.....+.|.+|++.|.++.++......++..++|.+.+.+.+..++... ++.+
T Consensus 99 ---~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~ 174 (406)
T PRK15402 99 ---QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFA 174 (406)
T ss_pred ---ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 12223333333333333222 244556667999999999999998888888999999999998887775544 3344
Q ss_pred HHHHHHHHHHHhccccCC
Q 035636 456 AWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (515)
++.++..+..++..||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 175 ALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 444444444444456543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=106.99 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=131.7
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHH
Q 035636 279 RPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFI 358 (515)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (515)
+++.+..+++.......+......-.+-++.+..-|+...+++.....+..++.++++|.+.||++||++++.+-...++
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRAL 87 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 33555555566666555555555556666666667788889999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQA 438 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (515)
..+.+.+.... ...+.+.++++.++.+.+. ....|...+++.|++|+++...+.++.+...++...+||.+
T Consensus 88 ~~~~L~~l~~~--------~~~~~~~Ll~~~fl~g~~~-a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 88 VALLLAVLAFF--------GLLSPWLLLILTFLLGIGS-AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 66666554431 2233444444444444443 33456777888999999999999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHhccc
Q 035636 439 FLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
.|.++...|....+.+-+++.+..+......+
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999988865555555555444444444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-09 Score=106.45 Aligned_cols=164 Identities=11% Similarity=0.058 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhhHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLF-QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAVVQMFI 358 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~~~~~ 358 (515)
+.++..+...++...+++.+..+++.++ ++.|++..+++..............+++|++.|| +|||+.+..+..+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3456666666666677788888888887 5579999888877777665556666789999999 5999999999888888
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchh--hhhHHHHHHHHHHHHHHHHH
Q 035636 359 TQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLET--RTAGFAFAVSTNMLFTFLVA 436 (515)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~g~~~~~ 436 (515)
+..++... ....+...+...+.+.+.+.. .+....+..|.+|++. +..+.++.+...++|..++|
T Consensus 101 g~~l~~~~------------~~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 101 GYALVAWS------------GHDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred HHHHHHHh------------cccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 76666542 111222223333344443332 3455566789988643 45678888999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHH
Q 035636 437 QAFLSMLCNMKAGIFFFFAAW 457 (515)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~ 457 (515)
.+.+++.+..++...+...++
T Consensus 168 ~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 168 LATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHHHHhhCHHHHHHHHHH
Confidence 999999998887655544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-09 Score=105.20 Aligned_cols=154 Identities=19% Similarity=0.141 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVF 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.+..+.++..+...++.+++.++.+++.||+|||+.+..+.++..++.++...... . .+....+..++.-.+.
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~------~-~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG------S-SPKSVMATLCFWRFWL 125 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC------c-ccchHHHHHHHHHHHH
Confidence 34456678889999999999999999999999999998888877777665554210 0 0001123444445555
Q ss_pred HHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hccch
Q 035636 393 VMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC-----------------------NMKAG 449 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~ 449 (515)
+.+.+.. .+....+.+|.+|++.|+++.++.+....+|..+++.+...+.. ..+|.
T Consensus 126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 5555443 34556888999999999999999999999999888887765532 12455
Q ss_pred hhHHHHHHHHHHHHHHHhccccCCC
Q 035636 450 IFFFFAAWIVVMGLFAMFLLPETKG 474 (515)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (515)
..+...++..+...+..+++||+.+
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 5555555555555555667788643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=109.89 Aligned_cols=138 Identities=22% Similarity=0.139 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035636 83 LFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHI--SMLILGRLALGIGVGFANQAVPLFLSEL 160 (515)
Q Consensus 83 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 160 (515)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445567778889999999999999999999999999988888777654 4555666777777888888889999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCch
Q 035636 161 APAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETP 224 (515)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 224 (515)
+|++.|++++++.+....+|.+++|.+.+ +.+ .++..++++.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE---KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH---HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999988 543 4577888888888888777777888864
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-10 Score=102.21 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=136.0
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
.+++|++..++.++.-...+..++|++++|+|.||+|.|+++..++++..+.++...+...-..+.++-.+.|...|..+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 34669999999999999999999999999999999999999999999999999888888777778888899999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 223 (515)
..+.++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..+ +-|.-+....++.++.+++..++|+.
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999999987663 57777777777777777776666654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=104.85 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=121.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+....|.+.+...+...++.++.|++.||+|||+.+.++..+.+++..+..+++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999888878889999999999999999877777777
Q ss_pred hhhhhccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh
Q 035636 155 LFLSELAPAKIRGALNIS-FQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS 217 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~ 217 (515)
.++.+..+++.++...+. .+....+|..+++.+++++.+. .||+..|.+.++..++..++.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~--~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS--IGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh--cccHHHHHHHHHHHHHHHHHH
Confidence 788888888888777666 6788999999999999999764 689999999888877765543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=111.08 Aligned_cols=150 Identities=11% Similarity=-0.021 Sum_probs=108.2
Q ss_pred HcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 035636 310 TVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLV 389 (515)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (515)
+.+++..+.+.+.+.+.++.++++++.|++.||+|+|+.+..+.++..++.++...... ...+..++.-
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----------GGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----------cCchHHHHHH
Confidence 45788889999999999999999999999999999999998888777776655543211 1122333344
Q ss_pred HHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhH-HHHHHHHHHHHHHHh
Q 035636 390 CVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM-KAGIFF-FFAAWIVVMGLFAMF 467 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 467 (515)
++.+.+.+. ..|....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ++...+ +.++..++..++.+.
T Consensus 139 ~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 139 VIQGLAQGS-VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHHHhccc-chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 444444433 34556677889999999999999999999999999999999998884 755444 444444444343434
Q ss_pred cccc
Q 035636 468 LLPE 471 (515)
Q Consensus 468 ~~~~ 471 (515)
..++
T Consensus 218 ~~~~ 221 (465)
T TIGR00894 218 FPAD 221 (465)
T ss_pred HhcC
Confidence 3443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=97.48 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (515)
++.++...+.....++..+.+....+.+-++.|+|+.|.+++.++..+.+.+.+++.|.+.||+|.|++...+.++..+-
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP 92 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP 92 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence 45566666665555555555555666666778999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.+.+.+... .++.+..+++..+.+.+ +..+ .....++++.+|++++|.+.|+.. .+++|..+...+.
T Consensus 93 ~~~~~~a~~----------~~~~~~ll~~gll~G~~-GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 93 CLGLAFAVT----------YPSTWQLLVIGLLLGLA-GASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHHHcc----------CCchHHHHHHHHHHhcc-ccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 777776542 22223333333333332 2222 344567789999999999999998 9999999999999
Q ss_pred HHHHhhcc---ch-hhHHHHHHHHHHHHHHHhccc
Q 035636 440 LSMLCNMK---AG-IFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 440 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 470 (515)
+.+....+ +. ...++....++..+..++...
T Consensus 160 P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 160 PLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888877 33 333444444444555555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=92.93 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=117.6
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHH
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-------FHISMLILGRLALG 143 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-------~~~~~l~~~r~l~G 143 (515)
++.+|+|.+|...+.+.-.+|..+| ++.|.+.|++|+|.++.+|.+...+|..+..++ .++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 3345999999999999999999875 889999999999999999999999998887764 46788888888888
Q ss_pred hhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCc
Q 035636 144 IGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICET 223 (515)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 223 (515)
.+.+.....+.....+.+|. +||++.++.-...+++..+-..+...+... ..-+..+++...+.++.++...++++.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred ccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 88777777777777788985 699999999999999988877776666332 234455555555555555555555544
Q ss_pred h
Q 035636 224 P 224 (515)
Q Consensus 224 p 224 (515)
|
T Consensus 185 ~ 185 (250)
T PF06813_consen 185 P 185 (250)
T ss_pred C
Confidence 4
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.7e-09 Score=100.75 Aligned_cols=150 Identities=10% Similarity=-0.066 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHH
Q 035636 284 IAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363 (515)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (515)
+.+...++.............|.+.++.|.+..+.++..+...++..++++..+++.||+|||+.+..+..+.+++..++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34444444444444555677788888889999999999999999999999999999999999999999999988887665
Q ss_pred HHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 364 GIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSML 443 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (515)
..... ..+.+..+....+.+.+.+.... ....+..+..|++.+++..++.+.+..+|..++|.+.+.+.
T Consensus 86 ~~~~~----------~~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 86 WPAAE----------IMNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHh----------hccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 12233444444555555444433 33455567889899999999999999999999999988775
Q ss_pred h
Q 035636 444 C 444 (515)
Q Consensus 444 ~ 444 (515)
.
T Consensus 155 ~ 155 (410)
T TIGR00885 155 L 155 (410)
T ss_pred h
Confidence 3
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-09 Score=97.48 Aligned_cols=159 Identities=10% Similarity=0.057 Sum_probs=122.9
Q ss_pred HHHHHhHHHHHHHcCCCChh-HHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 035636 298 NAIMFYAPVLFQTVGFGSEA-SLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376 (515)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (515)
....+..|++.++.|++..+ .+.+...+..+..+..+++|++.||+|.|+.+..+.+...+..+++++..
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44556677888888999999 99999999999999999999999999999999999888888888877742
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh---HH
Q 035636 377 LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIF---FF 453 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~ 453 (515)
....+.+.-++++.+-+..+ ....++...+|+++|+++.|+.+....+|.++++++.+. ....++..+ ..
T Consensus 114 ----Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 114 ----SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 23445555556666655554 446777899999999999999999999999999999999 455664432 33
Q ss_pred HHHHHHHHHHHHHhccccC
Q 035636 454 FAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (515)
+.......+++..+++|..
T Consensus 187 Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3344444555555667743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-06 Score=83.41 Aligned_cols=342 Identities=12% Similarity=0.079 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh------h--h----h---hHHHHHHHHHHHhhhh
Q 035636 83 LFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA------A--F----H---ISMLILGRLALGIGVG 147 (515)
Q Consensus 83 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~------~--~----~---~~~l~~~r~l~G~~~~ 147 (515)
...-.-.+..++.++..|.+.||..|.+++..+.+..-++..+... . + + ...+++.-.+.|.-..
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 121 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER 121 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence 3333445667788888999999999999988887764333222221 1 1 1 1122222222222222
Q ss_pred hhhhh-hhhhhhhcc------CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-
Q 035636 148 FANQA-VPLFLSELA------PAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS- 219 (515)
Q Consensus 148 ~~~~~-~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~- 219 (515)
..... ..++=.||. +++.+.+..+...-.--+..+++|++.|.+.+. .+.+....+.++..++..+.=++
T Consensus 122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~--~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF--ASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 122223553 233445666677777788899999999999654 56777777766666665543322
Q ss_pred ---c-cCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhh
Q 035636 220 ---I-CETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFT 295 (515)
Q Consensus 220 ---~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (515)
+ ...|. +..+++.++.+...+.. +..+.+.+....+...+.-++....|+..+++ +.+.......+..+.
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q----~vflas~alalLY~T 273 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQ----PVFLASFALALLYFT 273 (432)
T ss_pred HHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhC----HHHHHHHHHHHHHHH
Confidence 1 22232 22222222211100000 00000111111111111112223445555444 444443333333333
Q ss_pred hHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 296 GINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
...+...+..|....|+++...+..-....+.++.+.++..++.+|+|..+.-..+......++.+..........+
T Consensus 274 -VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~-- 350 (432)
T PF06963_consen 274 -VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP-- 350 (432)
T ss_pred -HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC--
Confidence 23345556667777799999999999999999999999999999999988877777666655554444433211000
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQ 437 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~ 437 (515)
.+.......+....+--.+.- ++--...-+..|..|+++||+..|+-+...++...+.-.
T Consensus 351 -~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 351 -FSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred -chhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 001122222223333333321 122233455679999999999999999988887766443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=107.30 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
.....+.+....+..--+.+....+-.-+..|.++...|++...+.+...+.++++|++.||++|++++.++..+-.++.
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 33444444555554444555555555555669999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++..+.. ..|..++.-.+.+.+- .++.|+...+++|.+|..+|++.+++.++....|+.+|-....
T Consensus 113 ~~~~fs~-------------~Fwq~~l~R~~vGiGe-As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 113 FASGFSN-------------HFWQVLLCRGFVGIGE-ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHHHH-------------HHHHHHHHHHHhccch-hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 8777743 3355555555555554 4567788889999999999999999999999999988877777
Q ss_pred HHHhhcc--chhhHHHHHHHHHHHHHHHhccccCCCCChH
Q 035636 441 SMLCNMK--AGIFFFFAAWIVVMGLFAMFLLPETKGVPVD 478 (515)
Q Consensus 441 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (515)
.+.+..+ ...+...+++.++++++..++.+|+.++..+
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 7666655 3456677777778888888888877665433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-09 Score=100.37 Aligned_cols=173 Identities=15% Similarity=0.086 Sum_probs=118.2
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-----Cchh-HHHhhhHHHHHHH
Q 035636 287 LLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA-----GRRA-LLLEAVVQMFITQ 360 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-----~~~~-~~~~~~~~~~~~~ 360 (515)
...++.+...+.....-+|.++++.|++.++.+++...... .+..++.|+++||+ |||| .+..+....+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34445566667777888999999999999999998666554 68889999999999 7765 6777777766666
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
..+.+.. +..+.+.......+.. .......+...+++.|..|+++|+++.++......+|..+++.+.+
T Consensus 83 ~~l~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 83 AAMAFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 6554421 1122233333333333 2333344566777889999999999999999988999999999999
Q ss_pred HHHhhc-cchhhHHHHHHHHHHHHHHHhccccC
Q 035636 441 SMLCNM-KAGIFFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 441 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
.+.+.. ++...+...++..+...+..+..+|+
T Consensus 152 ~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 152 WLADRVLGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred HHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 888853 66555444333333333344455554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.9e-09 Score=102.78 Aligned_cols=118 Identities=15% Similarity=0.257 Sum_probs=101.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhhhhhhhhh
Q 035636 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-FHISMLILGRLALGIGVGFANQAVPL 155 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 155 (515)
+..+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999999888888777665 46677778889999999999999999
Q ss_pred hhhhccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 156 FLSELAP-------AKIRGALNISFQLFITIGIFIANMVNYAMSNV 194 (515)
Q Consensus 156 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~ 194 (515)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999999999988654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=99.38 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=109.2
Q ss_pred cCCcchHHHHHHHHH-HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHhhhh
Q 035636 75 KYDNQFLQLFTSCLY-LAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA------AFHISMLILGRLALGIGVG 147 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~------~~~~~~l~~~r~l~G~~~~ 147 (515)
|++++++|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 889999999988876 466788999999999999999998877766433332221 1233444555566677778
Q ss_pred hhhhhhhhhhhhccCC-CCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHh
Q 035636 148 FANQAVPLFLSELAPA-KIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 148 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~ 216 (515)
...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+. .||+..|++.++..++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~--~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR--FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHH
Confidence 7878888888777776 7889999999999999999999999999664 58999999888777665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=100.69 Aligned_cols=121 Identities=20% Similarity=0.135 Sum_probs=90.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHH-HH---hhhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVL-TS---AAFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~-~~---~~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|++..+.++....+.++..++.+++|+++||+|||+++..+..+..+.... .. ..+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 778888899998999999999999999999999999988765554332221 11 12344444455666677777777
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHhhccC
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQL-FITIGIFIANMVNYAMSNVH 195 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~ 195 (515)
+....++.|.+|+++|+++.++... +..++..++|.+.+++.+..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 7777889999999999999998644 44455778999999887653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.5e-09 Score=100.88 Aligned_cols=146 Identities=11% Similarity=-0.041 Sum_probs=95.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--h--hhhhHHHHHHHHHHHhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS--A--AFHISMLILGRLALGIGVGFAN 150 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~--~--~~~~~~l~~~r~l~G~~~~~~~ 150 (515)
|.+..+.++..++..++..+++++.|+++||+|||+++..+..+.++...... . .++....+..-++.+++.+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888889999988888899999999999999999988777665443332221 1 1233322222222333344444
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccC
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQLFITI-GIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICE 222 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (515)
+....++.|++|++.|+.++|+.+....+ .....|.+.+.+... ..|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~--g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI--GMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 55677889999999999999998876543 334477777766432 23666666666666665555554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=94.92 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=105.6
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
.+|+++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999998888888877666665544333 4556889999999999
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhh
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAG 207 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~ 207 (515)
..+...+..|++ .+.+.++. ....+|.++.|++.|.+.+. .|.+..|++..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~--~g~~~a~~v~~ 301 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC--LGIQLAFALPV 301 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh--ccchHHHHHHH
Confidence 999999988765 45666765 56678999999999988664 56777776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-09 Score=97.39 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=124.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+....|.+.+..-+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHH-HHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccC
Q 035636 155 LFLSELAPAKIRGALNISF-QLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICE 222 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (515)
.|+++.+|+|..++...+. +...++|.++.+.++|.+.+. .|.+..|++.+.+.++..++..+ +++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~--~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR--IGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh--cCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999999988776766664 678899999999999999554 78999999988887776666555 443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=118.40 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=119.9
Q ss_pred ccCCcc-hHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 74 CKYDNQ-FLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 74 ~~~s~~-~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
+|++.. +.+++.+...++.+++++++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 377888 8999999999999999999999999999999999999999988888888889999999999999999999999
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHH
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALF 212 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~ 212 (515)
..+++.+..|+++|++++++.+....+|.++++.+++.+... ..++...|++.+.+.++
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL-GLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888776542 24566666665555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=96.62 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=110.8
Q ss_pred hhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 035636 295 TGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPT 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (515)
.+...+.+++=-.+++.+-.+...|......-.+.++.-++.+++++|+|+-+++.+++.+..+=++.+..+
T Consensus 385 ~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------- 456 (618)
T KOG3762|consen 385 AGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------- 456 (618)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------
Confidence 334444444444567777667777777788888899999999999999999999988887777766666553
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccch-hhH
Q 035636 375 GSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVST-NMLFTFLVAQAFLSMLCNMKAG-IFF 452 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-~~~ 452 (515)
+++|..+.+-.+-+...+..+..+ .+|++...|++.+.++.++.... ..+|-.+|+.+.|.+.++.+.. .+.
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~ 530 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR 530 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence 345666666666666666666544 57788999999999999998765 4678889999999999988844 344
Q ss_pred HHHHHHH
Q 035636 453 FFAAWIV 459 (515)
Q Consensus 453 ~~~~~~~ 459 (515)
++++.++
T Consensus 531 ~~giAcl 537 (618)
T KOG3762|consen 531 IFGIACL 537 (618)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=107.59 Aligned_cols=156 Identities=10% Similarity=-0.066 Sum_probs=111.4
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHH
Q 035636 289 QVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILA 368 (515)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (515)
..+.+......+....+.+-++++++..+.|++.+...++..++.++.+++.||.+||+.+..+.++.+++.+++++...
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 33433333344444556666778999999999999999999999999999999999999999999999999888766432
Q ss_pred HhcC-CC--------------------C------------CC--cc--h-hhHHHHHHHHHHHHhhhcccccchhhhccc
Q 035636 369 IWLK-PT--------------------G------------SL--NK--V-EAIIVVVLVCVFVMGFAWSWGPLGWLIPSE 410 (515)
Q Consensus 369 ~~~~-~~--------------------~------------~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (515)
+.-. .. . .. .. . ....+++.-++.+.+.+ ...++...++.|
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~i~d 199 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISYIDD 199 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchhhhc
Confidence 1100 00 0 00 00 0 11222333444444433 334566788899
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 411 TFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 411 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
.+|++.|+.+.|+.+....+|..+++.+.+.+.+.
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-08 Score=98.01 Aligned_cols=166 Identities=12% Similarity=0.155 Sum_probs=109.7
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGS 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (515)
.+.+..+.+.+.++.|++..+.+....... ......++.|++.||+|+|+++.++.++..++.++..+.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 456677888888888999999888876633 3345667789999999999999999999999988877642100
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 035636 377 LNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAA 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (515)
...+.+...+..++.+.+.+... +.....+.+.+| +.||++.|+......+|+.+.+.+...+........+++.+.
T Consensus 116 -i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~v 192 (591)
T PTZ00207 116 -IEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMS 192 (591)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 01233334444444444433222 223344567887 789999999999999999876665555544222344555555
Q ss_pred HHHHHHHHHHhccccC
Q 035636 457 WIVVMGLFAMFLLPET 472 (515)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (515)
+..+..++...+++..
T Consensus 193 l~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 193 FALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHhheeCC
Confidence 5555555555555443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=95.63 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSI 362 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (515)
+..+.+.++.............|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444455555555677777889887888999999999999999999999999999999999999999999998888766
Q ss_pred HHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 363 IGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
+.... ...+.+..++...+.+.+.+.... ....++.+..|++.|...+++.+....+|..+++.+.+.+
T Consensus 108 ~~~~~----------~a~~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 108 FWPAA----------EIMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHH----------hcCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211 112334444555555555554433 3345556777766666678999999999999999887665
Q ss_pred H
Q 035636 443 L 443 (515)
Q Consensus 443 ~ 443 (515)
.
T Consensus 177 ~ 177 (438)
T PRK10133 177 I 177 (438)
T ss_pred H
Confidence 4
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=109.64 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHh
Q 035636 316 EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMG 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
...++..+...+..++.+++.|+++||++||+++........+...+...... ..+.+.++++.++.+.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHH
Confidence 44677777888999999999999999999999764422222222221111111 12334444444444444
Q ss_pred hhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccccC
Q 035636 396 FAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPET 472 (515)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (515)
.+ .+.|....++.+.+|++.++.++|+.++...+|..++|.+.|.+.+..++...++..++..+..+++.+.++++
T Consensus 122 ~a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 122 SA-LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HH-hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 33 34567788889999999999999999999999999999999999998887666555555555555555555544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=89.22 Aligned_cols=323 Identities=8% Similarity=0.039 Sum_probs=204.6
Q ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhh
Q 035636 91 AALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALN 170 (515)
Q Consensus 91 ~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 170 (515)
.+.+.-++.=.+.|..-.|++++.-.+...+...+.-+.++.+.+=+.-+..|...+ ...+-++++-+..+++++.++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 344445555578999999999999988888889999999999999899999998766 5667889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcch
Q 035636 171 ISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVD 250 (515)
Q Consensus 171 ~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
+...+..-.|...|..++-.+.+....++...-.+......+......++|..+|....+.+.++.. ..+..+.+...
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~~~ 210 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNPQA 210 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCccc
Confidence 9999999999999999999888766666777777766666667777788888776655544443211 11111111100
Q ss_pred HHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcC--CCChhHHHHHHHHHHH
Q 035636 251 NEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVG--FGSEASLLSAVITGLV 328 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 328 (515)
+..+... .....+.+-++.-.++|.+....+.......+++-+..|...+.++.. -.....|..-.+..+.
T Consensus 211 ~~~~~l~-------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlL 283 (433)
T KOG3810|consen 211 SYMSYLR-------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLL 283 (433)
T ss_pred hhhHHHH-------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHH
Confidence 0000000 000111111122233344444444455556677888888888887763 1222335556677788
Q ss_pred HHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhc
Q 035636 329 NVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIP 408 (515)
Q Consensus 329 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (515)
++++.+..|.+.-++.|..-+.++......+.+++... ...+.|.......++...+..... +....+
T Consensus 284 Ga~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~yvlfr~~y~l~it-iA~~~i 351 (433)
T KOG3810|consen 284 GAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGYVLFRVIYQLTIT-IATFQI 351 (433)
T ss_pred HHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhHHHHHhhHhhhhh-HHHHHH
Confidence 88888999988666666544443333222222222211 334566667777777776665533 333334
Q ss_pred ccCCCchhhhhHHHHHHHHHHHHHHHH
Q 035636 409 SETFPLETRTAGFAFAVSTNMLFTFLV 435 (515)
Q Consensus 409 ~~~~p~~~~~~~~~~~~~~~~~g~~~~ 435 (515)
++....+.-|..+|+..++.-+-..+.
T Consensus 352 A~nL~~e~~gLvFGiNTFvAl~lQsil 378 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGINTFVALILQSIL 378 (433)
T ss_pred HHhhhhhhheeeeehHHHHHHHHHHhh
Confidence 455666777888888776655544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=94.55 Aligned_cols=118 Identities=13% Similarity=-0.006 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCV 391 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+.+...+|.+-+.+++...+.++..|.++||+|||.++..+....++..++.+... ....++..=+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------~F~afv~aR~ 129 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------NFAAFVLARF 129 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 33556788999999999999999999999999999999999888888776666532 2222222122
Q ss_pred HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC 444 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (515)
.++. .-+...+..++++|.++++.|+.+++..+....+|-++||.+.|++..
T Consensus 130 l~Gi-~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 130 LGGI-FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhh-ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 2222 223334567888999999999999999999999999999999999887
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=85.41 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccc
Q 035636 324 ITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPL 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
...++.+++.++.+++.||++||+.+..+.....++.+..... ...+.......+.+.+.+.. .+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~ 71 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFA-LVA 71 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHh
Confidence 4567788899999999999999999888777777666555432 12233333344444443332 345
Q ss_pred hhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHhcccc
Q 035636 404 GWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG-IFFFFAAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 471 (515)
...+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++. .+...+....+..+..++..||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5677789999999999999999999999999999999998877764 3444444444444444444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=97.00 Aligned_cols=117 Identities=19% Similarity=0.320 Sum_probs=92.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhh----hcchHHHHH-HHHHHHHHHHHHHhhhhh-----------------
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSK----QGRRPTMQI-ASFFFLVGVVLTSAAFHI----------------- 132 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~~~~-~~~l~~i~~~~~~~~~~~----------------- 132 (515)
|++....+.+--+..+...+.+++.|..+|| |||||.++. +.++..++.++.+++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 7888888888888889999999999999994 998766555 555666777777776433
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcch-hhhHHHHHHHHHHHHHHHHHHHh
Q 035636 133 SMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGA-LNISFQLFITIGIFIANMVNYAM 191 (515)
Q Consensus 133 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~l~~~l 191 (515)
..++++--+.=++.-.....+.+++.|...++++.+ +.+.+....++|..+|..++++.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 244555555666667788899999999998777776 99999999999999998888744
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8e-08 Score=92.34 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=113.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh---hhH------HHHHHHHHHHhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF---HIS------MLILGRLALGIG 145 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~---~~~------~l~~~r~l~G~~ 145 (515)
|++..+..+..........+..+++..+.||+|||+.++.+..++.+..+++.... +.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999998888777542 111 223444444444
Q ss_pred hhh-hhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhh-ccccCc
Q 035636 146 VGF-ANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGS-MSICET 223 (515)
Q Consensus 146 ~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 223 (515)
.+. .-|...-+.+|.+|++.|+.++++.....-+...+-...-..+.+. .|- +.|++..+++.+..+.. ..+||+
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~--~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV--IGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 333 3567777899999999999999999988888877766666666443 333 77788888877766655 459998
Q ss_pred h
Q 035636 224 P 224 (515)
Q Consensus 224 p 224 (515)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 5
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-09 Score=103.11 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=133.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhc--chHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQG--RRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.++++++++.+...-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988 566777888888899999999999999999999999999999988
Q ss_pred hhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcccc
Q 035636 153 VPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSIC 221 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (515)
....+.|+.+.++-..+.|+.....+++.++||++++.+.+.. .+|...|+..++..++....+++.+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-CCeeeehhhcChHHHHHHHHHHHhH
Confidence 8889999999999999999999999999999999999887654 3599999999999888887777666
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-08 Score=92.47 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=120.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-hhhHHHHH----HHHHHHhhhhhhh
Q 035636 76 YDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA-FHISMLIL----GRLALGIGVGFAN 150 (515)
Q Consensus 76 ~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~ 150 (515)
.+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888889999999999999999999999999999999888887 55444333 3456999999999
Q ss_pred hhhhhhhhhccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHhhccCC----CchHHHHHhhhHHHHHHHHhhcc-ccC
Q 035636 151 QAVPLFLSELAPAKIRGALNISFQL-FITIGIFIANMVNYAMSNVHP----YGWRLSLAIAGVPALFLCVGSMS-ICE 222 (515)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~~----~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (515)
..+..++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+ ..|...+.+.++..++..+++.+ .+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999877 478999999999999976432 34667777777776666555543 443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=96.49 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=97.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-GRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|.+..+.+++.+...++..+++++.|+++||+ +||+.+..+..+.+++.++..+.++..... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 77889999999999999999999999999999 567777788888888877777765543332 4577899999998888
Q ss_pred hhhhhhccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 154 PLFLSELAP-AKIRGALNISFQLFITIGIFIANMVNYAMSNV 194 (515)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~ 194 (515)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 787765554 45678889998988899999999999998764
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=86.78 Aligned_cols=136 Identities=10% Similarity=0.041 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035636 81 LQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSEL 160 (515)
Q Consensus 81 ~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 160 (515)
.+.+.-+-.+...+.-+.+.++.+|+..+.=+....++..++.++.++++|.+.=+++-++.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344555555666777777888899988777777788889999999999999999999999999999988888887754 5
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccC
Q 035636 161 APAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICE 222 (515)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (515)
+++ ...+-+.++.+.+.++|+..-..+.. ...+-|..+++..++.++..+..++ +|.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 543 35788899999999999888777765 3355677887777766555555444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-05 Score=77.45 Aligned_cols=258 Identities=12% Similarity=0.048 Sum_probs=154.4
Q ss_pred CcchHHHHHHHHHHHHHHH-HHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----h---------------------
Q 035636 77 DNQFLQLFTSCLYLAALIA-SFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA----F--------------------- 130 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----~--------------------- 130 (515)
+.+.+.++-+...+...+. .++.+++++|++|++++......+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467888888887777666 8999999999999999988888777766666654 1
Q ss_pred ------hhHHHHHHHHHHHhhhhhhhh-hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc------CCC
Q 035636 131 ------HISMLILGRLALGIGVGFANQ-AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNV------HPY 197 (515)
Q Consensus 131 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~------~~~ 197 (515)
+.|...+.-+...+-...... ....+..|.++.+|-.|..++...+.++|.++++.+..++.+. ...
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~ 200 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD 200 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 123333444455554454554 7788999999999999999999999999999999998887631 112
Q ss_pred chH----HHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhh
Q 035636 198 GWR----LSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKL 273 (515)
Q Consensus 198 ~wr----~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
.|. ..+.+.++..++...+..++.+.. ..+.+..+ .+ +.+++++++.+..+.
T Consensus 201 ~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~---------------~~------~~~~k~k~k~~~~es 256 (472)
T TIGR00769 201 GWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYN---------------PA------LKEKKVKPKMSTMES 256 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccc---------------hh------hccccCCCCCCHHHH
Confidence 342 233333333333333322221110 00000000 00 011222335555666
Q ss_pred cccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChh----HHHHHHHHHHHHHHHHhhHHHhhhccCchhHH
Q 035636 274 MKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEA----SLLSAVITGLVNVFSTLVSVYAVDKAGRRALL 349 (515)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 349 (515)
++...+.|.+..+++...+.....+.+..-.....++..-++.+ .+......++..++..++.+++.+|+|-+...
T Consensus 257 ~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a 336 (472)
T TIGR00769 257 LKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA 336 (472)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66555667777776666665555555444333333333222222 23444555666666677778999999987666
Q ss_pred HhhhHHHHH
Q 035636 350 LEAVVQMFI 358 (515)
Q Consensus 350 ~~~~~~~~~ 358 (515)
.+.-+...+
T Consensus 337 ~i~Pii~li 345 (472)
T TIGR00769 337 LITPLVMLL 345 (472)
T ss_pred HHHHHHHHH
Confidence 554444333
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.5e-08 Score=92.85 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhh----ccCchhHHHhh-hHHHH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVD----KAGRRALLLEA-VVQMF 357 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----~~~~~~~~~~~-~~~~~ 357 (515)
+.........++ ++.....+.+.++++.|.+....+.......+..++.+++.|+++| |+|||+.++.. .....
T Consensus 7 i~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 7 LRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 333334444433 3566667777788899999999999999999999999999999999 59999988764 44444
Q ss_pred HHHHHHHHHHHHhc--CC-CCCCcch-hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhh--hhHHHHHHHHHHHH
Q 035636 358 ITQSIIGIILAIWL--KP-TGSLNKV-EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETR--TAGFAFAVSTNMLF 431 (515)
Q Consensus 358 ~~~~~~~~~~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~g 431 (515)
+++.++.+...... .. ....... ..+..++.+.+...+......|. .+++.|..|+++| +.+.++.+....+|
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 44444443221100 00 0000000 01222333333333443333344 5778999998865 57899999999999
Q ss_pred HHHHHHHHHHH--Hhhc-------------c-chhhHHHHHHHHHHHHHHHhccccCC
Q 035636 432 TFLVAQAFLSM--LCNM-------------K-AGIFFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 432 ~~~~~~~~~~~--~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
+.+++.+.+.. .+.. + ...|++.+++.++..++..+..+|..
T Consensus 165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99998887754 2221 1 12344444445555555556666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-08 Score=94.32 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=105.3
Q ss_pred HHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-----CchhHH-HhhhHHHHHHHHHHHHHHHHhc
Q 035636 298 NAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA-----GRRALL-LEAVVQMFITQSIIGIILAIWL 371 (515)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 371 (515)
.......|.+.++.|++..+.+..... .+...+ .++.|++.||+ ||||.+ ..+....++....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 345567788889999999999988655 444444 88999999997 788864 455555555544443311
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 035636 372 KPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK---- 447 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---- 447 (515)
+....+.......+...+. ....+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 ------~~~~l~~l~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 79 ------PSTDLPLLAGLAFLIAFFS-ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred ------cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 1112222222222233222 22344556777899999999999999999999999999999998888776
Q ss_pred ----chhhHHHHHHHHHHHHHHHh-ccccC
Q 035636 448 ----AGIFFFFAAWIVVMGLFAMF-LLPET 472 (515)
Q Consensus 448 ----~~~~~~~~~~~~~~~~~~~~-~~~~~ 472 (515)
|...+...++..+...+..+ ..+|+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 65555555544444444333 34553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=86.94 Aligned_cols=144 Identities=12% Similarity=-0.018 Sum_probs=111.6
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFL-VGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~-i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
.||+|+...+.+.+....-.++.+++.|.++|++|++-..+.+..+.. .+.....| +++.=+++..+.|+..+....
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHH
Confidence 349999999999999999999999999999999999987777655544 34444433 344445677889998887777
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHHHhhhH-HHHHHHHhhc
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP-YGWRLSLAIAGV-PALFLCVGSM 218 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-~~wr~~f~~~~~-~~~~~~~~~~ 218 (515)
.....++...|+++.|++.+..+...++|..+.|++++++.+.++ +.|--.|++... +++....+.+
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 777888899999999999999999999999999999999987654 556555555444 4444433333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-07 Score=91.56 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=119.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFH--------ISMLILGRLALGI 144 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~--------~~~l~~~r~l~G~ 144 (515)
++++......+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 37788888888888888889999999999995 99999999999999999988877521 2346677888899
Q ss_pred hhhhhhhhhhhhhhhccCCCC---cchhhhHHHHHHHHHHHHHHHHHHHhhccC-----CCchHHHHHhhhHHHHHHHHh
Q 035636 145 GVGFANQAVPLFLSELAPAKI---RGALNISFQLFITIGIFIANMVNYAMSNVH-----PYGWRLSLAIAGVPALFLCVG 216 (515)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-----~~~wr~~f~~~~~~~~~~~~~ 216 (515)
|.|+.-+...+...|.+++++ |...+.++..+.++|.++++++...+.+.. ..+|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999997643 567888899999999999999988886321 146999999998887776665
Q ss_pred hc
Q 035636 217 SM 218 (515)
Q Consensus 217 ~~ 218 (515)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 43
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-08 Score=95.06 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=98.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF--HISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
|.+....++......++..++.++++++.||+|+|+++.++..+.+++.++..+.+ +++.+++..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555677888999999999999999999999999888887777653 6677777888999999999999
Q ss_pred hhhhhhhccCCC-------CcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 035636 153 VPLFLSELAPAK-------IRGALNISFQLFITIGIFIANMVNYAMSN 193 (515)
Q Consensus 153 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~l~~~l~~ 193 (515)
..++.+|..+.+ ++|...+..+....+|..+++.+.+.+.+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888754 35888999999999999999999887654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=90.82 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcc
Q 035636 88 LYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRG 167 (515)
Q Consensus 88 ~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 167 (515)
..+.-.-|.++.+++.||+|||+++..+.++++++.++...+.+-..+.+.-|..-++.++.+.+.+.|..|.+|..-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566778899999999999999999999999999988887754333333333333344556778889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCch
Q 035636 168 ALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETP 224 (515)
Q Consensus 168 ~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp 224 (515)
...|.-....-+|.++.|.++ ...+ ..-..+..+.+..+++..+...++|-.+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e---~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAE---LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhc---cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999998 3322 2344566677777888888888877544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8e-08 Score=89.98 Aligned_cols=135 Identities=26% Similarity=0.416 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhhhhhhh
Q 035636 79 QFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFH--ISMLILGRLALGIGVGFANQAVPLF 156 (515)
Q Consensus 79 ~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 156 (515)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999999988888876677777777776 8999999999999999999999999
Q ss_pred hhhccCC-CCcchhhhHHHH-HHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHH
Q 035636 157 LSELAPA-KIRGALNISFQL-FITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFL 213 (515)
Q Consensus 157 i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~ 213 (515)
+.|+.|+ ++|+...+.... ...+|.++++.+++.+......+||..|.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999998 678888888888 58889999998877775432257999776666655443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=89.87 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cC----CCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhhH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQT-VG----FGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAVV 354 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~ 354 (515)
|.++.+...=+..-++++++...+..|+.. .+ ++..++...+..++...-+..+++||++|| +|+|+.+..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 445555555556666677777766666643 35 999998888888888888889999999999 599999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCch--hhhhHHHHHHHHHHHHH
Q 035636 355 QMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLE--TRTAGFAFAVSTNMLFT 432 (515)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~g~ 432 (515)
+..++.+++.... ........+.+.+...+.+. +-|....+..|++|++ .|-.++++.++..++|+
T Consensus 101 l~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 101 LMAIGHLVLAISS-----------VSGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHhccc-----------cccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 9999999988731 01233344444444444433 3566677788999864 36778888888999999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhcccc
Q 035636 433 FLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (515)
+++|.+.+++.++.++...+..+.+....+++.++..++
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999888888888888877777776654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=91.77 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=119.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.++++.+.+++.+....+.+++.+.++++.||+|-|+++..+.++.++..++..+... ...+..++.-.
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~R~ 136 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVLRF 136 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHHHH
Confidence 4678888999999999999999999999999999999999999999999888887653 23334455555
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccch-hhHHHHHHHHHHHHHHHhc
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN-MKAG-IFFFFAAWIVVMGLFAMFL 468 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 468 (515)
+.+++.+..+ |....+.++-.|+++|++..++.....++|.+++-++.|.+.+. .||. .+++.+++.++..++.+++
T Consensus 137 lqGl~~g~~~-pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 137 LQGLGQGVLF-PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HhHHHHhHHH-hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 5665655554 44567778999999999999999999999999999999999998 7754 5566666666666655555
Q ss_pred ccc
Q 035636 469 LPE 471 (515)
Q Consensus 469 ~~~ 471 (515)
..+
T Consensus 216 ~~d 218 (466)
T KOG2532|consen 216 YSD 218 (466)
T ss_pred hcC
Confidence 543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-07 Score=90.98 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHhhhhhhhhh
Q 035636 78 NQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA-----AFHISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 78 ~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ ..+.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777899999999999999999999999888877766655432 345677777888899999999999
Q ss_pred hhhhhhhccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 035636 153 VPLFLSELAP-------AKIRGALNISFQLFITIGIFIANMVNYAMSN 193 (515)
Q Consensus 153 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~ 193 (515)
..++++|..+ .++.|..++......-+|..+++.+.+++.+
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999965 3334568899999999999999999888754
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=88.86 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=116.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCV 391 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+-+..+.|+++....+.+++.+++.|.+.||+|+|..++++...+..+.+++++.. ..+..++.=.+
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy~~l~vAR~L 168 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SYPMLFVARSL 168 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999998888743 22344455555
Q ss_pred HHHhhhcccccchhhhcccCCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHhcc
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLET-RTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA-GIFFFFAAWIVVMGLFAMFLL 469 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 469 (515)
-+.+.+... .....++++.+|.+. |++++|+.-.+..+|..++|++.|.+++..|. ..|.+.++++++-..+-++.+
T Consensus 169 QgvgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 169 QGVGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhhhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 555554443 344667789999765 79999999999999999999999999999995 456666666666666665555
Q ss_pred ccC
Q 035636 470 PET 472 (515)
Q Consensus 470 ~~~ 472 (515)
+.+
T Consensus 248 ~p~ 250 (464)
T KOG3764|consen 248 EPT 250 (464)
T ss_pred Ccc
Confidence 443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-06 Score=73.44 Aligned_cols=308 Identities=11% Similarity=0.126 Sum_probs=171.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+....++|.+.-+.+-..++...+.|.++|+.|||+..+.-++.+.++++ .-.++.+-.++++|.+-|+..+..+....
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 66777888887777777788888999999999999987666665555443 34578899999999999999999888887
Q ss_pred hh-hhhccCCCCcchhhhHHH--------HHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchh
Q 035636 155 LF-LSELAPAKIRGALNISFQ--------LFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 155 ~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~ 225 (515)
++ +.|.-.+ |+.---+.. .+..+-.+++.+.+-.+.+....|--.+|-..+....+...+.+- .
T Consensus 147 sWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~-----~ 219 (454)
T KOG4332|consen 147 SWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS-----S 219 (454)
T ss_pred HHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh-----h
Confidence 75 5676532 332211111 223333445555555555544456667776655554443332221 1
Q ss_pred hHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH
Q 035636 226 SLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (515)
|-..-+++.+.+..+... +...+.+.. .++..++-.+...+....+..+..|.|
T Consensus 220 W~ENygdps~~kdlltqf-----------------------~gaa~aiaS---D~ki~LLG~iqsLFE~smytFVFLWTP 273 (454)
T KOG4332|consen 220 WSENYGDPSENKDLLTQF-----------------------KGAARAIAS---DEKIALLGAIQSLFEGSMYTFVFLWTP 273 (454)
T ss_pred hhhccCChhhhHHHHHHh-----------------------hHhHHHHhc---chHHHHHHHHHHHHhhhhheeeeeecc
Confidence 222222222211111100 011111111 123344444444445555555556666
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCc--hhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGR--RALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.+-.+ -...--|.+++.+.+..++|+-+..++..|-.. ...+.+.+....+.+.+...... ..+ .+..+.
T Consensus 274 aLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP---~kes~~ 345 (454)
T KOG4332|consen 274 ALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS---VSP---SKESPS 345 (454)
T ss_pred cCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc---cCC---CcCCch
Confidence 55311 111234677778888888888888776655433 23444444444444333333222 111 122333
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAV 425 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 425 (515)
..++.++++-.+.+..+..+ .-+-++..|.+.|++.+-+..
T Consensus 346 ~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhhee
Confidence 34666666666666665444 455578889998876655443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.7e-08 Score=94.91 Aligned_cols=150 Identities=7% Similarity=0.022 Sum_probs=120.3
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHH
Q 035636 73 YCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA----------FHISMLILGRLAL 142 (515)
Q Consensus 73 ~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----------~~~~~l~~~r~l~ 142 (515)
++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+...+. ++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 469999999999999999999999999999999999999999999999888664321 3444556677889
Q ss_pred HhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-----CchHHHHHh-hhHHHHHHHHh
Q 035636 143 GIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP-----YGWRLSLAI-AGVPALFLCVG 216 (515)
Q Consensus 143 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-----~~wr~~f~~-~~~~~~~~~~~ 216 (515)
+++.+........++.+..|++.++...++.++..++|..+++.+++.+.+..+ ++.++...+ ..+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876533 333333322 33334444444
Q ss_pred hccccC
Q 035636 217 SMSICE 222 (515)
Q Consensus 217 ~~~~~e 222 (515)
..++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 456775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=81.22 Aligned_cols=169 Identities=14% Similarity=0.219 Sum_probs=113.8
Q ss_pred hhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 035636 294 FTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKP 373 (515)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (515)
....+.+..|.|.+-++.|++.++...+.....++..+ .++.|.+.|++|.+..+.++.....++..++.....-.
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~--- 90 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR--- 90 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 33467888999999999999999999998888888876 48889999999999999999999999988877654311
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 035636 374 TGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFF 453 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (515)
.+..+.|...+..++.+.+... +.........+.+| ++||++.|+.-....+++.+-..+...+.+......+..
T Consensus 91 ---i~~~~~~~~~~~~~l~~~s~~~-~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~ 165 (250)
T PF06813_consen 91 ---IPSLPVWLMCLFLFLGGNSSCW-FNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLF 165 (250)
T ss_pred ---cCccchHHHHHHHHHHcccHHH-hhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHH
Confidence 0112233333333332222211 12222233347788 689999999999999999998888877766643333344
Q ss_pred HHHHHHHHHHHHHhcccc
Q 035636 454 FAAWIVVMGLFAMFLLPE 471 (515)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (515)
.+....+..++...+++.
T Consensus 166 la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 166 LAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHhhheec
Confidence 444444444444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=90.91 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhhhhh
Q 035636 79 QFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF--HISMLILGRLALGIGVGFANQAVPLF 156 (515)
Q Consensus 79 ~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 156 (515)
...+++..+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhccCC-------CCcchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 035636 157 LSELAPA-------KIRGALNISFQLFITIGIFIANMVNYAMSNV 194 (515)
Q Consensus 157 i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~ 194 (515)
++|..+. ++.|...+.......+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999873 3347888999999999999999988877543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=77.72 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=115.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|+|..+.|++.+...+.....++....+++| -++|+..+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 8999999999999999999999999999995 56788888888888888888878765443333 489999999999999
Q ss_pred hhhhhhccCCCC-cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhc
Q 035636 154 PLFLSELAPAKI-RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSM 218 (515)
Q Consensus 154 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~ 218 (515)
..++.+..++.+ -++..++.+....+=...||.+.|++-|.. .+|+......+...++..+.-+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-GSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-CChHHHHHHHHHHHHHHHHHHh
Confidence 999998886544 355667777776666778999999997755 5899888887777666655444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-07 Score=88.33 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=89.9
Q ss_pred HhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 035636 302 FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVE 381 (515)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (515)
.-++.+.++.|-++ ...++.....++..++.++.|+++|.+|||..++.+.++..++.++.+.. .+
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~ 130 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QN 130 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------Cc
Confidence 34566667777654 44567777889999999999999999999999999999998888877653 22
Q ss_pred hHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035636 382 AIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKA 448 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 448 (515)
....+....+.+.+.+.. .+....++|..|.+.|..+.++.....-.....++.+...+..+.+|
T Consensus 131 ~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 334444555555543322 23445578999999998877766554444444566666555444443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-06 Score=74.50 Aligned_cols=357 Identities=15% Similarity=0.064 Sum_probs=177.3
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhh----
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCS---- 104 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d---- 104 (515)
.+.+.+...|...+..+ ++|-+.+.= |.|.++.+...-++. - .---++|.++.|
T Consensus 35 lLl~LYllQGiP~GL~~---~iP~lL~ak-----------------~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~ 92 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG---AIPLLLQAK-----------------GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYS 92 (510)
T ss_pred HHHHHHHHcCCchhHhh---hhHHHhcCC-----------------Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHH
Confidence 34455778888888766 335555421 567766665533221 1 223466888888
Q ss_pred -hhcchHHHHH-HHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhh
Q 035636 105 -KQGRRPTMQI-ASFFFLVGVVLTSAA-----------FHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNI 171 (515)
Q Consensus 105 -r~Grr~~~~~-~~~l~~i~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 171 (515)
|+||||..++ +..+.+...+..+.. ++...+...-++.-+..+.--.+.-.+.-.+..+++-|.+..
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 9999986544 344444444433331 344444445566666677777777788888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-----CCchH---------HHHHhhhHHHHHHHHhhccccCchhhHHhhCChHHHH
Q 035636 172 SFQLFITIGIFIANMVNYAMSNVH-----PYGWR---------LSLAIAGVPALFLCVGSMSICETPTSLIERGRLEEGR 237 (515)
Q Consensus 172 ~~~~~~~~G~~i~~~l~~~l~~~~-----~~~wr---------~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 237 (515)
....+...|..++..+--.+.+.+ -.+|. .-.++.+.+.++.-.+..+..+++.....+
T Consensus 173 ~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~------- 245 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE------- 245 (510)
T ss_pred HHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh-------
Confidence 777777777776655433332200 01121 123333444444444444433332210000
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhhcccCcc---hhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCC
Q 035636 238 VVLQRIRGVANVDNEFDSIVHACEMANQVTKP---FSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFG 314 (515)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (515)
+.+...+.. .++.++- +. +..++......=.++..-....+.-+.+.|++
T Consensus 246 -----------------------e~~~~i~~~yk~l~~vLkl---k~-v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ 298 (510)
T KOG3574|consen 246 -----------------------ELELGIHESYKLLRDVLKL---KS-VRWLAGILLTGKLGFQAADALTSLKLLEHGVP 298 (510)
T ss_pred -----------------------hhhcCHHHHHHHHHHHHcC---cc-HHHHHHHHHHHHHHhhhhhhccchHHHHcCCC
Confidence 000001111 2233322 12 22222222222233444455566666788999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHH--hhhH---HHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHH
Q 035636 315 SEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLL--EAVV---QMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLV 389 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (515)
..+-++...+..-.+++.....|++... +|++.. -+.. ..+....++.+.... ..+. +..-.....++.+
T Consensus 299 ke~Lal~~v~~~plqI~l~~~~gk~ta~--~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~-~~~~--~G~~~~~~~il~i 373 (510)
T KOG3574|consen 299 KEELALIAVPLVPLQIALPLYIGKWTAG--PRPLNVFLKAVPYRLGGGLVQTALVWWTPT-LGHS--DGTFPRGYYILLI 373 (510)
T ss_pred hhHheeeeeehhhHHHhhhhhheeecCC--CCcchHHHHhhhHHHHHHHHHHHHHhhhcc-cccC--CCceeechHHHHH
Confidence 8887766544444444444444433321 221111 0110 111111111111100 0000 0111111112222
Q ss_pred --HHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 390 --CVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 390 --~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
-.+..++.........+..+++.++...|+.+.+.|+..++|+-.-..+..++.|..
T Consensus 374 ~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 374 TSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 112212211111223466678999999999999999999999998888888888754
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-06 Score=77.49 Aligned_cols=149 Identities=11% Similarity=-0.066 Sum_probs=111.9
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHH
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGI 365 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (515)
....++.............|.+.+..+.+..+++++...+..+..+.++..+++.+|+|+|+-++.++.++++++.++..
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455566778887888999999999999999999999999999999999999999999999999988865
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 366 ILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
... .......+..+.+.+.+.+.- ......+++.+.|++....-+.+.+.++.+|++++|.+.+.+..+
T Consensus 98 Aa~----------~~~y~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 98 AAS----------SKSYGFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhh----------hhhHHHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 432 112223333333344433332 233456667888888788889999999999999999999988873
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=84.46 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcc-hhhHHHHHHHHH
Q 035636 313 FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNK-VEAIIVVVLVCV 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 391 (515)
+++...+.+..+..++.++|+++.|++.||+|||++.-..++++.++.++.+.... ..++ ...+++...=.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-------~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-------TTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-------CCCCcchhhHHHHHHHH
Confidence 56677888899999999999999999999999999998888888777765444221 0011 112222222233
Q ss_pred HHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 035636 392 FVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQ 437 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~ 437 (515)
.+.+.+. -.|+..++++|....+.||+-.+...+....|...|..
T Consensus 154 LGiGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 154 LGIGIGG-DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred hhccccC-CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence 3333332 34788888999999999999888776655554444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.7e-07 Score=89.39 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=106.2
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 035636 309 QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVL 388 (515)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (515)
+..+.+.....+..+++.++.++|.++.|.++||+|||+++..+..+..++.++.++. .+.+..++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~ 177 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF 177 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence 3446677778888999999999999999999999999999999999998888666653 233444444
Q ss_pred HHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhc
Q 035636 389 VCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFL 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (515)
-++.+++.+.. ....+.+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++.++.
T Consensus 178 Rfl~G~~~~~~-~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 178 RFLSGFFGSGP-LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHhhccch-hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 44555444433 34667788899999999999999 88889999999999998887 3333333333333333333444
Q ss_pred cccC
Q 035636 469 LPET 472 (515)
Q Consensus 469 ~~~~ 472 (515)
.+|.
T Consensus 254 ~~Es 257 (521)
T KOG0255|consen 254 PPES 257 (521)
T ss_pred cCcC
Confidence 5454
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=83.08 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=91.4
Q ss_pred hhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc----cCch-hHHHhhhHHHHHHHHHHHHHH
Q 035636 294 FTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDK----AGRR-ALLLEAVVQMFITQSIIGIIL 367 (515)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 367 (515)
......+..|+++++.+ .|+++..++....+.-+...+..++.|+++|| +||| +.++.+.+..+++..++...
T Consensus 22 ~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~- 100 (444)
T PRK09669 22 NLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT- 100 (444)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC-
Confidence 33345556666666654 59999999999999999999999999999999 5664 44555655555554433221
Q ss_pred HHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 368 AIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETF-PLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+... .....++..+...++..++.....|. .++.+|.. ++++|.+..+....+..+|+.+++.+...+....
T Consensus 101 -----p~~~-~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~ 173 (444)
T PRK09669 101 -----PDFG-ATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL 173 (444)
T ss_pred -----CCCC-cchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1000 01112233333333444444433343 35566776 4577888888888888888888877665555443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.3e-06 Score=83.93 Aligned_cols=142 Identities=21% Similarity=0.109 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhh
Q 035636 317 ASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGF 396 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (515)
+.+++.+...++..+++++.|+++|++|||+.+.++.+...++.++..... +.....+.-++.+.+.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------------~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------------SWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHhccch
Confidence 347999999999999999999999999999999999999999988888742 3455566666666666
Q ss_pred hcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhhHHHHHHHHHHHHHHHhccccCC
Q 035636 397 AWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM--KAGIFFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 397 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
+.... +...+.+|..|++.||...+..+....+|..++ .+.+...++. +|...+....+..+...+..++.||..
T Consensus 157 G~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 157 GGASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hhhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 55543 446778999999999999999988888766666 6666666553 566555555555444444566777653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=67.75 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=98.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 035636 76 YDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPL 155 (515)
Q Consensus 76 ~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 155 (515)
+++..--.-.++.+....+.+++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++..-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 333333445666777788888889999999999999999999988655544 4577889999999999999999999999
Q ss_pred hhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhh
Q 035636 156 FLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMS 192 (515)
Q Consensus 156 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~ 192 (515)
++.+..++++|++..++.-.....+.++|.++..++.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877663
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=73.54 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=124.5
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhh-hhcchHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCS-KQGRRPTMQIASFFFLVGVVLTSA---AFHISMLILGRLALGIGV 146 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~~~~~~~l~~i~~~~~~~---~~~~~~l~~~r~l~G~~~ 146 (515)
.+-||+|..+...+...+..|..++-...|++.. |.++|+.-.+++.+..++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999887 788888888888887777666444 467889999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC--------CCchHHHHHhhhHHHHHHHHhh
Q 035636 147 GFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH--------PYGWRLSLAIAGVPALFLCVGS 217 (515)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~--------~~~wr~~f~~~~~~~~~~~~~~ 217 (515)
|.......+...+..++++.|..+|.+.....++..++..+++.+.+.. ..+|-..|.+.++..++...+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875521 1467777888777766665544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=79.63 Aligned_cols=154 Identities=8% Similarity=0.025 Sum_probs=98.8
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc----cCchh-HHHhhhHHHHHH
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDK----AGRRA-LLLEAVVQMFIT 359 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~----~~~~~-~~~~~~~~~~~~ 359 (515)
..+.-+........+..|+.+++.+ .|+++..++.+..+.-+...+.-++.|.++|| +|||+ .++.+.+..+++
T Consensus 14 Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~ 93 (460)
T PRK11462 14 YGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV 93 (460)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence 3333333344455666677777655 49999999999999999999999999999997 46654 455565666555
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCC-chhhhhHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFP-LETRTAGFAFAVSTNMLFTFLVAQA 438 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (515)
..++... + +........+..+..+++..++.....|. .++..|+.+ +++|.+..+.......+|..+++.+
T Consensus 94 ~~llf~~------p-~~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 94 CVLAYST------P-DLSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHhC------C-CCCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 1 10011112233333334455555444444 355567766 6789999999999999888888777
Q ss_pred HHHHHhhcc
Q 035636 439 FLSMLCNMK 447 (515)
Q Consensus 439 ~~~~~~~~~ 447 (515)
...+.+..+
T Consensus 166 ~~plv~~~g 174 (460)
T PRK11462 166 MMPLVNLIG 174 (460)
T ss_pred HHHHHHHhC
Confidence 666655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.2e-07 Score=85.49 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=127.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+-.+...|.....-..|-++.-++.+++..++|+-+++.+++.+..+=.+...+.+|.|..+..-+++|+..+..+.++.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55666677777777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHHHHH-HHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 155 LFLSELAPAKIRGALNISFQLF-ITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
+|++...||+-|..+-++.+.. .++|--+|.++|+.+... ++=|..|.+.++.+++.+++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~--fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER--FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee--ehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764 688999999999998654 78899999999988887766544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-05 Score=73.84 Aligned_cols=119 Identities=17% Similarity=0.266 Sum_probs=99.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF--HISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
+.++....+.......+.+++.+++.++++|+|+|+++.++.++.+++.++..+.+ +.+.+++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44556667777788888888899999999999999999999999999999988876 7888999999999999999999
Q ss_pred hhhhhhhccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 035636 153 VPLFLSELAP-------AKIRGALNISFQLFITIGIFIANMVNYAMSN 193 (515)
Q Consensus 153 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~ 193 (515)
..++++|..+ .++-|...+......=+|..++..+.++...
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988774 2333677788888888888888877776644
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=81.32 Aligned_cols=186 Identities=12% Similarity=0.028 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHH--cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCc-hhHHHhhhHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQT--VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGR-RALLLEAVVQMF 357 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~ 357 (515)
|.++...+..+.....+.....-.-.|+++ .+-+.+..|+..+...++..+++++.++...|.++ |+.++.+.+++.
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAI 113 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHH
Confidence 445555555444443333322223334555 57778889999999999999999999999999885 788888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 035636 358 ITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQ 437 (515)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~ 437 (515)
++.++....... ++...+..++.=.+.+. +.+.....-.|+++..-.++|.++++.......+|.++||.
T Consensus 114 ~g~llY~~l~~~--------~~~~~y~mL~~R~l~Gv--g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 114 IGNLLYLALAYV--------PNGVKYLMLVARILTGV--GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHhc--------ccchHHHHHHHHHHcCc--CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 998888554431 22233444444444443 33334556788888777788888888887777777777776
Q ss_pred HHHHHHhh----c--------c--chhhHHHHHHHHHHHHHHHhccccCCCCC
Q 035636 438 AFLSMLCN----M--------K--AGIFFFFAAWIVVMGLFAMFLLPETKGVP 476 (515)
Q Consensus 438 ~~~~~~~~----~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (515)
+...+..- . + ....++.+++.++..++.....+|..+..
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 54333211 0 1 12445566666666666666677654443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=80.47 Aligned_cols=152 Identities=10% Similarity=0.032 Sum_probs=109.0
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHH
Q 035636 309 QTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVL 388 (515)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (515)
++.++...+.+...+++.++.+++.+.++.+.||++..+.+....++.++..++-... .+.+..++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHH
Confidence 3446777888999999999999999999999999995555544433333332222221 233445555
Q ss_pred HHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------cc-chhhHHHHHHHHHH
Q 035636 389 VCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN------MK-AGIFFFFAAWIVVM 461 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~ 461 (515)
-++.++.-+.++ |....++...+.+++|+.-+|+.+....+|+++++.+...+.+. .| .+.+.+-+++.++.
T Consensus 141 r~llGl~es~~w-P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFESGGW-PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhcccc-hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 556666655554 55567778999999999999999999999999999998876542 23 34667777777888
Q ss_pred HHHHHhccccCCC
Q 035636 462 GLFAMFLLPETKG 474 (515)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (515)
++++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 8888888886544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.7e-09 Score=102.41 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhh
Q 035636 317 ASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGF 396 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (515)
..++..+...++.++|+++.|++.||+|||+.+..+..+..++.++..+... ..+.+...+.-.+.+.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc
Confidence 4577888889999999999999999999999999999988888877776321 013344455555555555
Q ss_pred hcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHhccccCC
Q 035636 397 AWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM---KAGIFFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 397 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
+... +....++.|..|++.|+...++.+....+|..++..+.-...+.. .|........+..+...+...+.||..
T Consensus 117 g~~~-~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 117 GGAY-VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4443 455678889999999999999988888777777665543332222 245555555544444455556677763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0023 Score=60.99 Aligned_cols=261 Identities=14% Similarity=0.040 Sum_probs=152.3
Q ss_pred CCcchHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---------hh--------------
Q 035636 76 YDNQFLQLFTSCLYL-AALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA---------FH-------------- 131 (515)
Q Consensus 76 ~s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~---------~~-------------- 131 (515)
.+++.+..+-+..-+ +..+..++.+++.+++.|++++-..+..+....+++++. ++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 356677788777777 778889999999999999999998888888877777763 11
Q ss_pred ---------hHHHHHHHHHHHhhhhhhhh-hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-----
Q 035636 132 ---------ISMLILGRLALGIGVGFANQ-AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP----- 196 (515)
Q Consensus 132 ---------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~----- 196 (515)
.|...+.-.+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++.+...
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~ 217 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASE 217 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHH
Confidence 13333333333332233322 456678899999998999999999999999999999888865321
Q ss_pred ---CchHHHHHhhhHHHHHHHHhhcc----ccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcc
Q 035636 197 ---YGWRLSLAIAGVPALFLCVGSMS----ICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKP 269 (515)
Q Consensus 197 ---~~wr~~f~~~~~~~~~~~~~~~~----~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
..-+..+.+.+..+++...+..+ +++.|+....+++. +++++.+.+
T Consensus 218 ~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~k---------------------------k~~~k~k~~ 270 (509)
T COG3202 218 FKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKK---------------------------KKKKKLKLG 270 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcc---------------------------cccccccCc
Confidence 01233344444444444333322 23333322111100 112233445
Q ss_pred hhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHH-HHHHHcCCCCh---hHHHHHHHHHHH-HHHHHhhHHHhhhccC
Q 035636 270 FSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAP-VLFQTVGFGSE---ASLLSAVITGLV-NVFSTLVSVYAVDKAG 344 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~---~~~~~~~~~~~~-~~~~~~~~~~l~d~~~ 344 (515)
..+.++...+.|.+..+.+...+...+.+.+-.-.- ..-+..-.+.+ -.+......++. .++...+++.+.+|.|
T Consensus 271 ~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~G 350 (509)
T COG3202 271 LIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVG 350 (509)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 555555555557777777666665555544433322 22222211111 123334445555 4555667788888888
Q ss_pred chhHHHhhhHHHHHHHHHH
Q 035636 345 RRALLLEAVVQMFITQSII 363 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (515)
-....++.-+.+.+..+++
T Consensus 351 W~~~AlitPiv~litg~lF 369 (509)
T COG3202 351 WFTGALITPLVMLITGVLF 369 (509)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766655555554443333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-06 Score=58.48 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLI 136 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~ 136 (515)
++|.++.|++.+..++|+.+|++...++.++..+++.+..+.++..+..+.+++.++++.+.
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 89999999999999999999999999999998899999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-05 Score=73.00 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=97.7
Q ss_pred HHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchh
Q 035636 326 GLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGW 405 (515)
Q Consensus 326 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (515)
++..++.+...|.++||+|||..+........+....+.+.. |+..+... ..+++.. ......
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~~~~-l~g~~~~-~~s~~~ 134 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFLLLG-LSGGFSA-IFSVGF 134 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhhhcc-cccchhh-hhhhhh
Confidence 678888999999999999999999888777777766665521 22222111 2222222 234557
Q ss_pred hhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHHhccccCCCCCh
Q 035636 406 LIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAGI-FFFFAAWIVVMGLFAMFLLPETKGVPV 477 (515)
Q Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (515)
+++++....+.|....|+.+.....+..++|.+.+.+.+..+... +.+..+...+........+||+..++.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 788899999999999999999999999999999999999888554 444555555556666677788766543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00044 Score=65.84 Aligned_cols=41 Identities=5% Similarity=-0.171 Sum_probs=33.2
Q ss_pred hhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 405 WLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
.++-+.+..|..-|+.+.+.|++.++|+---..+.-+++|.
T Consensus 427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 34446777889999999999999999998877777677764
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0098 Score=58.38 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=147.8
Q ss_pred CcchHHHHHHHHHH-HHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh---------h----------------
Q 035636 77 DNQFLQLFTSCLYL-AALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA---------F---------------- 130 (515)
Q Consensus 77 s~~~~g~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~---------~---------------- 130 (515)
.++.+..+-....+ +..+...+..+++++++|.+++-.....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666554444 455667778999999999999888777766666555542 1
Q ss_pred ------hhHHHHHHHHHHHhhhhhhhh-hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc-c------CC
Q 035636 131 ------HISMLILGRLALGIGVGFANQ-AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSN-V------HP 196 (515)
Q Consensus 131 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-~------~~ 196 (515)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+ . ..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 122333333333333333333 457888999999999999999999999999999998888766 1 11
Q ss_pred CchHHHHHhhh-HHH---HHHHHhhccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhh
Q 035636 197 YGWRLSLAIAG-VPA---LFLCVGSMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSK 272 (515)
Q Consensus 197 ~~wr~~f~~~~-~~~---~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (515)
..|........ +.. ++.......+.+.. ..+++.. .....+++++++.+.++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~~---------------------~~~~~~kk~k~k~s~~e 271 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRFY---------------------PSAKKKKKKKPKMSLKE 271 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccccc---------------------hhhhcccccCCCccHHH
Confidence 34654332222 111 11111111111100 0000000 01111233444556666
Q ss_pred hcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChh----HHHHHHHHHHHHHHHHhhHHHhhhccCchhH
Q 035636 273 LMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEA----SLLSAVITGLVNVFSTLVSVYAVDKAGRRAL 348 (515)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 348 (515)
.++...+.|.+..+++.........+.+..-.....++.--++.+ .|......++..++..++++.+.+|+|-+..
T Consensus 272 s~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 272 SFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666656667777777776666655555555444444443222222 2444556677777777888999999998776
Q ss_pred HHhhhHHH
Q 035636 349 LLEAVVQM 356 (515)
Q Consensus 349 ~~~~~~~~ 356 (515)
..+.-+..
T Consensus 352 AlitPiv~ 359 (491)
T PF03219_consen 352 ALITPIVI 359 (491)
T ss_pred HHHhHHHH
Confidence 65543333
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00029 Score=64.62 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Q 035636 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIV 385 (515)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (515)
.+.++.|++..+++.++....+...+...+.|.+.||+|||+..+...++..++++.-.. ...+..
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------------~~~~~L 124 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------------SNYPVL 124 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------------cccHHH
Confidence 344677999999999999999999999999999999999999888777777776654322 222333
Q ss_pred HHHHHHHHHhhhcccccc----hhhhcccCCCchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhccc--hhhHHHHHHH
Q 035636 386 VVLVCVFVMGFAWSWGPL----GWLIPSETFPLETRTAGFAFAVS-TNMLFTFLVAQAFLSMLCNMKA--GIFFFFAAWI 458 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 458 (515)
++.=++.+...+..+... ....-..-+|++..+...+.... .+.+-++++..+...+.+..+. ...+..++.+
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~ 204 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL 204 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence 333333333333322211 11222234566666666665553 3444555666666666666553 3344444444
Q ss_pred HHH-HHHHHhccccCCC
Q 035636 459 VVM-GLFAMFLLPETKG 474 (515)
Q Consensus 459 ~~~-~~~~~~~~~~~~~ 474 (515)
+++ .+++...-+|..+
T Consensus 205 l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 205 LAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHhcccccCC
Confidence 443 3333333345433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=63.65 Aligned_cols=90 Identities=7% Similarity=-0.009 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC----CchH--HHHH
Q 035636 131 HISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP----YGWR--LSLA 204 (515)
Q Consensus 131 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~----~~wr--~~f~ 204 (515)
.++..++.-++.|++.+.......++.+. +|++ .+..+..+.+++.+++.++--......+ ..++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 46677778888999998888888887774 4543 4555556666665555544322211110 1122 2233
Q ss_pred hhhHHHHHHHHhhccccCchh
Q 035636 205 IAGVPALFLCVGSMSICETPT 225 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~~~esp~ 225 (515)
+..++.+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 344444455555555777664
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.1e-05 Score=53.36 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=56.9
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhH
Q 035636 288 LQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVV 354 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~ 354 (515)
...+..+.+...+.-|.|.++++.|+++.+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3445555666777889999999999999999999999999999999999999999998887765443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00031 Score=67.51 Aligned_cols=108 Identities=20% Similarity=0.340 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------hHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC---CcchhhhHHHHHH
Q 035636 110 PTMQIASFFFLVGVVLTSAAF---H------ISMLILGRLALGIGVGFANQAVPLFLSELAPAK---IRGALNISFQLFI 177 (515)
Q Consensus 110 ~~~~~~~~l~~i~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 177 (515)
|+++++.+++.+|.++..++. + .+.++++-++.++|.|+.-+...++++|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578889999999998855442 2 268899999999999999999999999999876 3566788899999
Q ss_pred HHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 178 TIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 178 ~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
++|..++..+.+++.+. .+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999998644 79999999999888777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0023 Score=64.11 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=112.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhh---------------------
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFH--------------------- 131 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~--------------------- 131 (515)
++.+...+.-..+.+.-......+.++.++|- +||-+++.++.++..++..+..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 36677778888888888888999999999995 78889999999988888655544311
Q ss_pred ----hHHHHHHHHHHHhhhhhhhhhhhhhhhhccC---CCC---cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHH
Q 035636 132 ----ISMLILGRLALGIGVGFANQAVPLFLSELAP---AKI---RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRL 201 (515)
Q Consensus 132 ----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~ 201 (515)
...++.+.-+..+|.|+.-+...++-+|-++ +++ +..-+.++....++|..++..+-.+..+. .+|.+
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~--~~w~l 225 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN--VGWKL 225 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc--cccee
Confidence 1366777788888999999999999999998 322 23678888999999999999888887433 78999
Q ss_pred HHHhhhHHHHHHHHhhcc
Q 035636 202 SLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~ 219 (515)
-|.+..+..+++.++++.
T Consensus 226 gf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIFLP 243 (571)
T ss_pred eccHHHHHHHHHHHHHHc
Confidence 998888776666555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=67.29 Aligned_cols=133 Identities=11% Similarity=0.140 Sum_probs=89.8
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHH
Q 035636 308 FQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVV 386 (515)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (515)
.+..|++...+..+...+....-+..+++|++.|+ +|+++.+..+.++..++..++.+... +... ........+
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~----~~~~-~~~~~~~~l 89 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI----PSSG-HPLHDLLDL 89 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC----cccc-cchHHHHHH
Confidence 34568888888888888888888888999999998 68999999888888888877665221 0000 011112233
Q ss_pred HHHHHHHHhhhcccccchhhhcccCCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 387 VLVCVFVMGFAWSWGPLGWLIPSETFPLE---TRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+.+.+...+.+. .-|...+...|.++++ .+-..+.++....++|+.+++.+.+++.+..
T Consensus 90 ~gLaLia~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 90 LGLALIALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444333 3344456666777643 4677888888899999999999999887553
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=50.43 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=41.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFF 119 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 119 (515)
.|+|+.++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3999999999999999999999999999999999998887766554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=56.69 Aligned_cols=129 Identities=6% Similarity=-0.042 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHH-HhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhc--CCCC--------CCcch----
Q 035636 316 EASLLSAVITGLVNVFS-TLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWL--KPTG--------SLNKV---- 380 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~---- 380 (515)
+...++-+...+...+. .++.+++++|++|++.+............++.+...-.. .++. ..+..
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45556655555544444 788899999999999888777666666666655432100 0000 00000
Q ss_pred ----hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035636 381 ----EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC 444 (515)
Q Consensus 381 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (515)
..|...+.............+-+.|.+++|.+..++..+-.++....+++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111111122222668889999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0038 Score=54.47 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHh---hccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 164 KIRGALNISFQLFITIGIFIANMVNYAM---SNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 164 ~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
|+|+....+...++++|.++.-..--.- .+.....|++++.+.+++.++-+++...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888999988765542221 1111146999998888887665555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0041 Score=58.63 Aligned_cols=126 Identities=19% Similarity=0.021 Sum_probs=86.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH--HHHHHH
Q 035636 312 GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI--IVVVLV 389 (515)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 389 (515)
| +...+-+...++.+..++..+.+-|+.||+|-|....++.....++..+=..... +. .++..+ .....-
T Consensus 76 g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-----p~--v~~~f~~~l~~~Gq 147 (480)
T KOG2563|consen 76 G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-----PF--VPPLFRRPLTHTGQ 147 (480)
T ss_pred c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-----cc--ccccchhhhhHHhH
Confidence 5 6666778888999999999999999999999999999998888888766554322 00 012222 233333
Q ss_pred HHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 390 CVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
.+......... .++.-+..-.+|+++|+++..+..+.+.+|..++-.+-..+..+.
T Consensus 148 ~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 148 SIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 33333322221 122233345689999999999999999999988877776666554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=47.12 Aligned_cols=114 Identities=12% Similarity=-0.007 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 035636 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFV 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
++..-..-..+......+.+++.+.+.+++|.|+.++++.+...+-...... ...+..+....+.+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G 100 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLG 100 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHh
Confidence 3333445556667778888888999999999999999887776655444332 23455566666777
Q ss_pred HhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 394 MGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSM 442 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 442 (515)
.+.+..+.+.. .++.+...++.+++..++.-.+...+.++|..+.-.+
T Consensus 101 ~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 101 FGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666553 4556788888999999998888888777777655444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.41 E-value=2.8e-05 Score=77.44 Aligned_cols=157 Identities=11% Similarity=-0.022 Sum_probs=0.8
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHH
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGI 365 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (515)
+++..+.+......+...++.+-++++++..++|++.+..-++.++..++..+..+|..|-+++-.+.++++++.+++.+
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33444444333333444455555667999999999999999999999999999999988888888999999988887765
Q ss_pred HHHHhcCC-CC--------------------------------CCcchhh----HHHHHHHHHHHHhhhcccccchhhhc
Q 035636 366 ILAIWLKP-TG--------------------------------SLNKVEA----IIVVVLVCVFVMGFAWSWGPLGWLIP 408 (515)
Q Consensus 366 ~~~~~~~~-~~--------------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (515)
-..+.... .. ....... +..++..++.+.+ +....++..+|+
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG-~~pl~tLG~tYi 166 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIG-ATPLYTLGITYI 166 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcc-ccCCccceeeee
Confidence 43221100 00 0001111 1122222222222 223446778999
Q ss_pred ccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 409 SETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSML 443 (515)
Q Consensus 409 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (515)
-|..+++..+...|+......+|..+|=.+.+...
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp -----------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 99999999999999999988888877766655444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.018 Score=54.65 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=98.0
Q ss_pred HhHHHHHHH-cCCCChhHHHHHHHH-HHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 035636 302 FYAPVLFQT-VGFGSEASLLSAVIT-GLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNK 379 (515)
Q Consensus 302 ~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (515)
+..|++.+. .|++.++..--.-+. .=..++..++...+.|.++.|+.++++.+...+...++.+.
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------- 91 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------- 91 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 334555554 688887765333332 33455566777889999999999998888877776666553
Q ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHH
Q 035636 380 VEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK--AGIFFFFAAW 457 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 457 (515)
...+..-+.-+.++...+.- ...++++-...|+++--++.+.......+|.+++..+.-.+....+ +.....+...
T Consensus 92 ~sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 22334444444444444332 2334555566788887888998888888888888887777666443 3333334444
Q ss_pred HHHHHHHHHhccccCCC
Q 035636 458 IVVMGLFAMFLLPETKG 474 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~ 474 (515)
....+.+..+++|..++
T Consensus 170 ~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 44445555556665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.14 Score=48.32 Aligned_cols=33 Identities=6% Similarity=0.107 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC
Q 035636 131 HISMLILGRLALGIGVGFANQAVPLFLSELAPAK 164 (515)
Q Consensus 131 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 164 (515)
.++..++.-.+.|++.|..........++. |++
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ 148 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSE 148 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHH
Confidence 456677777888888888877777766665 444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0046 Score=62.54 Aligned_cols=196 Identities=12% Similarity=0.014 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
..+.++.+..+.+.+....+...+..+=++++++..+.|++....-++..+......+...|..|-+++-.+.++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 33444455555554443333333444444569999999999999899999999999999999999999999999999998
Q ss_pred HHHHHHHHHhc--------------CC-------------C----C--C-----CcchhhHHHHHHHHHHHHhhhccccc
Q 035636 361 SIIGIILAIWL--------------KP-------------T----G--S-----LNKVEAIIVVVLVCVFVMGFAWSWGP 402 (515)
Q Consensus 361 ~~~~~~~~~~~--------------~~-------------~----~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (515)
++..+--.+.. .+ . . + ..+...|.++++.-++.+.......+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 88776422111 00 0 0 0 00111232222222333223334456
Q ss_pred chhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------c-chhhHHHHHHHHHHHH
Q 035636 403 LGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM------------------K-AGIFFFFAAWIVVMGL 463 (515)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~ 463 (515)
+...|+-|...++......|+.+++..+|.++|-.+.+....-+ | |+.-+++.+...+...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999988888777776655421 2 3344444445555555
Q ss_pred HHHhccccCCCCC
Q 035636 464 FAMFLLPETKGVP 476 (515)
Q Consensus 464 ~~~~~~~~~~~~~ 476 (515)
+.+++.|+...+.
T Consensus 337 ~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 337 VPLFFFPKELPKS 349 (735)
T ss_pred HHHHhCcccCccc
Confidence 5566666655543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.045 Score=54.73 Aligned_cols=136 Identities=9% Similarity=0.030 Sum_probs=80.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH-HHHHHH-HHHHHH----Hhhhhh-HHHHHHHHHHHhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQI-ASFFFL-VGVVLT----SAAFHI-SMLILGRLALGIGVG 147 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~-~~~l~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~~ 147 (515)
|-+..+.+.+.+++++|..+|+.+++++.++.-|+....- ...+.+ ++..+. ++...+ ..++..-++.|+..|
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888999999999999999999988744333322111 111111 111111 111111 223344566778888
Q ss_pred hhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHH
Q 035636 148 FANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALF 212 (515)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~ 212 (515)
+..|....+..+... ++-++..|.......+|.++|.++.+++.- ...|-....++.+.+.++
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl-p~lG~~~t~~~~a~l~~~ 188 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL-PRLGLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 888877766654332 224677888888999999999998777642 114443333344444333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0038 Score=61.08 Aligned_cols=150 Identities=10% Similarity=0.078 Sum_probs=112.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAA----------FHISMLILGRLALGI 144 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----------~~~~~l~~~r~l~G~ 144 (515)
|.++...|.+..+..++..++..+......+..-|+++..+.++.++.++....- ++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 4788899999988999999999999988888899999998888887766653321 222333445566777
Q ss_pred hhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC---Cc---hHHHHHhhhHHHHHHHHhhc
Q 035636 145 GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHP---YG---WRLSLAIAGVPALFLCVGSM 218 (515)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~---~~---wr~~f~~~~~~~~~~~~~~~ 218 (515)
..+..+.....+++|..|+...+...++..+..++|..++..++..+.+..+ .+ -.+..++..+..++.+++..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 7777888888999999999999999999999999999999999888865422 11 22444555555555555555
Q ss_pred cccCch
Q 035636 219 SICETP 224 (515)
Q Consensus 219 ~~~esp 224 (515)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 667644
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.01 Score=42.18 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=60.8
Q ss_pred HHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHH
Q 035636 297 INAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGII 366 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (515)
-+.+.-.+|.+.++.+++..+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999998888888888888888887777764
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=54.56 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHH-----HHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhh
Q 035636 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFF-----LVGVVLTSAAFHISMLILGRLALGIGVGFANQ 151 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~-----~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 151 (515)
..++..+...+|.+|..++.--...+ |+ |++.+.+.+-. .+...+.-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777888887776664432221 33 44444333322 22223333568899999999999999999999
Q ss_pred hhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 035636 152 AVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAM 191 (515)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 191 (515)
.....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.034 Score=53.70 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=95.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh---h---h----hhHHHHHHHHHHHh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSA---A---F----HISMLILGRLALGI 144 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~---~---~----~~~~l~~~r~l~G~ 144 (515)
|+++..+|..-+...+....+.+...++.+|+|..|.=+++......+..++.. . + +...++.+-.+.=+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988888877755444433332 1 2 23344444444445
Q ss_pred hhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCch
Q 035636 145 GVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGW 199 (515)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~w 199 (515)
|.=+...+..-++.|..|+++||...+......++-.++...++-.+.+-.+++|
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 5555667788889999999999999999999999999988888766644333444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.096 Score=50.71 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhhhhh---hhcchHHHHHHHHHHHHHHHHHHhh------------------hhhHHHHHHHHHHHhhh
Q 035636 88 LYLAALIASFVASRVCS---KQGRRPTMQIASFFFLVGVVLTSAA------------------FHISMLILGRLALGIGV 146 (515)
Q Consensus 88 ~~l~~~~~~~~~g~l~d---r~Grr~~~~~~~~l~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~ 146 (515)
..+|..+++.+.+.+++ ++||++.+.++..+..++.++.-+. +++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 34455555566666665 5999999999999988887776653 24567778889999999
Q ss_pred hhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 035636 147 GFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAM 191 (515)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 191 (515)
+......+.++.+.. +++|..+.++...-.+++..++.......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999 56689999999988888888776655443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00043 Score=64.30 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcc-CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhc
Q 035636 320 LSAVITGLVNVFSTLVSVYAVDKA-GRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAW 398 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (515)
..+..+.++..+|+.+..+..-+. ++|++.. ..+.=.+..-++.........+.....-.+-+..++...+++...+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356678899999999888753221 2343333 22222222222222111000000000001223333334444443332
Q ss_pred ccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 035636 399 SWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQA 438 (515)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 438 (515)
...+...+..+..+++.|..+-.+...+-.+|-.+|..+
T Consensus 265 -l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 -LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred -hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556777788888888777766666666666665544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0082 Score=56.73 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc----cCchhHHH-hhhH
Q 035636 280 PPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDK----AGRRALLL-EAVV 354 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~----~~~~~~~~-~~~~ 354 (515)
++.+....+....++ +...-..|.+.+++..|.+....+......-+.+++.+++.|..+|| +||||..+ .+..
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 344444444444444 45666778888889999988888777777778889999999999997 67776654 4555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcc----hhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhh-HHHHHHHHHH
Q 035636 355 QMFITQSIIGIILAIWLKPTGSLNK----VEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTA-GFAFAVSTNM 429 (515)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~ 429 (515)
..++++.++.....+...--.+... ......++.+.+.-........|. -++..|+..++.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 5566666665544322111111011 111222233333333333334444 566678887777777 8888888888
Q ss_pred HHHHHHHHHHH
Q 035636 430 LFTFLVAQAFL 440 (515)
Q Consensus 430 ~g~~~~~~~~~ 440 (515)
+|+.+|=...+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88877644443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.21 Score=46.13 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=84.3
Q ss_pred HHHHHhHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 035636 298 NAIMFYAPVLFQTVGFGS--EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTG 375 (515)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (515)
.......+.+..+.+.+. ...+.......+...++.++.|.+.||.|||+.+..+.....++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------- 89 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--------- 89 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------
Confidence 334445566666655555 467888888888899999999999999999977766665433332222221
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCc-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 035636 376 SLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPL-ETRTAGFAFAVS-TNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~ 445 (515)
.....+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 90 --~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --PNVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --ccchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222 2345556777888887 678888888877 5777778888666666554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.57 Score=44.39 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFIT 359 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (515)
-..+.+++.........+.+..-.+++.++. +.+. +........+...+..++.-.+.-+...|....++..+..+.
T Consensus 18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~ 95 (406)
T KOG1479|consen 18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIA 95 (406)
T ss_pred cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555677777777777766 3333 334444444444444444444444433332222333333333
Q ss_pred HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 035636 360 QSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAF 439 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~ 439 (515)
.++......... ..+.......+..+....++..+.+...+ ..+... ..+|++.....++-.+..+.+.+.. ..+.
T Consensus 96 il~i~~l~~~~v-~~~~~~~~ff~vt~~~vv~~~~a~a~~qg-s~~G~a-~~~P~~ytqavm~G~a~aG~l~Sl~-~i~t 171 (406)
T KOG1479|consen 96 ILFIVTLDLALV-KTDTWTNGFFLVTLIIVVLLNLANAVVQG-SLYGLA-GLFPSEYTQAVMSGQALAGTLTSLL-RILT 171 (406)
T ss_pred HHHHHHHHHHhh-ccCCccchhHHHHHHHHHHHhhhhhhhcc-chhhhh-hcCCHHHHHHHHhcchhHhHHHHHH-HHHH
Confidence 222222221111 11111122223333333344444333333 334553 5677665444333333333222222 2222
Q ss_pred HHHHhhc--cchhhHHHHHHHHHHHHHHHhccc
Q 035636 440 LSMLCNM--KAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 440 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
....+.. +...++..+.+..+.+++++...+
T Consensus 172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~ 204 (406)
T KOG1479|consen 172 KAAFSDSRTSALIYFITSTVILLLCFVLYLVLP 204 (406)
T ss_pred HHhcCCCCceeehhHHHHHHHHHHHHHHHHHhh
Confidence 2222222 233455555555555666555444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.013 Score=52.22 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035636 82 QLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELA 161 (515)
Q Consensus 82 g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 161 (515)
|.+.-+-.+-..+..+.+....||+---.=+.+..++.+.+..+.+++++.++-+.+-.+..++.|.......++-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y- 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY- 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence 3343344455556666666778886655555667778888889999999999999999998888887766655544332
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccc
Q 035636 162 PAKIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSI 220 (515)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (515)
.....+.+..+.+.+.++|..--.++.+..+.+-|...++...+-++.....+++
T Consensus 144 ----~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 ----PSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred ----CCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3345566777777777777776666655444667777776666655544444443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.2 Score=44.77 Aligned_cols=147 Identities=13% Similarity=0.056 Sum_probs=67.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHH
Q 035636 311 VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVC 390 (515)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.|.+....+.+.+++.++..+|+.+++++.++..++. ...-..+..++.+........... ............+
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~ 118 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAF-----QGLSRLLLYVLVL 118 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 4777777788888888888888888887653322221 111111111111111111000000 0001111111111
Q ss_pred HHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcc-chhhHHHHHHHHHHHHHH
Q 035636 391 VFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC-NMK-AGIFFFFAAWIVVMGLFA 465 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 465 (515)
+..+..+.. .|+..-+..+. ..+..+...|-.+....+|+++|+.+.+.+.- ..| ....++.+.+.++++++.
T Consensus 119 ~~~~l~G~~-~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 119 LIGLLIGME-IPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHH-HHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 122222222 23332222221 11224566788888899999999998887654 455 334444444444444333
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.1 Score=40.97 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035636 89 YLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELA 161 (515)
Q Consensus 89 ~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 161 (515)
.+..+..+++.+.+..++|-|.++.++...+...-. .-+-+.+..++-.-...|++.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 445556666666899999999999998887765432 223467888999999999999999887777766554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.3 Score=43.92 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHH-HHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHH--hcCCCCC--------Ccch--
Q 035636 314 GSEASLLSAVITGL-VNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAI--WLKPTGS--------LNKV-- 380 (515)
Q Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~-- 380 (515)
+++....+=....+ +.++...+-.++.+++++.++.............++++...- ...+++. .+..
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44444443332222 344556667899999999998877666666665555554321 0011110 0000
Q ss_pred ------hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035636 381 ------EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLC 444 (515)
Q Consensus 381 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (515)
..|...+.-+..-.-.+....-+.|.+++|..+.++..+..++.....++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111111122222458889999999999999999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.28 Score=47.08 Aligned_cols=119 Identities=8% Similarity=-0.000 Sum_probs=75.8
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCch---hhhhHHHH
Q 035636 347 ALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLE---TRTAGFAF 423 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~ 423 (515)
|.+.++.++..++.+++........ ...........+.+.+...+.+ +.-|....+..|.++++ .|.+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~----~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPS----LPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSS----C------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcch----hhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHH
Confidence 4566777778888777655442110 0011122344444444444443 33456666677888765 46677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccc
Q 035636 424 AVSTNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLP 470 (515)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (515)
+....++|+.++....+++.++.++...+....+..+.+++.++..+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999988888887777777777666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.24 Score=45.77 Aligned_cols=122 Identities=8% Similarity=0.012 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHH------hh------hhhHHHHHHHHHHHhhhhh--hhhhhh
Q 035636 89 YLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTS------AA------FHISMLILGRLALGIGVGF--ANQAVP 154 (515)
Q Consensus 89 ~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~------~~------~~~~~l~~~r~l~G~~~~~--~~~~~~ 154 (515)
.....+..++.|...|+..|+|++...+.+.-++.+.++ +. .+++.+..+-++.-.-.+. ....+.
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566677788999999999999988876443333332 22 2455555444443222111 111122
Q ss_pred h--hhhhcc----CCCCcchhh---hHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHH
Q 035636 155 L--FLSELA----PAKIRGALN---ISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALF 212 (515)
Q Consensus 155 ~--~i~~~~----~~~~r~~~~---~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~ 212 (515)
+ .-.||. ..+.+.... +.....-..-..++|.+.+.+.++ .+-|..-...++-+++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitf--vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITF--VSLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhccccee--echhhhhhhhHHHHHH
Confidence 2 123443 223333333 555555566678888888888664 3455544343433333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.15 E-value=1 Score=44.00 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhHHHhhhccCchhHHHhhhH
Q 035636 324 ITGLVNVFSTLVSVYAVDKAGRRALLLEAVV 354 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~ 354 (515)
...+..++..+....+..|+..+.-+..+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 4445555555666666677665444444433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.85 Score=44.34 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHH--cCCCChhHHHHHHH---HHHHHHHHHhhHHHhhhccCchhHHHh-hhHHHHHH
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQT--VGFGSEASLLSAVI---TGLVNVFSTLVSVYAVDKAGRRALLLE-AVVQMFIT 359 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~---~~~~~~~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~ 359 (515)
+.+.++.+..-........|.++++ .+.+-.+.+.+... +++=-+=..++=..-.+|+||||.-++ ...++++.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3444455554444334577888887 46665555443222 222212222223344567898876543 34444444
Q ss_pred HHHHH
Q 035636 360 QSIIG 364 (515)
Q Consensus 360 ~~~~~ 364 (515)
++.+.
T Consensus 85 m~~l~ 89 (544)
T PF13000_consen 85 MLYLS 89 (544)
T ss_pred HHHHH
Confidence 44433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.00 E-value=11 Score=38.47 Aligned_cols=158 Identities=10% Similarity=0.011 Sum_probs=95.3
Q ss_pred HhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-CchhHHHhhhHHHHHHHHHHHHHHHHhcCCCC-----
Q 035636 302 FYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKA-GRRALLLEAVVQMFITQSIIGIILAIWLKPTG----- 375 (515)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 375 (515)
....++....+.+...+.-.............+++++++|.+ ||-+.+.++..+..++..++.....+....+.
T Consensus 59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 344444456677777777777777777888889999999985 78888999988888887777766654432211
Q ss_pred --C--Ccchh-hHHHHHHHHHHHHh-hhcccccchhhhcccCCC----chhh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035636 376 --S--LNKVE-AIIVVVLVCVFVMG-FAWSWGPLGWLIPSETFP----LETR--TAGFAFAVSTNMLFTFLVAQAFLSML 443 (515)
Q Consensus 376 --~--~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 443 (515)
. ..... ....++...+.... ...+.-|....+-+|-++ .+.+ ..-+..+....++|..++..+..++.
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 0 01111 11122222222222 223334555566667776 2222 35566677777888888888888887
Q ss_pred hhccchhhHHHHHHHH
Q 035636 444 CNMKAGIFFFFAAWIV 459 (515)
Q Consensus 444 ~~~~~~~~~~~~~~~~ 459 (515)
++.+|...+....++.
T Consensus 219 ~~~~w~lgf~i~~~~~ 234 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLN 234 (571)
T ss_pred hcccceeeccHHHHHH
Confidence 7777554443333333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.29 Score=43.08 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=36.1
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhh
Q 035636 306 VLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEA 352 (515)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 352 (515)
++.++.|+...+++.++.......++...+.|-+.||.|||+..+.-
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvty 108 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeee
Confidence 34466788888888777766666777778888999999999876543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.2 Score=39.99 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhh-----ccCchhHHHh-hhH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVD-----KAGRRALLLE-AVV 354 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-----~~~~~~~~~~-~~~ 354 (515)
+.+..+...+..+..-..... ..|.+++..|.|-...+.......= .-.-++...+.| |+||||.-++ ...
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 335555555566666555444 8899998777766554443332211 112355566677 9998875443 333
Q ss_pred HHHHHHHHH
Q 035636 355 QMFITQSII 363 (515)
Q Consensus 355 ~~~~~~~~~ 363 (515)
+.+..+.++
T Consensus 108 llG~~mllL 116 (510)
T KOG3574|consen 108 LLGLFMLLL 116 (510)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.06 E-value=16 Score=35.72 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=83.3
Q ss_pred CCChhHHHHHHHHHH-HHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHh--cCCCC---------CCc-c
Q 035636 313 FGSEASLLSAVITGL-VNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIW--LKPTG---------SLN-K 379 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~-~ 379 (515)
.+++....+-....+ +.++..++-.++.+++.+.++............+++++...-. ..+++ +.+ .
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 445555555555555 5677778888999999999988877776666666666554310 01111 001 0
Q ss_pred --h-----hhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035636 380 --V-----EAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM 446 (515)
Q Consensus 380 --~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 446 (515)
+ ..|...+...+.-.-.+....-+.+..++|....++..+-+++.+...+++..+++.+..++.++.
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 0 012222222221111122222345777889999999999999999999999999999988887643
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.03 E-value=24 Score=33.34 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=42.6
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHH
Q 035636 288 LQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSII 363 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (515)
+.++....+--+..+-...++... |-+-...+..-.+-+...++...+.|...|+..|+|.+......--++.+..
T Consensus 34 ~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va 110 (503)
T KOG2601|consen 34 LGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA 110 (503)
T ss_pred HHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence 333333333334444445555554 4444444444555556666667777788899999888766555544443333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.02 E-value=18 Score=33.67 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=70.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHH-----HHHHHHhh----hhhHHHHHHHHHHHhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLV-----GVVLTSAA----FHISMLILGRLALGIG 145 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i-----~~~~~~~~----~~~~~l~~~r~l~G~~ 145 (515)
|=+--|.+++.+.|.....+|+...-++.|.--.-+.+..-.++..+ ..+-..|+ ++-+.+++.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33567788999999999999999988887754333223222222211 11222333 4667888999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 035636 146 VGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAM 191 (515)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 191 (515)
.|...|....++..... +-....+.....-.+|.+.+.++-.++
T Consensus 119 VG~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 119 VGAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HhcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence 99999999988876221 111222233333566666665554443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.62 E-value=3.1 Score=37.81 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhcchH-H-----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 035636 80 FLQLFTSCLYLAALIASFVASRVCSKQGRRP-T-----MQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAV 153 (515)
Q Consensus 80 ~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~-----~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 153 (515)
|.-|.+..|.+|..+. +=+-|+=+-+ . +..-..++.+...+..+.++++..++.-+.-|+-.|..++..
T Consensus 289 qYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT 363 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT 363 (409)
T ss_pred cchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence 4668888888765433 2222222222 1 222223445555666778999999999999999888888888
Q ss_pred hhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 035636 154 PLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAM 191 (515)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l 191 (515)
.--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 364 f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 364 FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88888888889999999999999999999988887655
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=85.49 E-value=6.3 Score=38.02 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.3
Q ss_pred HHHHHhhHHHhhhcc
Q 035636 329 NVFSTLVSVYAVDKA 343 (515)
Q Consensus 329 ~~~~~~~~~~l~d~~ 343 (515)
.++.....|++..|.
T Consensus 8 ~i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444455555554
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.95 E-value=5.8 Score=29.29 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=29.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 035636 414 LETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMKAG 449 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 449 (515)
++.++.+.++-...-.+++++....+|++.+++-..
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agT 72 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGT 72 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888999999999999999987533
|
|
| >KOG4255 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.82 E-value=40 Score=31.17 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHc
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQTV 311 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
..+..+..+.+.+....-.|...++.
T Consensus 16 valfG~gswa~vn~~wv~lp~lv~el 41 (439)
T KOG4255|consen 16 VALFGMGSWAGVNGLWVELPLLVKEL 41 (439)
T ss_pred HHHHccchHhhhcceeeehhHHHhhc
Confidence 33444444445555555567777765
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.43 E-value=33 Score=30.29 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred HHhhhccCchhHHHhhhHHHH
Q 035636 337 VYAVDKAGRRALLLEAVVQMF 357 (515)
Q Consensus 337 ~~l~d~~~~~~~~~~~~~~~~ 357 (515)
-.++.|+.-|++.+.+..++.
T Consensus 261 k~lAskIS~rtVt~~ggi~Fi 281 (294)
T KOG2881|consen 261 KYLASKISVRTVTLIGGILFI 281 (294)
T ss_pred HHHhhhheeEEEEEecchhHH
Confidence 356788887776665544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 515 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-42 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.38 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.38 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.29 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.09 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-49 Score=393.14 Aligned_cols=445 Identities=28% Similarity=0.522 Sum_probs=356.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhh
Q 035636 20 TVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVA 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~ 99 (515)
+++.+.+.++++++.+++|||.++++... |.+.++|..+. +.+.+.+..+.|++.+++.+|..+|++++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~---------~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQ---------NLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGG---------CCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC---------CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999999988654 66666663221 11124567788999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHH------------------hhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035636 100 SRVCSKQGRRPTMQIASFFFLVGVVLTS------------------AAFHISMLILGRLALGIGVGFANQAVPLFLSELA 161 (515)
Q Consensus 100 g~l~dr~Grr~~~~~~~~l~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 161 (515)
|+++||+|||++++++.+++.+++++++ +++|++.++++|+++|+|.|+..+...++++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999 4789999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC------CCchHHHHHhhhHHHHHHHHhhccccCchhhHHhhCChHH
Q 035636 162 PAKIRGALNISFQLFITIGIFIANMVNYAMSNVH------PYGWRLSLAIAGVPALFLCVGSMSICETPTSLIERGRLEE 235 (515)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 235 (515)
|+++|++..++.+.+..+|.++++.++..+.... ...||+.+.+..++.++..+..+++||||+|+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999999988775432 2569999999999999988888999999999999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCC
Q 035636 236 GRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGS 315 (515)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 315 (515)
+.+.+++..+.++.+++..+.++..+.+++.. ..... ...++.........+.+..+.+.+..|.+.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 99988887655444333333333222222211 11111 223455666667777778888889999999999888888
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHh
Q 035636 316 EASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMG 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
........+.++..+++.++++++.||+|||+.+..+.....++.+.+..... .....+..++...++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999988888888777665543 223344455555566666
Q ss_pred hhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc------c-chhhHHHHHHHHHHHHHHHhc
Q 035636 396 FAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNM------K-AGIFFFFAAWIVVMGLFAMFL 468 (515)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 468 (515)
+..++.++.+.+.+|.+|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 677777888899999999999999999999999999999998887764432 2 345677788888888888899
Q ss_pred cccCCCCChHhhHHHHHcccc
Q 035636 469 LPETKGVPVDAVTERVWKQHW 489 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ 489 (515)
+||||+|++||+ |+.+|++.
T Consensus 463 ~PETkg~tLeei-~~~f~~~~ 482 (491)
T 4gc0_A 463 VPETKGKTLEEL-EALWEPET 482 (491)
T ss_dssp CCCCTTCCHHHH-GGGTC---
T ss_pred ecCCCCCCHHHH-HHHhCCCC
Confidence 999999999998 77776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=317.56 Aligned_cols=398 Identities=12% Similarity=0.031 Sum_probs=292.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHh
Q 035636 19 ITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFV 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~ 98 (515)
.+++++.....++++.+..+++...+++.. | .+ .+++ .+..+.|++.+++.++..+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~-------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAM--P----YL-------------VEQG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--H----HT-------------TSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HH-------------HHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 344556666677777888887776654332 2 22 4556 78999999999999999999999
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHH
Q 035636 99 ASRVCSKQGRRPTMQIASFFFLVGVVLTSA----AFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQ 174 (515)
Q Consensus 99 ~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (515)
+|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc-hHHHHHhhhHHHHHHHHhh-ccccCchhhHHhhCChHHHHHHHHHHhCCCcchHH
Q 035636 175 LFITIGIFIANMVNYAMSNVHPYG-WRLSLAIAGVPALFLCVGS-MSICETPTSLIERGRLEEGRVVLQRIRGVANVDNE 252 (515)
Q Consensus 175 ~~~~~G~~i~~~l~~~l~~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
.+.++|.+++|.+++.+.+. .+ ||+.|++.+++.++..++. +++||+|+....+++.+.. . +.+
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~ 227 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------N--DYP 227 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------C--C--
T ss_pred HHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------c--ccc
Confidence 99999999999999887543 57 9999999998877765544 5588887643211111100 0 000
Q ss_pred HHHHHHHHHhhcccCcchhhh-cccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHH
Q 035636 253 FDSIVHACEMANQVTKPFSKL-MKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNV 330 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 330 (515)
.+ . +.+++++.+.++. .+...+++.++...+..+........+..+.|.++++ .|++..+.+.......++.+
T Consensus 228 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 228 DD-Y----NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 302 (451)
T ss_dssp ----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHH
T ss_pred cc-c----hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00 0 0001111122222 2233445667777777777777778888999999987 69999999999999999999
Q ss_pred HHHhhHHHhhhcc--CchhHHHhhhHHHH-HHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhh
Q 035636 331 FSTLVSVYAVDKA--GRRALLLEAVVQMF-ITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLI 407 (515)
Q Consensus 331 ~~~~~~~~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (515)
++.++.+++.||+ +||+.+..+..+.. ++.+++... +....+.......+.+.+.... .+....+
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 370 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGP-VMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhch-HHHHHHH
Confidence 9999999999999 99988776655544 333332210 1113333344444444433332 3444577
Q ss_pred cccCCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 035636 408 PSETFPLETRTAGFAFAVSTNML-FTFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMF 467 (515)
Q Consensus 408 ~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (515)
..|.+|++.|+++.|+.+.+..+ |..++|.+.|.+.+..++...+...++..+.+.+..+
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999 9999999999999998865554444444444343333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=297.51 Aligned_cols=368 Identities=12% Similarity=0.098 Sum_probs=279.4
Q ss_pred HHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 035636 26 CVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSK 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr 105 (515)
....+++..+..+++....++. +|.+.+++ |++..+.|++.+++.++..++++++|+++||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDIL--LPQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS-----------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445556677777777665543 35565555 8999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHH
Q 035636 106 QGRRPTMQIASFFFLVGVVLT---SAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIF 182 (515)
Q Consensus 106 ~Grr~~~~~~~~l~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 182 (515)
+|||++++.+.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.+
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-ccCCCc------------------------hHHHHHhhhHHHHHHHHhhcc--ccCchhhHHhhCChHH
Q 035636 183 IANMVNYAMS-NVHPYG------------------------WRLSLAIAGVPALFLCVGSMS--ICETPTSLIERGRLEE 235 (515)
Q Consensus 183 i~~~l~~~l~-~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~ 235 (515)
+++.+++.+. +.. .. ||+.|++.+++.++..++.++ .||+++...++++
T Consensus 168 ~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--- 243 (438)
T 3o7q_A 168 IAVVFGQSLILSNV-PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK--- 243 (438)
T ss_dssp HHHHHTTHHHHTSS-CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS---
T ss_pred HHHHHHHHHHhccc-ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc---
Confidence 9999999986 432 22 999998887776665544433 4555431100000
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHc-CC
Q 035636 236 GRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVL-FQTV-GF 313 (515)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~ 313 (515)
+++.+.++++.++ ++.++...+..+...........+.|.+ +++. |+
T Consensus 244 ---------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 244 ---------------------------QGSFSASLSRLAR----IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp ---------------------------TTSHHHHHHHHTT----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred ---------------------------ccchhhhHHHHHh----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 0001122333433 3445666666666666677788888988 8776 99
Q ss_pred CChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHH
Q 035636 314 GSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFV 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+++... +.. + ......+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~-~~~~~~~~g 358 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-V-GLIALTLCS 358 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHH-H-HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCc-H-HHHHHHHHH
Confidence 99999999999999999999999999999999999988887776665554441 122 2 222334444
Q ss_pred HhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHH
Q 035636 394 MGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AGIFFFFAAWIVVMGLF 464 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 464 (515)
.+.+.. .+..+.+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..+ +...+...+++.+...+
T Consensus 359 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 359 AFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444333 356677777999966 888888876 677999999999999999988 66555555444444333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=274.14 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=270.8
Q ss_pred HHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035636 29 IAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGR 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Gr 108 (515)
+++++.+..+++.....+. +|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA--IADMARD-----------------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHTT-----------------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHHH-----------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566666676665533 2444444 48999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 035636 109 RPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVN 188 (515)
Q Consensus 109 r~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 188 (515)
|+++..+..+.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHhhhHHHHHHHHh-hccccCchhhHHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccC
Q 035636 189 YAMSNVHPYGWRLSLAIAGVPALFLCVG-SMSICETPTSLIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVT 267 (515)
Q Consensus 189 ~~l~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+.+.+. .+||+.|++.+++.++..+. ..++||+++...++ ++.+
T Consensus 145 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~ 189 (375)
T 2gfp_A 145 GLLDTM--WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------------TRLL 189 (375)
T ss_dssp HHSSCH--HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------------CCTT
T ss_pred HHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------------ccHH
Confidence 998653 68999999999888777764 45578876421000 1112
Q ss_pred cchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCch
Q 035636 268 KPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQT-VGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRR 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 346 (515)
+++++.++ +|.++...+..+...........+.|.++++ .|.++.+.+.......++.+++.++.+++.||++++
T Consensus 190 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFG----NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhc----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333 3556666666666666677777888888776 688889999999999999999999999999998872
Q ss_pred hHHHhhhHH-HHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHH
Q 035636 347 ALLLEAVVQ-MFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAV 425 (515)
Q Consensus 347 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 425 (515)
...+... ...+...+..... ...+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+
T Consensus 266 --~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 266 --MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp --HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHH
Confidence 2222222 2222221111110 1123333444444555554443 4555677789998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 035636 426 STNMLFTFLVAQAFLSMLCNMKAGIFFFFAAWIV 459 (515)
Q Consensus 426 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (515)
....+|..++|.+.+.+.+..++...+...++.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 9999999999999999988766655555544333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=268.09 Aligned_cols=392 Identities=14% Similarity=0.117 Sum_probs=257.6
Q ss_pred CCcccCCcchHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 035636 71 DNYCKYDNQFLQLFTSCLYLAALIASFVASRVCSK-QGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFA 149 (515)
Q Consensus 71 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 149 (515)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccc-cCch--
Q 035636 150 NQAVPLFLSELAPAKI--RGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSI-CETP-- 224 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~esp-- 224 (515)
.+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+. .+||+.|++.++..++..+...+. ++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999998 67788889999999999999999998664 689999999877766655544332 2211
Q ss_pred --hhHHhhCChHHHHHHHHH----------------HhCCCcchHHHHHHHHH---------HHhhcccCcchhhhcccC
Q 035636 225 --TSLIERGRLEEGRVVLQR----------------IRGVANVDNEFDSIVHA---------CEMANQVTKPFSKLMKRS 277 (515)
Q Consensus 225 --~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 277 (515)
+....+.+.++.++..+. ..+..+.++........ ....++.+.+ .. ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~ 279 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--ST--EH 279 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HH--HH
Confidence 000111122222222221 11111111111100000 0000000000 00 11
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHH-----h
Q 035636 278 SRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLL-----E 351 (515)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~-----~ 351 (515)
.+....+...+..+.....+.....+.|.+.++. +.+....+.......+..+++.++.+++.||++||+... .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 280 LRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 1111122233333333344445556667777664 666566777888888999999999999999999886554 5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHH
Q 035636 352 AVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLF 431 (515)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g 431 (515)
+..+.+++..++........ ...+...+.......+.+.+.... .+..+.++.|.+|++.|+++.|+.+....+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYG----TSGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCC----CCTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 55555555554444321100 001123334444444445444433 4556778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhccccCC
Q 035636 432 TFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAMFLLPETK 473 (515)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
..+++.+.+.+.+......+...+++.++..++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877655455566666666666665555555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=243.93 Aligned_cols=143 Identities=14% Similarity=0.204 Sum_probs=130.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQ-GRRPTMQIASFFFLVGVVLTSAAF-HISMLILGRLALGIGVGFANQA 152 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~ 152 (515)
+++..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.++++|++.|++.+...+.
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 38999999999999999999999999999999 999999999999999999999999 9999999999999999999999
Q ss_pred hhhhhhhccCCCCcchhhhH---HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 153 VPLFLSELAPAKIRGALNIS---FQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
..+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .+||+.|++.+++.++..+...+
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 8999999999999999988654 68999999988887766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=242.31 Aligned_cols=356 Identities=13% Similarity=0.063 Sum_probs=222.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHH---HHHHhhhhh-HHHHHHHHHHHhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGV---VLTSAAFHI-SMLILGRLALGIGVGFA 149 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~~~~ 149 (515)
+|+|..+.|++.+.+.++..++++++|+++||+|||++++.+..+++++. ..+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999888776532 212233221 12345566666665555
Q ss_pred hhhhhhhhhhccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhccccCchhhH
Q 035636 150 NQAVPLFLSELAPA--KIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMSICETPTSL 227 (515)
Q Consensus 150 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~esp~~~ 227 (515)
.+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+||+.|++.++..++..+..++.+|+|+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 55444555555433 345777788888889999999999998865 4799999988877665555555554433210
Q ss_pred HhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 035636 228 IERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVL 307 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (515)
.+.++. .+. +.++....++++.++ ++.++...+..+.....+.....+.|.+
T Consensus 195 ---~~~~~~----------~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 195 ---ATVANA----------VGA-----------NHSAFSLKLALELFR----QPKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp ---SCSSSS----------SSS-----------CCCCCCHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccc----------ccc-----------ccccccHHHHHHHhc----CCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000 000000011223333 2334444433333333344445567776
Q ss_pred HHHc-C---CCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Q 035636 308 FQTV-G---FGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAI 383 (515)
Q Consensus 308 ~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
+.+. + .+....+....+..++.+++.++.+++.||++||+.+..+..+.++..+++.. . ...+
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------------~-~~~~ 313 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------------A-TSAL 313 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------------C-CSHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------------h-ccHH
Confidence 6553 2 22445567777778888999999999999999999888776666555433322 1 1122
Q ss_pred HHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHH
Q 035636 384 IVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFA-VSTNMLFTFLVAQAFLSMLCNMKAGIFF-FFAAWIVVM 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 461 (515)
..++...+...+.... .+..+.+++|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+ ..+++.++.
T Consensus 314 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHTTHHHHHHHHH-HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 2222222233322221 223356778999999999999994 7888999999999999999887754444 444444444
Q ss_pred HHHHHhccccCCC
Q 035636 462 GLFAMFLLPETKG 474 (515)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (515)
.++.++..+|+++
T Consensus 393 ~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 393 TLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTTSSCCSCT
T ss_pred HHHHHhhhcCCCc
Confidence 4444444554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-12 Score=124.79 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=127.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHHHHHHHH-HHHHHHHhh--hhhHHHHHHHHHHHhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQ--GRRPTMQIASFFFL-VGVVLTSAA--FHISMLILGRLALGIGVGF 148 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~~~~~~~l~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 148 (515)
+|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999999 99999988887776 666666666 3677888889999999999
Q ss_pred hhhhhhhhhhhccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 149 ANQAVPLFLSELAPAKIRGALNISFQLFITI-GIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
..+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+. .||+..|++.++..++..++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999998664 57999999988887776666554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=125.75 Aligned_cols=147 Identities=13% Similarity=0.157 Sum_probs=124.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 035636 77 DNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVPLF 156 (515)
Q Consensus 77 s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 156 (515)
+....++..++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999999888888888888888888888888888887777778899
Q ss_pred hhhccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchh
Q 035636 157 LSELAPAKIRGALNIS-FQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPT 225 (515)
Q Consensus 157 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~ 225 (515)
+.|.+|++.|+++.+. ++....+|.+++|.+++.+.+. .|++..|.+.+++.++..++.++ .||.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH--SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999998 4788889999999999988653 57889999888887776665444 666544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-11 Score=118.51 Aligned_cols=156 Identities=9% Similarity=-0.021 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHH
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQ 360 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (515)
..+..+.+..+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33444555555555555677778888888999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035636 361 SIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFL 440 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 440 (515)
++...... ..+.+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus 106 ~~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 106 ALFWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77743221 123444555555555555444 3455777899999999999999999999999999999999
Q ss_pred HHH-hhcc
Q 035636 441 SML-CNMK 447 (515)
Q Consensus 441 ~~~-~~~~ 447 (515)
.+. +..+
T Consensus 175 ~l~~~~~~ 182 (438)
T 3o7q_A 175 SLILSNVP 182 (438)
T ss_dssp HHHHTSSC
T ss_pred HHHhcccc
Confidence 988 4443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=122.57 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhHHHHHHH------cCCCChhHHHHHHHHHHHHHHHHhhHHHhhhc-cCchhHHHhhh
Q 035636 281 PLVIAILLQVFQQFTGINAIMFYAPVLFQT------VGFGSEASLLSAVITGLVNVFSTLVSVYAVDK-AGRRALLLEAV 353 (515)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~ 353 (515)
+.++...+..+.....++....+.+.++++ .|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 345555555555556666676677766654 79999999999999999999999999999999 89999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchh--hhhHHHHHHHHHHHH
Q 035636 354 VQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLET--RTAGFAFAVSTNMLF 431 (515)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~g 431 (515)
.+..++.++.... .+.+...+...+.+.+.+.. .+....++.|.+|++. |+.+.++.+....+|
T Consensus 93 ~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 93 VLIMLGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence 8888777666541 22334444444555544433 3555677889999988 778888899999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 035636 432 TFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGL 463 (515)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (515)
..++|.+.+.+.+..++...+...++..+...
T Consensus 159 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998886655444444333333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=117.57 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=126.9
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHH
Q 035636 286 ILLQVFQQFTGINAIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGI 365 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (515)
+.+..+.............|.+.++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+.....++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 33444444555566667778888888999999999999999999999999999999999999999988888888777665
Q ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035636 366 ILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCN 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (515)
.. +.+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 85 ~~-------------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 85 TS-------------SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HH-------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred hc-------------cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 32 233344444444444433 3455567778999999999999999999999999999999998877
Q ss_pred ccchhhHHHHHH-HHHHHHHHHhccccC
Q 035636 446 MKAGIFFFFAAW-IVVMGLFAMFLLPET 472 (515)
Q Consensus 446 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 472 (515)
.++...+...++ ..+..+...+..||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 775544443333 333333244445544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-11 Score=117.88 Aligned_cols=171 Identities=10% Similarity=0.038 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHH-HcC------CCChhHHHHHHHHHHHHHHHHhhHHHhhhcc-CchhHHHhhhH
Q 035636 283 VIAILLQVFQQFTGINAIMFYAPVLFQ-TVG------FGSEASLLSAVITGLVNVFSTLVSVYAVDKA-GRRALLLEAVV 354 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~ 354 (515)
++...+..+.....++....+.+.+++ +.| ++..+.++..+...++..++.++.|++.||+ |||+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 333444445555556666777777665 468 9999999999999999999999999999999 99999998888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHH---HHHHHHHH
Q 035636 355 QMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAF---AVSTNMLF 431 (515)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~g 431 (515)
+..++.+++... +.+.+..++...+.+.+.+.. .+....++.|.+|++.|+++.+. .+....+|
T Consensus 94 ~~~~~~~~~~~~------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 94 IYCVGHAFLAIF------------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp HHHHHHHHHHHT------------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 877777666542 112334444444555544433 45556778899999999776666 88889999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 035636 432 TFLVAQAFLSMLCNMKAGIFFFFAAWIVVMGLFAM 466 (515)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (515)
..++|.+.+.+.+..++...+...++..+...+..
T Consensus 161 ~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 161 SFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776654444444443333333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-10 Score=108.88 Aligned_cols=150 Identities=18% Similarity=0.103 Sum_probs=107.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH-HHhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF----HISMLILGRLA-LGIGVGFA 149 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l-~G~~~~~~ 149 (515)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++.-++ .+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 45566666777778888999999999999999999999999988888776655431 11222222222 22222234
Q ss_pred hhhhhhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC----CCchHHHHHhhhHHHHHHHHhh-ccccCch
Q 035636 150 NQAVPLFLSELAPAKIRGALNISFQLFITIGIFIANMVNYAMSNVH----PYGWRLSLAIAGVPALFLCVGS-MSICETP 224 (515)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~----~~~wr~~f~~~~~~~~~~~~~~-~~~~esp 224 (515)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ..++...|++.++++++..+.. +++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999999999988887766553210 1345567888888877766655 5699985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.43 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-39 Score=313.43 Aligned_cols=413 Identities=12% Similarity=0.021 Sum_probs=287.5
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHhhhhhhhhcccccccccchhHHHhhhhhhhccccccccCCcccCCcchHHHHHHHH
Q 035636 9 GGDMPVFEGRITVYVVACVIIAAFGGLMFGYDIGISGGVTAMDDFLERFFPRVYEKKKHAHEDNYCKYDNQFLQLFTSCL 88 (515)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~ 88 (515)
+-++++.++..++++|.....+.++.+..+++...++.+. | +.+ |+|+|.++.|++.+++
T Consensus 9 ~~p~~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~--p-~~~-----------------~~g~s~~~~g~~~s~~ 68 (447)
T d1pw4a_ 9 RLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM--P-YLV-----------------EQGFSRGDLGFALSGI 68 (447)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--H-HTT-----------------SSTTCSSCHHHHHHHH
T ss_pred CCChhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHH-----------------HhCcCHHHHHHHHHHH
Confidence 3333344445556667777777777888777776654322 2 222 2389999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCC
Q 035636 89 YLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAF----HISMLILGRLALGIGVGFANQAVPLFLSELAPAK 164 (515)
Q Consensus 89 ~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 164 (515)
.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|++
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 148 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK 148 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764 7789999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc-ccCchhhHHhhCChHHHHHHHHHH
Q 035636 165 IRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS-ICETPTSLIERGRLEEGRVVLQRI 243 (515)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~ 243 (515)
+|++++++.+.+..+|.++++.+++.+.... .+||+.|++.+++.++..++.++ .+|+|+........+..
T Consensus 149 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 220 (447)
T d1pw4a_ 149 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK------- 220 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------
T ss_pred cccccccccccccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh-------
Confidence 9999999999999999999999888765433 47999999988887776665544 66665432211111100
Q ss_pred hCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCChhHHHHH
Q 035636 244 RGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPVLFQTV-GFGSEASLLSA 322 (515)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 322 (515)
++..++.. +..+++........+...+++.++......++.....+....+.|.++++. +++..+.+...
T Consensus 221 ------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T d1pw4a_ 221 ------NDYPDDYN---EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291 (447)
T ss_dssp ------CC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHH
T ss_pred ------hhcccchh---hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhh
Confidence 00000000 000111111122223344456677777777777777778888888888664 89999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHhhhccccc
Q 035636 323 VITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEAIIVVVLVCVFVMGFAWSWGP 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (515)
....+..+++.++.+++.||++|++..........+.......... . .....+...+..++.+++.. ...+
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~g~~~~-~~~~ 362 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---N-----PAGNPTVDMICMIVIGFLIY-GPVM 362 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---C-----CTTCHHHHHHHHHHHHHHHT-HHHH
T ss_pred hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh---c-----ccccHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999876555444433333222222111 0 12233333444444443332 2234
Q ss_pred chhhhcccCCCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHh
Q 035636 403 LGWLIPSETFPLETRTAGFAFAVSTNMLF-TFLVAQAFLSMLCNMKAGIFFF-FAAWIVVMGLFAMF 467 (515)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 467 (515)
....+..|.+|++.|+++.|+.+.+.+++ ..++|.+.|.+.+..|+...+. ..++.++..++..+
T Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 55677789999999999999999988875 5667889999999998654443 34434444444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.7e-28 Score=235.90 Aligned_cols=359 Identities=13% Similarity=0.068 Sum_probs=233.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHhhhhhh
Q 035636 74 CKYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISML----ILGRLALGIGVGFA 149 (515)
Q Consensus 74 ~~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l----~~~r~l~G~~~~~~ 149 (515)
+|+|..++|++.+++.++..++++++|+++||+|||++++++..+..++.++..+..+.... ++.+.+.+.+.+..
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccc
Confidence 38999999999999999999999999999999999999999999999999888887665544 34555555555544
Q ss_pred hhhhhhhhhhccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHH-HHHhhccccCchhh
Q 035636 150 NQAVPLFLSELAPA--KIRGALNISFQLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALF-LCVGSMSICETPTS 226 (515)
Q Consensus 150 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~esp~~ 226 (515)
.........+..++ +++.+..+........+..+++.+++.+.+ .+|+..+........+ ..+..+..+|+|+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp GTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred ccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc---ccccccccchhhHHHHHHHHHHHHhcccccc
Confidence 44444444433332 334567778888899999999999999876 4566666666555544 44444557776542
Q ss_pred HHhhCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcccCcchhhhcccCCchhHHHHHHHHHHHHhhhHHHHHHhHHH
Q 035636 227 LIERGRLEEGRVVLQRIRGVANVDNEFDSIVHACEMANQVTKPFSKLMKRSSRPPLVIAILLQVFQQFTGINAIMFYAPV 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
. ++.++ +++++++.......+.... +..+....................+.
T Consensus 195 ~---~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 195 A---TVANA-------------------------VGANHSAFSLKLALELFRQ-PKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp S---CSSHH-------------------------HHSCCCCCCHHHHHHHTTS-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhhhh-------------------------hhhhccccccccccccccc-ccccchhhhhHHHHHHHHhhhccccc
Confidence 1 11111 0011111111111111111 11111111111111222222222233
Q ss_pred HHHHc----CCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhh
Q 035636 307 LFQTV----GFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLNKVEA 382 (515)
Q Consensus 307 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (515)
+.... +.+....+.......++..++..+.+++.||.++|+.+..+..+.+++.+++.. ..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 312 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------------ATSA 312 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------------CCCH
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-------------cccc
Confidence 22222 334456677778888899999999999999999999998888877777666554 1233
Q ss_pred HHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHH
Q 035636 383 IIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAV-STNMLFTFLVAQAFLSMLCNMKAG-IFFFFAAWIVV 460 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 460 (515)
+...+...+.+.+.+.. .+....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|+. .+++.+++.++
T Consensus 313 ~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~ 391 (417)
T d1pv7a_ 313 LEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 44444445555554443 3455677789999999999999864 566799999999999999999854 45566666666
Q ss_pred HHHHHHhccccCCCCChH
Q 035636 461 MGLFAMFLLPETKGVPVD 478 (515)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (515)
..++..+.+++++..+..
T Consensus 392 ~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 392 FTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHhhcCCCccchh
Confidence 666666777766655543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=3e-13 Score=129.90 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=119.9
Q ss_pred HHHHhHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhhHHHhhhccCchhHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 035636 299 AIMFYAPVLFQTVGFGSEASLLSAVITGLVNVFSTLVSVYAVDKAGRRALLLEAVVQMFITQSIIGIILAIWLKPTGSLN 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (515)
.+....|.+ ++.|++..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++.......
T Consensus 43 ~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------- 112 (447)
T d1pw4a_ 43 NFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------- 112 (447)
T ss_dssp SHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH---------
T ss_pred HHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh---------
Confidence 344445644 5679999999999999999999999999999999999999999999888887777654321
Q ss_pred chhhHHHHHHHHHHHHhhhcccccchhhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch-hhHHHHH
Q 035636 379 KVEAIIVVVLVCVFVMGFAWSWGPLGWLIPSETFPLETRTAGFAFAVSTNMLFTFLVAQAFLSMLCNMK-AG-IFFFFAA 456 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~ 456 (515)
....+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+...+..+ +. .++..+.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 112233444444444444433 34556677899999999999999999999999999998888777654 33 4455555
Q ss_pred HHHHHHHHHHhccccCC
Q 035636 457 WIVVMGLFAMFLLPETK 473 (515)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (515)
+..+..++.+...++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHCCCSS
T ss_pred hHHHHHHHHHHhcccch
Confidence 55555555555555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=5.2e-13 Score=126.44 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=129.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 035636 75 KYDNQFLQLFTSCLYLAALIASFVASRVCSKQGRRPTMQIASFFFLVGVVLTSAAFHISMLILGRLALGIGVGFANQAVP 154 (515)
Q Consensus 75 ~~s~~~~g~~~s~~~l~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 154 (515)
+.+....+...+...++..++.++.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCcchhhhHH-HHHHHHHHHHHHHHHHHhhccCCCchHHHHHhhhHHHHHHHHhhcc
Q 035636 155 LFLSELAPAKIRGALNISF-QLFITIGIFIANMVNYAMSNVHPYGWRLSLAIAGVPALFLCVGSMS 219 (515)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (515)
+++.|.+|+++|+++.++. +....+|..++|.+++.+.+. .||+..|++.+++.++..++..+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 567789999999999999664 68999999988888776666555
|