Citrus Sinensis ID: 035915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEcccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccEEEEEcccccccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccccccccccccEEEEcccEcccHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHcHHHHHccccccccHHHcEccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHccEEEEEEccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHccccEEEEEcccccccccHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHccccEEEEEcHHccccccccccccccccEEEEEEHHHccccccccEEEEEEHHHHHHHcccccccc
Coil and Loop (DISEMBL)
megeykpdlsasipksptengrpssmVIKKAHTLIPAHIVAEAISTLhgldlrwsgpitptemQYVEQYVLAkypqyaglvegekvdlsslcineessetgpddrrksprngfrsepstpsfgsnlpdldrtqlepsrLLDIltkkssfpgsfisipeIQARNKVlkhcglpddeylvlFTPNYRDAMMLVgesypffrgnfYMTIIGEELDYVREFAsfkeskvilapEAWLDLRIKGSQLSQYFRRKckhtpkglfsypadingtrysMHWISEAHRNSWHVLLDATALVVGedrlnlalhrpdfvlcnldntqnaqpskiTCLLIRkksfdtstssahahe
Flexible Loop (DISEMBL)
megeykpdlsasipksptengrpSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINeessetgpddrrksprngfrsepstpsfgsnlpdldrTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRkckhtpkglfsypaDINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKsfdtstssahahe
Low Complexity Region (SEG)
MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE
Disordered region (IsUnstruct)
**************************VIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCI**********************************************LDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIR***************
Disordered Region (DISOPRED)
********************************TLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEES*********************TPSFGSNLPDLDRTQLEPSRLLDILT***********IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQ******KHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD**********
Disordered Region (DISEMBL)
***********************SSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINE**************************FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS************
Disordered Region (DISPRO)
*******DLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q9N0E7	882	Molybdenum cofactor sulfu	yes	no	0.508	0.198	0.270	5e-08
Q8IU29	822	Molybdenum cofactor sulfu	N/A	no	0.468	0.195	0.276	2e-06
A8X493	707	Molybdenum cofactor sulfu	N/A	no	0.578	0.281	0.299	5e-06
Q14CH1	862	Molybdenum cofactor sulfu	yes	no	0.415	0.165	0.272	2e-05
Q96EN8	888	Molybdenum cofactor sulfu	yes	no	0.517	0.200	0.275	2e-05
Q655R6	824	Molybdenum cofactor sulfu	no	no	0.424	0.177	0.265	0.0003

>sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 36/211 (17%)

Query: 160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF------RGNFYMTIIGEELDY 213
           Q R ++L H     ++Y V+FT     A+ LV E++P+        G+ +  +       
Sbjct: 96  QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 155

Query: 214 V---REFASFKESKVILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GT 267
           V   +  A+   S + + PE  W        +            P  LF YPA  N  GT
Sbjct: 156 VGMRKITAAMNVSSIPVRPEDMW-----SAERQDAAAAGDPAGQPPHLFCYPAQSNFSGT 210

Query: 268 RYSMHWISEAHR---------NSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNA 318
           RY + WI E              W VLLDA A  VG   L+L++H+ DFV  +       
Sbjct: 211 RYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAF-VGTSPLDLSVHQADFVPISFYKIFGF 269

Query: 319 QPSKITCLLI--------RKKSFDTSTSSAH 341
            P+ +  LL+        RK  F   T++A+
Sbjct: 270 -PTGLGALLVNNRLAALLRKTYFGGGTAAAY 299

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q8IU29|MOCOS_BOMMO Molybdenum cofactor sulfurase OS=Bombyx mori GN=mal PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 45/206 (21%)

Query: 160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR--------GNF------YMT 205
           Q R  +LKH       Y ++FT     A+ LV ES+ F +        G+F      + +
Sbjct: 69  QIRCLILKHFNTDPSTYTLIFTSGTTQALKLVIESFQFMKNEDDDLNCGSFVYLEDNHTS 128

Query: 206 IIGEELDYVREFASFKESKVI-LAPEAWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPA- 262
           ++G     +RE A  K+++V+ +A E +L+ +  K  Q S+Y      +    L +YPA 
Sbjct: 129 VVG-----LRELAVDKDAEVVHIAHEDFLNVINTKAKQTSKY-----TNGGNCLVAYPAQ 178

Query: 263 -DINGTRYSMHWISEAH---------------RNSWHVLLDATALVVGEDRLNLALHRPD 306
            + NG +Y ++ I                    + W+VLLDA A  V   +L+LA  +PD
Sbjct: 179 SNFNGFKYPLNCIENIKNGCLNNHLKKHLCEINSDWYVLLDAAAY-VATSKLDLAKVQPD 237

Query: 307 FVLCNLDNTQNAQPSKITCLLIRKKS 332
           FV  +        P+ +  LL++K S
Sbjct: 238 FVSLSFYKIF-GFPTGLGALLVKKSS 262

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Bombyx mori (taxid: 7091)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|A8X493|MOCOS_CAEBR Molybdenum cofactor sulfurase OS=Caenorhabditis briggsae GN=CBG07703 PE=3 SV=3

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 28/227 (12%)

Query: 123 GSNLPDLDRTQLEPSRLLD---ILTKKSSFPGSFISIPEI--QARNKVLKHCGLPDDEYL 177
           GS LP   +TQLE    L    IL    S   + I   +I   AR+++L++     D+Y 
Sbjct: 8   GSTLPS--KTQLEELAKLQTQLILANPHSHHSTAIKTQQIVSSARHRILRYFNTTADDYF 65

Query: 178 VLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYV-----REFASFKES--KVILAPE 230
           V+FT N   A+ +V E++ F  G+     +  E+  V       FA F +S   V+    
Sbjct: 66  VVFTNNTTHALKIVAENFNF--GHRTQEGVVSEISAVLKGGPSNFAYFNDSHHSVVGLRH 123

Query: 231 AWLDLRIKGSQLSQ-YFRRKCKHTPK---GLFSYPADINGTRYSMHW-ISEAHRNSWHVL 285
             L      S +++   + +C   PK    LF + A  N   + + + I+E   + W V 
Sbjct: 124 VVLGKVDAISCVNEDVVKEEC--IPKVENSLFVFTAMSN---FLIPFQINEKLISGWSVC 178

Query: 286 LDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS 332
           +DA ALV G  RL+L  HRP+FV  +        P+ I  LL++K S
Sbjct: 179 VDAAALVSGT-RLDLTAHRPNFVAFSFYKI-FGYPTGIGALLVKKDS 223

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 26/169 (15%)

Query: 160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR------GNFYMTIIGEELDY 213
           Q R ++L H     ++Y+V+FT     A+ LV E++P+        G+ +  +       
Sbjct: 96  QVRYRILTHFHTTPEDYIVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSV 155

Query: 214 V---REFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR 268
           V   +  A+   + + + PE   D+     + +      C+  P  LF YPA  N  GTR
Sbjct: 156 VGMRKVAAAMSVTSIPVKPE---DMWSAEGKDAGACDPDCQ-LPH-LFCYPAQSNFSGTR 210

Query: 269 YSMHWISEAHR---------NSWHVLLDATALVVGEDRLNLALHRPDFV 308
           Y + W+ E              W VLLDA A  V    L+L+ H+ DF+
Sbjct: 211 YPLSWVEEVKSGRRSPVNAPGKWFVLLDA-ASYVSTSPLDLSAHQADFI 258

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF------RGNFYMTIIGEELDY 213
           Q R ++L H     ++Y V+FT     A+ LV E++P+        G+ +  +       
Sbjct: 96  QVRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAFPWVSQGPESSGSRFCYLTDSHTSV 155

Query: 214 VREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM 271
           V          VI  P    DL     + +      C+  P  LF YPA  N  G RY +
Sbjct: 156 VGMRNVTMAINVISTPVRPEDLWSAEERSASASNPDCQ-LPH-LFCYPAQSNFSGVRYPL 213

Query: 272 HWISEAHR---------NSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSK 322
            WI E              W VLLDA A  V    L+L+ H+ DFV  +        P+ 
Sbjct: 214 SWIEEVKSGRLHPVSTPGKWFVLLDA-ASYVSTSPLDLSAHQADFVPISFYKIFGF-PTG 271

Query: 323 ITCLLI--------RKKSFDTSTSSAH 341
           +  LL+        RK  F   T+SA+
Sbjct: 272 LGALLVHNRAAPLLRKTYFGGGTASAY 298

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q655R6|MOCOS_ORYSJ Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 46/192 (23%)

Query: 161 ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-------TIIGEELDY 213
           AR++VLK+      EY  +FT     A+ LVGE +P+ R + YM       +++G     
Sbjct: 87  ARHQVLKYFNASPREYKCIFTSGATAALKLVGECFPWSRESCYMYTMENHNSVLG----- 141

Query: 214 VREFASFKESKVI-LAPEAWLDLRIKGSQLSQY--FRRKCKHTPK--------------- 255
           +RE+A  K + V+ +  E   DL       S Y   RR  +   K               
Sbjct: 142 IREYALSKGATVLAVDVEEGADLAKDNGSYSLYKISRRTNQRRSKDVLSHNCQNGSLSDI 201

Query: 256 -----GLFSYPADIN--GTRYSM---HWISEA-----HRNSWHVLLDATALVVGEDRLNL 300
                 +F++P++ N  G ++S+     I E       +  W VL+DA      E   NL
Sbjct: 202 SGNNWNIFAFPSECNFSGQKFSLSLVKLIKEGKIPLQQQGKWMVLIDAAKGCATEPP-NL 260

Query: 301 ALHRPDFVLCNL 312
            ++  DFV+C+ 
Sbjct: 261 TVYPADFVVCSF 272

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
255540225	359	hypothetical protein RCOM_1506010 [Ricin	0.982	0.941	0.829	1e-169
225456335	361	PREDICTED: uncharacterized protein LOC10	0.991	0.944	0.826	1e-168
449454824	341	PREDICTED: uncharacterized protein LOC10	0.988	0.997	0.773	1e-149
297738459	339	unnamed protein product [Vitis vinifera]	0.915	0.929	0.727	1e-141
356513675	358	PREDICTED: uncharacterized protein LOC10	0.938	0.902	0.708	1e-136
224133980	275	predicted protein [Populus trichocarpa]	0.799	1.0	0.838	1e-135
359473610	341	PREDICTED: uncharacterized protein LOC10	0.904	0.912	0.708	1e-133
356508809	362	PREDICTED: uncharacterized protein LOC10	0.973	0.925	0.691	1e-132
224072584	327	predicted protein [Populus trichocarpa]	0.895	0.941	0.731	1e-131
224119680	275	predicted protein [Populus trichocarpa]	0.799	1.0	0.816	1e-130

>gi|255540225|ref|XP_002511177.1| hypothetical protein RCOM_1506010 [Ricinus communis] gi|223550292|gb|EEF51779.1| hypothetical protein RCOM_1506010 [Ricinus communis]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/340 (82%), Positives = 313/340 (92%), Gaps = 2/340 (0%)

Query: 1   MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITP 60
           ME ++K  L ASI K   ENGRPSSMV+KKAHT+IPAHI+AEAIST+ GLDLRWSGPITP
Sbjct: 19  MESQHKKSLFASITKPSVENGRPSSMVVKKAHTVIPAHIIAEAISTIRGLDLRWSGPITP 78

Query: 61  TEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTP 120
           TE QYVEQYVLAKYPQYAGLV GEK+DLS+LCINEE+SE  PDD+RKSPRN +R E S+P
Sbjct: 79  TERQYVEQYVLAKYPQYAGLVVGEKLDLSTLCINEEASEATPDDKRKSPRNTYR-EASSP 137

Query: 121 SFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLF 180
           S GS+LPDLDRTQLEPSRLLDILTKKSSFPGSF+SIPEIQA+N+VLKHCGLP DEYLVLF
Sbjct: 138 SLGSHLPDLDRTQLEPSRLLDILTKKSSFPGSFVSIPEIQAQNRVLKHCGLPADEYLVLF 197

Query: 181 TPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGS 240
           TPNY+DAMMLVGESYPFFRGNFYM+II E+LDY+REFA++KESKVILAPE WLDLRIKGS
Sbjct: 198 TPNYKDAMMLVGESYPFFRGNFYMSIIAEKLDYIREFATYKESKVILAPETWLDLRIKGS 257

Query: 241 QLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNL 300
           QLSQYFRRKCKH+PKGLFSYPAD+NGTRYSMHW+SEAHRNSWHVLLDATALVVG DR++L
Sbjct: 258 QLSQYFRRKCKHSPKGLFSYPADVNGTRYSMHWVSEAHRNSWHVLLDATALVVGTDRMSL 317

Query: 301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSA 340
           ALHRPDFVLC+ DN   A PS ITCLL+RKKSFDTST+S+
Sbjct: 318 ALHRPDFVLCSPDNIP-ANPSNITCLLVRKKSFDTSTASS 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456335|ref|XP_002280125.1| PREDICTED: uncharacterized protein LOC100249081 [Vitis vinifera] gi|297734426|emb|CBI15673.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/346 (82%), Positives = 314/346 (90%), Gaps = 5/346 (1%)

Query: 1   MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITP 60
           M+ E K     S+PKSP +N + SSMV+KKAHT+IPAHIVAEAISTLHGLDLRWSGPITP
Sbjct: 19  MDDELKESSFTSMPKSPLQNSKASSMVVKKAHTVIPAHIVAEAISTLHGLDLRWSGPITP 78

Query: 61  TEMQYVEQYVLAKYPQYA-GLVE-GEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPS 118
           TEMQYVEQYV AKYPQYA GLVE GE +DLS+LCINEESS+  PDDRRKSPR  FR   S
Sbjct: 79  TEMQYVEQYVFAKYPQYANGLVEEGEMIDLSTLCINEESSDPTPDDRRKSPRGSFRE--S 136

Query: 119 TPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLV 178
           TPSFGSNLPDLDRTQLE SRLLDILTKKSSFPGSFISIPEIQA+NKVLKHCGL D+EYLV
Sbjct: 137 TPSFGSNLPDLDRTQLEASRLLDILTKKSSFPGSFISIPEIQAQNKVLKHCGLSDNEYLV 196

Query: 179 LFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIK 238
           LFT NY++AMM+VGESYPFFRGNFYMTI+GEE DY++EFAS+K+SKVI APE WLDLRIK
Sbjct: 197 LFTSNYKEAMMMVGESYPFFRGNFYMTILGEEEDYIKEFASYKDSKVISAPETWLDLRIK 256

Query: 239 GSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRL 298
           GSQLSQYFRRKCKH+PKGLF YPAD+NGTRYSMHW+SEAHRNSWHVLLDATALVVGEDRL
Sbjct: 257 GSQLSQYFRRKCKHSPKGLFCYPADVNGTRYSMHWVSEAHRNSWHVLLDATALVVGEDRL 316

Query: 299 NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE 344
           NLALHRPDFVLC+LDNT +A PS+ITCLL+R+KSFDTST+SA  HE
Sbjct: 317 NLALHRPDFVLCSLDNT-HAHPSRITCLLVRRKSFDTSTASAQIHE 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454824|ref|XP_004145154.1| PREDICTED: uncharacterized protein LOC101203333 [Cucumis sativus] gi|449474261|ref|XP_004154121.1| PREDICTED: uncharacterized protein LOC101219770 [Cucumis sativus] gi|449503676|ref|XP_004162121.1| PREDICTED: uncharacterized protein LOC101224251 [Cucumis sativus]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/345 (77%), Positives = 299/345 (86%), Gaps = 5/345 (1%)

Query: 1   MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITP 60
           MEGE +   +AS  K P +  RPSSM +KKA T+IP HI+AEAISTL GLDLRWSGPITP
Sbjct: 1   MEGESQESNNASEAK-PADVFRPSSMGVKKALTMIPPHIIAEAISTLTGLDLRWSGPITP 59

Query: 61  TEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEE-SSETGPDDRRKSPRNGFRSEPST 119
            E QYVEQYVLAKYPQYAGL +GEK+DLS LCI+EE + +   DD RKSPRN  R E ST
Sbjct: 60  AERQYVEQYVLAKYPQYAGL-DGEKIDLSCLCIDEEPTDQIMADDWRKSPRNIPR-ESST 117

Query: 120 PSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVL 179
           PSFGSNLP+L+ TQLEPSRLLDIL KKSSFPGSFISIPEIQA+NKVLKHCGLPD+EYLVL
Sbjct: 118 PSFGSNLPNLEGTQLEPSRLLDILNKKSSFPGSFISIPEIQAQNKVLKHCGLPDEEYLVL 177

Query: 180 FTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKG 239
           FTP+YR AMMLVGE+YPFFRGN+YMT+I EE D ++EFASFKESKVI APE WLDLRIKG
Sbjct: 178 FTPSYRQAMMLVGEAYPFFRGNYYMTVIREEHDCIKEFASFKESKVIEAPETWLDLRIKG 237

Query: 240 SQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLN 299
           SQLSQYFRRKCKH+PKGLFSYPAD+NGTRYS+HW+SEAHRNSWHVLLDATA VVG +RLN
Sbjct: 238 SQLSQYFRRKCKHSPKGLFSYPADVNGTRYSLHWVSEAHRNSWHVLLDATAFVVGGERLN 297

Query: 300 LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE 344
             LHRPDFVLC+LDNT +A PS+I CLLIRKKSFDT+ +S+ A E
Sbjct: 298 PLLHRPDFVLCSLDNT-HANPSRIICLLIRKKSFDTTMASSQAAE 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738459|emb|CBI27660.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/330 (72%), Positives = 278/330 (84%), Gaps = 15/330 (4%)

Query: 8   DLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVE 67
           +L AS P+SP   GRPSSMVIKKA ++IPAH+VAEAISTLHGLDLRWSGPITP+EMQYVE
Sbjct: 22  ELEASHPESPIRIGRPSSMVIKKAKSVIPAHLVAEAISTLHGLDLRWSGPITPSEMQYVE 81

Query: 68  QYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLP 127
           +YVLAKYPQY              C   ESSE+  D++ KSP++    E S+PSF  NL 
Sbjct: 82  EYVLAKYPQY--------------CNGLESSESMADEKHKSPKSIGIRESSSPSFSINLS 127

Query: 128 DLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDA 187
           DLD+TQLEPSRLL+ILTKKSSF G+FISIPEIQARN+ L+HCGL + EY+VLFTPNY+DA
Sbjct: 128 DLDKTQLEPSRLLEILTKKSSFSGNFISIPEIQARNRALQHCGLSESEYMVLFTPNYKDA 187

Query: 188 MMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFR 247
           MM++GESYPFFRGNFYMTIIGEE DY+R+F   K+SKV+ APE WLDLRIKGSQLSQYFR
Sbjct: 188 MMMIGESYPFFRGNFYMTIIGEERDYIRQFVMAKDSKVVSAPETWLDLRIKGSQLSQYFR 247

Query: 248 RKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDF 307
           RKCK+ PKGLFSYPA++NGTRYSMHWISEAHRNSWHVLLDAT +V+G+DRL LALHRPDF
Sbjct: 248 RKCKNIPKGLFSYPANVNGTRYSMHWISEAHRNSWHVLLDATEMVIGKDRLTLALHRPDF 307

Query: 308 VLCNLDNTQNAQPSKITCLLIRKKSFDTST 337
           VLC LD+ ++ QPS ITCLL+R KSFDT+T
Sbjct: 308 VLCTLDD-KHTQPSMITCLLVRTKSFDTTT 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513675|ref|XP_003525536.1| PREDICTED: uncharacterized protein LOC100793062 [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/333 (70%), Positives = 281/333 (84%), Gaps = 10/333 (3%)

Query: 13  IPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLA 72
           I K   EN + +S+VIKK H +IP HI+AEAIST+  +D+RWSGPIT  EM+YVEQYVLA
Sbjct: 33  IHKLIAENTKSNSLVIKKPHVVIPPHIIAEAISTIRDIDIRWSGPITQKEMEYVEQYVLA 92

Query: 73  KYPQYAGLVEGEK--VDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLD 130
           KYP+YAGL+EG+   +D+SS  INEE SE   DDR+KSPR  FR     P FGSNLP++D
Sbjct: 93  KYPEYAGLIEGDGNGIDMSSFIINEEPSEPLSDDRKKSPRGTFRE----PLFGSNLPEMD 148

Query: 131 RTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMML 190
           +TQLEPSRLLDIL KKSSFPGSFISIPEIQA+NKVLKHCGLPDDEYLVLFTP+Y+DAMML
Sbjct: 149 KTQLEPSRLLDILNKKSSFPGSFISIPEIQAQNKVLKHCGLPDDEYLVLFTPSYKDAMML 208

Query: 191 VGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKC 250
           VGESYPF +GN+YMTI+GEE DY+REFASFKESKVILAP+ WLDLRI+GSQLSQ FRRKC
Sbjct: 209 VGESYPFVKGNYYMTILGEEKDYIREFASFKESKVILAPKTWLDLRIRGSQLSQNFRRKC 268

Query: 251 KHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC 310
           K + KGLF+Y AD+NGT    HW+SEAHRN WHVLLDA+ALV+G+DRL+L LHRPDF++C
Sbjct: 269 KVSLKGLFAYEADVNGTN---HWVSEAHRNYWHVLLDASALVLGKDRLHLGLHRPDFLVC 325

Query: 311 NLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAH 343
            L +T ++ PS+ITCLL+R KSF TST+S+  +
Sbjct: 326 CLHST-HSNPSRITCLLVRTKSFGTSTASSQVN 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133980|ref|XP_002321707.1| predicted protein [Populus trichocarpa] gi|222868703|gb|EEF05834.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/278 (83%), Positives = 255/278 (91%), Gaps = 3/278 (1%)

Query: 63  MQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSF 122
           MQYVEQYVLAKYPQYAG + GEKVDLS+LCINEE SE  PDD+ KSPR G R E STPSF
Sbjct: 1   MQYVEQYVLAKYPQYAGFI-GEKVDLSTLCINEEISEPSPDDKNKSPRTGLR-EVSTPSF 58

Query: 123 GSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTP 182
           GSN PDLDRTQLEPSRLLDILT+KSSFPGSF+SIPEIQA++KVL+HCGLPDDEYLVLFT 
Sbjct: 59  GSNHPDLDRTQLEPSRLLDILTEKSSFPGSFVSIPEIQAQHKVLRHCGLPDDEYLVLFTQ 118

Query: 183 NYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQL 242
           NY+DAMMLVGESYPFFRGNFYMT IGEE+DYV+EFAS+KESKVI  PE WL+LRIKGSQL
Sbjct: 119 NYKDAMMLVGESYPFFRGNFYMTAIGEEMDYVKEFASYKESKVIPTPENWLNLRIKGSQL 178

Query: 243 SQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLAL 302
           SQYFRRKCKH PKGLFSYPAD+NGTRYSMHW+SEAHRNSWHVLLDATALVVG+DRLNL+L
Sbjct: 179 SQYFRRKCKHCPKGLFSYPADVNGTRYSMHWVSEAHRNSWHVLLDATALVVGKDRLNLSL 238

Query: 303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSA 340
           HRPDFVLC+ DNT  A PS ITCLL+RKKSFDT+ +S+
Sbjct: 239 HRPDFVLCSPDNTP-ANPSTITCLLVRKKSFDTTIASS 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473610|ref|XP_002271377.2| PREDICTED: uncharacterized protein LOC100243822 [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/336 (70%), Positives = 274/336 (81%), Gaps = 25/336 (7%)

Query: 8   DLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVE 67
           +L AS P+SP   GRPSSMVIKKA ++IPAH+VAEAISTLHGLDLRWSGPITP+EMQYVE
Sbjct: 22  ELEASHPESPIRIGRPSSMVIKKAKSVIPAHLVAEAISTLHGLDLRWSGPITPSEMQYVE 81

Query: 68  QYVLAKYPQYA-GLVEGEKVDLSSLCINEESSETGPDDRRKSPRN-----GFRSEPSTPS 121
           +YVLAKYPQY  GLVE E                  DD++    N         + S+PS
Sbjct: 82  EYVLAKYPQYCNGLVEKE------------------DDKKIGLHNLSINEESSEKSSSPS 123

Query: 122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFT 181
           F  NL DLD+TQLEPSRLL+ILTKKSSF G+FISIPEIQARN+ L+HCGL + EY+VLFT
Sbjct: 124 FSINLSDLDKTQLEPSRLLEILTKKSSFSGNFISIPEIQARNRALQHCGLSESEYMVLFT 183

Query: 182 PNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQ 241
           PNY+DAMM++GESYPFFRGNFYMTIIGEE DY+R+F   K+SKV+ APE WLDLRIKGSQ
Sbjct: 184 PNYKDAMMMIGESYPFFRGNFYMTIIGEERDYIRQFVMAKDSKVVSAPETWLDLRIKGSQ 243

Query: 242 LSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLA 301
           LSQYFRRKCK+ PKGLFSYPA++NGTRYSMHWISEAHRNSWHVLLDAT +V+G+DRL LA
Sbjct: 244 LSQYFRRKCKNIPKGLFSYPANVNGTRYSMHWISEAHRNSWHVLLDATEMVIGKDRLTLA 303

Query: 302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTST 337
           LHRPDFVLC LD+ ++ QPS ITCLL+R KSFDT+T
Sbjct: 304 LHRPDFVLCTLDD-KHTQPSMITCLLVRTKSFDTTT 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508809|ref|XP_003523146.1| PREDICTED: uncharacterized protein LOC100782782 [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/350 (69%), Positives = 286/350 (81%), Gaps = 15/350 (4%)

Query: 1   MEGEYKPDLSASIPKSPTENGRPSSMVIKKAHTLIPAHIVAEAISTLHGLDLRWSGPITP 60
           +E E K     S  K  TE+ + +SMVIKK HTLIPAHI+AEAIST+  LD+RWSGPITP
Sbjct: 22  IENEVKDTQEGSTHKLITESCKSNSMVIKKRHTLIPAHIIAEAISTIADLDIRWSGPITP 81

Query: 61  TEMQYVEQYVLAKYPQYAGLVEGEK--VDLSSLCINEESSETGPDDRRKSPRNGFRSEPS 118
            EM+YVEQYVLAKYP+Y+GL++G+   ++LSS  I EE SE+  DDR KSPR     E S
Sbjct: 82  KEMEYVEQYVLAKYPEYSGLMKGDGNGINLSSFIIYEEPSESMIDDRGKSPR-----ESS 136

Query: 119 TPSFGSN-LPDLDRT--QLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDE 175
           T  FGSN LP++DR   QLEPSRLLDIL KKSSF GSFISIPEIQARNK+L H GLPD+E
Sbjct: 137 TYFFGSNNLPEMDRAKIQLEPSRLLDILNKKSSFLGSFISIPEIQARNKILNHYGLPDEE 196

Query: 176 YLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDL 235
           YLVLFTP+Y+DAMMLVGESYPF +GN+YMTI+ +E DY+REFASFKESKVI AP+ WLDL
Sbjct: 197 YLVLFTPSYKDAMMLVGESYPFVKGNYYMTILDQEEDYIREFASFKESKVISAPKTWLDL 256

Query: 236 RIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGE 295
           RI GSQLSQ FRR+CK + KGLFSYP D NGT   MHWISEAHRN+WHVLLDA+ALVVG+
Sbjct: 257 RISGSQLSQNFRRRCKISSKGLFSYPVDANGT---MHWISEAHRNNWHVLLDASALVVGK 313

Query: 296 DRLN-LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSAHAHE 344
           DRL+ LALHRPDFV+CNL+NT ++ PS++TCLL+RKKSF+ S +S+ A E
Sbjct: 314 DRLHLLALHRPDFVICNLENT-HSNPSRVTCLLVRKKSFEVSATSSQAVE 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072584|ref|XP_002303793.1| predicted protein [Populus trichocarpa] gi|222841225|gb|EEE78772.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 267/313 (85%), Gaps = 5/313 (1%)

Query: 29  KKAHTLIPAHIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYA-GLV-EGEKV 86
           KKAHT+IPAH++AEAIST+ GLDLRWSGPIT +EMQYV QYVLAKYPQY  G+V +G+  
Sbjct: 15  KKAHTIIPAHLIAEAISTIRGLDLRWSGPITLSEMQYVRQYVLAKYPQYCNGIVADGDST 74

Query: 87  -DLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTK 145
            +L++LCI+EESS++ PD +R  P++ F +  STP F  +L DLD+TQLE SRL+DIL K
Sbjct: 75  FNLTNLCIDEESSKSTPDSKRGLPQS-FGARESTPKFTRSLSDLDKTQLEASRLVDILNK 133

Query: 146 KSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT 205
           K+SF G+FISIPEIQ +N+ LKHCGL + +YLV+F PNYRDAM+++GESYPFFRGN+YMT
Sbjct: 134 KTSFQGNFISIPEIQVQNRALKHCGLSEADYLVIFMPNYRDAMVIIGESYPFFRGNYYMT 193

Query: 206 IIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN 265
           II EE D +REFA+ KESKVI  PE WLDLRIKGSQLSQYFRRKCKH PKGLFSYPA +N
Sbjct: 194 IIEEENDMIREFATSKESKVIPMPETWLDLRIKGSQLSQYFRRKCKHIPKGLFSYPAIVN 253

Query: 266 GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITC 325
            TRYSMHWISEAHRNSWHVLLDAT LV GE+RL LALHRPDFVLC LDNT +AQPSKITC
Sbjct: 254 ETRYSMHWISEAHRNSWHVLLDATGLVSGEERLALALHRPDFVLCTLDNT-HAQPSKITC 312

Query: 326 LLIRKKSFDTSTS 338
           LL+RK SFDTS S
Sbjct: 313 LLVRKLSFDTSAS 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119680|ref|XP_002318133.1| predicted protein [Populus trichocarpa] gi|222858806|gb|EEE96353.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/278 (81%), Positives = 251/278 (90%), Gaps = 3/278 (1%)

Query: 63  MQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSF 122
           MQYVEQYVLAKYPQYAG + GEKVDLS+LCINEE SE  PDD+ KSPR   R E S PS 
Sbjct: 1   MQYVEQYVLAKYPQYAGFI-GEKVDLSTLCINEEISEPSPDDKNKSPRASPR-EVSIPSL 58

Query: 123 GSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTP 182
           GSN PDLDRTQLEPSRLLDILT+KSSFPGSF+SIPEIQA++KVL+HCGL D+EYLVLFT 
Sbjct: 59  GSNHPDLDRTQLEPSRLLDILTEKSSFPGSFVSIPEIQAQHKVLRHCGLLDNEYLVLFTQ 118

Query: 183 NYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQL 242
           NY+DAMMLVGESYPFFRG FYMT IGEE+DYV+EFAS+KESKVI  PE WLDLRIKGSQL
Sbjct: 119 NYKDAMMLVGESYPFFRGKFYMTAIGEEMDYVKEFASYKESKVIPTPETWLDLRIKGSQL 178

Query: 243 SQYFRRKCKHTPKGLFSYPADINGTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLAL 302
           SQYFRRKCKH+PKGLFSYPAD++GTRYSMHW+SEAHRNSWHVLLDATALVVG+DRLNLAL
Sbjct: 179 SQYFRRKCKHSPKGLFSYPADVHGTRYSMHWVSEAHRNSWHVLLDATALVVGKDRLNLAL 238

Query: 303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSSA 340
           HRPDFVLC+ DNT    PS ITCLL+RK+SFDT+T+S+
Sbjct: 239 HRPDFVLCSPDNTP-TNPSTITCLLVRKRSFDTTTASS 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2115179	896	AT4G37100 [Arabidopsis thalian	0.729	0.280	0.289	1.2e-20
TAIR|locus:2046837	895	AT2G23520 [Arabidopsis thalian	0.610	0.234	0.296	1.5e-20
TAIR|locus:2166523	570	AT5G51920 [Arabidopsis thalian	0.645	0.389	0.274	2.6e-18
TAIR|locus:2158088	870	AT5G66950 [Arabidopsis thalian	0.485	0.191	0.323	5.9e-18
TAIR|locus:2127253	559	AT4G22980 "AT4G22980" [Arabido	0.511	0.314	0.304	5.1e-15
UNIPROTKB|F1SAI5	889	LOC100621611 "Uncharacterized	0.412	0.159	0.315	9.7e-07
UNIPROTKB|F1N3A9	849	MOCOS "Molybdenum cofactor sul	0.415	0.168	0.323	1.5e-06
UNIPROTKB|G3N1I0	882	MOCOS "Molybdenum cofactor sul	0.415	0.162	0.323	1.6e-06
UNIPROTKB|Q9N0E7	882	MOCOS "Molybdenum cofactor sul	0.415	0.162	0.323	1.6e-06
UNIPROTKB|A8X493	707	CBG07703 "Molybdenum cofactor	0.584	0.284	0.293	2.6e-06

TAIR|locus:2115179 AT4G37100 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 78/269 (28%), Positives = 125/269 (46%)

Query:    71 LAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLD 130
             L+ YP+Y      EK+D   L  +E S  +    +      GF       S+   L   D
Sbjct:   123 LSMYPKYQA---SEKID--QLRSDEYSHLSSSASKVCLDYCGF----GLFSYVQTLHYWD 173

Query:   131 RTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMML 190
                   S +   L+  + + G+     E   + +++ +  +P++EY ++FT +   A  L
Sbjct:   174 TCTFSLSEITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFRL 233

Query:   191 VGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD---LRIKGSQLSQ--- 244
             + ESYPF      +T+   E   V   A     K   A  AW     L++  + L +   
Sbjct:   234 LAESYPFQSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLS 293

Query:   245 YFRRKCKHTPKGLFSYPAD--INGTRYSMHWISEAHRNSWHVLLDATALVVGE-DRLNLA 301
             Y +RK K +  GLF +PA   + GT+YS  W++ A +N WHVLLDA +L   + D L L+
Sbjct:   294 YKKRKKKDSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLS 353

Query:   302 LHRPDFVLCNLDNTQNAQPSKITCLLIRK 330
             L RP+F++ +        P+   CLLI+K
Sbjct:   354 LFRPEFIITSFYRVFGHDPTGFGCLLIKK 382

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2046837 AT2G23520 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 65/219 (29%), Positives = 108/219 (49%)

Query:   121 SFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLF 180
             S+   L   D      S +   L+  + + G+ I   E   + +++ +  +P+ EY ++F
Sbjct:   160 SYVQTLHYWDSCTFSLSEITANLSNHALYGGAEIGTVEHDLKTRIMDYLNIPESEYGLVF 219

Query:   181 TPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD---LRI 237
             T +   A  L+ ESYPF      +T+   E   V   A     K   A  AW     L++
Sbjct:   220 TGSRGSAFRLLAESYPFHTNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKL 279

Query:   238 KGSQLSQ---YFRRKCKHTPKGLFSYPAD--INGTRYSMHWISEAHRNSWHVLLDATALV 292
               + L +   + +RK K +  GLF +PA   + G++YS  W++ A +N+WHVLLDA +L 
Sbjct:   280 CSTDLKKRLSHKKRKKKDSAVGLFVFPAQSRVTGSKYSYQWMALAQQNNWHVLLDAGSLG 339

Query:   293 VGE-DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK 330
               + D L L+L RP+F++ +        P+   CLLI+K
Sbjct:   340 PKDMDSLGLSLFRPEFIITSFYKVFGHDPTGFGCLLIKK 378

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2166523 AT5G51920 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 64/233 (27%), Positives = 110/233 (47%)

Query:   116 EPSTPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDE 175
             +PST    S+L +     + P   +  L +K    G   +  E   + +++    + +++
Sbjct:   128 DPSTYQISSSLSESPFFSVSPK--IGNLKEKLLNDGGQETEFEYSMKRRIMGFLKISEED 185

Query:   176 YLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKE---SKVILAPEAW 232
             Y ++FT N   A  LV ESYPF      +T+   E + V E     E   +KV  A  +W
Sbjct:   186 YSMVFTANRTSAFRLVAESYPFNSKRKLLTVYDYESEAVSEINRVSEKRGAKVAAAEFSW 245

Query:   233 LDLRIKGSQLSQYF---RRKCKHTPKGLFSYP--ADINGTRYSMHWISEAHRNSWHVLLD 287
               L++  S+L +     +   K   KG++ +P  + + G+RY   W+S A  N WHV++D
Sbjct:   246 PRLKLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGSRYPYLWMSVAQENGWHVMID 305

Query:   288 ATALVVGE-DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTSTSS 339
             A  L   + D   L+++ PDF++C+        PS   CL ++K +     SS
Sbjct:   306 ACGLGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSGFGCLFVKKSTISILESS 358

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2158088 AT5G66950 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.9e-18, P = 5.9e-18
 Identities = 57/176 (32%), Positives = 96/176 (54%)

Query:   164 KVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE---LDYVREFASF 220
             +++ +  +P++EY ++FT +   A  L+ ESYPF      +T+   E   + ++ + A  
Sbjct:   201 RIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDHESQSVSWMGQCAKE 260

Query:   221 KESKVILAPEAWLDLRIKGSQLSQYF---RRKCKHTPKGLFSYPAD--INGTRYSMHWIS 275
             K +KV  A   W  LR+    L +     +++ K +  GLF +P    + G++YS  W++
Sbjct:   261 KGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRKKDSATGLFVFPVQSRVTGSKYSYQWMA 320

Query:   276 EAHRNSWHVLLDATALVVGE-DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK 330
              A +N+WHVLLDA AL   + D L L+L RPDF++ +        P+   CLLI+K
Sbjct:   321 LAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFIITSFYRVFGYDPTGFGCLLIKK 376

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2127253 AT4G22980 "AT4G22980" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 56/184 (30%), Positives = 84/184 (45%)

Query:   162 RNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFK 221
             R ++     L + EY ++ T +   A  +V E Y F      +T+   E + V E     
Sbjct:   153 RKRITSFMNLEESEYHMILTQDRSSAFKIVAELYSFKTNPNLLTVYNYEDEAVEEMIRIS 212

Query:   222 ESKVILAPEA---WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPAD--INGTRYSMHWISE 276
             E K I    A   W    I   +L +   R  +   +GLF +P    + G  YS  W+S 
Sbjct:   213 EKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRGKRGLFVFPLQSLVTGASYSYSWMSL 272

Query:   277 AHRNSWHVLLDATALVVGE-DRLNLALHRPDFVLCNLDNTQNAQ-PSKITCLLIRKKSFD 334
             A  + WHVLLD +AL   + + L L+L +PDF++C+         PS   CL + KKS  
Sbjct:   273 ARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSFTEVLGQDDPSGFGCLFV-KKSSS 331

Query:   335 TSTS 338
             T+ S
Sbjct:   332 TALS 335

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 145 (56.1 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 54/171 (31%), Positives = 77/171 (45%)

Query:   160 QARNKVLKH-CGLPDDEYLVLFTPNYRDAMMLVGESYPFFR-------GNF-YMTIIGEE 210
             Q R ++L H C  P+D Y V+FT     A+ LV E++P+           F Y+T     
Sbjct:    96 QVRYRILAHFCTSPED-YTVIFTAGSTAALKLVAEAFPWVSPGPESSGSRFCYLTDSHTS 154

Query:   211 LDYVREFASFKESKVI-LAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--G 266
             +  +R+  +      I + PE  WL  +   +           H P  LF YPA  N  G
Sbjct:   155 VVGMRKVTTAMNVTCIPVRPEDMWLAEKQDAAAAGDP-----DHQPPHLFCYPAQSNFSG 209

Query:   267 TRYSMHWISEAHRNS---------WHVLLDATALVVGEDRLNLALHRPDFV 308
             +RY + WI E              W+VLLDA A V G   L+L++H+ DFV
Sbjct:   210 SRYPLSWIGEVKSGQMRPVSAPGKWYVLLDAAAYV-GTSPLDLSVHQADFV 259

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IEA

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 55/170 (32%), Positives = 79/170 (46%)

Query:   160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF----RGN---F-YMTIIGEEL 211
             Q R ++L H     ++Y V+FT     A+ LV E++P+      G+   F Y+T     +
Sbjct:    63 QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 122

Query:   212 DYVREF-ASFKESKVILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GT 267
               +R+  A+   S + + PE  W   R   +       +     P  LF YPA  N  GT
Sbjct:   123 VGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQ-----PPHLFCYPAQSNFSGT 177

Query:   268 RYSMHWISE--------AHR-NSWHVLLDATALVVGEDRLNLALHRPDFV 308
             RY + WI E        A R   W VLLDA A V G   L+L++H+ DFV
Sbjct:   178 RYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFV-GTSPLDLSVHQADFV 226

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 55/170 (32%), Positives = 79/170 (46%)

Query:   160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF----RGN---F-YMTIIGEEL 211
             Q R ++L H     ++Y V+FT     A+ LV E++P+      G+   F Y+T     +
Sbjct:    96 QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 155

Query:   212 DYVREF-ASFKESKVILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GT 267
               +R+  A+   S + + PE  W   R   +       +     P  LF YPA  N  GT
Sbjct:   156 VGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQ-----PPHLFCYPAQSNFSGT 210

Query:   268 RYSMHWISE--------AHR-NSWHVLLDATALVVGEDRLNLALHRPDFV 308
             RY + WI E        A R   W VLLDA A V G   L+L++H+ DFV
Sbjct:   211 RYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFV-GTSPLDLSVHQADFV 259

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IEA

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 55/170 (32%), Positives = 79/170 (46%)

Query:   160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF----RGN---F-YMTIIGEEL 211
             Q R ++L H     ++Y V+FT     A+ LV E++P+      G+   F Y+T     +
Sbjct:    96 QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 155

Query:   212 DYVREF-ASFKESKVILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GT 267
               +R+  A+   S + + PE  W   R   +       +     P  LF YPA  N  GT
Sbjct:   156 VGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQ-----PPHLFCYPAQSNFSGT 210

Query:   268 RYSMHWISE--------AHR-NSWHVLLDATALVVGEDRLNLALHRPDFV 308
             RY + WI E        A R   W VLLDA A V G   L+L++H+ DFV
Sbjct:   211 RYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFV-GTSPLDLSVHQADFV 259

GO:0005575 "cellular_component" evidence=ND

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IMP

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

UNIPROTKB|A8X493 CBG07703 "Molybdenum cofactor sulfurase" [Caenorhabditis briggsae (taxid:6238)]

 Score = 140 (54.3 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 66/225 (29%), Positives = 104/225 (46%)

Query:   123 GSNLPDLDRTQLEPSRLLD---ILTKKSSFPGSFISIPEI--QARNKVLKHCGLPDDEYL 177
             GS LP   +TQLE    L    IL    S   + I   +I   AR+++L++     D+Y 
Sbjct:     8 GSTLPS--KTQLEELAKLQTQLILANPHSHHSTAIKTQQIVSSARHRILRYFNTTADDYF 65

Query:   178 VLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVRE-----FASFKES--KVILAPE 230
             V+FT N   A+ +V E++ F  G+     +  E+  V +     FA F +S   V+    
Sbjct:    66 VVFTNNTTHALKIVAENFNF--GHRTQEGVVSEISAVLKGGPSNFAYFNDSHHSVVGLRH 123

Query:   231 AWLDLRIKGSQLSQ-YFRRKC-KHTPKGLFSYPADINGTRYSMHW-ISEAHRNSWHVLLD 287
               L      S +++   + +C       LF + A  N   + + + I+E   + W V +D
Sbjct:   124 VVLGKVDAISCVNEDVVKEECIPKVENSLFVFTAMSN---FLIPFQINEKLISGWSVCVD 180

Query:   288 ATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS 332
             A ALV G  RL+L  HRP+FV  +        P+ I  LL++K S
Sbjct:   181 AAALVSGT-RLDLTAHRPNFVAFSFYKIFG-YPTGIGALLVKKDS 223

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=ISS

GO:0043545 "molybdopterin cofactor metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017947001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (329 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	3e-05

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 37/160 (23%)

Query: 161 ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-------TIIGEELDY 213
           AR +VL++   P  +Y  +FT     A+ LVGE++P+   + +        +++G     
Sbjct: 83  ARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLG----- 137

Query: 214 VREFASFKESKVILAPEAWLDLRIKGSQLSQYF------RRKC----KHTPKG----LFS 259
           +RE+A  K +  I         +   SQ S         RR      K    G    LF+
Sbjct: 138 IREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFA 197

Query: 260 YPADIN--GTRYSMHWI---------SEAHRNSWHVLLDA 288
           +P++ N  G ++ +  +         + +    W VLLDA
Sbjct: 198 FPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237

Length = 805

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
PLN02724	805	Molybdenum cofactor sulfurase	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.97
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.96
PLN02651	364	cysteine desulfurase	99.96
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.96
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.95
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.94
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.94
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.93
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.93
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.93
PRK02948	381	cysteine desulfurase; Provisional	99.92
PRK14012	404	cysteine desulfurase; Provisional	99.92
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.92
PRK03080	378	phosphoserine aminotransferase; Provisional	99.92
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.92
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.91
PRK02769	380	histidine decarboxylase; Provisional	99.91
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.91
PLN02409	401	serine--glyoxylate aminotransaminase	99.91
PLN03032	374	serine decarboxylase; Provisional	99.89
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.89
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.89
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.88
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.87
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.85
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.85
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.84
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.83
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.82
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.8
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.8
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.78
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.77
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.77
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.76
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.75
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.73
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.73
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.72
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.7
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.69
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.65
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.65
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.65
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.64
PRK04311	464	selenocysteine synthase; Provisional	99.63
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.63
PRK08114	395	cystathionine beta-lyase; Provisional	99.63
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.62
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.61
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.6
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.59
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.59
PRK08064	390	cystathionine beta-lyase; Provisional	99.58
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.58
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.55
PLN02271	586	serine hydroxymethyltransferase	99.55
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.55
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.54
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.53
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.53
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.53
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.53
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.53
PRK05367	954	glycine dehydrogenase; Provisional	99.53
PLN02880	490	tyrosine decarboxylase	99.52
PRK08861	388	cystathionine gamma-synthase; Provisional	99.51
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.51
PRK07179	407	hypothetical protein; Provisional	99.51
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.5
PRK05367	954	glycine dehydrogenase; Provisional	99.5
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.49
PRK07503	403	methionine gamma-lyase; Provisional	99.49
PRK09028	394	cystathionine beta-lyase; Provisional	99.48
PRK05939	397	hypothetical protein; Provisional	99.48
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.47
PLN02263	470	serine decarboxylase	99.47
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.47
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.46
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.45
PRK07811	388	cystathionine gamma-synthase; Provisional	99.45
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.45
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.45
PLN02452	365	phosphoserine transaminase	99.45
PRK08776	405	cystathionine gamma-synthase; Provisional	99.44
PRK08045	386	cystathionine gamma-synthase; Provisional	99.44
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.43
PRK08574	385	cystathionine gamma-synthase; Provisional	99.43
PRK08249	398	cystathionine gamma-synthase; Provisional	99.43
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.43
PLN02721	353	threonine aldolase	99.42
PRK06225	380	aspartate aminotransferase; Provisional	99.42
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.42
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.41
PRK12566	954	glycine dehydrogenase; Provisional	99.41
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.41
PRK06767	386	methionine gamma-lyase; Provisional	99.41
PRK07050	394	cystathionine beta-lyase; Provisional	99.41
PRK06460	376	hypothetical protein; Provisional	99.41
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.4
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.4
PRK05968	389	hypothetical protein; Provisional	99.4
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.39
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.38
PRK07582	366	cystathionine gamma-lyase; Validated	99.37
PLN02509	464	cystathionine beta-lyase	99.37
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.36
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.36
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.36
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.36
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.36
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.35
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.35
PRK06234	400	methionine gamma-lyase; Provisional	99.35
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.33
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.32
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.32
PRK07908	349	hypothetical protein; Provisional	99.32
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.31
PRK08960	387	hypothetical protein; Provisional	99.31
PRK06836	394	aspartate aminotransferase; Provisional	99.3
PRK07671	377	cystathionine beta-lyase; Provisional	99.29
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.29
PRK08361	391	aspartate aminotransferase; Provisional	99.29
PRK06108	382	aspartate aminotransferase; Provisional	99.29
PLN02483	489	serine palmitoyltransferase	99.28
PRK09105	370	putative aminotransferase; Provisional	99.28
PRK05957	389	aspartate aminotransferase; Provisional	99.28
PLN02590	539	probable tyrosine decarboxylase	99.27
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.26
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.25
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.24
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.24
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.23
PLN02242	418	methionine gamma-lyase	99.23
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.23
PRK05764	393	aspartate aminotransferase; Provisional	99.23
PRK12462	364	phosphoserine aminotransferase; Provisional	99.21
PRK07337	388	aminotransferase; Validated	99.21
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.21
PRK07324	373	transaminase; Validated	99.2
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.2
PRK06434	384	cystathionine gamma-lyase; Validated	99.2
PRK08912	387	hypothetical protein; Provisional	99.2
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.2
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.2
PRK03321	352	putative aminotransferase; Provisional	99.19
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.19
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.18
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.17
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.17
PRK09265	404	aminotransferase AlaT; Validated	99.15
PRK07681	399	aspartate aminotransferase; Provisional	99.15
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.15
PRK05967	395	cystathionine beta-lyase; Provisional	99.14
PRK12414	384	putative aminotransferase; Provisional	99.14
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.14
PRK05942	394	aspartate aminotransferase; Provisional	99.13
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.12
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.11
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.11
PRK09082	386	methionine aminotransferase; Validated	99.1
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	99.09
PRK07568	397	aspartate aminotransferase; Provisional	99.09
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.09
PRK13392	410	5-aminolevulinate synthase; Provisional	99.09
PRK08363	398	alanine aminotransferase; Validated	99.08
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.07
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.07
PRK07683	387	aminotransferase A; Validated	99.06
PRK07550	386	hypothetical protein; Provisional	99.04
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.04
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.04
PRK07777	387	aminotransferase; Validated	99.04
PRK07682	378	hypothetical protein; Validated	99.04
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.03
PRK13393	406	5-aminolevulinate synthase; Provisional	99.03
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.03
PRK09064	407	5-aminolevulinate synthase; Validated	99.02
PLN00175	413	aminotransferase family protein; Provisional	99.02
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.02
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.01
PRK13237	460	tyrosine phenol-lyase; Provisional	99.0
PRK06207	405	aspartate aminotransferase; Provisional	98.98
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	98.97
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.95
PLN02656	409	tyrosine transaminase	98.93
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.93
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	98.92
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	98.92
PLN02822	481	serine palmitoyltransferase	98.92
PTZ00433	412	tyrosine aminotransferase; Provisional	98.91
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.89
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.89
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.89
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	98.86
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	98.85
PRK06290	410	aspartate aminotransferase; Provisional	98.85
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	98.84
PLN02187	462	rooty/superroot1	98.84
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	98.84
PRK06107	402	aspartate aminotransferase; Provisional	98.83
PRK06348	384	aspartate aminotransferase; Provisional	98.82
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	98.82
PRK01533	366	histidinol-phosphate aminotransferase; Validated	98.81
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	98.8
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	98.79
PRK09148	405	aminotransferase; Validated	98.79
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	98.77
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.76
PRK10534	333	L-threonine aldolase; Provisional	98.76
PRK08175	395	aminotransferase; Validated	98.76
PRK06358	354	threonine-phosphate decarboxylase; Provisional	98.75
PRK07049	427	methionine gamma-lyase; Validated	98.73
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	98.72
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	98.72
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.71
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.71
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	98.68
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.68
PRK08068	389	transaminase; Reviewed	98.68
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.66
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	98.64
PRK07366	388	succinyldiaminopimelate transaminase; Validated	98.61
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.6
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	98.57
PTZ00377	481	alanine aminotransferase; Provisional	98.56
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	98.53
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	98.52
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	98.48
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.48
PRK07392	360	threonine-phosphate decarboxylase; Validated	98.47
PRK08636	403	aspartate aminotransferase; Provisional	98.45
PTZ00125	400	ornithine aminotransferase-like protein; Provision	98.45
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	98.44
PRK15029	755	arginine decarboxylase; Provisional	98.44
PRK06425	332	histidinol-phosphate aminotransferase; Validated	98.43
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.42
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	98.41
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.39
PRK06855	433	aminotransferase; Validated	98.39
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	98.35
PRK03244	398	argD acetylornithine aminotransferase; Provisional	98.35
PRK07505	402	hypothetical protein; Provisional	98.33
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.31
KOG1368	384	consensus Threonine aldolase [Amino acid transport	98.31
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	98.3
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	98.29
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	98.24
PRK09257	396	aromatic amino acid aminotransferase; Provisional	98.23
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.22
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.21
PRK08354	311	putative aminotransferase; Provisional	98.21
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.19
PLN02368	407	alanine transaminase	98.19
PRK05839	374	hypothetical protein; Provisional	98.18
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	98.17
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	98.17
PRK08637	388	hypothetical protein; Provisional	98.15
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	98.13
PRK13578	720	ornithine decarboxylase; Provisional	98.12
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	98.11
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	98.09
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.08
PLN02231	534	alanine transaminase	98.05
PLN02955	476	8-amino-7-oxononanoate synthase	97.98
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.96
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	97.96
PRK01278	389	argD acetylornithine transaminase protein; Provisi	97.95
PRK02627	396	acetylornithine aminotransferase; Provisional	97.93
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.91
PRK15400	714	lysine decarboxylase CadA; Provisional	97.88
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	97.77
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	97.77
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.74
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	97.7
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	97.68
PRK03715	395	argD acetylornithine transaminase protein; Provisi	97.67
PTZ00376	404	aspartate aminotransferase; Provisional	97.6
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.58
PLN02624	474	ornithine-delta-aminotransferase	97.55
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	97.5
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	97.48
PRK09275	527	aspartate aminotransferase; Provisional	97.46
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	97.44
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	97.38
PLN02672	1082	methionine S-methyltransferase	97.33
KOG0629	510	consensus Glutamate decarboxylase and related prot	97.29
PRK04260	375	acetylornithine aminotransferase; Provisional	97.27
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	97.25
PRK02936	377	argD acetylornithine aminotransferase; Provisional	97.24
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	97.12
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	97.09
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	97.02
COG4100	416	Cystathionine beta-lyase family protein involved i	97.0
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	96.95
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	96.94
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	96.76
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	96.69
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	96.68
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	96.6
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	96.59
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	96.54
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	96.5
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	96.32
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	96.26
PLN02397	423	aspartate transaminase	96.25
PRK06062	451	hypothetical protein; Provisional	96.24
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	96.19
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	96.18
PRK06105	460	aminotransferase; Provisional	96.01
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	95.89
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	95.78
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	95.74
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	95.73
PLN02760	504	4-aminobutyrate:pyruvate transaminase	95.7
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	95.68
PRK12566	954	glycine dehydrogenase; Provisional	95.65
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	95.62
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	95.53
PRK12403	460	putative aminotransferase; Provisional	95.31
PRK06541	460	hypothetical protein; Provisional	95.1
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	95.07
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	95.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	94.99
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	94.82
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	94.71
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	94.53
PRK07678	451	aminotransferase; Validated	94.52
PRK09792	421	4-aminobutyrate transaminase; Provisional	94.45
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	94.42
PRK07480	456	putative aminotransferase; Validated	94.25
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	94.19
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	94.19
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	94.18
KOG0634	472	consensus Aromatic amino acid aminotransferase and	94.04
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	93.78
PRK07481	449	hypothetical protein; Provisional	93.64
PLN00144	382	acetylornithine transaminase	93.53
PRK07046	453	aminotransferase; Validated	93.52
PRK07036	466	hypothetical protein; Provisional	93.35
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	93.23
PRK07482	461	hypothetical protein; Provisional	93.16
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	92.89
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	92.74
PRK07483	443	hypothetical protein; Provisional	92.6
PRK05965	459	hypothetical protein; Provisional	92.31
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	91.98
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	91.63
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	91.63
PRK08088	425	4-aminobutyrate aminotransferase; Validated	91.44
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	91.44
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	91.37
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	91.13
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	90.96
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	90.93
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	90.51
PRK06917	447	hypothetical protein; Provisional	89.87
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	89.52
PRK06149	972	hypothetical protein; Provisional	89.2
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	89.08
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	88.78
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	88.58
PRK04612	408	argD acetylornithine transaminase protein; Provisi	88.52
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	87.42
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	87.36
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	85.54
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	85.41
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	85.18
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	84.94
PRK06148	1013	hypothetical protein; Provisional	84.81
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	83.47
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	80.98
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	80.75
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	80.1

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-38  Score=317.92  Aligned_cols=196  Identities=18%  Similarity=0.143  Sum_probs=168.2

Q ss_pred             cccchHHHHHHhhccC----CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--CCCCCeE-
Q 035915          131 RTQLEPSRLLDILTKK----SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--FFRGNFY-  203 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gn----ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~~~Gd~i-  203 (344)
                      +|-..........+.|    .+..+..++..++++|+.||+|+|+++. .+|+||+|+|+|+|+++.++.  +.+||+| 
T Consensus        37 ~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~-~eIvft~~tT~aln~va~~l~~~~~~gdeIv  115 (405)
T COG0520          37 AVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS-DEIVFTRGTTEALNLVARGLGRSLKPGDEIV  115 (405)
T ss_pred             HHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC-CeEEEeCChhHHHHHHHHHhhhhhcCCCEEE
Confidence            4444444443334455    2345666777899999999999999862 289999999999999999997  7889985 


Q ss_pred             EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          204 MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       204 vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                      +|.+|||+|  .|++++++.|++|+++|.+ .++.++.+++++.+++     +|+||+++++||  |+++|+++|.+ +|
T Consensus       116 ~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~-----~Tklvais~vSn~tG~~~pv~~I~~la~  189 (405)
T COG0520         116 VSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITP-----KTKLVALSHVSNVTGTVNPVKEIAELAH  189 (405)
T ss_pred             EccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCC-----CceEEEEECccccccccchHHHHHHHHH
Confidence            689999955  7899999899999999998 5789999999998775     589999999998  99999988865 79


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|++|+|||+|++ ||.++|++++++||++||+||| ++||+|+|+||+|+++++.
T Consensus       190 ~~ga~v~VDaaq~~-~h~~idv~~l~~Df~afsgHKw-l~gP~GiGvLy~r~~~l~~  244 (405)
T COG0520         190 EHGALVLVDAAQAA-GHLPIDVQELGCDFLAFSGHKW-LLGPTGIGVLYVRKELLEE  244 (405)
T ss_pred             HcCCEEEEECcccc-CccCCCchhcCCCEEEEccccc-ccCCCceEEEEEchHHHhh
Confidence            99999999999999 9999999999999999999999 5559999999999998876

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-38  Score=309.48  Aligned_cols=190  Identities=19%  Similarity=0.149  Sum_probs=163.2

Q ss_pred             ccchHHHHHHhhccCCC---ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh--CCCC---CCCe-
Q 035915          132 TQLEPSRLLDILTKKSS---FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES--YPFF---RGNF-  202 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss---~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s--l~~~---~Gd~-  202 (344)
                      |.+.........+||++   ..|++++..+++||++||+++|++|+  +|+||||+||+.|+++.+  +.+.   .|.+ 
T Consensus        17 v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~--eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HI   94 (386)
T COG1104          17 VLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE--EIIFTSGATESNNLAIKGAALAYRNAQKGKHI   94 (386)
T ss_pred             HHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC--eEEEecCCcHHHHHHHHhhHHhhhcccCCCeE
Confidence            43433333344588843   46999999999999999999999985  799999999999999887  4332   4556 


Q ss_pred             EEEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-H
Q 035915          203 YMTIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-A  277 (344)
Q Consensus       203 ivS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-a  277 (344)
                      |+|.+||+  .+.++++ ++.|++|.++|++. +|.++.++|++++++     +|.||+++++||  |++|||++|++ +
T Consensus        95 Its~iEH~aVl~~~~~L-e~~g~~Vtyl~V~~-~G~v~~e~L~~al~~-----~T~LVSim~aNnE~G~IQpI~ei~~i~  167 (386)
T COG1104          95 ITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDS-NGLVDLEQLEEALRP-----DTILVSIMHANNETGTIQPIAEIGEIC  167 (386)
T ss_pred             EEcccccHHHHHHHHHH-HhcCCeEEEeCCCC-CCeEcHHHHHHhcCC-----CceEEEEEecccCeeecccHHHHHHHH
Confidence            67899999  6788888 67899999999998 699999999999986     489999999998  99999999976 6


Q ss_pred             HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          278 HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +++|++||+||+|++ |++|||+..+++|+++||+||+ + ||+|+|+||+|+...
T Consensus       168 k~~~i~fHvDAvQa~-Gkipi~~~~~~vD~ls~SaHK~-~-GpkGiGaLyv~~~~~  220 (386)
T COG1104         168 KERGILFHVDAVQAV-GKIPIDLEELGVDLLSFSAHKF-G-GPKGIGALYVRPGVR  220 (386)
T ss_pred             HHcCCeEEEehhhhc-CceeccccccCcceEEeehhhc-c-CCCceEEEEECCCCc
Confidence            999999999999999 9999999999999999999996 5 599999999987543

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=302.75  Aligned_cols=197  Identities=19%  Similarity=0.112  Sum_probs=169.2

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCC--hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSF--PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR  199 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~--~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~  199 (344)
                      .|++-|....|-..+..+....++|+++  .++++...+|+||+.||+++||++.  +|+||+|||||+|+++++++|..
T Consensus        49 ~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~--dIiFts~ATEs~Nlvl~~v~~~~  126 (428)
T KOG1549|consen   49 NQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPS--DIVFTSGATESNNLVLKGVARFF  126 (428)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCC--cEEEeCCchHHHHHHHHHhhccc
Confidence            3444344445766777777777888543  6888888899999999999999987  59999999999999999999977


Q ss_pred             CC----eE-EEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc
Q 035915          200 GN----FY-MTIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS  270 (344)
Q Consensus       200 Gd----~i-vS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P  270 (344)
                      ++    +| ++..||+  ..+|+.+. +.|++|+++|++ .++.++.+.+++.+++     +|+||++++++|  |+++|
T Consensus       127 ~~~~~k~iitl~~eH~~v~~s~~~l~-~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~-----~T~lv~I~~Vnn~~gv~~P  199 (428)
T KOG1549|consen  127 GDKTKKHIITLQTEHPCVLDSCRALQ-EEGLEVTYLPVE-DSGLVDISKLREAIRS-----KTRLVSIMHVNNEIGVLQP  199 (428)
T ss_pred             cccccceEEEecccCcchhHHHHHHH-hcCeEEEEeccC-ccccccHHHHHHhcCC-----CceEEEEEecccCcccccc
Confidence            76    65 4667776  55677764 468999999998 5688999999999987     589999999998  99999


Q ss_pred             HHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          271 MHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       271 l~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      +++|. .|+..|++||+||||++ |++++|++++++||+++|+||| || |+|+|+||||+
T Consensus       200 v~EI~~icr~~~v~v~~DaAQav-G~i~vDV~eln~D~~s~s~HK~-yg-p~~iGaLYvr~  257 (428)
T KOG1549|consen  200 VKEIVKICREEGVQVHVDAAQAV-GKIPVDVQELNADFLSISAHKI-YG-PPGIGALYVRR  257 (428)
T ss_pred             HHHHHHHhCcCCcEEEeehhhhc-CCccccHHHcCchheeeecccc-cC-CCcceEEEEcc
Confidence            98887 57999999999999999 9999999999999999999999 88 88999999997

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=1e-35  Score=319.68  Aligned_cols=231  Identities=21%  Similarity=0.314  Sum_probs=183.5

Q ss_pred             HHHHHHHhcCcccCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccccchHHHHHHhhcc
Q 035915           66 VEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEPSTPSFGSNLPDLDRTQLEPSRLLDILTK  145 (344)
Q Consensus        66 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~lp~~s~v~~~~~~L~~~L~g  145 (344)
                      ++.++..+||-+.+.+|                   +|+                 .|+++|..++|.++.+.+...+++
T Consensus        21 ~~~~R~~~fp~l~~~iY-------------------LD~-----------------Aatt~~~~~~V~~~~~~~~~~~~~   64 (805)
T PLN02724         21 IDELRATEFARLKGVVY-------------------LDH-----------------AGATLYSESQLEAALADFSSNVYG   64 (805)
T ss_pred             HHHHHHHHhhhcCCCEe-------------------EeC-----------------CCCCCCCHHHHHHHHHHHHhhccC
Confidence            88888788999888788                   777                 456655556788877777666777


Q ss_pred             CCC---ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-HHHHHHHHHc
Q 035915          146 KSS---FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-LDYVREFASF  220 (344)
Q Consensus       146 nss---~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-~~~ir~la~~  220 (344)
                      |++   ..+..+...+++||++||+|||+++++|+||||+|+|+|+|+++++++|++|++|+ +..+|+ ...|++++++
T Consensus        65 np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~  144 (805)
T PLN02724         65 NPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALE  144 (805)
T ss_pred             CCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHH
Confidence            743   24556677899999999999999887778999999999999999999999999865 556666 3366778888


Q ss_pred             CCcEEEEEeCCC-------CCCccCH--HHHHHHhh----h-cCCCCCeeEEEEeCccc--cccccHHHHHHHHhC----
Q 035915          221 KESKVILAPEAW-------LDLRIKG--SQLSQYFR----R-KCKHTPKGLFSYPADIN--GTRYSMHWISEAHRN----  280 (344)
Q Consensus       221 ~G~kV~~vp~~~-------~~g~i~~--~~L~~~l~----~-~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~----  280 (344)
                      +|++|+++|++.       ..+.++.  ++|++.++    . .....+++||+++++||  |.++|+++|.++++.    
T Consensus       145 ~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~  224 (805)
T PLN02724        145 KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSN  224 (805)
T ss_pred             cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccc
Confidence            899999998762       1233332  45655431    0 00113568999999997  999999988776542    


Q ss_pred             -----CcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          281 -----SWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       281 -----g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                           +|+++|||||++ |+.++||+++++||++||+||| ||+|+|+|+||+|+++++
T Consensus       225 ~~~~g~~~v~vDaaQ~~-g~~piDv~~~~~Dfl~~S~HK~-~GgP~G~G~L~vr~~~~~  281 (805)
T PLN02724        225 FSKSGRWMVLLDAAKGC-GTSPPDLSRYPADFVVVSFYKI-FGYPTGLGALLVRRDAAK  281 (805)
T ss_pred             cccCcceEEEeehhhhc-CCCCCChhhcCCCEEEEeccee-ccCCCCceEEEEehhhhh
Confidence                 479999999999 9999999999999999999999 999999999999998754

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.97  E-value=8.5e-30  Score=248.49  Aligned_cols=195  Identities=22%  Similarity=0.208  Sum_probs=161.3

Q ss_pred             cccchHHHHHHhhccCC----CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--CCCCCCeE-
Q 035915          131 RTQLEPSRLLDILTKKS----SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--PFFRGNFY-  203 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gns----s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--~~~~Gd~i-  203 (344)
                      .|.+...+.....++|+    +..+......++++|+.+++++|++++ ++|+||+|+|+|+++++.++  ++++|+++ 
T Consensus        14 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~-~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl   92 (371)
T PF00266_consen   14 SVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD-EEVVFTSNGTEALNAVASSLLNPLKPGDEVL   92 (371)
T ss_dssp             HHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT-EEEEEESSHHHHHHHHHHHHHHHGTTTCEEE
T ss_pred             HHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc-cccccccccchhhhhhhhccccccccccccc
Confidence            45555455544456653    234555667889999999999999872 48999999999999999998  57889985 


Q ss_pred             EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          204 MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       204 vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                      ++..||+.+  .|..++++.|++|+++|.+. ++.++.+++++.+++     +++||++++++|  |+++|+++|.+ +|
T Consensus        93 ~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~-~~~~~~~~~~~~l~~-----~~~lv~~~~~~~~tG~~~pi~~I~~~~~  166 (371)
T PF00266_consen   93 VTSNEHPSNRYPWEEIAKRKGAEVRVIPADP-GGSLDLEDLEEALNP-----DTRLVSISHVENSTGVRNPIEEIAKLAH  166 (371)
T ss_dssp             EEESSHHHHHHHHHHHHHHTTEEEEEEEEGT-TSSCSHHHHHHHHHT-----TESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhhccccccc-cchhhhhhhhhhhcc-----ccceEEeecccccccEEeeeceehhhhh
Confidence            588998854  47888888999999999876 478899999999975     589999999985  99999988864 79


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|+++++||+|++ |..++|++++++||+++|+||+ +| |.|+|+||+|+++.+.
T Consensus       167 ~~~~~~~vD~~~~~-g~~~id~~~~~~D~~~~s~~Kl-~g-p~G~g~l~v~~~~~~~  220 (371)
T PF00266_consen  167 EYGALLVVDAAQSA-GCVPIDLDELGADFLVFSSHKL-GG-PPGLGFLYVRPEAIER  220 (371)
T ss_dssp             HTTSEEEEE-TTTT-TTSS--TTTTTESEEEEESTST-TS-SSTEEEEEEEHHHHHH
T ss_pred             ccCCceeEechhcc-ccccccccccccceeeeccccc-CC-CCchhhheehhhhhhc
Confidence            99999999999999 9999999999999999999995 66 9999999999976654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.96  E-value=1.2e-28  Score=243.83  Aligned_cols=193  Identities=13%  Similarity=0.125  Sum_probs=157.8

Q ss_pred             cccchHHHHHHhhccCC----CChhhhhhHHHHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCe
Q 035915          131 RTQLEPSRLLDILTKKS----SFPGSFISIPEIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESY---PFFRGNF  202 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gns----s~~g~~as~~le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~  202 (344)
                      .|.++..+......+|.    ...+......++++|+.||+++|+ +++  +|+||+|+|+++++++.++   .+++|++
T Consensus        38 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~--~v~~t~g~t~~l~~~~~~~~~~~~~~gd~  115 (406)
T PRK09295         38 QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDN  115 (406)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCcCE
Confidence            34444444443344442    233556777889999999999998 444  7999999999999999987   4578988


Q ss_pred             E-EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-H
Q 035915          203 Y-MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-E  276 (344)
Q Consensus       203 i-vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~  276 (344)
                      + ++..+|+.+  .|+.+++..|++++.+|.+. ++.++.++|++++++     +++||++++++|  |+++|+++|. .
T Consensus       116 vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~-----~t~lv~l~~~~n~tG~~~~~~~i~~~  189 (406)
T PRK09295        116 IIISEMEHHANIVPWQMLCARVGAELRVIPLNP-DGTLQLETLPALFDE-----RTRLLAITHVSNVLGTENPLAEMIAL  189 (406)
T ss_pred             EEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCCCCHHHHHHhcCC-----CcEEEEEecchhcccccCCHHHHHHH
Confidence            5 577888743  56777788899999999875 577899999998865     478999999886  9999998775 5


Q ss_pred             HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|++|+++++|++|++ |+.++|+..+++||+++|+||+ +| |.|+|+||+++++.+
T Consensus       190 ~~~~~~~vivD~a~~~-g~~~~~~~~~~~D~~~~s~~K~-~g-p~G~G~l~~~~~~~~  244 (406)
T PRK09295        190 AHQHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKL-YG-PTGIGILYVKEALLQ  244 (406)
T ss_pred             HHHcCCEEEEEccccc-CccccCchhcCCCEEEeehhhc-cC-CCCcEEEEEchHhHh
Confidence            7999999999999999 9999999999999999999997 87 999999999987654

>PLN02651 cysteine desulfurase

Probab=99.96  E-value=8.8e-28  Score=234.35  Aligned_cols=193  Identities=17%  Similarity=0.071  Sum_probs=154.4

Q ss_pred             cccchHHHHHHhhccCCCC----hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCeE
Q 035915          131 RTQLEPSRLLDILTKKSSF----PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---PFFRGNFY  203 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~----~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~i  203 (344)
                      .|.++..+......+|+..    .+......++++|+.+++++|++++  +|+||+|+|+|+|+++.++   .+++|+++
T Consensus        14 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~t~~~t~a~~~~l~~~~~~~~~~g~~v   91 (364)
T PLN02651         14 RVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK--EIIFTSGATESNNLAIKGVMHFYKDKKKHV   91 (364)
T ss_pred             HHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhccCCCCEE
Confidence            3444433333334555432    2445566789999999999999876  7999999999999887654   23678885


Q ss_pred             -EEcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-H
Q 035915          204 -MTIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-A  277 (344)
Q Consensus       204 -vS~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-a  277 (344)
                       ++..+|+.  ..|..++ ..|++++.+|.++ ++.++.++|++++++     +++||++++++|  |.++|+++|.+ +
T Consensus        92 l~~~~~h~s~~~~~~~~~-~~g~~v~~v~~~~-~~~~d~~~l~~~i~~-----~t~lv~v~~~~n~tG~~~~l~~I~~~~  164 (364)
T PLN02651         92 ITTQTEHKCVLDSCRHLQ-QEGFEVTYLPVKS-DGLVDLDELAAAIRP-----DTALVSVMAVNNEIGVIQPVEEIGELC  164 (364)
T ss_pred             EEcccccHHHHHHHHHHH-hcCCEEEEEccCC-CCcCCHHHHHHhcCC-----CcEEEEEECCCCCceecccHHHHHHHH
Confidence             46778873  4555554 5799999999875 578899999999875     478999998886  99999988865 6


Q ss_pred             HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          278 HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |++|++++||++|++ |+.++|++++++||+++|+||| +| |.|+|+||+|++..+.
T Consensus       165 ~~~g~~~~vD~a~~~-g~~~~~~~~~~~D~~~~s~hK~-~g-p~G~g~l~v~~~~~~~  219 (364)
T PLN02651        165 REKKVLFHTDAAQAV-GKIPVDVDDLGVDLMSISGHKI-YG-PKGVGALYVRRRPRVR  219 (364)
T ss_pred             HHcCCEEEEEcchhh-CCcccCcccCCCCEEEechhhh-CC-CCceEEEEEcCCCCCC
Confidence            999999999999999 9999999999999999999998 66 9999999999976654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.96  E-value=1.4e-27  Score=235.09  Aligned_cols=193  Identities=13%  Similarity=0.100  Sum_probs=158.6

Q ss_pred             ccchHHHHHHhhccCCC----ChhhhhhHHHHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCeE
Q 035915          132 TQLEPSRLLDILTKKSS----FPGSFISIPEIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESY---PFFRGNFY  203 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss----~~g~~as~~le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~i  203 (344)
                      |.+...+......+|..    ..+......++++|+.+|+++|+ +++  +|+||+|+|+++++++.++   .+++|+++
T Consensus        35 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--~i~~~~~~t~~i~~~~~~~~~~~~~~gd~v  112 (401)
T PRK10874         35 VIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAK--NIVWTRGTTESINLVAQSYARPRLQPGDEI  112 (401)
T ss_pred             HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCC--EEEEECCHHHHHHHHHHHhhhccCCCcCEE
Confidence            43433333333445522    24556667789999999999999 555  7999999999999999998   47889985


Q ss_pred             -EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-H
Q 035915          204 -MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-A  277 (344)
Q Consensus       204 -vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-a  277 (344)
                       ++..+|+.+  .|..+++..|++++.+|.+. ++.++.+++++.+++     +|+||++++.+|  |.++|+++|.+ +
T Consensus       113 l~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~-----~t~lv~i~~~~n~tG~~~~~~~i~~l~  186 (401)
T PRK10874        113 IVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DRLPDVDLLPELITP-----RTRILALGQMSNVTGGCPDLARAITLA  186 (401)
T ss_pred             EECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CCcCCHHHHHHhcCc-----CcEEEEEeCCcccccCcCCHHHHHHHH
Confidence             577888743  56777788899999999875 467899999998865     478999999887  99999988865 6


Q ss_pred             HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          278 HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|+++++|++|++ |+.++|+..+++||+++|+||+ || |.|+|+||++++..+.
T Consensus       187 ~~~g~~~ivD~a~~~-g~~~~~~~~~~~d~~~~s~~K~-~g-p~G~G~l~~~~~~~~~  241 (401)
T PRK10874        187 HQAGMVVMVDGAQGA-VHFPADVQALDIDFYAFSGHKL-YG-PTGIGVLYGKSELLEA  241 (401)
T ss_pred             HHcCCEEEEECCccc-ccccCCchhcCCCEEEEecccc-cC-CCccEEEEEchHHHhc
Confidence            999999999999999 9999999999999999999997 87 9999999999886654

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=8.5e-27  Score=229.40  Aligned_cols=194  Identities=15%  Similarity=0.139  Sum_probs=157.7

Q ss_pred             cccchHHHHHHhhccCCC---C-hhhhhhHHHHHHHHHHHHHcCCC-CCCCeEEEeCCHHHHHHHHHhhC---CCCCCCe
Q 035915          131 RTQLEPSRLLDILTKKSS---F-PGSFISIPEIQARNKVLKHCGLP-DDEYLVLFTPNYRDAMMLVGESY---PFFRGNF  202 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss---~-~g~~as~~le~AR~~IA~~Lga~-p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~  202 (344)
                      .|.++..+......+|+.   + .+......++++|+.+|+++|++ ++  +|+||+|+|+|+++++.++   .+++|++
T Consensus        31 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--~i~~t~g~t~~l~~~~~~~~~~~~~~gd~  108 (398)
T TIGR03392        31 AVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAE--NIVWTRGTTESINLVAQSYARPRLQPGDE  108 (398)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEEEeCChHHHHHHHHHHhhhccCCCCCE
Confidence            444444444443445532   2 34455667899999999999995 44  7999999999999999998   4688998


Q ss_pred             E-EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-
Q 035915          203 Y-MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-  276 (344)
Q Consensus       203 i-vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-  276 (344)
                      | ++..+|+.+  .+..+++..|++++.+|.+. ++.++.++|++++++     +|+||++++.+|  |.++|++.|.+ 
T Consensus       109 Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~~i~~-----~t~lv~i~~~~n~tG~~~~~~~i~~~  182 (398)
T TIGR03392       109 IIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA-DLLPDIRQLPELLTP-----RTRILALGQMSNVTGGCPDLARAITL  182 (398)
T ss_pred             EEECCcchhHHHHHHHHHHHHcCcEEEEEecCC-CCCcCHHHHHHHhcc-----CceEEEEECccccccccCCHHHHHHH
Confidence            5 467788743  46667788899999999875 467889999998865     478999999887  99999988764 


Q ss_pred             HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          277 AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|++|+++++|++|++ |+.++|+..+++||+++|+||+ || |.|+|+||++++..+.
T Consensus       183 ~~~~~~~~ivD~a~~~-~~~~~~~~~~~~d~~~~s~~K~-~g-p~G~G~l~~~~~~~~~  238 (398)
T TIGR03392       183 AHQYGAVVVVDGAQGV-VHGPPDVQALDIDFYAFSGHKL-YG-PTGIGVLYGKTELLEA  238 (398)
T ss_pred             HHHcCCEEEEEhhhhc-CCCCCChhhcCCCEEEEecccc-cC-CCceEEEEEcHHHHhh
Confidence            6999999999999999 9999999999999999999997 87 8899999999876543

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.95  E-value=9.3e-27  Score=231.72  Aligned_cols=194  Identities=15%  Similarity=0.094  Sum_probs=156.5

Q ss_pred             ccchHHHHHHhhccC----CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCeEE
Q 035915          132 TQLEPSRLLDILTKK----SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---PFFRGNFYM  204 (344)
Q Consensus       132 v~~~~~~L~~~L~gn----ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~iv  204 (344)
                      |.+...+......+|    ..+.+......++++|+.+|+++|+++. ++|+||+|+|+++++++.++   .+.+|+.++
T Consensus        48 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl  126 (424)
T PLN02855         48 VLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS-REIVFTRNATEAINLVAYTWGLANLKPGDEVI  126 (424)
T ss_pred             HHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC-CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEE
Confidence            444444433334444    2234455556789999999999999632 37999999999999999876   467898854


Q ss_pred             -EcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          205 -TIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       205 -S~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                       +..+|+.  ..|+.++++.|++++.+|.+.. +.++.++|++.+++     +++||++++++|  |.++|+++|.+ +|
T Consensus       127 ~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~-~~~~~~~l~~~i~~-----~t~lv~i~~~~n~tG~~~~~~~I~~l~~  200 (424)
T PLN02855        127 LSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD-EVLDVEQLKELLSE-----KTKLVATHHVSNVLGSILPVEDIVHWAH  200 (424)
T ss_pred             ECCCccHHHHHHHHHHHHHcCCEEEEEecCCC-CCcCHHHHHHHhcc-----CceEEEEeCccccccccCCHHHHHHHHH
Confidence             6778873  3577778888999999998753 56899999998865     478999999887  99999987754 79


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|+++++|++|++ |+.++|+.++++||+++|+||+ +| |.|+|+||++++.++.
T Consensus       201 ~~g~~vivD~a~~~-g~~~~~~~~~~~d~~~~s~~K~-~g-p~G~G~l~~~~~~~~~  254 (424)
T PLN02855        201 AVGAKVLVDACQSV-PHMPVDVQTLGADFLVASSHKM-CG-PTGIGFLWGKSDLLES  254 (424)
T ss_pred             HcCCEEEEEhhhhc-CCcCCCchhcCCCEEEeecccc-cC-CCccEEEEEchhhhhc
Confidence            99999999999999 9999999999999999999997 77 9999999999887554

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.94  E-value=6.6e-26  Score=221.43  Aligned_cols=189  Identities=19%  Similarity=0.119  Sum_probs=150.4

Q ss_pred             cccch-HHHHHHhhccCCCC---hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--CCCCCeE-
Q 035915          131 RTQLE-PSRLLDILTKKSSF---PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--FFRGNFY-  203 (344)
Q Consensus       131 ~v~~~-~~~L~~~L~gnss~---~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~~~Gd~i-  203 (344)
                      .|..+ .+.+. ...+|+..   .+......++++|+.+++++|++++  +|+||+|+|+|+++++.++.  +.+|+.+ 
T Consensus        14 ~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~i~~t~~~t~a~~~al~~~~~~~~~~~~vv   90 (379)
T TIGR03402        14 EVLEAMLPYFT-EYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD--EIIFTSGGTESDNTAIKSALAAQPEKRHII   90 (379)
T ss_pred             HHHHHHHHHHH-hcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHHHHHHhcCCCCeEE
Confidence            34444 34443 34566332   2344566789999999999999865  79999999999999888652  3456775 


Q ss_pred             EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          204 MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       204 vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                      ++..+|+.+  .+..+ ++.|++++.+|.++ ++.++.++|++.+++     ++++|++++.+|  |.++|++.|.+ +|
T Consensus        91 ~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~-~g~~~~~~l~~~i~~-----~~~lv~i~~~~n~tG~~~~~~~I~~l~~  163 (379)
T TIGR03402        91 TTAVEHPAVLSLCQHL-EKQGYKVTYLPVDE-EGRLDLEELRAAITD-----DTALVSVMWANNETGTIFPIEEIGEIAK  163 (379)
T ss_pred             EcccccHHHHHHHHHH-HHcCCEEEEEccCC-CCcCCHHHHHHhcCC-----CcEEEEEEcccCCeeecccHHHHHHHHH
Confidence            467888732  34444 44799999999875 477899999998865     478999998886  99999988864 69


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ++|+++++|++|++ |+.++|+.++++||+++|+||+ +| |.|+|+||+|++.
T Consensus       164 ~~g~~vivD~~~~~-g~~~~~~~~~~~D~~~~s~~K~-~g-p~G~g~l~v~~~~  214 (379)
T TIGR03402       164 ERGALFHTDAVQAV-GKIPIDLKEMNIDMLSLSGHKL-HG-PKGVGALYIRKGT  214 (379)
T ss_pred             HcCCEEEEECcccc-cccccCcccCCCCEEEEcHHHc-CC-CCceEEEEECCCC
Confidence            99999999999999 9999999999999999999996 77 9999999999764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.94  E-value=1e-25  Score=221.54  Aligned_cols=192  Identities=16%  Similarity=0.140  Sum_probs=156.1

Q ss_pred             ccchHHHHHHhhccCCC----ChhhhhhHHHHHHHHHHHHHcCCC-CCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeE
Q 035915          132 TQLEPSRLLDILTKKSS----FPGSFISIPEIQARNKVLKHCGLP-DDEYLVLFTPNYRDAMMLVGESYP---FFRGNFY  203 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss----~~g~~as~~le~AR~~IA~~Lga~-p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~i  203 (344)
                      +.+...++....++|.+    +.+......++++|+.+++++|++ ++  +|+||+|+|+++++++.++.   +.+|+++
T Consensus        34 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~--~v~~~~g~t~~l~~~~~~~~~~~~~~g~~v  111 (403)
T TIGR01979        34 VIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDE--EIVFTRGTTESINLVAYSWGDSNLKAGDEI  111 (403)
T ss_pred             HHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCC--eEEEeCCHHHHHHHHHHHhhhhcCCCCCEE
Confidence            44444344443445532    344555667899999999999998 44  79999999999999998863   5678886


Q ss_pred             -EEcCCcCHH--HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-H
Q 035915          204 -MTIIGEELD--YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-A  277 (344)
Q Consensus       204 -vS~~eH~~~--~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-a  277 (344)
                       ++..+|+..  .++.+++..|++++.+|.+. ++.++.++|++.+++     ++++|++++++|  |+++|+++|.+ +
T Consensus       112 l~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~-----~~~lv~~~~~~~~tG~~~~~~~i~~~~  185 (403)
T TIGR01979       112 VISEMEHHANIVPWQLLAERTGATLKFIPLDD-DGTLDLDDLEKLLTE-----KTKLVAITHVSNVLGTVNPVEEIAKLA  185 (403)
T ss_pred             EECcchhhHHHHHHHHHHHhcCcEEEEEecCC-CCCCCHHHHHHHhcc-----CCeEEEEEcccccccccCCHHHHHHHH
Confidence             567788743  46667777899999999874 578899999998865     478999998886  99999988865 6


Q ss_pred             HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          278 HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      |++|+++++|++|++ |+.++|+..+++||+++|+||+ || |.|+|+||++++..+
T Consensus       186 ~~~~~~~ivD~a~~~-g~~~~~~~~~~~d~~~~s~~K~-~g-p~G~g~l~~~~~~~~  239 (403)
T TIGR01979       186 HQVGAKVLVDGAQAV-PHMPVDVQALDCDFYVFSGHKM-YG-PTGIGVLYGKEELLE  239 (403)
T ss_pred             HHcCCEEEEEchhhc-CccccCccccCCCEEEEecccc-cC-CCCceEEEEchHHHh
Confidence            999999999999999 9999999999999999999998 87 999999999987644

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.94  E-value=2e-25  Score=218.57  Aligned_cols=190  Identities=16%  Similarity=0.102  Sum_probs=153.6

Q ss_pred             cccchHHHHHHhhccCCCC---hhhhhhHHHHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhCCC----CC-CC
Q 035915          131 RTQLEPSRLLDILTKKSSF---PGSFISIPEIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESYPF----FR-GN  201 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~---~g~~as~~le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl~~----~~-Gd  201 (344)
                      .|..+..+.....++|++.   .+......++++|+++++++|+ +++  +|+||+|+||++++++.++.+    .+ ++
T Consensus        14 ~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~--~i~~t~g~teal~~~~~~~~~~~~~~~~~~   91 (382)
T TIGR03403        14 KVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLD--DIIITSCATESNNWVLKGVYFDEILKGGKN   91 (382)
T ss_pred             HHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCC--eEEEeCCHHHHHHHHHHHHHHhhcccCCCC
Confidence            5666666666556677432   3445566789999999999998 454  799999999999999988642    34 45


Q ss_pred             e-EEEcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH
Q 035915          202 F-YMTIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE  276 (344)
Q Consensus       202 ~-ivS~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~  276 (344)
                      + +++..+|+.  ..+. .++..|++++.+|.+. ++.++.++|++.+++     ++++|++++.+|  |+++|+++|.+
T Consensus        92 ~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~-~g~~d~~~l~~~i~~-----~t~lv~~~~~~n~tG~~~~~~~I~~  164 (382)
T TIGR03403        92 HIITTEVEHPAVRATCA-FLESLGVEVTYLPINE-QGTITAEQVREAITE-----KTALVSVMWANNETGMIFPIKEIGE  164 (382)
T ss_pred             EEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCC-CCCCCHHHHHHhccc-----CCeEEEEEcccCCCccccCHHHHHH
Confidence            5 457788883  3444 3456799999999875 478899999988865     478999998887  99999988865


Q ss_pred             -HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          277 -AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                       ++++|+++++|++|++ |+.++|+.++++||+++|+||| +| |.|+|+||+|++.
T Consensus       165 la~~~g~~~ivD~a~~~-g~~~~~~~~~~~D~~~~s~~K~-~g-p~G~g~l~vr~~~  218 (382)
T TIGR03403       165 ICKERGVLFHTDAVQAI-GKIPVDVQKAGVDFLSFSAHKF-HG-PKGVGGLYIRKGV  218 (382)
T ss_pred             HHHHcCCEEEEechhhc-CCCccCccccCCCEEEEcchhh-CC-CCceEEEEECCCC
Confidence             6999999999999999 9999999999999999999998 87 9999999999865

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR01814 kynureninase kynureninase

Probab=99.93  E-value=2.9e-25  Score=220.09  Aligned_cols=167  Identities=14%  Similarity=0.091  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC---CeEE-EcCCcCH--HHHHHHHHcCCcEE----E
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG---NFYM-TIIGEEL--DYVREFASFKESKV----I  226 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G---d~iv-S~~eH~~--~~ir~la~~~G~kV----~  226 (344)
                      .+.++++++ +++|++++  +|+||+|+|+++|+++.++ ++++   +.|+ +..+|+.  ..|+..+++.|+++    +
T Consensus        71 ~~~~~~~~~-~l~g~~~~--~v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~  146 (406)
T TIGR01814        71 TLDESLLKL-RLVGAKED--EVVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMV  146 (406)
T ss_pred             hhhhhhccc-cccCCCCC--cEEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceE
Confidence            344454556 89999876  6999999999999999987 4443   2454 5678874  34565566778887    4


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .++.++ ++.++.+++++.++..  ..+|++|++++++|  |.++|++.|.+ ||++|++++||++|++ |+.++|+.++
T Consensus       147 ~~~~~~-~g~~~~~~l~~~~~~~--~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~-G~~~id~~~~  222 (406)
T TIGR01814       147 QIEPRE-EETLRLEDILDTIEKN--GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAV-GNVPLDLHDW  222 (406)
T ss_pred             EeccCC-CCccCHHHHHHHHHhc--CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEccccc-CCcccccccC
Confidence            566554 4677888888887531  13689999999985  99999988865 6999999999999999 9999999999


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++||+++|+||||+|+| | |+||++++..
T Consensus       223 gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~  250 (406)
T TIGR01814       223 GVDFACWCTYKYLNAGP-G-AGAFVHEKHA  250 (406)
T ss_pred             CCCEEEEcCccccCCCC-C-eEEEEehhhh
Confidence            99999999999955545 9 8788866543

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.93  E-value=5.5e-25  Score=217.88  Aligned_cols=172  Identities=20%  Similarity=0.157  Sum_probs=144.2

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeE-EEcCCcCH--HHHHHHHHcCCcE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFY-MTIIGEEL--DYVREFASFKESK  224 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~i-vS~~eH~~--~~ir~la~~~G~k  224 (344)
                      +......++++|+.+++++|++++  +|+||+|+|+++++++.++.   +.+|+++ ++..+|+.  ..++.+ ++.|++
T Consensus        42 ~~~~~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~  118 (402)
T TIGR02006        42 GWEAEEAVENARNQVAELIGADSR--EIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFE  118 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-HhcCCE
Confidence            334456789999999999999876  69999999999999887753   3578885 46777773  345444 456999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA  301 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs  301 (344)
                      ++++|.++ ++.++.++|++.+++     ++++|++++.+|  |.++|++.|.+ +|++|+++++|++|++ |+.++|+.
T Consensus       119 v~~v~~~~-~~~~d~~~l~~~l~~-----~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~-g~~~~~~~  191 (402)
T TIGR02006       119 VTYLPPKS-NGLIDLEELKAAIRD-----DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSV-GKIPINVN  191 (402)
T ss_pred             EEEEccCC-CCcCCHHHHHHhcCC-----CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhc-CCcccCcc
Confidence            99999875 577899999998864     478999998886  99999988865 6999999999999999 99999999


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++||+++|+||+ +| |.|+|+||++++...
T Consensus       192 ~~~~D~~~~s~~K~-~g-p~G~G~l~~~~~~~~  222 (402)
T TIGR02006       192 ELKVDLMSISGHKI-YG-PKGIGALYVRRKPRV  222 (402)
T ss_pred             ccCCCEEEEehhhh-cC-CCceEEEEEccCCCC
Confidence            99999999999998 87 999999999987554

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.93  E-value=1.1e-24  Score=210.88  Aligned_cols=191  Identities=21%  Similarity=0.176  Sum_probs=151.3

Q ss_pred             cccchHHHHHHhhccCCCC----hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCC-Ce
Q 035915          131 RTQLEPSRLLDILTKKSSF----PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRG-NF  202 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~----~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~G-d~  202 (344)
                      .|.++..+......+|+..    .+......++++|+.+++++|++++  +|+||+|+|+|+++++.++.   +.+| +.
T Consensus        13 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~   90 (353)
T TIGR03235        13 AVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE--EVIFTSGATESNNLAILGLARAGEQKGKKH   90 (353)
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhcccCCCCe
Confidence            4444444443334455332    2444556789999999999999876  69999999999999888763   2355 55


Q ss_pred             E-EEcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-
Q 035915          203 Y-MTIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-  276 (344)
Q Consensus       203 i-vS~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-  276 (344)
                      + ++..+|+.  ..++.+ +..|++++.+|.++ ++.++.++|++.+++     ++++|++++.+|  |.++|++.|.+ 
T Consensus        91 vi~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~-~~~~d~~~l~~~l~~-----~~~lv~~~~~~n~tG~~~~~~~I~~l  163 (353)
T TIGR03235        91 IITSAIEHPAVLEPIRAL-ERNGFTVTYLPVDE-SGRIDVDELADAIRP-----DTLLVSIMHVNNETGSIQPIREIAEV  163 (353)
T ss_pred             eeEcccccHHHHHHHHHH-HhcCCEEEEEccCC-CCcCCHHHHHHhCCC-----CCEEEEEEcccCCceeccCHHHHHHH
Confidence            5 46777873  345444 45699999999875 467899999998864     478999998876  99999988865 


Q ss_pred             HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          277 AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +|++|+++++|++|++ |+.++|++++++||+++|+||| +| |.|+|+||++++..
T Consensus       164 ~~~~~~~~ivD~a~~~-g~~~~~~~~~~~D~~~~s~~K~-~g-p~g~g~l~~~~~~~  217 (353)
T TIGR03235       164 LEAHEAFFHVDAAQVV-GKITVDLSADRIDLISCSGHKI-YG-PKGIGALVIRKRGK  217 (353)
T ss_pred             HHHcCCEEEEEchhhc-CCccccccccCCCEEEeehhhc-CC-CCceEEEEEccCcc
Confidence            6999999999999999 9999999999999999999999 87 99999999998754

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.92  E-value=5.3e-24  Score=208.17  Aligned_cols=171  Identities=14%  Similarity=0.049  Sum_probs=143.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcCH--HHHHHHHHcCCc
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEEL--DYVREFASFKES  223 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~~--~~ir~la~~~G~  223 (344)
                      .+......++++|+.+|+++|++++  +|+||+|+|+++++++.++.   .++|+.++ +..+|+.  ..++ .++..|+
T Consensus        37 ~~~~~~~~~~~~r~~la~~~g~~~~--~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~  113 (381)
T PRK02948         37 IGGTASSLLQVCRKTFAEMIGGEEQ--GIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGY  113 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCC
Confidence            4556667789999999999999865  79999999999998877652   25678754 6778873  3444 3456799


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCC
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNL  300 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL  300 (344)
                      +++.+|.++ ++.++.++|++.+++     +++||++++.+|  |.++|++.|.+ ++++|+++++|++|++ |+.++|+
T Consensus       114 ~v~~v~~~~-~~~~d~~~l~~~l~~-----~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~-g~~~~~~  186 (381)
T PRK02948        114 TVTEIPVDK-SGLIRLVDLERAITP-----DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTF-GKLPIDV  186 (381)
T ss_pred             EEEEEeeCC-CCCCCHHHHHHhcCC-----CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhc-cccccCc
Confidence            999999875 477899999988864     478999998886  99999988865 6899999999999999 9999999


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      .++++|++++|+||+ || |.|+|++|++++.
T Consensus       187 ~~~~~d~~~~s~~K~-~g-p~G~G~l~~~~~~  216 (381)
T PRK02948        187 FEMGIDSLSVSAHKI-YG-PKGVGAVYINPQV  216 (381)
T ss_pred             ccCCCCEEEecHHhc-CC-CCcEEEEEEcCCC
Confidence            999999999999998 88 9999999999875

>PRK14012 cysteine desulfurase; Provisional

Probab=99.92  E-value=5.6e-24  Score=210.57  Aligned_cols=170  Identities=18%  Similarity=0.139  Sum_probs=143.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeE-EEcCCcCH--HHHHHHHHcCCcEEE
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFY-MTIIGEEL--DYVREFASFKESKVI  226 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~i-vS~~eH~~--~~ir~la~~~G~kV~  226 (344)
                      .....++++|+.+|+++|++++  +|+||+|+|+|+++++.++.   +.+|++| ++..+|+.  ..++.+ ++.|++++
T Consensus        46 ~~~~~~~~~r~~ia~~~g~~~~--~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~  122 (404)
T PRK14012         46 QAEEAVDIARNQIADLIGADPR--EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVT  122 (404)
T ss_pred             HHHHHHHHHHHHHHHHcCcCcC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEE
Confidence            3445689999999999999875  69999999999999887653   5688985 46778873  345544 44699999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .++.++ ++.++.++|++++++     ++++|++++.+|  |.++|++.|.+ +|++|+++++|++|++ |+.++|+..+
T Consensus       123 ~v~~~~-~g~~d~~~l~~~i~~-----~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~-g~~~~~~~~~  195 (404)
T PRK14012        123 YLDPQS-NGIIDLEKLEAAMRD-----DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSV-GKVPIDLSKL  195 (404)
T ss_pred             EEccCC-CCcCCHHHHHHhcCC-----CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhc-CCcccCcccC
Confidence            999875 578899999999875     478999998886  99999988865 6999999999999999 9999999999


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++||+++|+||+ +| |.|+|+||++++...
T Consensus       196 ~~D~~~~s~~K~-~g-p~g~G~l~~~~~~~~  224 (404)
T PRK14012        196 KVDLMSFSAHKI-YG-PKGIGALYVRRKPRV  224 (404)
T ss_pred             CCCEEEEehhhc-cC-CCceEEEEEecCCCC
Confidence            999999999997 77 889999999987543

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.92  E-value=1e-23  Score=204.65  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~  230 (344)
                      ....++++|+.+++++|+++. .+|+||+|+|+++++++.++ +++|+.++ +..+|..  ..+..+++..|++++.++.
T Consensus        42 ~~~~~~~~~~~la~~~~~~~~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  119 (376)
T TIGR01977        42 ASREVEETRQLLAKLFNAPSS-AHVVFTNNATTALNIALKGL-LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC  119 (376)
T ss_pred             HHHHHHHHHHHHHHHhCcCCC-CeEEEeCCHHHHHHHHHHhc-cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence            345679999999999999643 27999999999999999885 67899865 5667763  3456667767999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      +. ++.++.++|++.+++     ++++|.+++.+|  |.++|+++|.+ +|++|+++++|++|++ |..++|+..+++||
T Consensus       120 ~~-~~~~d~~~l~~~~~~-----~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~-g~~~~~~~~~~~D~  192 (376)
T TIGR01977       120 DN-EGLISPERIKRAIKT-----NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTA-GVIPIDMTELAIDM  192 (376)
T ss_pred             CC-CCCcCHHHHHHhcCC-----CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhcc-CccCCCchhcCCCE
Confidence            75 467899999998864     478999988776  99999988865 6999999999999999 99999999999999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCC
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +++|+||| +++|.|+|+|+++++.
T Consensus       193 ~~~s~~K~-l~~p~g~g~l~~~~~~  216 (376)
T TIGR01977       193 LAFTGHKG-LLGPQGTGGLYIREGI  216 (376)
T ss_pred             EEeccccc-ccCCCCceEEEEcCCc
Confidence            99999999 7779999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.92  E-value=1.8e-24  Score=213.65  Aligned_cols=165  Identities=9%  Similarity=-0.042  Sum_probs=134.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHHHHHHHhhCCCCC-CCeEEEcCCcCHHHHHHHHHcCCc-EEEEEe
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTP-NYRDAMMLVGESYPFFR-GNFYMTIIGEELDYVREFASFKES-KVILAP  229 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTs-naTeAlnlva~sl~~~~-Gd~ivS~~eH~~~~ir~la~~~G~-kV~~vp  229 (344)
                      .....++++|+.++++||++ ++|+|+|++ |+|+++|.++.++ +++ ++.+++..+|+.++...++++.|+ +++.++
T Consensus        45 ~f~~~~~~~r~~l~~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l-~~~~~~~vi~~g~f~~~~~~~~~~~~g~~~v~~~~  122 (378)
T PRK03080         45 PVKALLKRVIEGTRELLSLP-EGYEVGIVPGSDTGAWEMALWSL-LGARRVDHLAWESFGSKWATDVVKQLKLEDPRVLE  122 (378)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CCceEEEECCchHHHHHHHHHhc-CCCCcceEEEeCHHHHHHHHHHHhhcCCCCceEec
Confidence            45678899999999999995 345899985 9999999999998 553 556666556666544334566788 999988


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      .++ +..++.+++    +.      +++|+++|++|  |.++|++.|.+ |++|++++|||+|++ |+.++|+++  +||
T Consensus       123 ~~~-g~~~d~~~i----~~------~~~V~~~h~~t~tG~~~pi~~I~~-~~~g~~~vVDa~qs~-G~~pidv~~--iD~  187 (378)
T PRK03080        123 ADY-GSLPDLSAV----DF------DRDVVFTWNGTTTGVRVPVARWIG-ADREGLTICDATSAA-FALPLDWSK--LDV  187 (378)
T ss_pred             cCC-CCCCCHhhc----CC------CCCEEEEecCCccceeccchhhcc-ccCCCeEEEeccccc-ccCCCCHHH--CcE
Confidence            775 355665542    21      45789999885  99999998877 889999999999999 999999996  799


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|+||| +++|.|+|+||+++++++.
T Consensus       188 ~~~s~~K~-l~~P~G~g~l~v~~~~~~~  214 (378)
T PRK03080        188 YTFSWQKV-LGGEGGHGMAILSPRAVER  214 (378)
T ss_pred             EEEehhhh-CCCCCceEEEEECHHHHHh
Confidence            99999999 8879999999999987754

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.92  E-value=7.5e-24  Score=205.86  Aligned_cols=174  Identities=11%  Similarity=0.030  Sum_probs=140.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .....++++|+.+++++|+++++..|+||+|+|+|++.++.++.. +|+. ++. ...++.. +..++++.|++++.+|.
T Consensus        32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-~~~~vlv~~~~~~~~~-~~~~a~~~g~~~~~v~~  109 (363)
T TIGR02326        32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-KDGKLLVVINGAYGAR-IVQIAEYLGIPHHVVDT  109 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-CCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeC
Confidence            445578999999999999975433699999999999999999854 5554 443 3322222 34566778999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      ++ ++.++.++++++++.+   .+++++++++.+|  |+++|++.|.+ +|++|+++++|++|++ |..++|+.++++||
T Consensus       110 ~~-~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~-g~~~~~~~~~~~D~  184 (363)
T TIGR02326       110 GE-VEPPDVVEVEAILAAD---PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSF-GGIPIDIAELHIDY  184 (363)
T ss_pred             CC-CCCCCHHHHHHHHhhC---CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccc-cCcccchhhcCccE
Confidence            75 4678999999988752   2456788887765  99999988765 6999999999999999 99999999999999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +++|+||| +++|.|+|+||++++..+
T Consensus       185 ~~~s~~K~-l~~p~G~G~l~~~~~~~~  210 (363)
T TIGR02326       185 LISSANKC-IQGVPGFGFVIARQAELA  210 (363)
T ss_pred             EEecCccc-cccCCcceEEEECHHHHH
Confidence            99999999 766999999999987654

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.91  E-value=6e-24  Score=214.67  Aligned_cols=177  Identities=12%  Similarity=0.006  Sum_probs=139.0

Q ss_pred             cCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEE--eCCHHHHHHHHHhhCCC-------CCC-----Ce-EEEcCCc
Q 035915          145 KKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLF--TPNYRDAMMLVGESYPF-------FRG-----NF-YMTIIGE  209 (344)
Q Consensus       145 gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVF--TsnaTeAlnlva~sl~~-------~~G-----d~-ivS~~eH  209 (344)
                      +|++..+..+ +.++++|+.++++||+++...+++|  |+|+|||+|+.+.+...       ..|     .. |+|..+|
T Consensus        70 ~np~s~~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H  148 (431)
T TIGR01788        70 IDKDEYPQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQ  148 (431)
T ss_pred             CCcccCccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcch
Confidence            5544445554 7889999999999999731014666  79999999987654311       111     23 5677776


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC------
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN------  280 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~------  280 (344)
                      .+  |...++..|++++++|++..++.++.++|++++++     +|.||++++.+|  |+++|++.|+. ++++      
T Consensus       149 ~s--v~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~-----~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~  221 (431)
T TIGR01788       149 VC--WEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDE-----NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGW  221 (431)
T ss_pred             HH--HHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhh-----CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCC
Confidence            64  55556667999999999863358999999999976     478999999886  99999988875 5887      


Q ss_pred             CcEEEeccccc-------CcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          281 SWHVLLDATAL-------VVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       281 g~~vlvDAaQa-------~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      |+++||||+|+       + ++.++|+...++|++++|+||| +++|+|+|+||+|++
T Consensus       222 ~~~~HvDaaq~g~~~p~~~-~~~~~~~~~~~~DSis~s~HK~-~~~P~g~G~l~~r~~  277 (431)
T TIGR01788       222 DIPIHVDAASGGFIAPFVY-PDLEWDFRLPRVKSINVSGHKY-GLVYPGVGWVIWRDE  277 (431)
T ss_pred             CceEEEecccHHHHHHHhC-CCchhhcCCCCceEEEECchhc-cCCCCCcEEEEEeCh
Confidence            89999999999       6 7888888878899999999999 545999999999985

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK02769 histidine decarboxylase; Provisional

Probab=99.91  E-value=1.6e-23  Score=208.29  Aligned_cols=177  Identities=12%  Similarity=-0.020  Sum_probs=140.1

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNF-YMTIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      |..++..++++|+.+|++||+++++.-.+||+|+|||+++.... ..+.++++ +++..+|.+.  ...++..|.+++.+
T Consensus        60 g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv--~ka~~~lg~~~~~V  137 (380)
T PRK02769         60 PLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSV--SKIARLLRIKSRVI  137 (380)
T ss_pred             CCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehH--HHHHHHcCCCCcee
Confidence            44567778999999999999986542358999999997654332 23455666 5678888842  23344457777778


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC---cEEEecccccCcCCcc-----
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS---WHVLLDATALVVGEDR-----  297 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g---~~vlvDAaQa~~G~~~-----  297 (344)
                      |.+. +++++.++|++++++.  ..+|.+|++++.+|  |.+.|+++|.+ ++++|   +++||||||+. +..|     
T Consensus       138 ~~~~-~g~id~~~L~~~i~~~--~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg-~~~p~~~~~  213 (380)
T PRK02769        138 TSLP-NGEIDYDDLISKIKEN--KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSG-MILPFVNNP  213 (380)
T ss_pred             ccCC-CCcCcHHHHHHHHHhC--CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccc-eeecccCcc
Confidence            8764 6889999999999763  23578999999886  99999988865 68887   69999999999 9995     


Q ss_pred             --CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          298 --LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       298 --LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                        +|+.. ++|++++|+||| +|+|.|+|+||+|++.++.
T Consensus       214 ~~~d~~~-~vDsis~s~HK~-~~~P~g~G~l~~r~~~~~~  251 (380)
T PRK02769        214 PPFSFAD-GIDSIAISGHKF-IGSPMPCGIVLAKKKYVER  251 (380)
T ss_pred             ccCCccC-CCCEEEECCccc-CCCCCCcEEEEEehhhhhh
Confidence              88877 999999999999 7789999999999876553

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.91  E-value=3.9e-23  Score=202.56  Aligned_cols=170  Identities=18%  Similarity=0.150  Sum_probs=143.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--CCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--PFFRGNFYM-TIIGEEL--DYVREFASFKESKVILA  228 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~v  228 (344)
                      ....++++|+.+++++|++++  +|+||+|+|++++++..++  .+++|++++ +..+|..  ..|...++..|++++.+
T Consensus        58 ~~~~~~~l~~~ia~~~~~~~~--~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~  135 (397)
T TIGR01976        58 ADQVVDDAREAVADLLNADPP--EVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWA  135 (397)
T ss_pred             HHHHHHHHHHHHHHHcCCCCC--eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEE
Confidence            445679999999999999765  6999999999999988876  467899865 5667763  34556677789999999


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +.+..++.++.++|++.+++     ++++|++++.+|  |.++|++.|.+ +|++|+++++|++|++ |..++|+.++++
T Consensus       136 ~~~~~~~~~~~~~l~~~i~~-----~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~-~~~~~~~~~~~~  209 (397)
T TIGR01976       136 RVDEATGELHPDDLASLLSP-----RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYA-PHGLIDVQATGA  209 (397)
T ss_pred             eccccCCCcCHHHHHHhcCC-----CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhc-cccCCCHHHcCC
Confidence            98754577899999998864     478999998886  99999988865 6999999999999999 999999999999


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ||+++|+||| || | ++|+++++++..+
T Consensus       210 d~~~~s~~K~-~g-~-~~G~l~~~~~~~~  235 (397)
T TIGR01976       210 DFLTCSAYKF-FG-P-HMGILWGRPELLM  235 (397)
T ss_pred             CEEEEechhh-cC-C-ceEEEEEcHHHHh
Confidence            9999999999 87 7 4999999987643

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.91  E-value=3.3e-23  Score=205.91  Aligned_cols=179  Identities=10%  Similarity=0.033  Sum_probs=149.1

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      +......++++|+.+++++|++++ +.++||+++|++++.++.++ +++||+++ +..+|....|..++++.|++++.++
T Consensus        37 ~~~~~~~~~~~~~~l~~~~g~~~~-~~vi~~~~gt~a~~~a~~~~-~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~  114 (401)
T PLN02409         37 SPAFPALTKELLEDVKYIFKTKSG-TPFIFPTTGTGAWESALTNT-LSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE  114 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHhc-CCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence            344556789999999999999753 47999999999999888775 68999854 5667776667777888899999999


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-H--HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-E--AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~--ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      .++. ..++.++|++++++.. ..++++|++++.+|  |.++|++.|. .  +|++|+++++|++|++ |..++|+.+++
T Consensus       115 ~~~~-~~~~~~~l~~~l~~~~-~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~-g~~~id~~~~~  191 (401)
T PLN02409        115 SPWG-QGADLDILKSKLRQDT-NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI-GALDFRMDEWG  191 (401)
T ss_pred             CCCC-CCCCHHHHHHHHhhCc-CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEccccc-CCccccccccC
Confidence            8763 4578999999987521 02578999998875  9999998775 5  6889999999999999 99999999999


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +||+++|+||| |++|.|+|+||+++++.+.
T Consensus       192 ~D~~~~s~~K~-l~~P~G~G~l~~~~~~~~~  221 (401)
T PLN02409        192 VDVALTGSQKA-LSLPTGLGIVCASPKALEA  221 (401)
T ss_pred             ccEEEEcCccc-cCcCCCcceeEECHHHHHH
Confidence            99999999999 7779999999999877554

>PLN03032 serine decarboxylase; Provisional

Probab=99.89  E-value=1.5e-22  Score=201.36  Aligned_cols=177  Identities=13%  Similarity=0.034  Sum_probs=139.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNF-YMTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      .|..+++.++++|+.+|++||++++++.-+||+|+|||+++.+.+.. ..++.. +++..+|.+  +...++..|.+++.
T Consensus        60 ~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~S--v~kaa~~lg~~~~~  137 (374)
T PLN03032         60 YGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMEAVK  137 (374)
T ss_pred             CCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeH--HHHHHHHcCCCCeE
Confidence            45677888999999999999998774334999999999987665421 123334 568888874  22334556777888


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC-----cEEEecccccCcCCccC-
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS-----WHVLLDATALVVGEDRL-  298 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g-----~~vlvDAaQa~~G~~~L-  298 (344)
                      +|++. +|+++.++|+++++++.  ..+.+|++++.+|  |++.|+++|+. ++++|     +++||||||+. +..++ 
T Consensus       138 V~~d~-~g~id~~~L~~~i~~~~--~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg-~~~p~~  213 (374)
T PLN03032        138 VPTLP-SGEIDYDDLERALAKNR--DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFG-LMMPFV  213 (374)
T ss_pred             eeeCC-CCcCcHHHHHHHHHHcC--CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchh-hhhhcc
Confidence            99876 68999999999997632  2467899988876  99999998876 57775     58999999999 98885 


Q ss_pred             ------CCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          299 ------NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       299 ------DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                            |+. .++|.+++|+||| +|.|+|+|+|++|++..+
T Consensus       214 ~~~~~~~~~-~~vDSis~s~HK~-~g~P~g~G~ll~r~~~~~  253 (374)
T PLN03032        214 SRAPEVTFR-KPIGSVSVSGHKF-LGCPMPCGVALTRKKHVK  253 (374)
T ss_pred             CCCcccCCC-cCCcEEEECcccc-cCCCcCeEEEEEEchhhH
Confidence                  554 4799999999998 777999999999987654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.89  E-value=3.4e-22  Score=194.08  Aligned_cols=197  Identities=17%  Similarity=0.122  Sum_probs=155.7

Q ss_pred             CCcccccchHHHHHHhhccCCC----ChhhhhhHHHHHHHHHHHHHcCCC-CCCCeEEEeCCHHHHHHHHHhhCCCC--C
Q 035915          127 PDLDRTQLEPSRLLDILTKKSS----FPGSFISIPEIQARNKVLKHCGLP-DDEYLVLFTPNYRDAMMLVGESYPFF--R  199 (344)
Q Consensus       127 p~~s~v~~~~~~L~~~L~gnss----~~g~~as~~le~AR~~IA~~Lga~-p~ey~VVFTsnaTeAlnlva~sl~~~--~  199 (344)
                      |+...+++..+.+.. ...|++    ..+......++++|+.+++++|++ ++  .|+||+|+|+|+++++.++...  +
T Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~l~~~~~~   87 (373)
T cd06453          11 KPQPVIDAIVDYYRH-YNANVHRGVHELSARATDAYEAAREKVARFINAPSPD--EIIFTRNTTEAINLVAYGLGRANKP   87 (373)
T ss_pred             CCHHHHHHHHHHHHh-cCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEEEeCCHHHHHHHHHHHhhhcCCC
Confidence            334455555555543 455532    223445566799999999999997 43  7999999999999999998654  7


Q ss_pred             CCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH
Q 035915          200 GNFYM-TIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI  274 (344)
Q Consensus       200 Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I  274 (344)
                      |+.++ +..+|..  ..+..+++..|++++.+|.++ ++.++.++|++.+.+     ++++|.+++.+|  |.+.|++.|
T Consensus        88 g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~-----~~~~v~~~~~~~~tG~~~~~~~i  161 (373)
T cd06453          88 GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQLDLEALEKLLTE-----RTKLVAVTHVSNVLGTINPVKEI  161 (373)
T ss_pred             CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCcCHHHHHHHhcC-----CceEEEEeCcccccCCcCCHHHH
Confidence            88754 5666663  245566667799999999875 578999999998865     478999998876  999999877


Q ss_pred             H-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          275 S-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       275 a-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      . .|+++|+++++|++|+. |..++++..+++|++++|+||| +++ .|+|+++++++..+.
T Consensus       162 ~~~~~~~~~~li~D~a~~~-~~~~~~~~~~~~d~~~~s~~K~-~~~-~g~g~~~~~~~~~~~  220 (373)
T cd06453         162 GEIAHEAGVPVLVDGAQSA-GHMPVDVQDLGCDFLAFSGHKM-LGP-TGIGVLYGKEELLEE  220 (373)
T ss_pred             HHHHHHcCCEEEEEhhhhc-CceeeeccccCCCEEEeccccc-cCC-CCcEEEEEchHHhhc
Confidence            6 47999999999999999 9999999989999999999999 885 699999999876544

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.89  E-value=3e-23  Score=203.13  Aligned_cols=164  Identities=11%  Similarity=0.124  Sum_probs=123.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCC-HHHHHHHHHhhC--CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPN-YRDAMMLVGESY--PFFRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsn-aTeAlnlva~sl--~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ...+.++++|+.+++|||++ ++++|+||+| +|+|+|+++.++  ++.+|++++ +.++|+   +..++++.|++++++
T Consensus        41 ~~~~~~~~~r~~l~~l~~~~-~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~---~~~~a~~~g~~~~~~  116 (355)
T cd00611          41 DFEAIVNEAESDLRELLNIP-DNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAK---AAKEAKRYGGVVVIV  116 (355)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH---HHHHHHhcCCCcEEE
Confidence            44567899999999999984 4558999988 999999999998  334666654 455533   244667789999998


Q ss_pred             eCCCCCCcc-C-HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          229 PEAWLDLRI-K-GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       229 p~~~~~g~i-~-~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +.+.. +.+ + .+..+..+++     ++++|+++|++|  |++++  ++.  +.+|++++|||+|++ |+.++|+++++
T Consensus       117 ~~~~~-g~~~~~~~~~~~~~~~-----~~~lV~~~h~~t~tG~~~~--~i~--~~~g~~~~VDa~qs~-g~~~idv~~~~  185 (355)
T cd00611         117 AAKEE-GKYTKIPDVETWDLAP-----DAAYVHYCSNETIHGVEFD--EVP--DTGGVPLVADMSSNI-LSRPIDVSKFG  185 (355)
T ss_pred             ecccc-cCCCCCCCHhhcCCCC-----CCCEEEEeCCcccccEEcc--eec--ccCCCeEEEEccccc-cCCCCCHHHhC
Confidence            87532 212 2 1212222332     578999999987  98743  333  458999999999999 99999999876


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +  +++|+||+ || |.|+|+||+|+++.+.
T Consensus       186 ~--~~ss~~K~-lG-P~G~g~l~~~~~~~~~  212 (355)
T cd00611         186 V--IYAGAQKN-LG-PAGVTVVIVRKDLLGK  212 (355)
T ss_pred             E--EEeecccc-cC-CCceEEEEECHHHHhh
Confidence            5  44779998 88 9999999999987754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.88  E-value=1.7e-21  Score=188.05  Aligned_cols=173  Identities=10%  Similarity=0.105  Sum_probs=142.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ...+..+++|+.+++++|++++ +.++||+|+|+|+++++.++ +.+|+.++. ..+|..+.+...++..|++++.+|.+
T Consensus        29 ~~~~~~~~~~~~la~~~g~~~~-~~~~~~~~~t~al~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  106 (356)
T cd06451          29 EFLALMDEILEGLRYVFQTENG-LTFLLSGSGTGAMEAALSNL-LEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKP  106 (356)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-CEEEEecCcHHHHHHHHHHh-CCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecC
Confidence            3445689999999999999543 36899999999999999988 468998764 34454443555667789999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      . ++.++.++|++.+++.    ++++|.+++.+|  |.++|++.|.+ ++++|+++++|++|++ |..++++...++|++
T Consensus       107 ~-~~~~~~~~l~~~i~~~----~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~-g~~~~~~~~~~~d~~  180 (356)
T cd06451         107 W-GEAVSPEEIAEALEQH----DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSL-GGEPFRMDEWGVDVA  180 (356)
T ss_pred             C-CCCCCHHHHHHHHhcc----CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhc-cCccccccccCccEE
Confidence            5 4678999999988751    467888887765  99999988865 6899999999999999 999999988899999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||| |++|.|+|+|+++++..+
T Consensus       181 ~~s~~K~-l~~p~g~G~l~~~~~~~~  205 (356)
T cd06451         181 YTGSQKA-LGAPPGLGPIAFSERALE  205 (356)
T ss_pred             EecCchh-ccCCCCcceeEECHHHHH
Confidence            9999999 888999999999887543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.87  E-value=4.5e-21  Score=186.44  Aligned_cols=172  Identities=10%  Similarity=0.037  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..++++|+.+++++|++++...|+||+|+|+|++.++.++.+ +|+. ++....+....+...++..|++++.+|.++ +
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~-~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~-~  114 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP-RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE-D  114 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC-CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC-C
Confidence            478999999999999975434688999999999999999854 5665 444433222223456677899999999875 4


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                      +.++.+++++.++++   .++++|.+++.+|  |.++|++.|.+ +|++|+++++|++|++ |..++|+.++++|++++|
T Consensus       115 ~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~-g~~~~~~~~~~~d~~v~s  190 (368)
T PRK13479        115 EPPDAAEVEAALAAD---PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSF-GAIPIDIAELGIDALISS  190 (368)
T ss_pred             CCCCHHHHHHHHHhC---CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEccccc-CCccccccccCceEEEec
Confidence            568999999988642   2467888888875  99999987765 6999999999999999 999999999999999999


Q ss_pred             cccCCCCCCCceEEEEEeCCCcc
Q 035915          312 LDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       312 ~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +||| +++|.|+|++|++++..+
T Consensus       191 ~~K~-l~g~~G~G~l~~~~~~~~  212 (368)
T PRK13479        191 ANKC-IEGVPGFGFVIARRSELE  212 (368)
T ss_pred             Cccc-cccCCCceEEEECHHHHH
Confidence            9999 655889999999987654

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.85  E-value=7e-21  Score=192.49  Aligned_cols=173  Identities=12%  Similarity=-0.055  Sum_probs=131.7

Q ss_pred             ChhhhhhHHHH-HHHHHHHHHcCCCCCCCeEEEe---CCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH--HHHHHHHc-
Q 035915          149 FPGSFISIPEI-QARNKVLKHCGLPDDEYLVLFT---PNYRDAMMLVGESYPFFRGNFYM-TIIGEELD--YVREFASF-  220 (344)
Q Consensus       149 ~~g~~as~~le-~AR~~IA~~Lga~p~ey~VVFT---snaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~--~ir~la~~-  220 (344)
                      +.|.+....++ .+|++++++||++++  ++.||   +++|+|+++++.++ +++||+|+ +..+|+..  .+..+++. 
T Consensus        72 ~~g~~~~~~iE~~ar~~~a~lf~a~~~--~~~~~~~~~sgt~an~~v~~al-~~~gd~Ii~~~~ehg~~l~~~~~l~~~~  148 (452)
T PTZ00094         72 YGGNEVVDKIENLCQKRALEAFGLDPE--EWGVNVQPYSGSPANFAVYTAL-LQPHDRIMGLDLPSGGHLTHGFYTAKKK  148 (452)
T ss_pred             cccchHHHHHHHHHHHHHHHHhCCCcc--cceeecCCCchHHHHHHHHHHh-cCCCCEEEecccccCCcccccccccccc
Confidence            46677777787 499999999999866  58888   89999999999998 78899865 67788733  22222111 


Q ss_pred             -----CCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHHH-HHhCCcEEEecccccCc
Q 035915          221 -----KESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDATALVV  293 (344)
Q Consensus       221 -----~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~  293 (344)
                           .++++...+.+. +|.++.++|++.++..    +++++.+. .+ +|.++|++.|++ +|++|++++||++|++ 
T Consensus       149 ~~~~~~~~~~~~~~~~~-~g~id~~~L~~~l~~~----~~~lvi~~-~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~-  221 (452)
T PTZ00094        149 VSATSIYFESLPYQVNE-KGLIDYDKLEELAKAF----RPKLIIAG-ASAYPRDIDYKRFREICDSVGAYLMADIAHTS-  221 (452)
T ss_pred             cccceeeeeeeecccCC-CCCcCHHHHHHHHHHh----CCCEEEEe-CCCCCCccCHHHHHHHHHHcCCEEEEeccchh-
Confidence                 123444555665 4789999999998642    24566654 34 499999998875 6999999999999999 


Q ss_pred             CCccCCCCC---CCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          294 GEDRLNLAL---HRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       294 G~~~LDLs~---l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      |+.+.|+..   .++||+++|+||| |+||+| |+|+++++..
T Consensus       222 G~i~~~~~~~~~~~~D~l~~S~hK~-l~GP~G-g~l~~~~~~~  262 (452)
T PTZ00094        222 GLVAAGVLPSPFPYADVVTTTTHKS-LRGPRS-GLIFYRKKVK  262 (452)
T ss_pred             ccccCCCCCCCCCCCcEEEcCCccC-CCCCCc-eEEEEecccc
Confidence            999887643   3699999999999 766998 8888887653

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.85  E-value=2.2e-20  Score=184.54  Aligned_cols=175  Identities=15%  Similarity=0.124  Sum_probs=141.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      +......++++|+.+|+++|++    .++||+|+|+|+++++.++ +.+|+.++ +..+|....  ..++..|++++.+|
T Consensus        58 ~~~~~~~~~~l~~~lA~~~g~~----~~~~~~g~t~a~~~al~~l-~~~gd~Vlv~~~~h~s~~--~~~~~~G~~~~~v~  130 (387)
T PRK09331         58 DQIKKPPIADFHEDLAEFLGMD----EARVTHGAREGKFAVMHSL-CKKGDYVVLDGLAHYTSY--VAAERAGLNVREVP  130 (387)
T ss_pred             ccccChHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHh-cCCCCEEEECCCchHHHH--HHHHHcCCEEEEEe
Confidence            3344556899999999999994    3789999999999999888 57899865 455555332  22456799999999


Q ss_pred             C--CCCCCccCHHHHHHHhhhcC--CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC
Q 035915          230 E--AWLDLRIKGSQLSQYFRRKC--KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       230 ~--~~~~g~i~~~~L~~~l~~~~--~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      .  ++ ++.++.+++++.+++..  ...++++|++++.+|  |.+.|++.|.+ +|++|+++++|++|++ |..++++..
T Consensus       131 ~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~-g~~~~~~~~  208 (387)
T PRK09331        131 KTGYP-EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTV-GRMPVDGKK  208 (387)
T ss_pred             CccCc-CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCccc-CCcCCCHHH
Confidence            8  44 46789999999886420  012578999988775  99999988865 6999999999999999 999999999


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|++++|+||| +++|.|+|+++++++..+.
T Consensus       209 ~g~D~~~~s~~K~-l~~~~~~G~l~~~~~~i~~  240 (387)
T PRK09331        209 LGADFIVGSGHKS-MAASAPSGVLATTEEYADK  240 (387)
T ss_pred             cCCCEEEeeCccc-ccCCCCEEEEEECHHHHhh
Confidence            9999999999999 8778899999998876543

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.84  E-value=5.9e-20  Score=175.85  Aligned_cols=173  Identities=12%  Similarity=0.038  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+++.|+.+++++|++++...|+||+|+|++++.++.++. .+|+. ++....+....+..+++..|.+++.++.++ +
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~-~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE-Y  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC-C
Confidence            67899999999999998653368899999999999999874 34555 443332221123455667899999999865 3


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                      ..++.+++++.++.+   .+++++++++.+|  |+++|++.|.+ ++++|+++++|++|++ |..++++..+++|++++|
T Consensus       109 ~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~-g~~~~~~~~~~~d~~~~s  184 (355)
T TIGR03301       109 EPPDLNRIEEALAAD---PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSF-GAIPIDIEELDVDALIAS  184 (355)
T ss_pred             CCCCHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEecccc-CCcccchhhcCccEEEec
Confidence            578999999988642   2466788777665  99999987765 6899999999999999 999999999999999999


Q ss_pred             cccCCCCCCCceEEEEEeCCCccc
Q 035915          312 LDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       312 ~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +||| +++|.|+|+++++++..+.
T Consensus       185 ~~K~-l~~~~G~g~~~~~~~~~~~  207 (355)
T TIGR03301       185 ANKC-LEGVPGFGFVIARRDLLEA  207 (355)
T ss_pred             CCcc-cccCCceeEEEECHHHHHH
Confidence            9999 6668899999999876543

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.83  E-value=3.4e-20  Score=182.64  Aligned_cols=165  Identities=10%  Similarity=0.009  Sum_probs=123.0

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEe-CCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHc--CCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFT-PNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASF--KESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFT-snaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~--~G~kV~~  227 (344)
                      +....+.++++|+.++++||++ ++|+|+|| +|+|.|++.++.++...++. +++.-++.. .+...+..  .+.++.+
T Consensus        36 ~~~f~~~~~~~r~~l~~l~~~~-~~~~v~f~~gs~T~a~~~~~~~l~~~~~l-~i~~G~~~~-~~~~~a~~~~~~~~~~~  112 (361)
T TIGR01366        36 QAPVKNLVGRVREGLAELFSLP-DGYEVILGNGGATAFWDAATFGLIEKKSL-HLSFGEFSS-KFAKAVKLAPWLGEPII  112 (361)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCC-CCceEEEECCchhHHHHHHHHhccccccc-EEecCHHHH-HHHHHHHhhhccCCceE
Confidence            3455678899999999999995 35689997 66999999999988433322 233322222 23333332  1226777


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      ++.++ +..++.     .+.     .++++|+++|++|  |+++|+++|  +|++|++++|||+|++ |+.++|+++  +
T Consensus       113 ~~~~~-~~~~~~-----~~~-----~~~~lV~~~h~et~tG~~~pi~~I--~~~~g~~~iVDavqs~-g~~~idv~~--~  176 (361)
T TIGR01366       113 VTADP-GSAPEP-----QAD-----PGVDVIAWAHNETSTGVAVPVRRP--EGSDDALVVIDATSGA-GGLPVDIAE--T  176 (361)
T ss_pred             EecCC-CCCCCC-----ccC-----CCCCEEEEcccCCccceecccccc--cccCCCeEEEEcCccc-cCCCCCHHH--C
Confidence            77665 233332     122     2589999999996  999999887  4789999999999999 999999995  8


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ||+++|+||| ||.|.|++++++++++++.
T Consensus       177 D~~~~s~~K~-lg~~~Gl~~~~~s~~~~~~  205 (361)
T TIGR01366       177 DVYYFAPQKN-FASDGGLWLAIMSPAALER  205 (361)
T ss_pred             CEEEEEchhh-cCCCCceEEEEECHHHHhh
Confidence            9999999999 8988899999999977654

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.82  E-value=1e-19  Score=198.82  Aligned_cols=168  Identities=14%  Similarity=0.107  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHH----HHHHHHHhhCCCCCCC----e-EEEcCCcCHHHHHHHHHcCCcEEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYR----DAMMLVGESYPFFRGN----F-YMTIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaT----eAlnlva~sl~~~~Gd----~-ivS~~eH~~~~ir~la~~~G~kV~  226 (344)
                      +.++++|+.+++++|+  +  .|+||+|+|    +++|+++.+|.-.+|+    + +++..+|+.|.. . +...|++|+
T Consensus       568 ~~~~~~r~~la~i~g~--~--~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a-~-a~~~G~~vv  641 (993)
T PLN02414        568 EMFEDLGDLLCEITGF--D--SFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPA-S-AAMCGMKIV  641 (993)
T ss_pred             HHHHHHHHHHHHHhCC--C--eEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHH-H-HHHCCCEEE
Confidence            4679999999999999  3  699999999    9999999999433377    5 567889986532 1 123699999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC-ccCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE-DRLNLAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~-~~LDLs~  302 (344)
                      ++|.+. +|.+|.++|++++++++  .++++|++++.||  |...||++|.+ +|++|++|++||+|++ ++ ...+..+
T Consensus       642 ~v~~d~-~G~vDle~L~~~i~~~~--~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~-a~~~l~~p~~  717 (993)
T PLN02414        642 VVGTDA-KGNINIEELRKAAEAHK--DNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMN-AQVGLTSPGF  717 (993)
T ss_pred             EeccCC-CCCcCHHHHHHHHhccC--CCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHH-hccCcCCccc
Confidence            999975 68999999999997532  2589999999997  88899987764 7999999999999999 98 5566678


Q ss_pred             CCCcEEEEccccCCCCCCCc-----eEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPSK-----ITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~G-----iG~L~Vr~~~~~  334 (344)
                      +++||+++|+||| |++|.|     +|+|++++.+..
T Consensus       718 ~GaD~~~~s~HK~-f~~P~G~GGPg~G~l~~~~~L~p  753 (993)
T PLN02414        718 IGADVCHLNLHKT-FCIPHGGGGPGMGPIGVKKHLAP  753 (993)
T ss_pred             cCCCEEEecCCcc-CCcCcccCCCCeeeEEEchhhcc
Confidence            9999999999999 665654     999999986543

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.80  E-value=1.3e-18  Score=169.51  Aligned_cols=195  Identities=16%  Similarity=0.124  Sum_probs=148.7

Q ss_pred             ccchHHHHHHhh--ccCCCC-h---hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-
Q 035915          132 TQLEPSRLLDIL--TKKSSF-P---GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-  204 (344)
Q Consensus       132 v~~~~~~L~~~L--~gnss~-~---g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-  204 (344)
                      ..++.+.+..+.  ++++++ .   +......+.+.|+++|+++|+  +  +|+||+|+|+|+++++.++ +.+|+.++ 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~--~i~~~~g~t~al~~~l~~~-~~~gd~Vl~   88 (361)
T cd06452          14 TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D--EARVTPGAREGKFAVMHSL-CEKGDWVVV   88 (361)
T ss_pred             CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEE
Confidence            455666666665  344432 1   222234679999999999999  3  5999999999999999887 57899865 


Q ss_pred             EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-CCccCHHHHHHHhhhcCC--CCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          205 TIIGEELDYVREFASFKESKVILAPEAWL-DLRIKGSQLSQYFRRKCK--HTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       205 S~~eH~~~~ir~la~~~G~kV~~vp~~~~-~g~i~~~~L~~~l~~~~~--~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                      +..+|...  ...++..|++++.+|.++. +..++.++|++.+++..+  ..++++|.+++.+|  |.+.|++.|.+ ++
T Consensus        89 ~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~  166 (361)
T cd06452          89 DGLAHYTS--YVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCH  166 (361)
T ss_pred             cCCcchHH--HHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHH
Confidence            44555543  2335667999999998753 137899999988863111  02478898887765  99999987764 68


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|+++++|++|+. |..++++.++++|++++|+||+ +++|.++|+++++++..+.
T Consensus       167 ~~~~~vivD~a~~~-g~~~~~~~~~~~d~~~~s~~K~-l~~~~~~G~l~~~~~~~~~  221 (361)
T cd06452         167 EYGVPLLLNGAYTV-GRMPVSGKELGADFIVGSGHKS-MAASAPIGVLATTEEWADI  221 (361)
T ss_pred             HcCCeEEEECCccc-CCcCCCHHHcCCCEEEecCCcc-ccCCCCeEEEEECHHHHHH
Confidence            99999999999999 9988988888999999999999 7778899999998765544

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.80  E-value=2e-18  Score=167.07  Aligned_cols=165  Identities=15%  Similarity=0.020  Sum_probs=127.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---PFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ...++++|+.+++++|++++  .++||+|+|+++..++.++   .+.++++++ +..+|..  +...++..|++++.+|.
T Consensus        58 ~~~~~~~~~~la~~~g~~~~--~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~  133 (371)
T PRK13520         58 AKLEEEAVEMLGELLHLPDA--YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS--FDKAADMLGVELRRAPL  133 (371)
T ss_pred             HHHHHHHHHHHHHHhCCCCC--CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH--HHHHHHHcCceEEEecC
Confidence            34568999999999998754  5899999999988776543   334567754 5556543  55666677999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc-------CCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR-------LNL  300 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~-------LDL  300 (344)
                      ++ ++.++.++|++.++++     +.+|++.+.+|  |.+.|++.|.+ ++++|++++||++|+. +..+       +|+
T Consensus       134 ~~-~~~~d~~~l~~~i~~~-----~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~-~~~~~~~~~~~~~~  206 (371)
T PRK13520        134 DD-DYRVDVKAVEDLIDDN-----TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGG-FVIPFLDDPPNFDF  206 (371)
T ss_pred             CC-CCcCCHHHHHHHHhhC-----CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchh-HHHHhhcCCCCccc
Confidence            76 4788999999999752     55555555543  99999988865 6999999999999986 6432       555


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ...++|++++|+||| .++|.++|+++++++
T Consensus       207 ~~~~vd~~~~s~~K~-~~a~~~~G~~~~~~~  236 (371)
T PRK13520        207 SLPGVDSITIDPHKM-GLAPIPAGGILFRDE  236 (371)
T ss_pred             cCCCCceEEECCccc-cCccCCceEEEEcCH
Confidence            567899999999999 555888999998654

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.78  E-value=7.1e-19  Score=172.92  Aligned_cols=158  Identities=13%  Similarity=0.158  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCC-HHHHHHHHHhhCCCCCCCeEE----EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPN-YRDAMMLVGESYPFFRGNFYM----TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsn-aTeAlnlva~sl~~~~Gd~iv----S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.++++|+.+.++||++ ++|+|+|++| +|+|++.++.++. .+|+.++    +.++|.   |.+.|++.|+ +..+.
T Consensus        36 ~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~-~~~~~~l~i~~G~fg~r---~~~~a~~~g~-~~~~~  109 (349)
T TIGR01364        36 EAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLL-AEGKVADYIVTGAWSKK---AAKEAKKYGV-VNVVA  109 (349)
T ss_pred             HHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcC-CCCCeEEEEECCHHHHH---HHHHHHHhCC-cEEEe
Confidence            367899999999999974 4568999977 9999999999984 3566532    344433   4667888898 76665


Q ss_pred             CC----CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCC
Q 035915          230 EA----WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       230 ~~----~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .+    |. ..++.++++  ++     .++++|+++|+.|  |+.+|    ..++.++++++|||+|++ |+.++|++++
T Consensus       110 ~~~~~~~~-~~~~~~~~~--~~-----~~~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~-g~~~id~~~~  176 (349)
T TIGR01364       110 SGKEGNYT-KIPDPSTWE--IS-----EDAAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNI-LSRPIDVSKF  176 (349)
T ss_pred             ccccCCCC-CCCCHHhcC--CC-----CCCCEEEEcCCCCcccEecc----eecccCCCeEEEEccccc-cCccCCHHHc
Confidence            43    31 234544443  22     2478999999875  99987    233557999999999999 9999999975


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                        ||+++|+||+ || |.|+|+|++++++++.
T Consensus       177 --d~~~~ssqK~-lg-P~Glg~l~~s~~~~~~  204 (349)
T TIGR01364       177 --GLIYAGAQKN-IG-PAGLTVVIVRKDLLGR  204 (349)
T ss_pred             --cEEEEecccc-cC-CCceEEEEECHHHHhh
Confidence              6999999999 88 9999999999988765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=5.4e-18  Score=171.49  Aligned_cols=158  Identities=12%  Similarity=-0.029  Sum_probs=129.5

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +.....+++.++++|+++|+.    ..+||+|+|+|+++++.++ +++||+|+ +..+|.  .+.+.+.+.+.|++++++
T Consensus        60 R~~~p~~~~le~~lA~l~g~~----~av~~sSGt~Al~~al~~l-l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~v  134 (433)
T PRK08134         60 RISNPTVAVLEERVAALEGGV----GAIATASGQAALHLAIATL-MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFV  134 (433)
T ss_pred             cCcChHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEE
Confidence            344456789999999999985    2699999999999999988 88999864 677776  344455456789999998


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +.+      +.++|++++++     +|++|.+.+.+|  |.++|++.|.+ +|++|+++++|++|+. |....++ ++++
T Consensus       135 d~~------d~~~l~~~i~~-----~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~-~~~~~pl-~~Ga  201 (433)
T PRK08134        135 KPG------DIDGWRAAIRP-----NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTT-PYLLRPF-EHGA  201 (433)
T ss_pred             CCC------CHHHHHHhcCC-----CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hcCC
Confidence            864      56789988875     478999988887  99999988865 6999999999999999 8887666 6899


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEe
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      |++++|+||| +|+| |  +|.+++.
T Consensus       202 D~vv~S~tK~-l~g~-g~~~gG~v~~  225 (433)
T PRK08134        202 DLVYHSATKF-LGGH-GTAIGGVLVD  225 (433)
T ss_pred             CEEEeccccc-cCCC-CCceEEEEEe
Confidence            9999999999 8845 6  7878775

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.77  E-value=3.5e-19  Score=175.63  Aligned_cols=161  Identities=12%  Similarity=0.126  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHHHHHHHhhCCCCCCCeE---E-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTP-NYRDAMMLVGESYPFFRGNFY---M-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTs-naTeAlnlva~sl~~~~Gd~i---v-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ..+.++++|+.++++||++ ++|+|+|++ ++|.|+..+..++ +.+|+.+   + +.++|.   |.+.+++.|.. ..+
T Consensus        46 f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl-~~~g~~~l~i~~G~fg~r---~~~~a~~~g~~-~~~  119 (360)
T PRK05355         46 FEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNL-LGGGKKADYVDTGSWSKK---AIKEAKKYGEV-NVA  119 (360)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhc-CCCCCeEEEEECCHHHHH---HHHHHHHhCCc-eEE
Confidence            3467899999999999983 456788885 5555676666665 3455552   2 445544   45667777865 555


Q ss_pred             eCCCCCCccCHHHHHH-HhhhcCCCCCeeEEEEeCccc--cccc-cHHHHHHHHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQ-YFRRKCKHTPKGLFSYPADIN--GTRY-SMHWISEAHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~-~l~~~~~~~~t~LVa~~avSN--G~i~-Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ..++..+..+..++.+ .+++     ++++|+++|+.|  |+++ ||+.|     +|++++|||+|++ |+.++|++++ 
T Consensus       120 ~~~~~~g~~~~~~~~~~~l~~-----~~~~V~~th~eTstGv~~~~i~~i-----~g~l~vVDavss~-g~~~idv~~~-  187 (360)
T PRK05355        120 ASSEDDGFTYIPPLDEWQLSD-----DAAYVHYTSNETIDGTEFHELPDT-----GDVPLVADMSSDI-LSRPIDVSKF-  187 (360)
T ss_pred             ecccccCCCCCCChhhccCCC-----CCCEEEEccCCCcceEecCccccc-----CCCcEEEEcCccc-cCccCCHHHc-
Confidence            5443124444444544 5543     368999999875  9998 77655     7999999999999 9999999976 


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                       ||+++|+||+ || |.|+|+||+++++++.
T Consensus       188 -d~~~~ssqK~-lg-P~Glg~l~~s~~~l~~  215 (360)
T PRK05355        188 -GLIYAGAQKN-IG-PAGLTIVIVREDLLGR  215 (360)
T ss_pred             -cEEEEecccc-cc-CCceEEEEECHHHHhh
Confidence             6999999999 88 9999999999988765

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.77  E-value=2.6e-17  Score=139.74  Aligned_cols=160  Identities=14%  Similarity=0.062  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ++++|+.+++++|++.+  .++|++|+|+|+.+++.++. .+++.+ +....|+...+ ..+...|+++..++.+.. +.
T Consensus         2 ~~~~~~~l~~~~~~~~~--~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~-~~   76 (170)
T cd01494           2 LEELEEKLARLLQPGND--KAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYW-VAAELAGAKPVPVPVDDA-GY   76 (170)
T ss_pred             HHHHHHHHHHHcCCCCC--cEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehh-hHHHhcCCEEEEeccCCC-Cc
Confidence            47899999999985444  69999999999999999984 457774 45556653222 345667999999887643 22


Q ss_pred             cCH--HHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccC---CCCCCCCcEE
Q 035915          237 IKG--SQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL---NLALHRPDFV  308 (344)
Q Consensus       237 i~~--~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L---DLs~l~~DFv  308 (344)
                      ...  +++++...    ..+++++.+++.+|  |..+|++.|.+ ++++|+++++|++|.. +....   +....++|++
T Consensus        77 ~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~-~~~~~~~~~~~~~~~d~~  151 (170)
T cd01494          77 GGLDVAILEELKA----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG-GASPAPGVLIPEGGADVV  151 (170)
T ss_pred             cchhhhhhhhccc----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEeccccc-ccccccccccccccCCEE
Confidence            222  23333222    23578888887775  99999977765 6899999999999999 87776   6777889999


Q ss_pred             EEccccCCCCCCCceEEEEEe
Q 035915          309 LCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      ++|+||| ||+ .|+|+|++|
T Consensus       152 ~~s~~K~-~~~-~~~G~l~~~  170 (170)
T cd01494         152 TFSLHKN-LGG-EGGGVVIVK  170 (170)
T ss_pred             EEEcccc-cCC-CceEEEEeC
Confidence            9999999 886 599999986

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.76  E-value=4.5e-18  Score=163.10  Aligned_cols=172  Identities=17%  Similarity=0.076  Sum_probs=127.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--CC---------CC--CeEE-EcCCcCHHHHHHHH
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--FF---------RG--NFYM-TIIGEELDYVREFA  218 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~~---------~G--d~iv-S~~eH~~~~ir~la  218 (344)
                      ...+..+++++.+++++|++..+.+++||+|+|+|+++++.++.  +.         ++  ..++ +..+|..  +...+
T Consensus        35 ~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~--~~~~~  112 (345)
T cd06450          35 AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS--VEKAA  112 (345)
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH--HHHHH
Confidence            44556788999999999996223379999999999998877652  11         22  2444 5556653  22333


Q ss_pred             HcCCcEEEEEeCCCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcC
Q 035915          219 SFKESKVILAPEAWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVG  294 (344)
Q Consensus       219 ~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G  294 (344)
                      +..|.+++.+|.+. ++.++.++|++.+++.. ...+++++.+++.+|  |.+.|++.|.+ ++++|+++|+|++|+. +
T Consensus       113 ~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~-~  190 (345)
T cd06450         113 AYLDVKVRLVPVDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG-F  190 (345)
T ss_pred             HHHhcCeEEeeeCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhH-H
Confidence            44588999999875 46889999999986510 111367777777665  99999988865 6999999999999999 8


Q ss_pred             CccCCCCC------CCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          295 EDRLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       295 ~~~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      ..+++...      .++|++++|+||| +++|.|+|+++++
T Consensus       191 ~~~~~~~~~~~~~~~~~d~~~~s~~K~-l~~p~g~g~~~~~  230 (345)
T cd06450         191 LLPFPEPRHLDFGIERVDSISVDPHKY-GLVPLGCSAVLVR  230 (345)
T ss_pred             HhhChhhHHHhcCccccCEEEEchhHh-hCCCcchHHHHHH
Confidence            87665332      3799999999999 7779999998776

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.75  E-value=6.4e-17  Score=156.92  Aligned_cols=165  Identities=13%  Similarity=0.042  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---C--CCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---F--FRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~--~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ....+++|+.+|+++|++++  .+++++|+|+++.+++.++.   +  .+|+.++ +..+|.  .+...++..|++++.+
T Consensus        58 ~~~~~~~~~~la~~~g~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~--~~~~~~~~~G~~~~~v  133 (373)
T TIGR03812        58 KKIEEEVVGSLGNLLHLPDA--YGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHF--SFEKAAEMLGLELRYA  133 (373)
T ss_pred             HHHHHHHHHHHHHHhCCCCC--CeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchH--HHHHHHHHcCCeEEEE
Confidence            34568999999999999755  58889999999877655431   1  3567765 444543  3556677789999999


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHHH-HHhCCcEEEecccccCcCC----------c
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDATALVVGE----------D  296 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~----------~  296 (344)
                      |.++ ++.++.++|++.+.++    ...++.+...+ +|.+.|++.|.+ +|++|++++||++|+. +.          .
T Consensus       134 ~~~~-~~~~d~~~l~~~l~~~----~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~-~~~~~~~~~~~~~  207 (373)
T TIGR03812       134 PLDE-DYTVDVKDVEDLIDDN----TIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGG-FVIPFLKKGYNPP  207 (373)
T ss_pred             eeCC-CCCcCHHHHHHHHhhC----cEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchh-HHHHHHhcCCCCC
Confidence            9875 5778999999988753    12455554333 399999988865 6899999999999985 43          2


Q ss_pred             cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          297 RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       297 ~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ++|+...++|++++|+||| ..+|.++|++++++
T Consensus       208 ~~d~~~~~~d~~~~s~~K~-~~~~~~~G~~~~~~  240 (373)
T TIGR03812       208 PFDFSLPGVQSITIDPHKM-GLSPIPAGGILFRS  240 (373)
T ss_pred             CccccCCCCCEEEECcccc-CCCcCCceEEEEeC
Confidence            5677666899999999998 55588888777643

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.73  E-value=3.4e-16  Score=153.76  Aligned_cols=171  Identities=12%  Similarity=0.075  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC-C
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW-L  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~-~  233 (344)
                      ..+.+.|+.+|+++|+++    ++|++|++++++.++.++ +.+|+.+++ ..+|... + ..++..|++++.+|.+. .
T Consensus        51 ~~~~~~~e~lA~~~g~~~----~~i~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~h~s~-~-~~~~~~g~~~~~~~~~~~~  123 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDE----ARVTHGAREGKFAVMHAL-CKEGDWVVLDGLAHYTS-Y-VAAERAGLNVKEVPHTGHP  123 (370)
T ss_pred             hHHHHHHHHHHHHhCCCc----eEEECChHHHHHHHHHHh-hCCCCEEEECCcccHHH-H-HHHHHcCCEEEEEecCCcc
Confidence            357888999999999962    567899999999999988 478898765 4555543 2 33566799999998752 2


Q ss_pred             CCccCHHHHHHHhhhcCC--CCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          234 DLRIKGSQLSQYFRRKCK--HTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~--~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      ++.++.++|++.+++...  ..++++|.+++.+|  |.+.|++.|.+ ++++|+++++|++|+. |..++++..+++|++
T Consensus       124 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~-g~~~~~~~~~~~di~  202 (370)
T TIGR02539       124 EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTV-GRMPVSAKEIGADFI  202 (370)
T ss_pred             cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECcccc-CCcCCCHHHcCCCEE
Confidence            356899999998863110  01467888887775  99999987765 6899999999999999 988888877789999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCccc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +.|+||| ||.+.++|+++++++..+.
T Consensus       203 v~s~sK~-~~~~g~~G~l~~~~~~i~~  228 (370)
T TIGR02539       203 VGSGHKS-MAASGPCGVLGMSEEWEDI  228 (370)
T ss_pred             EeeCccc-ccCCCCEEEEEECHHHHhh
Confidence            9999999 8866668999998876654

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.73  E-value=1.4e-16  Score=164.72  Aligned_cols=187  Identities=15%  Similarity=0.021  Sum_probs=130.1

Q ss_pred             HHHhhccC-CC-ChhhhhhHHHHHHHHHHHHHcCCC-----------CCCCeEEEeCCHHHHHHH---HHhhCCCC----
Q 035915          139 LLDILTKK-SS-FPGSFISIPEIQARNKVLKHCGLP-----------DDEYLVLFTPNYRDAMML---VGESYPFF----  198 (344)
Q Consensus       139 L~~~L~gn-ss-~~g~~as~~le~AR~~IA~~Lga~-----------p~ey~VVFTsnaTeAlnl---va~sl~~~----  198 (344)
                      +...+..| -. ..+..++....++-+.++++++..           ++...-+||+|+|+|+-+   +++...+.    
T Consensus       110 l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~  189 (522)
T TIGR03799       110 LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGD  189 (522)
T ss_pred             HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccc
Confidence            55555555 22 233445556678888888888632           222346999999999665   23322110    


Q ss_pred             ------------------CCCe-EEEcCCcCHHHHHHHHHcCCc---EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCee
Q 035915          199 ------------------RGNF-YMTIIGEELDYVREFASFKES---KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKG  256 (344)
Q Consensus       199 ------------------~Gd~-ivS~~eH~~~~ir~la~~~G~---kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~  256 (344)
                                        ++.. ++|..+|.+  +...++..|.   +++.+|.+. +++++.++|++.+.... ...++
T Consensus       190 ~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S--~~kaa~~lglg~~~v~~vp~d~-~g~~d~~~L~~~i~~~~-~~g~~  265 (522)
T TIGR03799       190 FKGVAREGLFAALKHYGYDGLAILVSERGHYS--LGKAADVLGIGRDNLIAIKTDA-NNRIDVDALRDKCAELA-EQNIK  265 (522)
T ss_pred             ccccccccchhhhhhccCCceEEEECCCchHH--HHHHHHHcCCCcccEEEEEeCC-CCcCCHHHHHHHHHHHH-HCCCC
Confidence                              1123 456777774  3344555566   788999986 58999999999886311 12345


Q ss_pred             EEEEeCcc--c--cccccHHHHHH-HHhCCcEEEecccccCcCCccCC-----CCCC-CCcEEEEccccCCCCCCCceEE
Q 035915          257 LFSYPADI--N--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN-----LALH-RPDFVLCNLDNTQNAQPSKITC  325 (344)
Q Consensus       257 LVa~~avS--N--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD-----Ls~l-~~DFvv~S~HK~l~G~P~GiG~  325 (344)
                      +|++.++.  |  |.+.||+.|+. |+++|+++||||||+. +....+     +..+ ++|++++|+||| +++|.|+|+
T Consensus       266 ~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg-~~~~~~~~r~~l~gle~aDSit~d~HK~-l~~P~g~G~  343 (522)
T TIGR03799       266 PLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGG-ATLLSNTYRHLLKGIERADSVTIDAHKQ-LYVPMGAGM  343 (522)
T ss_pred             cEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhh-HHHhCHHHHHHhcCchhCCEEEEChhhc-CCcCcccEE
Confidence            66665443  2  99999988875 6999999999999998 877666     5654 899999999999 666999999


Q ss_pred             EEEeCC
Q 035915          326 LLIRKK  331 (344)
Q Consensus       326 L~Vr~~  331 (344)
                      ||+|+.
T Consensus       344 llvr~~  349 (522)
T TIGR03799       344 VLFKDP  349 (522)
T ss_pred             EEEeCH
Confidence            999874

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.72  E-value=1.3e-16  Score=157.19  Aligned_cols=186  Identities=15%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN  201 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd  201 (344)
                      .|.++++.+.+++..+.+. .      +.  .....++++++.+++++|++    .++||+|+|+|+++++.++ +.+||
T Consensus        20 ~g~s~~~~~v~~a~~~~~~-~------~~--~~~~~~~~~~~~~a~~~g~~----~~~~~~g~t~al~~al~al-~~~Gd   85 (363)
T TIGR01437        20 LGVSTVSDEVADAQKRGAQ-N------YF--EIKELVNKTGEYIANLLGVE----DAVIVSSASAGIAQSVAAV-ITRGN   85 (363)
T ss_pred             CCCCCCCHHHHHHHHHHHh-c------CC--CHHHHHHHHHHHHHHhhCCC----eEEEEcCHHHHHHHHHHHH-hcCCC
Confidence            6777555444444444332 2      11  13356799999999999984    4899999999999999887 56676


Q ss_pred             ---------------eEEEcCCcCHH---HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEE-EeC
Q 035915          202 ---------------FYMTIIGEELD---YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFS-YPA  262 (344)
Q Consensus       202 ---------------~ivS~~eH~~~---~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa-~~a  262 (344)
                                     +++....|..+   .+.......|+++++++.+   ..++.++++++++++     |+++. ++.
T Consensus        86 ~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~~le~ai~~~-----t~ai~~v~~  157 (363)
T TIGR01437        86 RYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAEQLEAAITEK-----TAAILYIKS  157 (363)
T ss_pred             cchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHHHHHHhcChh-----ceEEEEEec
Confidence                           66555444422   2334445579999888864   358999999999863     55444 332


Q ss_pred             cc--ccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          263 DI--NGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       263 vS--NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .+  +|.++|++.|.+ ||++|+++++|++|.. ...  .+..+++|++++|+||+ +++|+ .|+|+.+++..+
T Consensus       158 ~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~-~~~--~~~~~g~D~~~~S~~K~-l~gp~-~G~l~~~~~~i~  227 (363)
T TIGR01437       158 HHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEE-DLQ--KYYRLGADLVIYSGAKA-IEGPT-SGLVLGKKKYIE  227 (363)
T ss_pred             CCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCC-chH--HHHHcCCCEEEEeCCcc-cCCCc-eEEEEEcHHHHH
Confidence            22  399999988865 6999999999999985 211  12245799999999999 67798 899888765544

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.70  E-value=3.7e-16  Score=153.11  Aligned_cols=171  Identities=13%  Similarity=0.018  Sum_probs=129.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCC--CCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF--RGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~--~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      .....++.++.+++++|++++  +++|+.|+|++.+.++.+..+.  +|++|+ +...|+  ...+..+.++.|++++.+
T Consensus        62 ~~~~~~~~~~~la~~~g~~~~--~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v  139 (398)
T cd00613          62 RLQALFELQTMLCELTGMDVA--NASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEV  139 (398)
T ss_pred             HHHHHHHHHHHHHHHHCCCcc--ceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEe
Confidence            335679999999999999765  5888887776655544433333  488865 555666  334555445567899999


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccH-HHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSM-HWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl-~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      |.+. ++.++.++|++.+++     ++++|.+.+.++ |.+.|+ +.|.+ |+++|+++++|++|+. |..+.+...+++
T Consensus       140 ~~~~-~~~~d~~~l~~~i~~-----~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~-~~~~~~~~~~~~  212 (398)
T cd00613         140 PSDE-GGTVDLEALKEEVSE-----EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLN-LTGLKPPGEYGA  212 (398)
T ss_pred             ccCC-CCCcCHHHHHHhcCC-----CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEecccc-ccCCCChHHcCC
Confidence            8864 457889999988865     478888877654 999996 88865 6999999999999998 877777778899


Q ss_pred             cEEEEccccCCCCCC-----CceEEEEEeCCCccc
Q 035915          306 DFVLCNLDNTQNAQP-----SKITCLLIRKKSFDT  335 (344)
Q Consensus       306 DFvv~S~HK~l~G~P-----~GiG~L~Vr~~~~~~  335 (344)
                      |++++|+||| + .|     .|+|+|++++++.+.
T Consensus       213 d~~~~s~~K~-~-~p~g~Ggp~~g~l~~~~~~~~~  245 (398)
T cd00613         213 DIVVGNLQKT-G-VPHGGGGPGAGFFAVKKELVRF  245 (398)
T ss_pred             CEEEeecccc-C-CCCCCCCCceeEEEEhhhhHhh
Confidence            9999999999 6 34     368999998876553

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=1.3e-15  Score=151.91  Aligned_cols=196  Identities=13%  Similarity=0.159  Sum_probs=156.0

Q ss_pred             ccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC
Q 035915          132 TQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE  210 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~  210 (344)
                      +....+-++.+..-............+.++++.+..+|+++. .+-+++++++|.|+.....++ ..+||+++ ...+-=
T Consensus        14 ~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~-~~~~ll~gsGt~amEAav~sl-~~pgdkVLv~~nG~F   91 (383)
T COG0075          14 VPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTEN-GDVVLLSGSGTLAMEAAVASL-VEPGDKVLVVVNGKF   91 (383)
T ss_pred             CCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCC-CcEEEEcCCcHHHHHHHHHhc-cCCCCeEEEEeCChH
Confidence            444444455543333333334555678999999999999873 336777899999999988887 46899854 333311


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccHHHHHH-HHhCCcEEEec
Q 035915          211 LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSMHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       211 ~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl~~Ia~-ar~~g~~vlvD  287 (344)
                      ..-|.+.+++.|.+|+.+...| +..++++++++.++.+   ++.++|++.|+-  +|+++|++.|++ ++++|++++||
T Consensus        92 G~R~~~ia~~~g~~v~~~~~~w-g~~v~p~~v~~~L~~~---~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVD  167 (383)
T COG0075          92 GERFAEIAERYGAEVVVLEVEW-GEAVDPEEVEEALDKD---PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVD  167 (383)
T ss_pred             HHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcC---CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEE
Confidence            3457788888999999998888 4678999999999842   357799999875  499999999976 59999999999


Q ss_pred             ccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          288 ATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |+.++ |-.++++.+|++|+++.+.+|. +++|.|+|++.++++..+.
T Consensus       168 aVsS~-Gg~~~~vd~wgiDv~itgSQK~-l~~PPGla~v~~S~~a~e~  213 (383)
T COG0075         168 AVSSL-GGEPLKVDEWGIDVAITGSQKA-LGAPPGLAFVAVSERALEA  213 (383)
T ss_pred             ecccC-CCcccchhhcCccEEEecCchh-ccCCCccceeEECHHHHHH
Confidence            99999 9999999999999999999999 8889999999999988766

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.65  E-value=2.7e-15  Score=152.91  Aligned_cols=163  Identities=12%  Similarity=0.072  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC----HHHHHHHHHcCCcEEEEEe
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE----LDYVREFASFKESKVILAP  229 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~----~~~ir~la~~~G~kV~~vp  229 (344)
                      ...++.+++.+++++|+..   .+ +++|++.|+++++..  +.+|++++ +..+|.    ...+.+..+..|++++.++
T Consensus       121 g~r~~~le~~lA~l~gae~---al-vv~sg~aAi~l~l~~--l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~  194 (454)
T TIGR00474       121 GSRYSHVEGLLCELTGAED---AL-VVNNNAAAVLLALNT--LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVG  194 (454)
T ss_pred             chHHHHHHHHHHHHhCCCc---EE-EECCHHHHHHHHHHH--hCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeC
Confidence            3467999999999999953   34 566777899988865  46899865 554542    2233344566799999887


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc----c--ccccHHHHH-HHHhCCcEEEecccc---------cCc
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN----G--TRYSMHWIS-EAHRNSWHVLLDATA---------LVV  293 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN----G--~i~Pl~~Ia-~ar~~g~~vlvDAaQ---------a~~  293 (344)
                      .+.   ..+.+++++++++     +|+++.+.+.+|    |  .+.|++.|. .+|++|+++++|++.         .+ 
T Consensus       195 ~~~---~~~l~dle~aI~~-----~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl-  265 (454)
T TIGR00474       195 TTN---RTHLKDYEDAITE-----NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGL-  265 (454)
T ss_pred             CCC---CCCHHHHHHhcCc-----CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccC-
Confidence            642   3467889888875     478888888886    5  589998775 479999999999872         23 


Q ss_pred             CCccC--CCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          294 GEDRL--NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~~L--DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++.|.  +..++++|+++||+||| +||| ..|+++++++..+
T Consensus       266 ~~~p~~~~~~~~GaDiv~fSg~K~-LgGp-~~G~i~g~~~~i~  306 (454)
T TIGR00474       266 PDEPTVQEVIAAGVDLVTFSGDKL-LGGP-QAGIIVGKKELIE  306 (454)
T ss_pred             CCCcccccHhHcCCCEEEecCccc-cCCC-eEEEEEECHHHHH
Confidence            33333  44568999999999999 8889 5899999987654

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.65  E-value=2e-15  Score=151.51  Aligned_cols=169  Identities=10%  Similarity=-0.016  Sum_probs=132.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcC--HHHHHHHHHcCCcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEE--LDYVREFASFKESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~--~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.+.+.++.+++++|++++  +++||+|+|+++..+..++.+.+|+++ ++..+|+  ...++.++...|++++.+|.
T Consensus       110 ~~~~~~e~~~~la~l~g~~~~--~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~  187 (447)
T PRK00451        110 TLQAIFEYQTMICELTGMDVA--NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY  187 (447)
T ss_pred             HHHHHHHHHHHHHHHhCCCcc--eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC
Confidence            444567788899999999865  699999999999888877765678885 4666776  33556667777999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEe--cccccCcCCccCCCCCCCCc
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLL--DATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlv--DAaQa~~G~~~LDLs~l~~D  306 (344)
                      ++ + .++.++|++++++     ++++|.+++.++ |.+.|++.|.+ +|++|+++++  |+. ++ |.... ..++++|
T Consensus       188 ~~-~-~~d~~~l~~~i~~-----~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~-g~~~~-~~~~~~D  257 (447)
T PRK00451        188 ED-G-VTDLEALEAAVDD-----DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SL-GLLKP-PGEYGAD  257 (447)
T ss_pred             CC-C-CCCHHHHHHhcCC-----CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-Hh-ccCCC-cccCCCC
Confidence            76 4 7899999998865     478888877653 99999988865 6999999988  755 45 65442 3568999


Q ss_pred             EEEEccccC----CCCCCCceEEEEEeCCCccc
Q 035915          307 FVLCNLDNT----QNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       307 Fvv~S~HK~----l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++++|+|||    .+||| |+|++++++++.+.
T Consensus       258 ~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~~~  289 (447)
T PRK00451        258 IVVGEGQPLGIPLSFGGP-YLGFFATRKKLVRQ  289 (447)
T ss_pred             EEEECCCcCCCCCCCCCC-CchHHHhhHHHHhh
Confidence            999999995    36668 89999998876554

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.65  E-value=1.4e-15  Score=150.87  Aligned_cols=170  Identities=14%  Similarity=-0.036  Sum_probs=122.3

Q ss_pred             hhhhhHHHHH-HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH--HHHH-HHHcCCcEE
Q 035915          151 GSFISIPEIQ-ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELD--YVRE-FASFKESKV  225 (344)
Q Consensus       151 g~~as~~le~-AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~--~ir~-la~~~G~kV  225 (344)
                      |......+++ +|+.+++++|++..  .|+|++ +|+|+++++.++ +++||+|+ +..+|...  .+.. .....|+++
T Consensus        65 ~~~~~~~~e~~~~~~la~~~g~~~~--~i~~~s-gt~al~~~l~~l-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~  140 (416)
T PRK00011         65 GCEYVDVVEQLAIDRAKELFGAEYA--NVQPHS-GSQANAAVYFAL-LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNV  140 (416)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCce--eeecCC-chHHHHHHHHHh-cCCCCEEEEeccccCCccccccccccccceeeE
Confidence            4444556665 89999999999754  476665 578999999888 78999864 56666521  1111 123346788


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc-----cCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED-----RLN  299 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-----~LD  299 (344)
                      +.++.+..++.++.++|++.+++.    +++++.+...++|...|++.|.+ ++++|+++++|++|++ |..     +.+
T Consensus       141 ~~~~~~~~~~~~d~~~l~~~i~~~----~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~-g~~~~g~~~~~  215 (416)
T PRK00011        141 VSYGVDEETGLIDYDEVEKLALEH----KPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIA-GLVAAGVHPSP  215 (416)
T ss_pred             eecCcCcccCCcCHHHHHHHHHhc----CCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchh-cccccCccCCC
Confidence            888876445678999999988642    36777776444698899988865 6999999999999988 764     445


Q ss_pred             CCCCCCcEEEEccccCCCCCCCceEEEEEe-CCCc
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSKITCLLIR-KKSF  333 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr-~~~~  333 (344)
                      +.  ++|++++|+||+ +++|.| |+++.+ ++..
T Consensus       216 ~~--~~di~~~S~~K~-l~g~~g-g~i~~~~~~~~  246 (416)
T PRK00011        216 VP--HADVVTTTTHKT-LRGPRG-GLILTNDEELA  246 (416)
T ss_pred             CC--CCcEEEecCCcC-CCCCCc-eEEEeCCHHHH
Confidence            55  689999999999 766865 555554 3443

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.64  E-value=3.5e-15  Score=151.33  Aligned_cols=162  Identities=14%  Similarity=-0.010  Sum_probs=120.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~  226 (344)
                      .++......++.++++++++|+.   +.|+|++|+ +|+.+++.++ +++||+|+ +..+|..  ..+...+.+.|+++.
T Consensus        63 Y~r~~~pt~~~le~~la~l~g~~---~~v~fsSG~-~Ai~~al~~l-l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~  137 (437)
T PRK05613         63 YSRLTNPTVEALENRIASLEGGV---HAVAFASGQ-AAETAAILNL-AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVT  137 (437)
T ss_pred             eeCccChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHh-cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEE
Confidence            33444456789999999999984   257777777 7777777776 68899865 5667762  233344566899999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      +++ +.    .+.+++++.+++     +|++|.+.+.+|  |.++||+.|.+ ||++|+++++|++|+. |.. .+.-++
T Consensus       138 ~vd-~~----~d~e~l~~~l~~-----~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~-g~~-~~p~~~  205 (437)
T PRK05613        138 FVE-NP----DDPESWQAAVQP-----NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIAT-AAL-VRPLEL  205 (437)
T ss_pred             EEC-CC----CCHHHHHHhCCc-----cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcc-ccc-cChHHh
Confidence            987 21    156788888875     366666655554  99999988865 6999999999999998 765 333357


Q ss_pred             CCcEEEEccccCCCCCC-CceEEEEEe
Q 035915          304 RPDFVLCNLDNTQNAQP-SKITCLLIR  329 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P-~GiG~L~Vr  329 (344)
                      ++|++++|+||| ++++ .++|.+++.
T Consensus       206 GaDivv~S~~K~-l~G~gd~~gG~vv~  231 (437)
T PRK05613        206 GADVVVASLTKF-YTGNGSGLGGVLID  231 (437)
T ss_pred             CCCEEEeeccce-ecCCCcceeEEEEe
Confidence            899999999999 8854 356887774

>PRK04311 selenocysteine synthase; Provisional

Probab=99.63  E-value=6.2e-15  Score=150.64  Aligned_cols=164  Identities=12%  Similarity=0.049  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC----HHHHHHHHHcCCcEEEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE----LDYVREFASFKESKVILA  228 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~----~~~ir~la~~~G~kV~~v  228 (344)
                      ....++.+++.+++++|+.    ..++++|+|.|+++++.++  .+|++++ +..+|.    ...+.+..++.|++++++
T Consensus       125 ~g~r~~~~e~~lA~l~Gae----~a~vv~sgtaAl~l~l~~l--~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v  198 (464)
T PRK04311        125 RGSRDRALAALLCALTGAE----DALVVNNNAAAVLLALNAL--AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEV  198 (464)
T ss_pred             cchHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHh--CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEE
Confidence            3456789999999999985    3677788889999988765  6889865 444443    222334456679999988


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc----c--ccccHHHHH-HHHhCCcEEEecccccCc--------
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN----G--TRYSMHWIS-EAHRNSWHVLLDATALVV--------  293 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN----G--~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~--------  293 (344)
                      +.+.   ..+.+++++++++     +|+++.+.+.+|    |  ...|++.|. .+|++|+++++|+++...        
T Consensus       199 ~~~~---~t~~~dle~aI~~-----~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl  270 (464)
T PRK04311        199 GTTN---RTHLRDYEQAINE-----NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGL  270 (464)
T ss_pred             CCCC---CCCHHHHHHhcCc-----cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccC
Confidence            7643   3467889998875     478888888876    5  568998775 479999999999954221        


Q ss_pred             CCccCCCC---CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          294 GEDRLNLA---LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~~LDLs---~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++.+ ++.   ++++|+++||+||| +||| ..|+++++++..+
T Consensus       271 ~~~p-~~~~~l~~GaDiv~fSg~K~-LgGp-~~G~i~g~~~li~  311 (464)
T PRK04311        271 PDEP-TVQELLAAGVDLVTFSGDKL-LGGP-QAGIIVGKKELIA  311 (464)
T ss_pred             CCCC-chhhHHhcCCcEEEecCccc-ccCC-ceEEEEEcHHHHH
Confidence            1223 333   37999999999999 8889 5899999987664

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.63  E-value=1.1e-14  Score=144.65  Aligned_cols=156  Identities=13%  Similarity=0.022  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..++.++++++++|++ +  .|+| ++++.|+++++. + +++||+|+ +...|.  ...++.++++.|+++++++.+  
T Consensus        48 ~~~~le~~la~l~g~~-~--~l~~-~sG~~al~~~l~-l-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~--  119 (378)
T TIGR01329        48 TRTALESLLAKLDKAD-R--AFAF-SSGMAALDVITR-L-LNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT--  119 (378)
T ss_pred             HHHHHHHHHHHHhCCC-c--EEEE-CCHHHHHHHHHH-H-hCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence            4678899999999983 2  3555 555669998776 3 58899865 455665  234566677789999998763  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                          +.+++++.+++     ++++|.+...+|  |.++|++.|.+ ||++|+++++|++|+. +.....+ .+++|++++
T Consensus       120 ----d~~~le~~i~~-----~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~-~~~~~~l-~~g~Di~v~  188 (378)
T TIGR01329       120 ----DLDKVKAALGP-----KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS-PLLCNPL-ELGADIVYH  188 (378)
T ss_pred             ----CHHHHHHhcCc-----CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc-cccCChh-hcCCcEEEE
Confidence                56788888864     478999888777  99999987764 6999999999999988 7654444 468999999


Q ss_pred             ccccCCCCCCCc--eEEEEEeCCC
Q 035915          311 NLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       311 S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      |+||| +++|.+  .|+++++++.
T Consensus       189 S~tK~-l~G~~~~~~G~v~~~~~~  211 (378)
T TIGR01329       189 SATKF-LAGHSDVMAGVLAVKGEE  211 (378)
T ss_pred             eccee-ccCCccceeEEEEeCcHH
Confidence            99999 777877  8889887654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.63  E-value=1.5e-14  Score=145.16  Aligned_cols=162  Identities=10%  Similarity=-0.002  Sum_probs=125.7

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++...-..+...++||++-|+.    ..+++++++.|++.++.++ +++||+++. ...|.  ...++.++++.|++|.+
T Consensus        57 sR~~nPt~~~le~~la~LEg~~----~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~  131 (395)
T PRK08114         57 GRRGTLTHFSLQEAMCELEGGA----GCALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTW  131 (395)
T ss_pred             cCCCChhHHHHHHHHHHHhCCC----eEEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEE
Confidence            3434344566777889988874    3566777999999988887 789999764 44454  23344556778999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC--CcEEEecccccCcCCccCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN--SWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~--g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      ++..      +.+++++++++     +|+||.+.+.+|  |.++||+.|.+ +|++  |++++||++|+. |.. ++..+
T Consensus       132 vd~~------d~~~l~~~l~~-----~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~-p~~-~~pl~  198 (395)
T PRK08114        132 FDPL------IGADIAKLIQP-----NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAA-GVL-FKALD  198 (395)
T ss_pred             ECCC------CHHHHHHhcCC-----CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcc-ccc-cCHHH
Confidence            8742      45778888875     479999998887  99999988865 6886  599999999999 977 89889


Q ss_pred             CCCcEEEEccccCCCCCCC--ceEEEEEeCC
Q 035915          303 HRPDFVLCNLDNTQNAQPS--KITCLLIRKK  331 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~--GiG~L~Vr~~  331 (344)
                      +++||++.|+||| ++||.  +.|+++.+++
T Consensus       199 ~GaDivv~S~tKy-l~Ghsdv~~G~v~~~~~  228 (395)
T PRK08114        199 FGIDISIQAGTKY-LVGHSDAMIGTAVANAR  228 (395)
T ss_pred             cCCcEEEEcCccc-ccCCCcceeEEEEcCHH
Confidence            9999999999999 77785  7787776654

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.62  E-value=5.2e-15  Score=141.24  Aligned_cols=167  Identities=11%  Similarity=0.005  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+.++++.+|+++|++ .  .+++|+|+|+|++.++.++ +++||.|+ ....|...  ...+...|+++++++.+...
T Consensus        59 g~i~~~~~~~A~~~ga~-~--~~~~~~Gst~a~~~~l~al-~~~gd~Vlv~~~~h~s~--~~~~~~~g~~~~~v~~~~~~  132 (294)
T cd00615          59 GPIKEAQELAARAFGAK-H--TFFLVNGTSSSNKAVILAV-CGPGDKILIDRNCHKSV--INGLVLSGAVPVYLKPERNP  132 (294)
T ss_pred             hHHHHHHHHHHHHhCCC-C--EEEEcCcHHHHHHHHHHHc-CCCCCEEEEeCCchHHH--HHHHHHCCCEEEEecCccCc
Confidence            46789999999999985 2  4555999999999988887 57899865 45555532  12223468888888765322


Q ss_pred             -----CccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHHH-HHhCCcEEEecccccCc----CCccCCCCCC
Q 035915          235 -----LRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDATALVV----GEDRLNLALH  303 (344)
Q Consensus       235 -----g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~----G~~~LDLs~l  303 (344)
                           +.++.++|++.+++.   .++++|.++..+ .|.++|+++|.+ +|++|+++++|++|...    +..+.+...+
T Consensus       133 ~~~~~~~i~~~~l~~~l~~~---~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         133 YYGIAGGIPPETFKKALIEH---PDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             ccCcCCCCCHHHHHHHHHhC---CCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence                 368999999998642   246777777543 399999987765 69999999999999750    2334455567


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ++|+++.|+||+ +++|++.|+|+++++.
T Consensus       210 ~~div~~S~hK~-l~g~~~~~~l~~~~~~  237 (294)
T cd00615         210 GADIVVQSTHKT-LPALTQGSMIHVKGDL  237 (294)
T ss_pred             CCcEEEEchhcc-cchHhHHHHHHhCCCc
Confidence            899999999999 7778888999888763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.61  E-value=4e-14  Score=135.93  Aligned_cols=159  Identities=9%  Similarity=-0.025  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+.+++++|++    .++||+|+|+|+++++.++.+.+|++++ ...+|+..  ...+...|++++.++.+..++
T Consensus        19 ~~~~~~~~la~~~~~~----~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~   92 (352)
T cd00616          19 KVREFEKAFAEYLGVK----YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT--ANAILLLGATPVFVDIDPDTY   92 (352)
T ss_pred             HHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH--HHHHHHcCCeEEEEecCCCcC
Confidence            5678999999999972    4899999999999999988778899865 55665532  122345699999998875456


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC-CCCCcEEEEccc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA-LHRPDFVLCNLD  313 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs-~l~~DFvv~S~H  313 (344)
                      .++.++|++.+++     ++++|.+++ .+|...|++.|.+ |+++|+++++|++|++ |....+.. ....|+.++|+|
T Consensus        93 ~~d~~~l~~~i~~-----~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~-g~~~~~~~~~~~~d~~~~S~~  165 (352)
T cd00616          93 NIDPELIEAAITP-----RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQAL-GATYKGRKVGTFGDAGAFSFH  165 (352)
T ss_pred             CcCHHHHHHhcCc-----CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCC-CCeECCEEcccCcceeEEcCC
Confidence            7889999988854     467777764 2599999987754 6899999999999999 87653311 122689999976


Q ss_pred             --cCCCCCCCceEEEEEeC
Q 035915          314 --NTQNAQPSKITCLLIRK  330 (344)
Q Consensus       314 --K~l~G~P~GiG~L~Vr~  330 (344)
                        || +++|. .|+++.++
T Consensus       166 ~~K~-~~~~~-gg~~~~~~  182 (352)
T cd00616         166 PTKN-LTTGE-GGAVVTND  182 (352)
T ss_pred             CCCC-CcccC-ceEEEECC
Confidence              99 75443 35566554

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.60  E-value=2.5e-14  Score=146.28  Aligned_cols=169  Identities=13%  Similarity=0.003  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHH--HHhhCCCCCCC----eE-EEcCCcCHHHHHHHHHcCCcEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMML--VGESYPFFRGN----FY-MTIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnl--va~sl~~~~Gd----~i-vS~~eH~~~~ir~la~~~G~kV~  226 (344)
                      ..+.+.+.++.+++++|++..  .+.-++|+++.+..  ++..+...+|+    ++ ++..+|+.+.  ..++..|++++
T Consensus       111 ~lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~--~~~~~~G~~vv  186 (481)
T PRK04366        111 ALELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNP--ASAAMAGFKVV  186 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHH--HHHHHcCCEEE
Confidence            335679999999999999622  23333444444432  23333334454    54 5677777432  23456799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-cccc-ccHHHHHH-HHhCCcEEEecccccCcCCc-cCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTR-YSMHWISE-AHRNSWHVLLDATALVVGED-RLNLAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i-~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~LDLs~  302 (344)
                      .+|.+. ++.++.++|++++++     ++++|.++.-+ +|.+ .|++.|.+ +|++|++++||++|++ +.. .++..+
T Consensus       187 ~v~~~~-~~~~D~e~L~~~i~~-----~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~-~~~g~~~~~~  259 (481)
T PRK04366        187 EIPSNE-DGLVDLEALKAAVGE-----DTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLN-AILGKARPGD  259 (481)
T ss_pred             EeecCC-CCCcCHHHHHhhccc-----CCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChh-hhcccCCccc
Confidence            999874 578999999988865     36777776544 3877 58977754 7999999999999997 633 457778


Q ss_pred             CCCcEEEEccccCCCCCCC-----ceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPS-----KITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~-----GiG~L~Vr~~~~~  334 (344)
                      +++|++++++||| ||+|.     |+|+|++|++..+
T Consensus       260 ~GaD~~~~~~hK~-l~~P~g~Ggp~~G~l~~~~~~~~  295 (481)
T PRK04366        260 MGFDVVHLNLHKT-FSTPHGGGGPGSGPVGVKEELAP  295 (481)
T ss_pred             cCCCEEEEechhh-cCCCCCCCCCCeeeeeehhhhHh
Confidence            9999999999999 76554     5679999876543

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.59  E-value=3.7e-14  Score=139.04  Aligned_cols=185  Identities=14%  Similarity=0.049  Sum_probs=126.2

Q ss_pred             cccchHHHHHHhhccCCCCh---hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-Ec
Q 035915          131 RTQLEPSRLLDILTKKSSFP---GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TI  206 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~---g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~  206 (344)
                      .+++..+.+.+...+++.+.   |.  .....+.|+.+|+++|++ +   ++.++|+++|++.+..++ +++||+++ ..
T Consensus        57 v~~~~~~~~~~~~~~~~~s~~~~G~--~~~~~~le~~ia~~~g~~-~---~ii~~~~~~a~~~~~~~l-~~~gd~vi~~~  129 (393)
T TIGR01822        57 LIQAAKDALDEHGFGMSSVRFICGT--QDIHKELEAKIAAFLGTE-D---TILYASCFDANGGLFETL-LGAEDAIISDA  129 (393)
T ss_pred             HHHHHHHHHHHhCCCCCCcCcccCC--hHHHHHHHHHHHHHhCCC-c---EEEECchHHHHHHHHHHh-CCCCCEEEEec
Confidence            56666666666434543222   22  345688999999999984 2   444478889999998888 78999965 56


Q ss_pred             CCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHHHH-HHhCCc
Q 035915          207 IGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWISE-AHRNSW  282 (344)
Q Consensus       207 ~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~  282 (344)
                      .+|+.. + ..++..+.+...++      .++.++|++.+++... ..++++|++.+++|  |.+.|++.|.+ ++++|+
T Consensus       130 ~~~~s~-~-~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~  201 (393)
T TIGR01822       130 LNHASI-I-DGVRLCKAKRYRYA------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDA  201 (393)
T ss_pred             cccHHH-H-HHHHhcCCceEEeC------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCC
Confidence            666632 1 11222233333222      2567788888864211 12578999887765  99999987765 699999


Q ss_pred             EEEecccccCcCCcc---------CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          283 HVLLDATALVVGEDR---------LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       283 ~vlvDAaQa~~G~~~---------LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++|++|+. |...         +++. .++|++++|+||+ ++++ .+|+++.+++..+
T Consensus       202 ~li~De~~~~-g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~-l~g~-r~G~~~~~~~~~~  258 (393)
T TIGR01822       202 LVMVDECHAT-GFLGPTGRGSHELCGVM-GRVDIITGTLGKA-LGGA-SGGFTTARKEVVE  258 (393)
T ss_pred             EEEEECCccc-cCcCCCCCchHHhcCCC-CCCeEEEEEChHH-hhCC-CcEEEEeCHHHHH
Confidence            9999999988 7653         2222 2689999999999 8766 4699988776544

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.59  E-value=1.4e-14  Score=142.68  Aligned_cols=168  Identities=17%  Similarity=-0.031  Sum_probs=119.2

Q ss_pred             hhhhhhHHHHH-HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH--HH-HHHHHcCCcE
Q 035915          150 PGSFISIPEIQ-ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELD--YV-REFASFKESK  224 (344)
Q Consensus       150 ~g~~as~~le~-AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~--~i-r~la~~~G~k  224 (344)
                      .|......+++ +|+.+++++|++..  .|++| |+|+|+++++.++ +++||+|+ ...+|...  .+ ...++..|.+
T Consensus        58 ~~~~~~~~l~~~~~~~~~~~~g~~~~--~v~~~-sgt~a~~~~l~~l-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~  133 (402)
T cd00378          58 GGCEYVDEIEDLAIERAKKLFGAEYA--NVQPH-SGSQANLAVYFAL-LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKL  133 (402)
T ss_pred             CCchHHHHHHHHHHHHHHHHhCCCce--eeecC-CcHHHHHHHHHHh-cCCCCEEEEecCccCcccccccccccccccee
Confidence            34444455555 78899999999743  45556 4689999999988 68999864 55555521  11 1113446887


Q ss_pred             EEEEeCCCC--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc-----
Q 035915          225 VILAPEAWL--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED-----  296 (344)
Q Consensus       225 V~~vp~~~~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-----  296 (344)
                      +..++.+..  ++.++.+++++.+...    +++++.+...+||+..|++.|.+ ++++|+++++|++|+. |..     
T Consensus       134 ~~~~~~~~~~~~~~id~~~l~~~i~~~----~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~-g~~~~g~~  208 (402)
T cd00378         134 FESVPYGVDPETGLIDYDALEKMALEF----KPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVA-GLVAGGVF  208 (402)
T ss_pred             EEEecCCcCcccCCcCHHHHHHHHHhC----CCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchh-hhhhcccC
Confidence            777766433  5789999999988632    36777776555799999988865 6999999999999987 753     


Q ss_pred             cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          297 RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       297 ~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      +.++.  ++|++++|+||| |++|+|.++ +.++
T Consensus       209 ~~~~~--~~dv~~~s~sK~-l~G~~gg~i-~~~~  238 (402)
T cd00378         209 PNPLP--GADVVTTTTHKT-LRGPRGGLI-LTRK  238 (402)
T ss_pred             CCccc--CCcEEEeccccC-CCCCCceEE-Eecc
Confidence            34444  689999999999 766976444 4444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.58  E-value=4.5e-14  Score=140.73  Aligned_cols=161  Identities=12%  Similarity=-0.021  Sum_probs=121.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.++++|+++|++ .  .|+|++ ++.++.++..  -+++||+++ +..+|+  ...+..++++.|++++
T Consensus        48 y~r~~~p~~~~le~~lA~l~g~~-~--~v~~~s-G~~ai~~~l~--~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~  121 (390)
T PRK08064         48 YSRSGNPTREALEDIIAELEGGT-K--GFAFAS-GMAAISTAFL--LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT  121 (390)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCC-C--eEEECC-HHHHHHHHHH--HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEE
Confidence            34444456788999999999986 2  466644 4668877665  357899854 566666  2345556677899999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .++.+      +.+++++++++     +|++|.+...+|  |.+.|++.|.+ +|++|+++++|++++. +.....+ ++
T Consensus       122 ~v~~~------d~~~l~~~l~~-----~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~-~~~~~~~-~~  188 (390)
T PRK08064        122 FVDMT------NLEEVAQNIKP-----NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLT-PLLQKPL-DL  188 (390)
T ss_pred             EECCC------CHHHHHHhcCC-----CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCc-ccccCch-hh
Confidence            98763      45778888765     478998887777  99999987764 6999999999999998 7653333 46


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++|+++.|+||| +++|.|  .|++++++
T Consensus       189 g~Divv~S~tK~-~~G~~~~laG~~v~~~  216 (390)
T PRK08064        189 GADVVLHSATKF-LAGHSDVLAGLAVVKD  216 (390)
T ss_pred             CCcEEEeeccee-ccCCccceeEEEEeCC
Confidence            899999999999 888887  48888764

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.58  E-value=4.1e-14  Score=139.18  Aligned_cols=160  Identities=13%  Similarity=0.027  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+++++++|++   + .++++|+|+|+++++.++.+++||+++ +...|..  ....+...|++++.++++..++
T Consensus        30 ~~~~le~~la~~~g~~---~-~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~  103 (380)
T TIGR03588        30 TVPAFEEALAEYVGAK---Y-AVAFNSATSALHIACLALGVGPGDRVWTTPITFVA--TANCALYCGAKVDFVDIDPDTG  103 (380)
T ss_pred             hHHHHHHHHHHHHCCC---e-EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHH--HHHHHHHcCCEEEEEecCCCcC
Confidence            3577899999999984   2 445557899999999998888999865 5555442  2233456799999999865456


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC----cEEEE
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP----DFVLC  310 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~----DFvv~  310 (344)
                      .++.++|++.++.. +..++++|.+++. +|...|++.|.+ |+++|+++++|++|++ |.. ++...++.    |+.++
T Consensus       104 ~~d~~~l~~~i~~~-~~~~t~~v~~~~~-~G~~~~~~~i~~l~~~~~~~lI~D~a~a~-g~~-~~~~~~g~~~~~d~~~~  179 (380)
T TIGR03588       104 NIDEDALEKKLAAA-KGKLPKAIVPVDF-AGKSVDMQAIAALAKKHGLKIIEDASHAL-GAE-YGGKPVGNCRYADATVF  179 (380)
T ss_pred             CcCHHHHHHHhhcc-cCCCceEEEEeCC-CCccCCHHHHHHHHHHcCCEEEEECCCcc-cCc-cCCEeCCCccccceEEE
Confidence            78999999988721 0014677765432 599999987765 6899999999999999 976 66666666    99999


Q ss_pred             ccc--cCCCCCCCceEEEEE
Q 035915          311 NLD--NTQNAQPSKITCLLI  328 (344)
Q Consensus       311 S~H--K~l~G~P~GiG~L~V  328 (344)
                      |+|  || ++.|. -|+++.
T Consensus       180 S~~~~K~-~~~~~-GG~v~~  197 (380)
T TIGR03588       180 SFHPVKI-ITTAE-GGAVTT  197 (380)
T ss_pred             ecCCCCc-ccccC-ceEEEE
Confidence            999  88 65442 333443

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.55  E-value=1.5e-13  Score=135.16  Aligned_cols=161  Identities=10%  Similarity=-0.012  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....++++|+++|+++|++ +  .++||+|++..+. ++..+ .++|+.+++ ..+|... +..+....+..+.+ +   
T Consensus        54 ~~~~~~~~e~~la~~~~~~-~--~l~~~sG~~a~~~-~~~~~-~~~~d~ii~d~~~H~sv-~~~~~~~~~~~~~~-~---  123 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAP-E--AFIVPSGYMANLG-LCAHL-SSVTDYVLWDEQVHISV-VYSLSVISGWHQSF-R---  123 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCC-e--EEEECChHHHHHH-HHHHh-CCCCCEEEEEhhhhHHH-HHHHHHcCCceEEe-c---
Confidence            5567899999999999995 3  5889988865443 33333 246778765 6666522 22222122444332 2   


Q ss_pred             CCCccCHHHHHHHhhhcCCC-CCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC----CCC
Q 035915          233 LDLRIKGSQLSQYFRRKCKH-TPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA----LHR  304 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~-~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs----~l~  304 (344)
                         ..+.++|++.++...+. ..+.+|++++++|  |.++|+++|.+ ++++|++++||++|++ |+.+.+..    .++
T Consensus       124 ---~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~-G~~g~~g~g~~~~~~  199 (370)
T PRK05937        124 ---HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAM-GIFGDDGKGFCHSLG  199 (370)
T ss_pred             ---CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCchHHhhC
Confidence               24678888888632111 2356777887775  99999988865 6889999999999999 99888863    233


Q ss_pred             ---CcEEEEccccCCCCCCCceEEEEEeC
Q 035915          305 ---PDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       305 ---~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                         .|.+++|++|+ || |.|.|+|+.++
T Consensus       200 ~~~~~~~~~tlsK~-~g-~~G~~vl~~~~  226 (370)
T PRK05937        200 YENFYAVLVTYSKA-LG-SMGAALLSSSE  226 (370)
T ss_pred             CCCCcEEEEechhh-hh-cCceEEEcCHH
Confidence               23566788898 87 88999998754

>PLN02271 serine hydroxymethyltransferase

Probab=99.55  E-value=1.2e-13  Score=143.19  Aligned_cols=167  Identities=13%  Similarity=0.020  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCC--eEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HHHHH----HHHHcCCcEEE
Q 035915          157 PEIQARNKVLKHCGLPDDEY--LVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LDYVR----EFASFKESKVI  226 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey--~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~~ir----~la~~~G~kV~  226 (344)
                      ...-|.++..++||++.+++  +|- --+++.|+..+..++ +++||.|++ ..+|.   .....    ..+...|..+.
T Consensus       195 iE~la~era~~lF~~~~~~~gaNVQ-p~SGs~AN~aV~~AL-l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~  272 (586)
T PLN02271        195 IERLCCERALAAFGLDSEKWGVNVQ-PYSCTSANFAVYTGL-LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFE  272 (586)
T ss_pred             HHHHHHHHHHHHhCCccccccccee-eccHHHHHHHHHHHh-cCCCCEEEEecCCCCCchhcccccccccccccccceEE
Confidence            44788899999999876433  222 238888999999888 899999875 66655   11110    12344566666


Q ss_pred             EEe--CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC--
Q 035915          227 LAP--EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA--  301 (344)
Q Consensus       227 ~vp--~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs--  301 (344)
                      .+|  ++..++.||.++|++....    .+++|+.+.+.++-..+|++.+++ |++.|+++++|++|.+ |.+..++-  
T Consensus       273 ~vpY~~d~~~g~IDyd~lek~a~~----~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~a-GLIa~g~~~s  347 (586)
T PLN02271        273 SLPYKVNPQTGYIDYDKLEEKALD----FRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHIS-GLVAAKECVN  347 (586)
T ss_pred             EEEcccccccCccCHHHHHHHhhh----cCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccc-cccccCcCCC
Confidence            666  5555688999999985433    258899998877778899988875 5899999999999999 99977743  


Q ss_pred             -CCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          302 -LHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       302 -~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                       ...+|+++++.||| +.||.| |++++|++.
T Consensus       348 P~~~aDvvt~TTHKt-LrGPrG-G~I~~r~~~  377 (586)
T PLN02271        348 PFDYCDIVTSTTHKS-LRGPRG-GIIFYRKGP  377 (586)
T ss_pred             CCcCCcEEEeCCccc-CCCCCc-eEEEecccc
Confidence             23689999999999 666999 888888753

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.55  E-value=4e-13  Score=133.03  Aligned_cols=176  Identities=9%  Similarity=0.001  Sum_probs=127.1

Q ss_pred             chHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH
Q 035915          134 LEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELD  212 (344)
Q Consensus       134 ~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~  212 (344)
                      .+.+.+.+.+.....+.|    ....+.++++|+++|++    .+++|+|+|+|+++++.++.+.+||+++ +...|...
T Consensus        15 ~e~~~~~~~l~~~~~~~g----~~~~~le~~la~~~g~~----~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~   86 (379)
T PRK11658         15 EELAAVKEVLRSGWITTG----PKNQALEQAFCQLTGNQ----HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVST   86 (379)
T ss_pred             HHHHHHHHHHHcCCccCC----HhHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHH
Confidence            345555554433322222    24678899999999984    3789999999999999998778999865 45555422


Q ss_pred             HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEeccccc
Q 035915          213 YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATAL  291 (344)
Q Consensus       213 ~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa  291 (344)
                        ...+...|++++.++.+..+..++.++|++.+++     ++++|...+ ..|...|++.|.+ |+++|+++++|++|+
T Consensus        87 --~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-----~tkav~~~~-~~G~~~d~~~i~~~a~~~gi~vi~D~a~a  158 (379)
T PRK11658         87 --LNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP-----RTKAIIPVH-YAGAPADLDAIRAIGERYGIPVIEDAAHA  158 (379)
T ss_pred             --HHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc-----CCeEEEEeC-CCCCcCCHHHHHHHHHHcCCeEEEECCCc
Confidence              1223456999999998765556899999998875     366665332 2599999987765 699999999999999


Q ss_pred             CcCCccC--CCCCCCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          292 VVGEDRL--NLALHRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       292 ~~G~~~L--DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      + |....  ++..++.|+++|+.+|+ +.+  |-|.+++.
T Consensus       159 ~-g~~~~~~~~g~~g~~~~Sf~~~K~-l~~--g~GG~v~~  194 (379)
T PRK11658        159 V-GTYYKGRHIGARGTAIFSFHAIKN-ITC--AEGGLVVT  194 (379)
T ss_pred             c-CCeECCeecCCCCCEEEeCCCCCc-Ccc--cCceEEEE
Confidence            9 87654  36667789999999998 543  44555553

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.54  E-value=2e-13  Score=130.77  Aligned_cols=163  Identities=11%  Similarity=0.032  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....++.|+.+++++|++ +  .|+ +.++|+++..+..++ +.+|++|+ ...+|..  ....++..|+++..++.  
T Consensus        44 ~~~~~~~l~~~la~~~~~~-~--~iv-~~sg~~a~~~~~~~~-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~--  114 (349)
T cd06454          44 TSDLHEELEEELAEFHGKE-A--ALV-FSSGYAANDGVLSTL-AGKGDLIISDSLNHAS--IIDGIRLSGAKKRIFKH--  114 (349)
T ss_pred             CchHHHHHHHHHHHHhCCC-C--EEE-eccHHHHHHHHHHHh-cCCCCEEEEehhhhHH--HHHHHHHcCCceEEecC--
Confidence            3556789999999999984 2  355 455577776666655 46899865 4445442  12234456888877652  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCcc--------CCCC
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDR--------LNLA  301 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~--------LDLs  301 (344)
                          ++.++++++++......++++|.+.+.+|  |.+.|++.|. .|+++|+++++|++|+. |..+        ++..
T Consensus       115 ----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~-g~~~~~~~~~~~~~~~  189 (349)
T cd06454         115 ----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSV-GVYGPHGRGVEEFGGL  189 (349)
T ss_pred             ----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccc-cccCCCCCChhhhccc
Confidence                35667888876421012467888876654  9999998775 47999999999999998 7653        2334


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ..++|+++.|+||+ || +.| |+++.+++..
T Consensus       190 ~~~~~i~~~s~sK~-~~-~~g-G~i~~~~~~~  218 (349)
T cd06454         190 TDDVDIIMGTLGKA-FG-AVG-GYIAGSKELI  218 (349)
T ss_pred             cccCcEEEeechhh-hc-ccC-CEEECCHHHH
Confidence            56789999999999 88 446 7777666543

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.53  E-value=1.3e-13  Score=151.32  Aligned_cols=159  Identities=16%  Similarity=0.103  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC--CeE-EEcCCcC--HHHHHHHHHcCCcEEEEEe
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG--NFY-MTIIGEE--LDYVREFASFKESKVILAP  229 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G--d~i-vS~~eH~--~~~ir~la~~~G~kV~~vp  229 (344)
                      -+.+.+.|..|++++|++++  ++.|+.|+|++++.++.++++.+|  ++| ++..+|+  ...|+.+++..|++|+.+|
T Consensus       147 lqal~~~Qt~ia~LtG~~~a--naSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~  224 (993)
T PLN02414        147 LESLLNYQTMITDLTGLPMS--NASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVAD  224 (993)
T ss_pred             HHHHHHHHHHHHHHhCCChh--hEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEec
Confidence            34679999999999999987  799999999999999888887755  555 5788888  3467888888999999998


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHH-HHHhCCcEEEecccccCcCCccC-CCCCCCCc
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRL-NLALHRPD  306 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~L-DLs~l~~D  306 (344)
                      .+..+          ....     .+..+.++.-+ +|.+.|++.|. .+|++|++++| |+|.+ +...+ +..++++|
T Consensus       225 ~~~~~----------~~~~-----~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~l-al~~l~~pge~GAD  287 (993)
T PLN02414        225 EKDFD----------YSSG-----DVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLL-ALTMLKPPGEWGAD  287 (993)
T ss_pred             chhhc----------cccC-----ceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHH-HhcCCCCHhhccCc
Confidence            74311          0010     12122222223 39999998775 57999999999 99999 99888 58899999


Q ss_pred             EEEEccccCCC-----CCCCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQN-----AQPSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~-----G~P~GiG~L~Vr~~~~~  334 (344)
                      |+++++||| .     |||. +|+||+|++...
T Consensus       288 i~vgsgqKw-g~P~G~GGP~-aGflavr~~~~r  318 (993)
T PLN02414        288 IVVGSAQRF-GVPMGYGGPH-AAFLATSQEYKR  318 (993)
T ss_pred             EEEECCCcc-ccCCCCCCCC-eeEEEECHHHHh
Confidence            999999999 4     5563 999999987543

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.53  E-value=3.2e-13  Score=136.68  Aligned_cols=156  Identities=10%  Similarity=-0.028  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...+...+++|++.|+.    ..++|+|+++|+..++.++ +.+||+|+ ....|+  ...+...++..|++++.++.. 
T Consensus        64 p~~~~Le~~lA~leg~~----~al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-  137 (431)
T PRK08248         64 PTTDVFEKRIAALEGGI----GALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-  137 (431)
T ss_pred             chHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-
Confidence            34567788899999973    3788999999999888777 67899865 444454  234555667789999988753 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.+++++++++     ++++|.+.+.+|  |.++|++.|.+ +|++|+++++|++++. +....++ ++++|+++
T Consensus       138 -----d~e~l~~ai~~-----~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~-~~~~~pl-~~gaDivv  205 (431)
T PRK08248        138 -----DPENFEAAITD-----KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS-PYLLRPI-EHGADIVV  205 (431)
T ss_pred             -----CHHHHHHhcCC-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc-cccCChh-HcCCCEEE
Confidence                 56788888865     467888876666  99999987765 6999999999999997 6655555 57999999


Q ss_pred             EccccCCCCCCC-ceEEEEEeC
Q 035915          310 CNLDNTQNAQPS-KITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~-GiG~L~Vr~  330 (344)
                      .|+||| +|+|. -+|.+++..
T Consensus       206 ~S~tK~-lgg~g~~~Gg~v~~~  226 (431)
T PRK08248        206 HSATKF-IGGHGTSIGGVIVDS  226 (431)
T ss_pred             EcCccc-cCCCCCceEEEEEeC
Confidence            999999 88774 288888854

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.53  E-value=3.2e-13  Score=137.06  Aligned_cols=159  Identities=11%  Similarity=-0.035  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++++|++.|+.    ..+++++++.|+.+++.++ .++||+|+ +...|.  .+.+...+.+.|+++..++ +
T Consensus        68 ~p~~~~Le~~lA~l~g~~----~av~~sSG~aAi~~al~al-l~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d  141 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGV----AALLLASGQAAETFAILNL-AGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D  141 (436)
T ss_pred             CchHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C
Confidence            345677888999999985    2677778888999888777 57899865 555555  2233444456789888885 2


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      .    .+.+++++++++     ++++|.+.+.+|  |.+.|++.|.+ +|++|+.++||++|+. |...-.+ ++++|++
T Consensus       142 ~----~d~e~l~~ai~~-----~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~-~~~~~pl-~~GaDiv  210 (436)
T PRK07812        142 P----DDLDAWRAAVRP-----NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIAT-PYLIRPL-EHGADIV  210 (436)
T ss_pred             C----CCHHHHHHhCCC-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hcCCCEE
Confidence            2    267788888765     478898888876  99999988865 6999999999999998 7665444 4799999


Q ss_pred             EEccccCCCCCCC-ceEEEEEeCC
Q 035915          309 LCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       309 v~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                      +.|+||| +|++. .+|.+++...
T Consensus       211 v~S~tK~-lgg~G~~i~G~vv~~~  233 (436)
T PRK07812        211 VHSATKY-LGGHGTAIAGVIVDGG  233 (436)
T ss_pred             EEecccc-cCCCCCeEEEEEEcCC
Confidence            9999999 88662 2888888543

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.53  E-value=2.6e-13  Score=135.31  Aligned_cols=160  Identities=11%  Similarity=0.024  Sum_probs=120.2

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +.....+++.|+++|+++|++    .+++|+|+++|+.+++.++ +++||+++ +...|.  ...+...++..|++++.+
T Consensus        57 r~~~p~~~~le~~la~l~g~~----~~v~~ssG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v  131 (390)
T PRK08133         57 RFTNPTVTMFQERLAALEGAE----ACVATASGMAAILAVVMAL-LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV  131 (390)
T ss_pred             CCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE
Confidence            344456789999999999984    3788999999999888877 67899865 455565  233444556679999988


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +.+      +.+++++++++     +|++|.+...+|  |.++|++.|.+ +|++|+++++|.+++. +.....+ .+++
T Consensus       132 d~~------d~~~l~~~i~~-----~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~-~~~~~pl-~~g~  198 (390)
T PRK08133        132 DLT------DLDAWRAAVRP-----NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCT-PALQQPL-KLGA  198 (390)
T ss_pred             CCC------CHHHHHHhcCc-----CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhCC
Confidence            764      46778888865     478888876666  99999987764 6999999999999977 5433223 3578


Q ss_pred             cEEEEccccCCCCCCCc--e-EEEEEeCC
Q 035915          306 DFVLCNLDNTQNAQPSK--I-TCLLIRKK  331 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--i-G~L~Vr~~  331 (344)
                      |++++|++|+ ++++ |  + |+++.+++
T Consensus       199 Divv~S~sK~-~~g~-g~~~GG~vv~~~~  225 (390)
T PRK08133        199 DVVIHSATKY-LDGQ-GRVLGGAVVGSKE  225 (390)
T ss_pred             cEEEeeccee-ecCC-cceEeEEEEcCHH
Confidence            9999999999 8845 4  5 45554544

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.53  E-value=1.8e-13  Score=136.17  Aligned_cols=158  Identities=10%  Similarity=0.021  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-H-HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-L-DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-~-~~ir~la~~~G~kV~~vp~~~  232 (344)
                      -.....++++|++.|+.    .+++|+|+++|+..++.++ +++||+++ +...++ . ..+....+..|+++..++.+.
T Consensus        50 Pt~~~lE~~lA~l~g~~----~~~~~~sG~~Ai~~al~al-l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~  124 (377)
T TIGR01324        50 LTHFALQDAMCELEGGA----GCYLYPSGLAAVTNSILAF-VKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLI  124 (377)
T ss_pred             ccHHHHHHHHHHHhCCC----cEEEECcHHHHHHHHHHHh-cCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCC
Confidence            34567888899999973    4889999999999999888 78999975 554554 2 222333455688887775431


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                            .+++++++++     +|++|.+.+.+|  |.+.|++.|.+ ||++|+++++|++|+. |... +.-++++|+++
T Consensus       125 ------~e~l~~~i~~-----~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~-g~~~-~pl~~gaDivv  191 (377)
T TIGR01324       125 ------GEDIATLIQP-----NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAA-GLLF-KPLEHGVDISI  191 (377)
T ss_pred             ------HHHHHHhcCC-----CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc-cccc-CccccCceEEE
Confidence                  2678887765     478999987776  99999987765 6999999999999999 8762 23357999999


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      .|++|| +|++.+  .|+++.+++.
T Consensus       192 ~S~tK~-l~G~~d~~gG~v~~~~~~  215 (377)
T TIGR01324       192 QAGTKY-LVGHSDIMIGTVVANART  215 (377)
T ss_pred             ecCcee-ccCCCCceEEEEEeCHHH
Confidence            999999 887765  4677766543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.53  E-value=1e-13  Score=152.02  Aligned_cols=159  Identities=13%  Similarity=-0.033  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC--CeE-EEcCCcCH--HHHHHHHHcCCcEEEEEeC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG--NFY-MTIIGEEL--DYVREFASFKESKVILAPE  230 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G--d~i-vS~~eH~~--~~ir~la~~~G~kV~~vp~  230 (344)
                      +.+.+.|..|++++|+++.  ++.|+.|+|++.+.++.+++++++  ++| ++..+|+.  ..|+.+++..|++|+.+|.
T Consensus       121 eal~~~Qt~la~LtG~~~a--naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~  198 (954)
T PRK05367        121 EALLNFQTMVADLTGLEIA--NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDA  198 (954)
T ss_pred             HHHHHHHHHHHHHHCCChh--hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecC
Confidence            3568999999999999877  699999999999999988888775  675 67888883  4577888889999999987


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      +. +.  +        .     .++..+.++.-++ |.+.|++.|. .+|++|++++|||.|.+ .....+..++++||+
T Consensus       199 ~~-d~--~--------~-----~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~A-l~~l~~pge~GaDi~  261 (954)
T PRK05367        199 AK-AL--D--------H-----DDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLA-LTLLTPPGEMGADIA  261 (954)
T ss_pred             cc-CC--C--------c-----ccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhh-ccCCCChhhcCCCEE
Confidence            53 11  1        1     1233333333233 9999997775 57999999999998855 445557899999999


Q ss_pred             EEccccC----CCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNT----QNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~----l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++|||    -|||| |+|+|++|++...
T Consensus       262 vgs~qkfg~P~g~GGP-~aGflavr~~~~r  290 (954)
T PRK05367        262 VGSAQRFGVPMGFGGP-HAAYFAVRDAYKR  290 (954)
T ss_pred             EeeCcccCCCCCCCCC-CEEEEEECHHHHh
Confidence            9999998    35667 6999999986543

>PLN02880 tyrosine decarboxylase

Probab=99.52  E-value=3.3e-13  Score=138.75  Aligned_cols=176  Identities=9%  Similarity=-0.040  Sum_probs=120.1

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCC-----CeEEEeCCHHHHHHHHH---hhC-----CCCC-CCeE--EEcCCcCHHHH
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDE-----YLVLFTPNYRDAMMLVG---ESY-----PFFR-GNFY--MTIIGEELDYV  214 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~e-----y~VVFTsnaTeAlnlva---~sl-----~~~~-Gd~i--vS~~eH~~~~i  214 (344)
                      +..++....++-+.+++++|.+.+.     -.-+||+|+|+|+.+.+   +..     .+.. ...+  +|..-|.  ++
T Consensus       117 sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~--Sv  194 (490)
T PLN02880        117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS--AL  194 (490)
T ss_pred             CcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH--HH
Confidence            3445566789999999999997421     14789999999965432   211     1110 1222  3444444  25


Q ss_pred             HHHHHcCCc---EEEEEeCCC-CCCccCHHHHHHHhhhcCCCC-CeeEEEEeCcc-c-cccccHHHHHH-HHhCCcEEEe
Q 035915          215 REFASFKES---KVILAPEAW-LDLRIKGSQLSQYFRRKCKHT-PKGLFSYPADI-N-GTRYSMHWISE-AHRNSWHVLL  286 (344)
Q Consensus       215 r~la~~~G~---kV~~vp~~~-~~g~i~~~~L~~~l~~~~~~~-~t~LVa~~avS-N-G~i~Pl~~Ia~-ar~~g~~vlv  286 (344)
                      ...|.-.|+   .|+.+|.+. .+++++.+.|++.+....... .+-+|+.++-+ + |.+-|++.|++ |+++|+++||
T Consensus       195 ~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHV  274 (490)
T PLN02880        195 QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHV  274 (490)
T ss_pred             HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEE
Confidence            555555676   378889874 246899999999986432111 22344444433 3 99999988875 6999999999


Q ss_pred             cccccCcCCccC-----CCCC-CCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          287 DATALVVGEDRL-----NLAL-HRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       287 DAaQa~~G~~~L-----DLs~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      |||++. +....     .+.. .++|++++++||| ++.|.|+|+||+|+
T Consensus       275 DaA~gg-~~~~~~~~~~~l~gie~aDSit~d~HKw-l~~P~~~g~llvr~  322 (490)
T PLN02880        275 DAAYAG-SACICPEYRHYIDGVEEADSFNMNAHKW-FLTNFDCSLLWVKD  322 (490)
T ss_pred             ehhhHH-HHHhCHHHHHHhcCchhcCEEEECchhh-cCCCccEEEEEEeC
Confidence            999998 65433     2444 4799999999999 67799999999996

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.51  E-value=4.3e-13  Score=134.17  Aligned_cols=156  Identities=13%  Similarity=-0.018  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...+..++++|++.|+  +  .+++|+|+++|+++++.++ +++||++++ ...|.  ...+...+...|+++..++.  
T Consensus        53 pt~~~Le~~lA~leg~--e--~ivvt~gg~~Ai~~~l~al-l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~--  125 (388)
T PRK08861         53 PNRGLLEQTLSELESG--K--GAVVTNCGTSALNLWVSAL-LGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ--  125 (388)
T ss_pred             chHHHHHHHHHHHhCC--C--eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC--
Confidence            3467788889999996  3  6999999999999999888 689999764 33343  22233444556788888753  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                          .+.+++++++++     ++++|.+...+|  |.++|++.|.+ ++++|+++++|.+++. |.....+ ++++|+++
T Consensus       126 ----~d~e~l~~~i~~-----~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~-~~~~~pl-~~GaDivv  194 (388)
T PRK08861        126 ----SDAAALDAALAK-----KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT-PVLQKPL-ELGADFVI  194 (388)
T ss_pred             ----CCHHHHHHhcCc-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc-cccCCCc-ccCCCEEE
Confidence                256778887764     478888887776  99999987764 6899999999999998 6543333 35899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      +|+||| ++||.+  .|+++.++
T Consensus       195 ~S~tK~-l~G~~d~~gG~i~~~~  216 (388)
T PRK08861        195 HSTTKY-INGHSDVIGGVLITKT  216 (388)
T ss_pred             eeccee-ccCCCcceeEEEEecH
Confidence            999999 887865  35555543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.51  E-value=7.5e-13  Score=133.67  Aligned_cols=156  Identities=15%  Similarity=0.069  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ......++++|++.|+.    ..+++++++.|+.+++.++ +++|++++ +...|+  ...+...+.+.|+++++++.+ 
T Consensus        63 p~~~~le~~lA~l~g~~----~al~~~SG~~Ai~~al~al-l~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-  136 (427)
T PRK05994         63 PTNAVLEERVAALEGGT----AALAVASGHAAQFLVFHTL-LQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-  136 (427)
T ss_pred             ccHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC-
Confidence            34567788999999985    2678899999999988887 67899965 455565  234555566789999888753 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.+++++.+++     ++++|.+.+.+|  |.++|++.|.+ +|++|+++++|.+|+. |.....+ ++++|+++
T Consensus       137 -----d~~~l~~ai~~-----~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~-~~~~~pl-~~gaDivv  204 (427)
T PRK05994        137 -----DPASFERAITP-----RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLAS-PYLIRPI-EHGADIVV  204 (427)
T ss_pred             -----CHHHHHHhcCc-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccc-cccCCcc-ccCCcEEE
Confidence                 46778888865     478888887777  99999987765 6999999999999998 7654334 47999999


Q ss_pred             EccccCCCCCCCc-eEEEEEeC
Q 035915          310 CNLDNTQNAQPSK-ITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G-iG~L~Vr~  330 (344)
                      .|+||+ +|+|.| +|.+++..
T Consensus       205 ~S~tK~-lgg~~~~~gG~v~~~  225 (427)
T PRK05994        205 HSLTKF-LGGHGNSMGGIIVDG  225 (427)
T ss_pred             EcCccc-cCCCCCcEEEEEEeC
Confidence            999999 887754 78887753

>PRK07179 hypothetical protein; Provisional

Probab=99.51  E-value=6.4e-13  Score=131.88  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.++++|+++|++    .++||+|+|+|+++++.++. .+|+.+ +...+|... + ..++..|+++...+.     
T Consensus       100 ~~~~le~~la~~~g~~----~~~~~~sG~~An~~~l~~l~-~~g~~v~~~~~~h~s~-~-~~~~~~g~~~~~~~~-----  167 (407)
T PRK07179        100 PKPQFEKKLAAFTGFE----SCLLCQSGWAANVGLLQTIA-DPNTPVYIDFFAHMSL-W-EGVRAAGAQAHPFRH-----  167 (407)
T ss_pred             HHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHhC-CCCCEEEEECCcCHHH-H-HHHHHCCCeEEEecC-----
Confidence            3455567999999984    37899999999999998874 468875 466666532 2 223345776654332     


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------CCCCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------LNLALH  303 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------LDLs~l  303 (344)
                       .+.++|++.+++.    .+++|.+..++|  |.++|+++|.+ ++++|+++++|.+|+. |...         +++. .
T Consensus       168 -~d~~~l~~~l~~~----~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~-g~~g~~g~g~~~~~~~~-~  240 (407)
T PRK07179        168 -NDVDHLRRQIERH----GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSL-GTHGPQGAGLVAELGLT-S  240 (407)
T ss_pred             -CCHHHHHHHHHhc----CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccc-cCcCCCCCchHHhcCCC-C
Confidence             3678898888642    367888887775  99999987765 6899999999999998 7532         2332 2


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++|++++|+||+ +| + ++|+++++++..
T Consensus       241 ~vdi~~~S~sK~-~g-~-~~G~l~~~~~~~  267 (407)
T PRK07179        241 RVHFITASLAKA-FA-G-RAGIITCPRELA  267 (407)
T ss_pred             CCCEEEeechHh-hh-c-cCeEEEeCHHHH
Confidence            579999999999 88 5 489999887653

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.50  E-value=3.1e-13  Score=130.33  Aligned_cols=163  Identities=15%  Similarity=0.096  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      ++.|+.+|+++|++++  +|+||+|+|+++++++.++ ..+|+.++.. ..+.  .+...++..|+++..+|.+. ++.+
T Consensus        57 ~~lr~~ia~~~~~~~~--~i~~~~G~~~~l~~~~~~l-~~~gd~v~~~~p~y~--~~~~~~~~~g~~~~~~~~~~-~~~~  130 (346)
T TIGR01141        57 AELKQALADYYGVDPE--QILLGNGSDEIIELLIRAF-LEPGDAVLVPPPTYS--MYEISAKIHGAEVVKVPLDE-DGQL  130 (346)
T ss_pred             HHHHHHHHHHhCcChH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCHH--HHHHHHHHcCCeEEEeccCC-CCCC
Confidence            6799999999998776  7999999999999988887 4678886543 3322  23344566799999999875 3678


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC--CcEEEecccccCcCCc--cCCC-CCCCCcEEE
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN--SWHVLLDATALVVGED--RLNL-ALHRPDFVL  309 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~--g~~vlvDAaQa~~G~~--~LDL-s~l~~DFvv  309 (344)
                      +.+++++.+++     +++++.++..+|  |..+|++.+.+ ++..  ++++++|.++.-....  .+++ .....++++
T Consensus       131 d~~~l~~~~~~-----~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~  205 (346)
T TIGR01141       131 DLEDILVAIDD-----KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVL  205 (346)
T ss_pred             CHHHHHHhcCC-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEE
Confidence            99999887653     467888876666  99999977755 4544  9999999998731211  1222 122335778


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .|++|| ||.| |  +|++++++++.+
T Consensus       206 ~S~sK~-~g~~-G~r~G~~~~~~~~~~  230 (346)
T TIGR01141       206 RTLSKA-FGLA-GLRIGYAIANAEIID  230 (346)
T ss_pred             ehhhHh-hhch-hhhceeeecCHHHHH
Confidence            899999 8744 5  799998876544

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.50  E-value=3.9e-13  Score=147.48  Aligned_cols=164  Identities=17%  Similarity=0.103  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHH-----HHHHHHHhhCCCCCCC----e-EEEcCCcCHHHHHHHHHcCCcEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYR-----DAMMLVGESYPFFRGN----F-YMTIIGEELDYVREFASFKESKV  225 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaT-----eAlnlva~sl~~~~Gd----~-ivS~~eH~~~~ir~la~~~G~kV  225 (344)
                      +.+.+..+.+++++|.+    .+.|++|+|     .++ ++++.+.+++|+    . +++...|..+.  ..+...|++|
T Consensus       542 ~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL-~a~r~~~~~~G~~~r~~vlis~~aH~snp--~sa~~~G~~v  614 (954)
T PRK05367        542 ELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRDVCLIPSSAHGTNP--ASAVMAGMKV  614 (954)
T ss_pred             HHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHH-HHHHHHhhccCCCCCCEEEEEchhhhhhH--HHHHHCCCEE
Confidence            45688999999999985    488988887     334 567777666665    2 46777777542  1245569999


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCc--cc-ccc-ccHHHHHH-HHhCCcEEEecccccCcCCccCCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPAD--IN-GTR-YSMHWISE-AHRNSWHVLLDATALVVGEDRLNL  300 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~av--SN-G~i-~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL  300 (344)
                      +++|.+. +|.+|.++|++.++++    ++++++++.+  ++ |.. .|++.|.+ +|++|++++||+||.. ++..+.-
T Consensus       615 v~v~~d~-~G~iD~~~L~~~i~~~----~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~-al~~l~~  688 (954)
T PRK05367        615 VVVACDE-NGNIDLDDLRAKAEEH----ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMN-AQVGLAR  688 (954)
T ss_pred             EEECCCC-CCCcCHHHHHHHHhcc----CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChh-hccCCCC
Confidence            9999875 5899999999998752    2344444433  33 664 79987765 6999999999999997 7665553


Q ss_pred             -CCCCCcEEEEccccCCCCCCC-----ceEEEEEeCCCc
Q 035915          301 -ALHRPDFVLCNLDNTQNAQPS-----KITCLLIRKKSF  333 (344)
Q Consensus       301 -s~l~~DFvv~S~HK~l~G~P~-----GiG~L~Vr~~~~  333 (344)
                       .++++|++++|+||| ||.|.     |+|+|+||+...
T Consensus       689 pg~~GADi~~~s~HK~-f~~P~G~GGPg~G~l~vr~~l~  726 (954)
T PRK05367        689 PGDIGADVSHLNLHKT-FCIPHGGGGPGVGPIGVKAHLA  726 (954)
T ss_pred             hhhcCCCEEEecCccc-CCCCcCCCCCceEEEeeccccc
Confidence             368999999999999 75444     577999986543

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.49  E-value=8.3e-13  Score=135.37  Aligned_cols=173  Identities=11%  Similarity=-0.058  Sum_probs=118.6

Q ss_pred             hhhhhhHHH-HHHHHHHHHHcCCCCCCCeEEE---eCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HHHH-HHHHH-
Q 035915          150 PGSFISIPE-IQARNKVLKHCGLPDDEYLVLF---TPNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LDYV-REFAS-  219 (344)
Q Consensus       150 ~g~~as~~l-e~AR~~IA~~Lga~p~ey~VVF---TsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~~i-r~la~-  219 (344)
                      .|...-+.+ +-|+++.+++||+..+  .+.|   ..+++.|+..+..++ +++||.|++ ...+.   .... ..-.+ 
T Consensus        73 ~G~~~~d~lE~~~~~~~~~~f~~~~~--~~~~nv~~~SG~~AN~av~~aL-~~pgD~Il~~d~~~gGhl~H~~~~~g~~~  149 (475)
T PLN03226         73 GGNEYIDQIETLCQKRALEAFRLDPE--KWGVNVQPLSGSPANFAVYTAL-LQPHDRIMGLDLPHGGHLSHGYQTDGKKI  149 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHhCCCcc--eeEEecCcCchHHHHHHHHHHh-CCCCCEEEECCCCcCcchhhhhhhccccc
Confidence            344443444 5689999999999765  3545   356777877788777 579999876 43322   2111 11111 


Q ss_pred             -cCCcEEEEEe--CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcC
Q 035915          220 -FKESKVILAP--EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVG  294 (344)
Q Consensus       220 -~~G~kV~~vp--~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G  294 (344)
                       ..+..+..++  .+..++.+|.++|++.+...    +++++++. .++ |...|++.|.+ ++++|++++||++|.+ |
T Consensus       150 s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~----~pklIv~~-~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~-G  223 (475)
T PLN03226        150 SATSIYFESMPYRLDESTGLIDYDKLEKKAMLF----RPKLIIAG-ASAYPRDWDYARMRKIADKVGALLMCDMAHIS-G  223 (475)
T ss_pred             ccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc----CCeEEEEe-cCcCCCccCHHHHHHHHHHcCCEEEEEchhhh-C
Confidence             1122222233  34446889999999988642    35566554 344 99999988865 6999999999999999 9


Q ss_pred             CccCCCCC---CCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          295 EDRLNLAL---HRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       295 ~~~LDLs~---l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ....++..   ..+||+++++||| ++||.| |+++++++..
T Consensus       224 li~~~~~~~p~~~~Div~~t~hK~-L~GP~G-g~I~~~~~~~  263 (475)
T PLN03226        224 LVAAQEAASPFEYCDVVTTTTHKS-LRGPRG-GMIFFRKGPK  263 (475)
T ss_pred             cccCCCCCCCCCCCeEEEecCccc-ccCCCc-eEEEEchhhc
Confidence            98877543   2799999999999 756999 8888887543

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.49  E-value=9.8e-13  Score=131.77  Aligned_cols=163  Identities=10%  Similarity=-0.046  Sum_probs=119.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC-H-HHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE-L-DYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~-~-~~ir~la~~~G~kV~~  227 (344)
                      ++......++.++++++++|++.    .+.++|++.|+.+++.++ +++||+|+. ...|. . ......++..|++++.
T Consensus        60 ~r~~~p~~~~le~~lA~l~g~~~----~i~~~sG~~Al~~~l~~l-l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~  134 (403)
T PRK07503         60 SRISNPTLALLEQRMASLEGGEA----AVALASGMGAITATLWTL-LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRH  134 (403)
T ss_pred             eCCCCchHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHH-cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEE
Confidence            33344457889999999999852    455667788999988877 789999654 33343 2 2233445667999988


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++.+      +.++|++++++     ++++|.+...+|  |.+.|++.|.+ ++++|+++++|.+++. +.....+ .++
T Consensus       135 vd~~------d~~~l~~~i~~-----~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~-~~~~~~l-~~g  201 (403)
T PRK07503        135 VDLT------DPAALKAAISD-----KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCT-PYLQRPL-ELG  201 (403)
T ss_pred             eCCC------CHHHHHHhcCc-----cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhC
Confidence            8763      46778888865     477888876666  99999987765 6999999999999997 6543334 368


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      +|++++|++|+ +|+|.+  .|+++.+++.
T Consensus       202 ~Di~v~S~tK~-l~g~gd~~gG~v~~~~~l  230 (403)
T PRK07503        202 ADLVVHSATKY-LGGHGDITAGLVVGGKAL  230 (403)
T ss_pred             CCEEEcccccc-ccCCCceeEEEEEcCHHH
Confidence            99999999999 886643  6777765544

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.48  E-value=9.1e-13  Score=132.21  Aligned_cols=155  Identities=12%  Similarity=0.005  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-H-HHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-L-DYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-~-~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .....|++||++.|+.    ++++|+|+++|++.++.++ +++||+++ +.-.|. . ..+....++.|+++..++.+  
T Consensus        62 t~~~Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~--  134 (394)
T PRK09028         62 THFAFQAAIVELEGGA----GTALYPSGAAAISNALLSF-LKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM--  134 (394)
T ss_pred             hHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC--
Confidence            4567889999998873    4899999999999998887 78999965 444554 2 22233345678988877543  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                          +.+++++++++     +|++|.+...+|  |.+.|++.|.+ +|++|++++||.+|+. |.. ++--++++|+++.
T Consensus       135 ----~~e~l~~~l~~-----~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~-p~~-~~Pl~~GaDivv~  203 (394)
T PRK09028        135 ----IGEGIRELIRP-----NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWAS-PIN-SRPFEMGVDISIQ  203 (394)
T ss_pred             ----CHHHHHHhcCc-----CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccc-ccc-CCccccCceEEEE
Confidence                24568887765     478999998887  99999987754 6999999999999998 732 2222478999999


Q ss_pred             ccccCCCCCCCc--eEEEEEeC
Q 035915          311 NLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       311 S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      |+||| ++|+.+  .|+++.++
T Consensus       204 S~tK~-l~Gh~d~~~G~~~~~~  224 (394)
T PRK09028        204 AATKY-IVGHSDVMLGTATANE  224 (394)
T ss_pred             eCCeE-ecCCCCEEEEEEECCH
Confidence            99999 877843  34444343

>PRK05939 hypothetical protein; Provisional

Probab=99.48  E-value=3.6e-12  Score=127.75  Aligned_cols=159  Identities=11%  Similarity=-0.012  Sum_probs=119.9

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-H-HHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-L-DYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-~-~~ir~la~~~G~kV~~  227 (344)
                      ++.-....++..++++++.|+..   .|+|++| +.|+..++.++ +++||+|+ +...|. . ..+.. +++.|++++.
T Consensus        42 ~r~g~p~~~~lE~~la~leg~~~---~v~~ssG-~~Ai~~~l~al-l~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~  115 (397)
T PRK05939         42 ARQGTPTTAALEAKITKMEGGVG---TVCFATG-MAAIAAVFLTL-LRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTM  115 (397)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCe---EEEeCCH-HHHHHHHHHHH-cCCCCEEEECCCccccHHHHHHH-HHhcCCEEEE
Confidence            34444567788899999999852   5777765 78999988877 78999865 455554 2 23443 4567999998


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++..      +.++|++++++     +|++|.+.+.+|  |.+.|++.|.+ ||++|+++++|++|+. |. .++...++
T Consensus       116 v~~~------d~e~l~~~l~~-----~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~-~~-~~~~~~~g  182 (397)
T PRK05939        116 VDAT------DVQNVAAAIRP-----NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTS-PW-LFRPKDVG  182 (397)
T ss_pred             ECCC------CHHHHHHhCCC-----CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccc-cc-ccCccccC
Confidence            8753      56788888865     478998887777  99999987765 7999999999999988 63 45655678


Q ss_pred             CcEEEEccccCCCCCCCc-eEEEEEe
Q 035915          305 PDFVLCNLDNTQNAQPSK-ITCLLIR  329 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G-iG~L~Vr  329 (344)
                      +|+++.|++|+ |+++.+ +|..++.
T Consensus       183 aDivv~S~sK~-~~g~g~~igg~v~~  207 (397)
T PRK05939        183 ASLVINSLSKY-IAGHGNALGGAVTD  207 (397)
T ss_pred             CEEEEecCeec-ccCCCCeEEEEEec
Confidence            99999999999 886632 4555554

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.47  E-value=3.3e-13  Score=128.85  Aligned_cols=169  Identities=18%  Similarity=0.155  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHH-HHHHHcCCcEEEEEeCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYV-REFASFKESKVILAPEAWL  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~i-r~la~~~G~kV~~vp~~~~  233 (344)
                      ...++.|+.+++++|  ++  +++||+|+|+|+.+++.++ +.+|+.++ +...|..... ...+...|++++.+|.+. 
T Consensus        32 ~~~~~l~~~~a~~~g--~~--~~~~~~~gt~a~~~~~~~l-~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-  105 (338)
T cd06502          32 PTTAKLEARAAELFG--KE--AALFVPSGTAANQLALAAH-TQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-  105 (338)
T ss_pred             HHHHHHHHHHHHHhC--CC--eEEEecCchHHHHHHHHHh-cCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-
Confidence            356788999999999  33  5999999999999988887 57888865 5555542111 112333699999998764 


Q ss_pred             CCccCHHHHHHHhhhcCC--CCCeeEEEEeCccc-cccccHH---HHH-HHHhCCcEEEecccccC-----cCCccCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCK--HTPKGLFSYPADIN-GTRYSMH---WIS-EAHRNSWHVLLDATALV-----VGEDRLNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~--~~~t~LVa~~avSN-G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~-----~G~~~LDLs  301 (344)
                       +.++.++|++++++..+  ..+++++.+...+| |.+++.+   +|. .++++|+++++|+++..     .|. .++.-
T Consensus       106 -~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~  183 (338)
T cd06502         106 -GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTY  183 (338)
T ss_pred             -CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHH
Confidence             56899999998864100  12478888887777 7665664   343 35889999999998742     032 22211


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ..++|++++|+||| ||.| |.++++.+++..+
T Consensus       184 ~~~~d~~~~s~sK~-~~~~-~g~~~~~~~~~~~  214 (338)
T cd06502         184 KSGVDSVSFCLSKG-GGAP-VGAVVVGNRDFIA  214 (338)
T ss_pred             HhcCCEEEEecccc-CCCc-cceEEECCHHHHH
Confidence            24789999999999 9877 4334555655443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02263 serine decarboxylase

Probab=99.47  E-value=3.2e-12  Score=130.82  Aligned_cols=172  Identities=9%  Similarity=-0.010  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-C-CCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-P-FFRGNFYMTIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~-~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      +++...+.-+.+++++|.+++++.=+||+|+|||+-+..... . +..+-.|.+..-|.+  +...++-.|++++.+|.+
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~S--v~KAa~llgi~~~~Vp~d  208 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDTL  208 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHH--HHHHHHhcCCcceEeccC
Confidence            455668889999999999865555699999999977643322 1 122322445544543  445556679999999997


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCc-----EEEecccccCcCCc-------
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSW-----HVLLDATALVVGED-------  296 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~-----~vlvDAaQa~~G~~-------  296 (344)
                      . +++++.++|++.+.++.  .++-+|+.++-++  |.+=||+.|+. ++++|+     ++|||||-.- ...       
T Consensus       209 ~-~g~mD~~aL~~aI~~d~--~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG-~~lPf~~~~~  284 (470)
T PLN02263        209 V-SGEIDCADFKAKLLANK--DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFG-LMMPFVKRAP  284 (470)
T ss_pred             C-CCcCcHHHHHHHHHhCC--CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchh-hHhhhccccc
Confidence            5 68999999999987532  1244555555443  99999998876 578886     9999998642 222       


Q ss_pred             cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          297 RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       297 ~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++|+.. ++|-+++++||| ++.|.++|++++|+...
T Consensus       285 ~~df~~-~vDSIsvD~HK~-l~~P~~cgvll~R~~~~  319 (470)
T PLN02263        285 KVTFKK-PIGSVSVSGHKF-VGCPMPCGVQITRMEHI  319 (470)
T ss_pred             ccCCCc-CccEEEECCccc-cCCCcCEEEEEEehhhH
Confidence            256554 499999999999 77799999999997644

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.47  E-value=2e-12  Score=129.97  Aligned_cols=160  Identities=10%  Similarity=-0.022  Sum_probs=121.2

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +......++.++++|+++|+.    ..+||+++++|+..++.++ +++|++++ +...|+  ...+...++..|++++.+
T Consensus        53 r~~~p~~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~~l-~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v  127 (418)
T TIGR01326        53 RLMNPTTDVLEQRIAALEGGV----AALAVASGQAAITYAILNL-AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFV  127 (418)
T ss_pred             CCCChhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEE
Confidence            333345678999999999973    4799999999999888766 56899865 454454  234455566789999888


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +.+      +.+++++.+++     ++++|.+...+|  |.++|++.|.+ ++++|+++++|.+++. |.....+ .+++
T Consensus       128 ~~~------d~~~l~~~l~~-----~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~-~~~~~~l-~~g~  194 (418)
T TIGR01326       128 DPD------DPEEFEKAIDE-----NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT-PYLCRPI-DHGA  194 (418)
T ss_pred             CCC------CHHHHHHhcCc-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCch-hhcCCch-hcCC
Confidence            753      56788888865     367777776666  99999988865 6999999999999998 7433233 4689


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeCC
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      |+++.|++|+ +|++ |  +|.++++++
T Consensus       195 Divv~S~sK~-l~g~-G~~lGg~v~~~~  220 (418)
T TIGR01326       195 DIVVHSATKY-IGGH-GTAIGGVIVDGG  220 (418)
T ss_pred             eEEEECcccc-ccCC-ccceEEEEEecc
Confidence            9999999999 8855 4  888888653

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.46  E-value=4.3e-12  Score=126.09  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ..++..+.+++++|++    .+++|+|+|+|+++++.++.+++||+|+ +...|...  ...+...|++++.++++..+.
T Consensus        32 ~~~~~e~~la~~~g~~----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~--~~~~~~~G~~~v~vd~d~~~~  105 (376)
T TIGR02379        32 FSRRCETWLENRTGTK----KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVST--ANAFVLRGAKIVFVDIRPDTM  105 (376)
T ss_pred             HHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH--HHHHHHcCCEEEEEecCCCcC
Confidence            3456667788888873    5999999999999999888788999964 56665522  122234699999999986556


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCC--CcEEEEcc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHR--PDFVLCNL  312 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~DFvv~S~  312 (344)
                      .++.+++++.+++     ++++|...+ .+|...|++.|. .|+++|+.++.|++|+. |.. .+-...+  .|+-+||+
T Consensus       106 ~~d~~~le~~i~~-----~tk~Iip~~-~~G~~~d~~~I~~la~~~~i~vIeDaa~~~-g~~-~~~~~~g~~~~~~~fSf  177 (376)
T TIGR02379       106 NIDETLIESAITH-----RTKAIVPVH-YAGVACDMDTIMALANKHQLFVIEDAAQGV-MST-YKGRALGSIGHLGTFSF  177 (376)
T ss_pred             CCCHHHHHHhcCc-----CceEEEEeC-CCCCccCHHHHHHHHHHCCCEEEEECcccc-CCc-cCCcccCCCCCEEEEeC
Confidence            7899999988865     467775432 269999997775 46999999999999999 864 3433333  39999999


Q ss_pred             ccC--CCCCCCceEEEEEeC
Q 035915          313 DNT--QNAQPSKITCLLIRK  330 (344)
Q Consensus       313 HK~--l~G~P~GiG~L~Vr~  330 (344)
                      |+.  +..++. .|+++.++
T Consensus       178 ~~~K~l~~g~~-gG~v~~~~  196 (376)
T TIGR02379       178 HETKNYTSGGE-GGALLIND  196 (376)
T ss_pred             CCCCcCcccCC-ceEEEECC
Confidence            873  232343 46666653

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.45  E-value=2.2e-12  Score=121.92  Aligned_cols=163  Identities=13%  Similarity=-0.012  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHcCCC----CCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          157 PEIQARNKVLKHCGLP----DDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~----p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.+.|+.++++++..    ....+++||+|+|++++.+..++. .+|+.++ ....|..  +...++..|.+++.+|.+
T Consensus        37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~~~~~~~~--~~~~~~~~~~~~~~i~~~  113 (350)
T cd00609          37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLVPDPTYPG--YEAAARLAGAEVVPVPLD  113 (350)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEEcCCCchh--HHHHHHHCCCEEEEEecc
Confidence            4455777777777754    112279999999999999999884 5688865 4444442  233455578999999987


Q ss_pred             CCCCccCH--HHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc---c---
Q 035915          232 WLDLRIKG--SQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED---R---  297 (344)
Q Consensus       232 ~~~g~i~~--~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~---~---  297 (344)
                      +. +..+.  +.+.....+     ++++|.+++.+|  |..+|++.+.    .++++|+++++|++++. +..   .   
T Consensus       114 ~~-~~~~~~~~~~~~~~~~-----~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~-~~~~~~~~~~  186 (350)
T cd00609         114 EE-GGFLLDLELLEAAKTP-----KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE-LVYDGEPPPA  186 (350)
T ss_pred             cc-cCCccCHHHHHhhcCc-----cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhh-ceeCCccccc
Confidence            64 33333  444444332     477888887665  9999987664    46899999999999986 432   1   


Q ss_pred             -CCCCCCCCcEEEEccccCCCC-CCCceEEEEEeC
Q 035915          298 -LNLALHRPDFVLCNLDNTQNA-QPSKITCLLIRK  330 (344)
Q Consensus       298 -LDLs~l~~DFvv~S~HK~l~G-~P~GiG~L~Vr~  330 (344)
                       ......+.|+++.|+||+ ++ ++.++|++++++
T Consensus       187 ~~~~~~~~~~~~~~s~~K~-~~~~g~~~G~i~~~~  220 (350)
T cd00609         187 LALLDAYERVIVLRSFSKT-FGLPGLRIGYLIAPP  220 (350)
T ss_pred             ccCcCccCcEEEEeecccc-cCCcccceEEEecCH
Confidence             234456789999999999 76 344689999887

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.45  E-value=1.7e-12  Score=129.33  Aligned_cols=157  Identities=11%  Similarity=-0.055  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCH--HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEEL--DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~--~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....+.|+++|++.|++.   .++|+ |+++|+.+++.++ +.+||+++. ...|..  ..+..+++..|+++..++.  
T Consensus        61 p~~~~Le~~lA~~~g~~~---~i~~~-sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~--  133 (388)
T PRK07811         61 PTRTALEEQLAALEGGAY---GRAFS-SGMAATDCLLRAV-LRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL--  133 (388)
T ss_pred             ccHHHHHHHHHHHhCCCc---eEEeC-CHHHHHHHHHHHH-hCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC--
Confidence            456789999999999863   46665 5589999999888 689999654 444542  2233334456888877664  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                          .+.++|++++++     ++++|.+...+|  |.+.|++.|.+ ++++|+++++|.+++. +.....+ .+++|+++
T Consensus       134 ----~d~e~l~~~i~~-----~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~-~~~~~p~-~~gaDivv  202 (388)
T PRK07811        134 ----SDLDAVRAAITP-----RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFAS-PYLQQPL-ALGADVVV  202 (388)
T ss_pred             ----CCHHHHHHhcCc-----CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCc-cccCCch-hhCCcEEE
Confidence                256788888865     478888876666  99999988765 6999999999999998 7543333 36899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeCC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      +|++|+ +++|.+  .|+++++++
T Consensus       203 ~S~sK~-l~g~~~~~gG~vv~~~~  225 (388)
T PRK07811        203 HSTTKY-IGGHSDVVGGALVTNDE  225 (388)
T ss_pred             ecCcee-ecCCCCcEEEEEEECCH
Confidence            999999 887855  577777643

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.45  E-value=1.1e-12  Score=130.88  Aligned_cols=182  Identities=13%  Similarity=0.024  Sum_probs=133.8

Q ss_pred             hHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHH
Q 035915          135 EPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNFYMTIIGEELDY  213 (344)
Q Consensus       135 ~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~  213 (344)
                      .++++.+.+.+.++. +....+.+.++++.+.++|+.+ ++|+|+| ++++|.++..+..++--++|+.++.. +.=..-
T Consensus        19 ~~~~~~~~~~~~~HR-s~~F~~i~~e~~~~L~~l~~~~-~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~-g~FG~r   95 (374)
T TIGR01365        19 SIEELKNAPLGRSHR-SKLGKEKLAEAIKKTREMLGVP-ADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAW-ESFGKG   95 (374)
T ss_pred             hHHHHhhhhcccCcC-CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEE-CHHHHH
Confidence            355665555555433 3455667899999999999974 4566655 89999999998888732467765432 211333


Q ss_pred             HH-HHHHcCCc-EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccHHHHHHHHhCCcEEEeccc
Q 035915          214 VR-EFASFKES-KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSMHWISEAHRNSWHVLLDAT  289 (344)
Q Consensus       214 ir-~la~~~G~-kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl~~Ia~ar~~g~~vlvDAa  289 (344)
                      |. +.|++.|+ ++..+...| +..++.++++.  .       .. |++.|.-  +|+++|++.+.... ++++++|||+
T Consensus        96 ~~~eia~~~g~~~v~~l~~~~-g~~~~~~~ve~--~-------~~-v~~vhnETSTGv~npv~~i~~~~-~~~lliVDav  163 (374)
T TIGR01365        96 WVTDVTKQLKLPDVRVLEAEY-GKLPDLKKVDF--K-------ND-VVFTWNGTTSGVRVPNGDFIPAD-REGLTICDAT  163 (374)
T ss_pred             HHHHHHHhcCCCCcEEEcCCC-CCCCCHHHcCC--C-------CC-EEEecCCCchheecccccccccc-CCCcEEEEcc
Confidence            44 77888899 588887777 34678877752  1       12 4566654  49999997654322 4899999999


Q ss_pred             ccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          290 ALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       290 Qa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .++ |..++|++.  +|+++.+.+|. +|.|.|++++++++++.+.
T Consensus       164 Ss~-g~~~l~~d~--iDv~~tgsQK~-L~~ppGls~v~vs~~Al~~  205 (374)
T TIGR01365       164 SAA-FAQDLDYHK--LDVVTFSWQKV-LGGEGAHGMLILSPRAVAR  205 (374)
T ss_pred             chh-cCCCCChhH--CcEEEEechhc-cCCCCceEEEEECHHHHHH
Confidence            999 999999994  99999999999 8889999999999988765

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.45  E-value=2.6e-12  Score=128.56  Aligned_cols=159  Identities=9%  Similarity=-0.038  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++++|+++|+++.   ++ +++++.|+..+..++ +++||+++. ...+.  ...++.++...|++++.++. 
T Consensus        64 ~p~~~~Le~~lA~l~G~~~~---~~-~~sG~~Ai~~~l~~~-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-  137 (398)
T PRK07504         64 NPTVDMFEKRMCALEGAEDA---RA-TASGMAAVTAAILCQ-VKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-  137 (398)
T ss_pred             CchHHHHHHHHHHHhCCCee---eE-ecCHHHHHHHHHHHH-hCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-
Confidence            34568899999999999643   44 667788887655543 578999754 44444  22344555667999888752 


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                           ++.+++++++++     +|++|.+...+|  |.+.|++.|.+ ++++|+++++|++|+. +...-.+ ++++|++
T Consensus       138 -----~d~e~l~~ai~~-----~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~-~~~~~~~-~~gaDiv  205 (398)
T PRK07504        138 -----LDLDNWEKAVRP-----NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFAT-PLFQKPL-ELGAHIV  205 (398)
T ss_pred             -----CCHHHHHHhcCc-----CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccc-cccCCch-hhCCCEE
Confidence                 467888888865     478999887777  99999988865 6899999999999987 6543222 4689999


Q ss_pred             EEccccCCCCCCC-ceEEEEE-eCCC
Q 035915          309 LCNLDNTQNAQPS-KITCLLI-RKKS  332 (344)
Q Consensus       309 v~S~HK~l~G~P~-GiG~L~V-r~~~  332 (344)
                      ++|+||+ |++|. .+|.+++ +++.
T Consensus       206 v~S~sK~-l~g~g~~~GG~vv~~~~~  230 (398)
T PRK07504        206 VYSATKH-IDGQGRCLGGVVLSDKAW  230 (398)
T ss_pred             Eeecccc-ccCCccceEEEEEeCcHH
Confidence            9999999 87663 3654444 4443

>PLN02452 phosphoserine transaminase

Probab=99.45  E-value=3.8e-13  Score=133.66  Aligned_cols=166  Identities=13%  Similarity=0.043  Sum_probs=117.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEe-CCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFT-PNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFT-snaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      +......++++|+.+.+++++ |++|+|+|. .|+|.++..+..++- .+|+.+. ...+.=..-+...|++.|...+..
T Consensus        47 s~~f~~i~~~~~~~L~~l~~~-p~~y~v~~l~Gsgt~~~ea~~~nl~-~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~  124 (365)
T PLN02452         47 GKEFLSIIQKAEADLRELLDI-PDNYEVLFLQGGASTQFAAIPLNLC-KPGDKADFVVTGSWSKKAAKEAKKYCKTNVIA  124 (365)
T ss_pred             chHHHHHHHHHHHHHHHHhCC-CCCceEEEEeCccHHHHHHHHHhcC-CCCCeEEEEECCHHHHHHHHHHHHhCCCcEEE
Confidence            344456789999999999998 467888888 799999999988873 4666632 233311333444566667544333


Q ss_pred             eCCCC--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccc-ccHHHHHHHHhCCcEEEecccccCcCCccCCCCCC
Q 035915          229 PEAWL--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR-YSMHWISEAHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       229 p~~~~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i-~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      -..+.  ....+.+++    ..   +.....|.+++..+  |+. .|++.+.     +++++|||+|++ |+.|+|++++
T Consensus       125 ~~~~~~~~~~~~~~~~----~~---~~~~~~v~~~hnETstGv~~~~~~~i~-----~~~lvVDa~Ss~-g~~pidv~~~  191 (365)
T PLN02452        125 SGKDEKYTKIPSVSEW----EL---TPDAKFVHICANETIHGVEFKDYPDVG-----NVPLVADMSSNF-LSKPVDVSKY  191 (365)
T ss_pred             ecCCCCCCCCCChHHc----CC---CCCCcEEEECCCCCCCcEecCcccccC-----CCeEEEECCccc-cCcccCHHHc
Confidence            11111  112344443    11   12367888888764  995 7776653     389999999999 9999999999


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++||  +|+||. +| |.|+|++++|+++++.
T Consensus       192 ~v~~--~saqK~-lG-P~Gl~~v~vr~~~l~~  219 (365)
T PLN02452        192 GVIY--AGAQKN-VG-PSGVTIVIIRKDLIGN  219 (365)
T ss_pred             CEEE--Eecccc-cC-CCCeEEEEEcHHHHhh
Confidence            9988  599998 87 9999999999988765

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.44  E-value=3.5e-12  Score=128.08  Aligned_cols=156  Identities=15%  Similarity=0.052  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++++|++.|+. +  . ++++|+++|+++++.++ +++||+++. ...+.  ...++.+++..|+++..++.. 
T Consensus        60 p~~~~Le~~lA~l~g~~-~--~-v~~~sG~~Ai~~~l~al-l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~-  133 (405)
T PRK08776         60 PTRDLLGEALAELEGGA-G--G-VITATGMGAINLVLNAL-LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLT-  133 (405)
T ss_pred             hHHHHHHHHHHHHhCCC-c--e-EEEcCHHHHHHHHHHHH-hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCC-
Confidence            34567889999999974 2  3 45555689999999888 789998664 33343  223455566678888877642 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.++|++.+++     ++++|.+...+|  |.+.+++.|.+ ++++|+++++|.+++. +...-.+ .+++|+++
T Consensus       134 -----d~~~l~~~i~~-----~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~-~~~~~pl-~~gaDivv  201 (405)
T PRK08776        134 -----DPRSLADALAQ-----SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS-PALQKPL-EFGADLVL  201 (405)
T ss_pred             -----CHHHHHHhcCc-----CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc-cccCCcc-cccCCEEE
Confidence                 56778887764     478888876666  99999987765 6999999999999998 6543233 36899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      +|+||+ +++|.+  .|++++++
T Consensus       202 ~S~tK~-l~g~~~~~~G~vv~~~  223 (405)
T PRK08776        202 HSTTKY-INGHSDVVGGAVVARD  223 (405)
T ss_pred             ecCcee-ecCCCCceEEEEEeCC
Confidence            999999 887865  46666654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.44  E-value=3.7e-12  Score=127.11  Aligned_cols=156  Identities=13%  Similarity=0.040  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...+..++++|++.|..    ++++|+|+++|+.+++.++ +++||+++ ....|+  ...+..++...|+++..++.  
T Consensus        52 pt~~~L~~~lA~l~g~~----~~i~~~sg~~Ai~~~l~~l-~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~--  124 (386)
T PRK08045         52 PTRDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ--  124 (386)
T ss_pred             ccHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-cCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC--
Confidence            35677899999999962    4999999999999998876 57899865 444455  22344555555667776642  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                          .+.+++++++++     ++++|.+...+|  |.++|++.|.+ ++++|+++++|.+++. +.....+ .+++|+++
T Consensus       125 ----~d~e~l~~~l~~-----~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~-~~~~~pl-~~gaDivv  193 (386)
T PRK08045        125 ----GDEQALRAALAE-----KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS-PALQNPL-ALGADLVL  193 (386)
T ss_pred             ----CCHHHHHHhccc-----CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc-cccCCch-hhCCCEEE
Confidence                356788888764     478888887776  99999987765 6889999999999988 7554344 46899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      .|+||| ++||.+  .|++++++
T Consensus       194 ~S~tK~-l~G~~d~~~G~vi~~~  215 (386)
T PRK08045        194 HSCTKY-LNGHSDVVAGVVIAKD  215 (386)
T ss_pred             eeccee-ccCCCCceeEEEEeCc
Confidence            999999 877876  56665543

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.43  E-value=4.5e-12  Score=126.26  Aligned_cols=156  Identities=13%  Similarity=0.017  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++.+|++.|+  +  .+++|+|+++|+.+++.++ +++||+++ ....|.  ...+..++...|+++..++.  
T Consensus        51 p~~~~le~~lA~l~g~--~--~v~~~~gg~~Ai~~~l~al-l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~--  123 (382)
T TIGR02080        51 PTRDLLQQALAELEGG--A--GAVVTNTGMSAIHLVTTAL-LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ--  123 (382)
T ss_pred             chHHHHHHHHHHHhCC--C--cEEEEcCHHHHHHHHHHHH-cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC--
Confidence            3457788899999995  3  5999999999999999988 78899965 344454  22344555555777776642  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                          .+.+++++++++     ++++|.+...+|  |.++|++.|.+ +|++|+++++|.+++. +...-++ .+++|+++
T Consensus       124 ----~d~~~l~~ai~~-----~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~-~~~~~pl-~~gaDivv  192 (382)
T TIGR02080       124 ----GDEQALRAALAQ-----KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS-PALQNPL-ALGADLVL  192 (382)
T ss_pred             ----CCHHHHHHhcCc-----CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhCCCEEE
Confidence                256778888865     478888876666  99999988865 6899999999999987 6543333 35789999


Q ss_pred             EccccCCCCCCCc--eEEEEEeC
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      .|++|| ++++.+  .|++.+++
T Consensus       193 ~S~sK~-l~G~~~~~~G~i~~~~  214 (382)
T TIGR02080       193 HSCTKY-LNGHSDVIAGAVIAKD  214 (382)
T ss_pred             eeccee-ccCCCCceeEEEEeCC
Confidence            999999 776766  66666644

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.43  E-value=4e-12  Score=126.74  Aligned_cols=155  Identities=15%  Similarity=0.019  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++++|+++|++    +++.|++++.|+.+++.++ +++||+++ +...|.  ...++.+ +..|+++..++.  
T Consensus        53 p~~~~lE~~lA~l~g~~----~~l~~~sG~~Ai~~~l~~l-l~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~--  124 (385)
T PRK08574         53 PTLRPLEEALAKLEGGV----DALAFNSGMAAISTLFFSL-LKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP--  124 (385)
T ss_pred             ccHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC--
Confidence            35677999999999974    2566678899999888877 67899865 444454  2334443 556888876542  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.++|++++++.    ++++|.+...+|  |.++|++.|.+ +|++|+++++|.+|+. |...-.+ .+++|+++
T Consensus       125 -----d~~~l~~~i~~~----~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~-~~~~~~l-~~GaDivv  193 (385)
T PRK08574        125 -----STEDIIEAIKEG----RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT-PLLYRPL-RHGADFVV  193 (385)
T ss_pred             -----CHHHHHHhcCcc----CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc-cccCChh-hhCCcEEE
Confidence                 356788887641    478888887776  99999987754 6999999999999998 7542223 46899999


Q ss_pred             EccccCCCCCCCc-e-EEEEEeC
Q 035915          310 CNLDNTQNAQPSK-I-TCLLIRK  330 (344)
Q Consensus       310 ~S~HK~l~G~P~G-i-G~L~Vr~  330 (344)
                      +|++|+ +++|.+ + |++++++
T Consensus       194 ~S~sK~-l~g~~d~~gG~vi~~~  215 (385)
T PRK08574        194 HSLTKY-IAGHNDVVGGVAVAWS  215 (385)
T ss_pred             eeCcee-ecCCCCceeEEEEECc
Confidence            999999 887854 3 5466543

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.43  E-value=7.7e-12  Score=125.30  Aligned_cols=163  Identities=13%  Similarity=0.009  Sum_probs=117.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.++++|+++|+. +  .|+| +++++|+.+++.++ +++||+++ +...|.  ...+..+++..|+++.
T Consensus        58 y~r~~~p~~~~le~~lA~l~g~~-~--~i~~-ssG~~Ai~~~l~al-l~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~  132 (398)
T PRK08249         58 YSRNTNPTVQAFEEKVRILEGAE-A--ATAF-STGMAAISNTLYTF-LKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVT  132 (398)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC-e--EEEe-CChHHHHHHHHHHh-cCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEE
Confidence            44555567799999999999984 2  3554 55578999888776 67899865 455555  2234555666799887


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .++.      .+.+++++++++     +|++|.+...+|  |.++|++.|.+ +|++|+.+++|.+++. +...-.+ .+
T Consensus       133 ~vd~------~d~e~l~~~i~~-----~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~-~~~~~~l-~~  199 (398)
T PRK08249        133 LCET------GDHEQIEAEIAK-----GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFAT-PINQNPL-AL  199 (398)
T ss_pred             EcCC------CCHHHHHHhcCC-----CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCc-cccCCch-hh
Confidence            7653      367788888865     478888876666  99999987765 6999999999999997 5432223 36


Q ss_pred             CCcEEEEccccCCCCCCCc-e-EEEEEeCC
Q 035915          304 RPDFVLCNLDNTQNAQPSK-I-TCLLIRKK  331 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G-i-G~L~Vr~~  331 (344)
                      ++|+++.|++|+ +|++.. + |+++.+++
T Consensus       200 ~~Divv~S~sK~-l~g~~~~~gG~vv~~~~  228 (398)
T PRK08249        200 GADLVIHSATKF-LSGHADALGGVVCGSKE  228 (398)
T ss_pred             CCCEEeccCcee-cCCCCCceEEEEECCHH
Confidence            899999999999 886542 4 44444443

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.43  E-value=1.1e-12  Score=134.62  Aligned_cols=175  Identities=14%  Similarity=0.004  Sum_probs=119.0

Q ss_pred             ChhhhhhH-HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC----CC------------------------
Q 035915          149 FPGSFISI-PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF----FR------------------------  199 (344)
Q Consensus       149 ~~g~~as~-~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~----~~------------------------  199 (344)
                      |.|-..-. ...-|.+++.++||++-.  + |=--+++.|+..|..++--    .+                        
T Consensus        87 y~g~~~~d~ie~l~~~ra~~lf~a~~a--n-vqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~  163 (493)
T PRK13580         87 YAGCQNVDTVEWEAAEHAKELFGAEHA--Y-VQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAE  163 (493)
T ss_pred             cCCCchHHHHHHHHHHHHHHHhCCCcc--c-ccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhcc
Confidence            34444333 447889999999998643  2 3334666676666655421    11                        


Q ss_pred             --CCeEEEc-CCcC---HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHH
Q 035915          200 --GNFYMTI-IGEE---LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMH  272 (344)
Q Consensus       200 --Gd~ivS~-~eH~---~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~  272 (344)
                        ||.|++. .+|.   ......-.......+...+++..++.+|.+++++.+++     .+.++++.+.|| |...|++
T Consensus       164 ~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~-----~~plvii~g~S~~~~~~dl~  238 (493)
T PRK13580        164 LGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE-----FKPLILVAGYSAYPRRVNFA  238 (493)
T ss_pred             CCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhh-----cCCEEEEeCccccCCCcCHH
Confidence              6777643 3332   11110000111244555566655688999999999976     367888889997 8899998


Q ss_pred             HHHH-HHhCCcEEEecccccCcCCccCCCC------CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          273 WISE-AHRNSWHVLLDATALVVGEDRLNLA------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       273 ~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .|.+ ++++|++++||++|++ |++..++.      ..++||+++|+||+ |+||.| |++++++++.+
T Consensus       239 ~i~eia~~~gA~L~VD~AH~~-Gligg~~~~~~~~~~~~~D~vtgT~hKa-L~GP~G-G~I~~~~~l~~  304 (493)
T PRK13580        239 KLREIADEVGAVLMVDMAHFA-GLVAGKVFTGDEDPVPHADIVTTTTHKT-LRGPRG-GLVLAKKEYAD  304 (493)
T ss_pred             HHHHHHHHcCCEEEEECchhh-ceeccccchhhcCCCCCCcEEEeCChhh-ccCCCe-EEEEecHHHHH
Confidence            8865 6899999999999999 99987662      13799999999999 655986 88998877543

>PLN02721 threonine aldolase

Probab=99.42  E-value=1.3e-12  Score=125.59  Aligned_cols=167  Identities=13%  Similarity=0.094  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHH--HHHHcCCcEEEEEeCCCCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVR--EFASFKESKVILAPEAWLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir--~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+.|+.+++++|++    .++||+|+|+++.++...+...+||+++ ....|... +.  ..+...|++++.+|.+. +
T Consensus        42 ~~~l~~~la~~~~~~----~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~-~  115 (353)
T PLN02721         42 ALRLEEEMAKIFGKE----AALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHL-YENGGISTLGGVHPRTVKNNE-D  115 (353)
T ss_pred             HHHHHHHHHHHhCCc----eeEEecCccHHHHHHHHHHccCCCCeEEEcCccceeh-hcccchhhhcCceeEecCCCc-C
Confidence            578999999999984    2678888888876666655433899865 44444311 11  14556799999998764 4


Q ss_pred             CccCHHHHHHHhhhcCC--CCCeeEEEEeCcc-c--cccccH---HHHH-HHHhCCcEEEecccccCcCCc---cCCCC-
Q 035915          235 LRIKGSQLSQYFRRKCK--HTPKGLFSYPADI-N--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGED---RLNLA-  301 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~--~~~t~LVa~~avS-N--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~~---~LDLs-  301 (344)
                      +.++.++|++.+++...  ..++++|.+...+ |  |..+|.   +.|. .++++|+++++|++++. +..   ..+.. 
T Consensus       116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~-~~~~~~~~~~~~  194 (353)
T PLN02721        116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIF-NASVALGVPVHR  194 (353)
T ss_pred             CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhh-cchhhhCCCHHH
Confidence            67899999998873100  0247788886543 4  788885   4444 46899999999999986 531   12222 


Q ss_pred             -CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          302 -LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       302 -~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                       ..++|++++|+||| |++|.| |+++.+++..
T Consensus       195 ~~~~~d~~~~s~sK~-l~~~~G-~~~~~~~~~~  225 (353)
T PLN02721        195 LVKAADSVSVCLSKG-LGAPVG-SVIVGSKSFI  225 (353)
T ss_pred             HhhhCCEEEEecccc-cCCcee-eEEecCHHHH
Confidence             23799999999999 887744 3455555443

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.42  E-value=3.3e-12  Score=125.39  Aligned_cols=165  Identities=18%  Similarity=0.178  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      ...+.|+.+++++|++++  +|+||+|+|+|+++++.++ ..+|+.++ ....+.  .....++..|++++.+|.+..  
T Consensus        67 g~~~lr~~ia~~l~~~~~--~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~p~y~--~~~~~~~~~g~~~~~v~~~~~~~  141 (380)
T PRK06225         67 GFPELRELILKDLGLDDD--EALITAGATESLYLVMRAF-LSPGDNAVTPDPGYL--IIDNFASRFGAEVIEVPIYSEEC  141 (380)
T ss_pred             chHHHHHHHHHhcCCCCC--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCc--chHHHHHHhCceEEeeccccccC
Confidence            367799999999999876  7999999999999999887 46788754 343333  123445567999999886421  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEeccccc---CcCCccC-CCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATAL---VVGEDRL-NLALH  303 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa---~~G~~~L-DLs~l  303 (344)
                      +..++.+.+++.+++     +++++.+...+|  |..++.+   .|. .|+++|+++++|.++.   . ++.++ .+. .
T Consensus       142 ~~~~d~~~l~~~~~~-----~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~-~  214 (380)
T PRK06225        142 NYKLTPELVKENMDE-----NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYA-P  214 (380)
T ss_pred             CccCCHHHHHhhcCC-----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcC-C
Confidence            246888999888764     366777665555  9998853   333 3588999999999863   2 32221 111 1


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      .-.+++.|+.|+ || +.|  +|++++++++.+.
T Consensus       215 ~~~i~~~s~SK~-~g-~~G~RiG~i~~~~~l~~~  246 (380)
T PRK06225        215 EHTVTSYSFSKI-FG-MAGLRIGAVVATPDLIEV  246 (380)
T ss_pred             CCEEEEeechhh-cC-CccceeEEEecCHHHHHH
Confidence            335667788899 87 447  7999997765543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.42  E-value=4.1e-12  Score=126.09  Aligned_cols=161  Identities=10%  Similarity=0.013  Sum_probs=118.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEe
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAP  229 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp  229 (344)
                      .......+.++++++++|++    .+++++|+++|+.+++.++ +++||+++. ...|.  ...+..++++.|+++..++
T Consensus        51 ~~~p~~~~le~~la~l~g~~----~~~~~~sG~~Ai~~al~al-~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~  125 (380)
T TIGR01325        51 YANPTVAAFEERIAALEGAE----RAVATATGMSAIQAALMTL-LQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVD  125 (380)
T ss_pred             CCCchHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEEC
Confidence            33445788999999999983    3788999999999888777 678998654 43344  2234555666799998887


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCc
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~D  306 (344)
                      .+      +.+++++.+++     ++++|.+...+|  |.+.|++.|.+ +|++|+++++|.+++. +...-.+ .+++|
T Consensus       126 ~~------d~~~l~~~i~~-----~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~-~~~~~pl-~~g~D  192 (380)
T TIGR01325       126 PT------DLNAWEAAVKP-----NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFAT-PVLQQPL-KLGAD  192 (380)
T ss_pred             CC------CHHHHHHhcCC-----CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhCCC
Confidence            54      45678777754     477888876666  99999988865 6999999999999975 4322222 35899


Q ss_pred             EEEEccccCCCCCCC-ce-EEEEEeCCC
Q 035915          307 FVLCNLDNTQNAQPS-KI-TCLLIRKKS  332 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~-Gi-G~L~Vr~~~  332 (344)
                      ++++|++|+ ++++. .+ |+++.+++.
T Consensus       193 ivv~S~sK~-l~g~g~~~gG~vv~~~~~  219 (380)
T TIGR01325       193 VVVYSATKH-IDGQGRVMGGVIAGSEEL  219 (380)
T ss_pred             EEEeeccce-ecCCCCeEEEEEEeCHHH
Confidence            999999999 88663 24 555555544

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.41  E-value=4e-12  Score=123.74  Aligned_cols=199  Identities=16%  Similarity=0.118  Sum_probs=140.9

Q ss_pred             CCcCCCCCC---cccccchHHHHHHhhccCCC--ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHH-Hh
Q 035915          120 PSFGSNLPD---LDRTQLEPSRLLDILTKKSS--FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLV-GE  193 (344)
Q Consensus       120 ~~~Ga~lp~---~s~v~~~~~~L~~~L~gnss--~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlv-a~  193 (344)
                      .|.|+- |+   ....+.+.++|.+.+.+.-.  ....+.  .-+..-.++|.++|+.++  +||.|.++|--++.+ +.
T Consensus        38 nSLGa~-p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~--lp~~lgdklApLiGA~~~--Evvv~dtts~nl~k~L~a  112 (407)
T COG3844          38 NSLGAR-PRAVTARLQQVATDEWGEGLIRSWNKAKADWFD--LPERLGDKLAPLIGARAG--EVVVTDTTSINLFKVLAA  112 (407)
T ss_pred             cccccC-chHHHHHHHHHHHHHHHhhhhhhhcccCCchhh--chhHHHHHhhhhhcCCCC--ceEEeCCcchHHHHHHHH
Confidence            347777 53   33456666777776544311  111111  225566789999999877  699998888776654 44


Q ss_pred             hCCCCCCCeEEEcCCcC--HH-H-HHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccc
Q 035915          194 SYPFFRGNFYMTIIGEE--LD-Y-VREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGT  267 (344)
Q Consensus       194 sl~~~~Gd~ivS~~eH~--~~-~-ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~  267 (344)
                      .|..++|+.++..-.++  .+ . ...++.-.+..     .+- .+.+.+.++.+.++.     .+.+|.+++++  +|.
T Consensus       113 alr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~-~~~~~P~~~~~~~~d-----d~AvV~L~~V~y~TGq  181 (407)
T COG3844         113 ALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDL-EGVIAPRALEEAITD-----DVAVVLLSHVNYKTGQ  181 (407)
T ss_pred             HhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccc-eeeeChHHHHHhhcc-----ceEEEEeccccccccc
Confidence            67777787754332222  22 1 12222222211     111 245566688888875     58999999998  499


Q ss_pred             cccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          268 RYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       268 i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .+++..|. .+|++|+++.-|-+|++ |..|+||...++||-+.+.||.|-|||-+.++|||.++..+.
T Consensus       182 l~dm~aiT~~AH~~galv~wDLAHsa-Gavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~  249 (407)
T COG3844         182 LLDMRAITALAHQHGALVGWDLAHSA-GAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRER  249 (407)
T ss_pred             eeeHHHHHHHHHhcCceEEeehhccc-CCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccc
Confidence            99998885 57999999999999999 999999999999999999999999999999999999887776

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.41  E-value=1.9e-12  Score=140.85  Aligned_cols=164  Identities=15%  Similarity=0.064  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHH-H---HHHHHhhCCCCCC----Ce-EEEcCCcCHHHHHHHHHcCCcEEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRD-A---MMLVGESYPFFRG----NF-YMTIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTe-A---lnlva~sl~~~~G----d~-ivS~~eH~~~~ir~la~~~G~kV~  226 (344)
                      +.+.+-.+.+++++|.+    .+-|-+|++. |   .-++++.|.-.+|    +. +++..+|+.|...  +...|++|+
T Consensus       543 q~i~elq~~l~eLtGmd----~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas--a~~~GieVv  616 (954)
T PRK12566        543 AMIDELEAWLCAITGFD----AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS--AQMAGMRVV  616 (954)
T ss_pred             HHHHHHHHHHHHHHCCC----eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH--HHHCCCEEE
Confidence            35677789999999985    2566665444 2   2233444422222    33 4677778766432  455799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cc-cccHHHHH-HHHhCCcEEEecccccCcCCccCC-CCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GT-RYSMHWIS-EAHRNSWHVLLDATALVVGEDRLN-LAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~-i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LD-Ls~  302 (344)
                      ++|.+. +|.+|.++|++++++.  ..++..|.++..++ |. ..|++.|. .+|++|++|++|++|.+ ++..++ ..+
T Consensus       617 ~Vp~D~-~G~iDle~L~a~I~~~--~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~-a~~~l~~Pg~  692 (954)
T PRK12566        617 IVECDP-DGNVDLDDLKAKAAAA--GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLN-AQVGLARPAD  692 (954)
T ss_pred             EeccCC-CCCcCHHHHHHHhhcc--CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChh-hccCCCChhh
Confidence            999985 6899999999999732  12355555555554 44 46687775 46999999999999999 999888 478


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      +++||+++++||| ||+|.|.|++|+..
T Consensus       693 ~GADi~~~s~HKt-f~~P~G~GGP~vG~  719 (954)
T PRK12566        693 IGADVSHMNLHKT-FCIPHGGGGPGMGP  719 (954)
T ss_pred             cCCCEEEecCCcc-cCcCccCCCCccch
Confidence            9999999999999 98899999998877

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.41  E-value=8.3e-12  Score=123.13  Aligned_cols=161  Identities=12%  Similarity=-0.034  Sum_probs=120.4

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++......++.++++++++|+.    ..++++++++|+.+++.++ +++|++++ ....|+  ...+..+++..|+++..
T Consensus        35 ~r~~~p~~~~le~~la~l~g~~----~a~~~~sG~~Ai~~~l~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~  109 (369)
T cd00614          35 SRIGNPTVDALEKKLAALEGGE----AALAFSSGMAAISTVLLAL-LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTF  109 (369)
T ss_pred             ECCCChhHHHHHHHHHHHHCCC----CEEEEcCHHHHHHHHHHHH-cCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence            3334456788889999999974    3677788899999998887 57899865 444555  23445556677999888


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++.+      +.+++++.+++     ++++|.+...+|  |.+.|++.|.+ +|++|+++++|.+++. |... ..-.++
T Consensus       110 v~~~------d~~~l~~~i~~-----~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~-~~~~-~~~~~g  176 (369)
T cd00614         110 VDPD------DPEALEAAIKP-----ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFAT-PYLQ-RPLELG  176 (369)
T ss_pred             eCCC------CHHHHHHhcCC-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-hhcC-ChhhhC
Confidence            8754      36678888764     477888877766  99999988865 6999999999999998 7541 112358


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      +|+++.|++|+ +|+|..  .|+++.++
T Consensus       177 ~Divv~S~tK~-l~g~~~~~gG~v~~~~  203 (369)
T cd00614         177 ADIVVHSATKY-IGGHSDVIAGVVVGSG  203 (369)
T ss_pred             CcEEEecccee-ccCCCCceEEEEEeCc
Confidence            99999999999 886632  67787766

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.41  E-value=4.7e-12  Score=125.93  Aligned_cols=160  Identities=11%  Similarity=0.001  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++.+|+++|+. +   .++++|++.|+..++.++ +++||+++.. ..|.  ...+..++...|+++..++.. 
T Consensus        61 pt~~~Le~~lA~l~G~~-~---al~~~sG~~Ai~~~l~al-~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~-  134 (386)
T PRK06767         61 PTVKLFEERMAVLEGGE-E---ALAFGSGMAAISATLIGF-LKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME-  134 (386)
T ss_pred             cchHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC-
Confidence            34677899999999974 2   455666678998888777 6789997643 3344  223444455567777666532 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.+++++++++     ++++|.+...+|  |.+.|++.|.+ ++++|+++++|.+++. +....++. .++|+++
T Consensus       135 -----d~~~l~~~i~~-----~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~-~~~~~pl~-~g~Div~  202 (386)
T PRK06767        135 -----TEADIENKIRP-----NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCS-PYLQRPLE-LGCDAVV  202 (386)
T ss_pred             -----CHHHHHHhhCc-----CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcc-cccCCchh-cCCcEEE
Confidence                 56778887764     478888877776  99999987765 6899999999999987 65544443 5899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +|++|+ ++++.+  .|+++.+++..+
T Consensus       203 ~S~sK~-l~g~g~~~gG~v~~~~~~i~  228 (386)
T PRK06767        203 HSATKY-IGGHGDVVAGVTICKTRALA  228 (386)
T ss_pred             ecCcce-ecCCCCceeEEEEeChHHHH
Confidence            999999 887744  588887776443

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.41  E-value=7.4e-12  Score=125.21  Aligned_cols=161  Identities=14%  Similarity=0.026  Sum_probs=120.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++......++.++++++++|++    .+++|+|+|+|+++++.++ +++||+|+ +...|.  ...+..+++..|+++..
T Consensus        60 ~r~~~pt~~~Le~~lA~l~g~~----~~l~~~sgt~Ai~~~l~al-~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~  134 (394)
T PRK07050         60 GLHATPTSLALAQRLAEIEGGR----HALLQPSGLAAISLVYFGL-VKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRF  134 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC----eEEEeccHHHHHHHHHHHH-hCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEE
Confidence            3444445688889999999973    5999999999999999888 78999965 455555  22344556777999988


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++..      +.+++++.+++     +|++|.+...+|  |.+.+++.|.+ ++++|+++++|++++. |.. .+--+++
T Consensus       135 vd~~------~~~~l~~~i~~-----~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~-~~~-~~~l~~G  201 (394)
T PRK07050        135 YDPL------IGAGIADLIQP-----NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSA-GLA-FKPFEHG  201 (394)
T ss_pred             ECCC------CHHHHHHhcCC-----CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccc-ccc-cCHHHcC
Confidence            7643      23568877765     478888876666  99999988865 6999999999999998 753 2222357


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      +|+++.|+.|+ +++..+  .|++++++
T Consensus       202 aDi~v~S~tK~-~~g~~~~~gG~v~~~~  228 (394)
T PRK07050        202 VDISVQALTKY-QSGGSDVLMGATITAD  228 (394)
T ss_pred             CeEEEEECCce-ecCCCCeeEEEEEECC
Confidence            89999999999 765544  56666644

>PRK06460 hypothetical protein; Provisional

Probab=99.41  E-value=4.1e-12  Score=126.15  Aligned_cols=165  Identities=11%  Similarity=-0.022  Sum_probs=117.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcC-CcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTII-GEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~-eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.|+++|+++|+..   .++|++| ++|++.++.++ +++||+|+... .+.  ...+...++..|+++.
T Consensus        39 y~r~~~p~~~~L~~~lA~l~g~~~---~v~~~sG-~~ai~~~l~al-~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~  113 (376)
T PRK06460         39 YSREANPTVLELTKKIVELENAEM---GVAFSSG-MGAISTTALAL-LKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD  113 (376)
T ss_pred             eeCCCCccHHHHHHHHHHHhCCCc---EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE
Confidence            445555567899999999999953   5888666 68999988877 67899876432 222  2234455667799998


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .++.+.      .+.+++.+++     ++++|.+...+|  |.++|++.|.+ ++++|+++++|.+++. +.....+ .+
T Consensus       114 ~~~~~~------~~~l~~~~~~-----~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~-~~~~~~l-~~  180 (376)
T PRK06460        114 ASNPGS------DNIIEKAKSK-----RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFST-PINQKPL-EL  180 (376)
T ss_pred             EECCCC------HHHHHHhcCC-----CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCc-cccCChh-hc
Confidence            887542      2234443332     478898888777  99999987865 6899999999999987 6322222 35


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      ++|+++.|++|+ |+++.+  .|+++.++++.
T Consensus       181 ~~divv~S~sK~-l~G~~~~~~G~~~~~~~l~  211 (376)
T PRK06460        181 GADIVVHSASKF-LAGHNDVIAGLAAGYGKLL  211 (376)
T ss_pred             CCCEEEeeccee-ccCCCCceEEEEecCHHHH
Confidence            789999999999 886643  67777665543

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.40  E-value=6.4e-12  Score=125.47  Aligned_cols=160  Identities=9%  Similarity=-0.005  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++++|+++|+..    .++++|++.|+.+++.++ +.+||+++. ...|.  ...+...+...|+++..++.+
T Consensus        58 ~p~~~~le~~lA~l~g~~~----av~~~sG~~Ai~~~l~al-~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~  132 (391)
T TIGR01328        58 NPTVSNLEGRIAFLEGTEA----AVATSSGMGAIAATLLTI-LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA  132 (391)
T ss_pred             CchHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC
Confidence            3456788899999999852    577778888998888777 678998654 43454  223455566779999888764


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                            +.+++++++++     +|++|.+...+|  |.+.|++.|.+ ++++|+++++|.+++. +...-.+ ..++|++
T Consensus       133 ------d~e~l~~~i~~-----~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~-~~~~~~~-~~g~Div  199 (391)
T TIGR01328       133 ------IPEEVKAHIKD-----NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFAT-PMLTNPV-ALGVDVV  199 (391)
T ss_pred             ------CHHHHHHhhcc-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCch-hccCCch-hcCCCEE
Confidence                  46778888765     478888876666  99999987765 6999999999999998 6543333 3589999


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      ++|++|+ +|+|.+  .|+++.+++..
T Consensus       200 v~S~sK~-lgg~g~~~gG~v~~~~~li  225 (391)
T TIGR01328       200 VHSATKY-IGGHGDVVAGLICGKAELL  225 (391)
T ss_pred             Ecccccc-ccCCCCceEEEEEcCHHHH
Confidence            9999999 987744  46666665543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.40  E-value=9.9e-12  Score=124.72  Aligned_cols=159  Identities=13%  Similarity=0.008  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++++|++.|++    .+++++|++.|+..++.++ +.+||++++ ...|.  ...+...++..|++++.++.+
T Consensus        69 ~p~~~~le~~lA~l~g~~----~al~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~  143 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAE----ACFATASGMSAVFTALGAL-LGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE  143 (403)
T ss_pred             CchHHHHHHHHHHHhCCC----cEEEECChHHHHHHHHHHH-hCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC
Confidence            334678889999999974    3788888889988887776 578999764 33443  223455566789999988742


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                            +.+++++++++     +|++|.+...+|  |.+.|++.|.. +|++|+++++|.+++. |...-.+ .+++|++
T Consensus       144 ------d~~~l~~ai~~-----~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~-~~~~~~~-~~gaDiv  210 (403)
T PRK07810        144 ------DLSQWEEALSV-----PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFAT-PLLQRGL-PLGADVV  210 (403)
T ss_pred             ------CHHHHHHhcCc-----CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCc-cccCChh-hcCCcEE
Confidence                  56788888875     477888876666  99999987765 6999999999999998 6553233 4589999


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCCC
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      ++|++|+ ++++..  .|+++.+++.
T Consensus       211 v~S~tK~-l~g~g~~~gG~v~~~~~~  235 (403)
T PRK07810        211 VYSGTKH-IDGQGRVLGGAILGDREY  235 (403)
T ss_pred             EccCCce-ecCCcCceeEEEEeChHH
Confidence            9999999 885532  4777666653

>PRK05968 hypothetical protein; Provisional

Probab=99.40  E-value=9.3e-12  Score=124.13  Aligned_cols=158  Identities=10%  Similarity=-0.045  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++++|+++|++.   .++| +++|.|+.+++.++ +++||+++ +...|+.  ..+...++..|+++.+++.+ 
T Consensus        63 p~~~~le~~lA~l~g~~~---av~~-~sG~~Ai~~al~al-~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-  136 (389)
T PRK05968         63 PTVRAFEEMLAKLEGAED---ARGF-ASGMAAISSTVLSF-VEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-  136 (389)
T ss_pred             hhHHHHHHHHHHHhCCCc---EEEE-CCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-
Confidence            457889999999999952   4665 55567988777765 67899865 4555552  23455566779999888643 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.+++++++ +     ++++|.+...+|  +.+.|++.|.+ +|++|+++++|++++. +...-.+ .+++|+++
T Consensus       137 -----d~~~l~~~i-~-----~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~-~~~~~p~-~~g~Divv  203 (389)
T PRK05968        137 -----DEEAVAKAL-P-----GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWAS-PVFQRPI-TLGVDLVI  203 (389)
T ss_pred             -----CHHHHHHhc-c-----cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc-hhccCch-hcCCcEEE
Confidence                 567787776 2     367888876555  78888877764 6999999999999988 7432222 35899999


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +|++|+ +++|.+  .|+++.+++..
T Consensus       204 ~S~tK~-l~g~~~~~gG~i~~~~~~~  228 (389)
T PRK05968        204 HSASKY-LGGHSDTVAGVVAGSKEHI  228 (389)
T ss_pred             eecccc-ccCCCCeEEEEEEECHHHH
Confidence            999999 887865  57777666544

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.39  E-value=5.3e-12  Score=137.69  Aligned_cols=167  Identities=14%  Similarity=0.031  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHH---HHHHhhCCCCC----CCe-EEEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAM---MLVGESYPFFR----GNF-YMTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAl---nlva~sl~~~~----Gd~-ivS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      +.+.+....+++++|.+.   .-++.++++.|-   -++++.+.-.+    .+. +++..-|..|.  ..++..|++|++
T Consensus       530 q~i~elq~~l~eltGmd~---~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP--asa~~~G~~Vv~  604 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFDA---ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP--ASAAMAGMQVVP  604 (939)
T ss_pred             HHHHHHHHHHHHHHCCCC---cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH--HHHHHCCCEEEE
Confidence            467899999999999973   234555555332   22444432111    233 45666676442  124556999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccccc-HHHHH-HHHhCCcEEEecccccCcCCccCC-CCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYS-MHWIS-EAHRNSWHVLLDATALVVGEDRLN-LALH  303 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~P-l~~Ia-~ar~~g~~vlvDAaQa~~G~~~LD-Ls~l  303 (344)
                      +|.+. +|.+|.++|++.+++.  ..++++|.+++.|| |.+.| ++.|. .+|++|..++||++|.. ++..++ ..++
T Consensus       605 V~~d~-~G~iDle~L~~~i~~~--~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~-al~~l~~Pg~~  680 (939)
T TIGR00461       605 VNCDQ-DGNIDLVDLKNKAEQH--GDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMN-AQVGLTSPGDL  680 (939)
T ss_pred             eccCC-CCCcCHHHHHHHHhhc--CCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChh-hCCCCCCcccc
Confidence            99874 6899999999999741  12588898988887 99988 98775 47999999999999988 666555 4679


Q ss_pred             CCcEEEEccccCCCC-----CCCceEEEEEeCCC
Q 035915          304 RPDFVLCNLDNTQNA-----QPSKITCLLIRKKS  332 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G-----~P~GiG~L~Vr~~~  332 (344)
                      ++||+++|+||+ ||     ||.|+|++++|+.+
T Consensus       681 GaDi~~~s~HKt-f~~P~G~GGPg~G~i~vr~~L  713 (939)
T TIGR00461       681 GADVCHLNLHKT-FCIPHGGGGPGMGPIGVKSHL  713 (939)
T ss_pred             CCCEEEecCCcc-CCCCCCCCCCCeEEEEEhhhc
Confidence            999999999998 55     34477999999753

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.38  E-value=1.5e-11  Score=122.42  Aligned_cols=157  Identities=10%  Similarity=-0.056  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~  230 (344)
                      ........+++++++.|+..   .| +++|++.|+.+++..  +++|++++ +...|+  ...+..++...|+++..++.
T Consensus        48 ~~p~~~~Le~~la~l~g~~~---al-~~~SG~~Al~~~l~~--l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~  121 (380)
T PRK06176         48 GNPTRFALEELIADLEGGVK---GF-AFASGLAGIHAVFSL--FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT  121 (380)
T ss_pred             CChhHHHHHHHHHHHhCCCC---EE-EECCHHHHHHHHHHH--cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence            33346778889999999742   34 556667799877753  47899965 444454  22345556677999888764


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      .      +.+++++++++     ++++|.+...+|  |.++|++.|.+ +|++|+++++|.+++. +.....+ .+++|+
T Consensus       122 ~------d~e~l~~ai~~-----~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~-~~~~~p~-~~gaDi  188 (380)
T PRK06176        122 S------DLSQIKKAIKP-----NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT-PYYQNPL-LLGADI  188 (380)
T ss_pred             C------CHHHHHHhcCc-----CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc-cccCCcc-ccCCCE
Confidence            2      56778888765     478888765566  99999987765 6999999999999997 6543334 478999


Q ss_pred             EEEccccCCCCCCCc--eEEEEEeC
Q 035915          308 VLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       308 vv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      +++|++|+ +++|..  .|+++.++
T Consensus       189 vv~S~tK~-l~g~~d~~gG~vv~~~  212 (380)
T PRK06176        189 VVHSGTKY-LGGHSDVVAGLVTTNN  212 (380)
T ss_pred             EEecCcee-ccCCccceeeEEEecH
Confidence            99999999 887753  44455543

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.37  E-value=1.6e-11  Score=121.47  Aligned_cols=150  Identities=16%  Similarity=0.065  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC-HH-HHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE-LD-YVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~-~~-~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....+.++++|++.  . +  ++++++|+++|+++++.++ +++||+++. ...+. .. .++..+++.|++++.++.+.
T Consensus        51 p~~~~Le~~lA~l~--~-~--~~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~  124 (366)
T PRK07582         51 PTWRALEAALGELE--G-A--EALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAG  124 (366)
T ss_pred             ccHHHHHHHHHHHc--C-C--CEEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCC
Confidence            35677888899998  2 2  3666777788999998887 789999764 33443 22 22333456799999998753


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEeccccc--CcCCccCCCCCCCCcE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATAL--VVGEDRLNLALHRPDF  307 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa--~~G~~~LDLs~l~~DF  307 (344)
                      . .    +    .+.+     +++||.+...+|  |.+.|++.|.+ +|++|+.++||.+++  . |..+++   +++|+
T Consensus       125 ~-~----~----~~~~-----~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~-~~~p~~---~g~Di  186 (366)
T PRK07582        125 M-A----E----AALA-----GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL-GQRPLE---LGADL  186 (366)
T ss_pred             h-H----H----Hhcc-----CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc-ccCchh---cCCcE
Confidence            1 1    1    1122     477888776666  88999987765 689999999999985  4 666665   47899


Q ss_pred             EEEccccCCCCCCCc--eEEEEEeC
Q 035915          308 VLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       308 vv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++.|+||| +++|.|  .|+++.++
T Consensus       187 vv~S~sK~-l~G~~g~~~G~v~~~~  210 (366)
T PRK07582        187 VVASDTKA-LTGHSDLLLGYVAGRD  210 (366)
T ss_pred             EEeccccc-ccCCCCeeEEEEEcCc
Confidence            99999999 877877  47777653

>PLN02509 cystathionine beta-lyase

Probab=99.37  E-value=2e-11  Score=125.04  Aligned_cols=156  Identities=13%  Similarity=0.004  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..++..+.+|++.|.. .  .|+| ++++.++.++.. + +++||+|+ +...|..  ..+..+....|++++.++..  
T Consensus       134 t~~aLE~~lA~leg~e-~--ai~~-~SG~aAi~~il~-l-l~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~--  205 (464)
T PLN02509        134 TRDALESLLAKLDKAD-R--AFCF-TSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--  205 (464)
T ss_pred             HHHHHHHHHHHHhCCC-E--EEEe-CcHHHHHHHHHH-H-hCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC--
Confidence            4567777888898863 1  3555 555788877664 3 57899966 4444542  23445556679998887632  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                          +.+++++++++     +|++|.+...+|  |.+.|++.|.+ +|++|+++++|.+|+. |.....+ .+++|++++
T Consensus       206 ----d~e~l~~ai~~-----~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~-~~~~~pl-~~gaDivv~  274 (464)
T PLN02509        206 ----NLDEVAAAIGP-----QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS-PVLSRPL-ELGADIVMH  274 (464)
T ss_pred             ----CHHHHHHhCCc-----CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccc-cccCChh-hcCCcEEEe
Confidence                46778888865     478998888877  99999987764 6999999999999998 7654333 368999999


Q ss_pred             ccccCCCCCCCc--eEEEEEeCCC
Q 035915          311 NLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       311 S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      |++|| +++|.+  .|+++++++.
T Consensus       275 S~tK~-l~G~gdv~gG~v~~~~~~  297 (464)
T PLN02509        275 SATKF-IAGHSDVMAGVLAVKGEK  297 (464)
T ss_pred             cCccc-ccCCCccceeEEEeccHH
Confidence            99999 887866  6778776543

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.36  E-value=1.5e-11  Score=125.83  Aligned_cols=194  Identities=15%  Similarity=0.085  Sum_probs=134.4

Q ss_pred             ccchHHHHHHhhccCCCChhh--hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--C-----C-CC-
Q 035915          132 TQLEPSRLLDILTKKSSFPGS--FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--F-----F-RG-  200 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss~~g~--~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~-----~-~G-  200 (344)
                      .....+.+...+..|.-.++.  .++...+++=.-+++++|++ ++..=+||+|+|||+.+.+..-.  |     . .+ 
T Consensus        75 ~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~  153 (460)
T COG0076          75 PPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGK  153 (460)
T ss_pred             HHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            334445555556666322222  34446688889999999996 44578999999999886443321  1     1 01 


Q ss_pred             ---C-eEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHH
Q 035915          201 ---N-FYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWIS  275 (344)
Q Consensus       201 ---d-~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia  275 (344)
                         - +++.+..-| -++...++..|++++.+|.+..+.++|.++|++++++.+...  .+|+....-. |.+=||+.|+
T Consensus       154 ~~~~P~ii~s~~aH-~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g--~vV~~aGtT~~G~iDdi~~ia  230 (460)
T COG0076         154 PGGKPNIVCSETAH-FSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG--VVVGTAGTTDTGSIDDIEELA  230 (460)
T ss_pred             cCCCCeEEecCcch-hHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc--eEEEEecCCCCCccCCHHHHH
Confidence               1 344443322 236666777899999988876467899999999998753111  1555554443 9999999997


Q ss_pred             H-HHhCCcEEEecccccCcCCccC-------CCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          276 E-AHRNSWHVLLDATALVVGEDRL-------NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       276 ~-ar~~g~~vlvDAaQa~~G~~~L-------DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      . |+++++++|||||=.- ...++       |+..-++|-+++++||| +..|.|+|++++|++
T Consensus       231 ~ia~~~~i~lHVDAA~GG-~~~pf~~~~~~~~f~l~~vdSIt~d~HK~-g~aP~~~G~il~rd~  292 (460)
T COG0076         231 DIAEEYGIWLHVDAAFGG-FLLPFLEPDGRWDFGLEGVDSITVDGHKY-GLAPIGCGVVLFRDE  292 (460)
T ss_pred             HHHHHcCCcEEEEccccc-eeecccCccchhhcCCCCceEEEECcccc-cCCCCCceEEEEECH
Confidence            6 5899999999998765 44432       34445899999999999 667999999999987

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.36  E-value=2.5e-11  Score=120.93  Aligned_cols=197  Identities=16%  Similarity=0.095  Sum_probs=124.8

Q ss_pred             cccchHHHHHHhhccCC-C-ChhhhhhHHHHHHHHHHHHHcCCCCC-----CCeEEEeCCHHHHHHHHHhhC--------
Q 035915          131 RTQLEPSRLLDILTKKS-S-FPGSFISIPEIQARNKVLKHCGLPDD-----EYLVLFTPNYRDAMMLVGESY--------  195 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gns-s-~~g~~as~~le~AR~~IA~~Lga~p~-----ey~VVFTsnaTeAlnlva~sl--------  195 (344)
                      ......+.+...+..|. . ..+..++....++-+.+++++|.+.+     +..=+||+|+|+|+...+...        
T Consensus        52 ~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~  131 (373)
T PF00282_consen   52 PASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRS  131 (373)
T ss_dssp             HHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhh
Confidence            34444555555555552 2 23334555678899999999999721     235799999999976433211        


Q ss_pred             ---CCC-CCCe--EEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCee-EEEEeCcc-c-c
Q 035915          196 ---PFF-RGNF--YMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKG-LFSYPADI-N-G  266 (344)
Q Consensus       196 ---~~~-~Gd~--ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~-LVa~~avS-N-G  266 (344)
                         ... .+..  |+|...|.+  +...|.-.|+.++.||.+. +++++.++|++.+......+.+- +|+.++-+ + |
T Consensus       132 ~~~~~~~~~~~~i~~s~~aH~S--~~Kaa~~lGlg~~~I~~~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~G  208 (373)
T PF00282_consen  132 KAKGVEEIPKPVIYVSEQAHYS--IEKAARILGLGVRKIPTDE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTG  208 (373)
T ss_dssp             HHHTTTHCSSEEEEEETTS-TH--HHHHHHHTTSEEEEE-BBT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTS
T ss_pred             hhcccccccccccccccccccH--HHHhcceeeeEEEEecCCc-chhhhHHHhhhhhcccccccccceeeeccCCCcccc
Confidence               000 1122  345555553  5555667799999999987 58999999998886432111222 34444333 3 9


Q ss_pred             ccccHHHHHH-HHhCCcEEEecccccCcCCc------cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          267 TRYSMHWISE-AHRNSWHVLLDATALVVGED------RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       267 ~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~------~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      .+=|++.|.. ++++++++||||+... ...      +++..-.++|-+++++||| ++.|.++|++++|+..
T Consensus       209 a~D~l~~i~~i~~~~~~wlHVDaA~gg-~~~~~~~~~~~~~gi~~adSit~d~HK~-l~~P~~~~~~l~r~~~  279 (373)
T PF00282_consen  209 AIDPLEEIADICEKYNIWLHVDAAYGG-SALLSPEYRHLLFGIERADSITIDPHKW-LGVPYGCGVLLVRDKS  279 (373)
T ss_dssp             BB-SHHHHHHHHHHCT-EEEEEETTGG-GGGGHCTTGGGGTTGGGESEEEEETTTT-TS-SSS-EEEEESSGG
T ss_pred             cccCHHHHhhhccccceeeeecccccc-cccccccccccccccccccccccchhhh-hcCCccceeEEeeccc
Confidence            9999988875 5889999999997664 221      2222334699999999999 7789999999999864

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.36  E-value=3.3e-11  Score=118.95  Aligned_cols=156  Identities=13%  Similarity=0.068  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      .++..+.+++++|++    .+++|+|+|+|+++++..+.+++||+|+ ....|..  ....+...|++++.++.+..+..
T Consensus        33 ~~~~e~~la~~~g~~----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~--~~~~~~~~G~~~v~~d~d~~~~~  106 (375)
T PRK11706         33 TRRCQQWLEQRFGSA----KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS--TANAFVLRGAKIVFVDIRPDTMN  106 (375)
T ss_pred             HHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHH--HHHHHHHcCCEEEEEecCCCcCC
Confidence            455566788889883    5999999999999988777678899865 4555442  22334456999999998865456


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC--CCCcEEEEccc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL--HRPDFVLCNLD  313 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~--l~~DFvv~S~H  313 (344)
                      ++.++|++.+++     ++++|.+.+ .+|...+++.|.+ ++++|+.++.|++|+. |.. .+-..  ...|+-+||+|
T Consensus       107 ~d~~~le~~i~~-----~tk~i~~~~-~~G~~~~~~~i~~la~~~~i~vIeD~a~a~-g~~-~~~~~~g~~~~~~~~Sf~  178 (375)
T PRK11706        107 IDETLIEAAITP-----KTRAIVPVH-YAGVACEMDTIMALAKKHNLFVVEDAAQGV-MST-YKGRALGTIGHIGCFSFH  178 (375)
T ss_pred             cCHHHHHHhcCC-----CCeEEEEeC-CCCCccCHHHHHHHHHHcCCEEEEECcccc-ccc-cCCeeeecCcCEEEEeCC
Confidence            889999998865     366666543 2599999977754 6899999999999999 862 22221  12599999999


Q ss_pred             --cCCCCCCCce-EEEEEeC
Q 035915          314 --NTQNAQPSKI-TCLLIRK  330 (344)
Q Consensus       314 --K~l~G~P~Gi-G~L~Vr~  330 (344)
                        |. ++ + |. |++++++
T Consensus       179 ~~K~-l~-~-g~gG~~~~~~  195 (375)
T PRK11706        179 ETKN-YT-A-GEGGALLIND  195 (375)
T ss_pred             CCcc-cc-c-cCCeEEEECC
Confidence              98 76 4 54 4455543

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.36  E-value=1.2e-11  Score=124.36  Aligned_cols=165  Identities=11%  Similarity=-0.013  Sum_probs=112.8

Q ss_pred             hhhHHHHH-HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHH---HHHHHHHcCCcEE--
Q 035915          153 FISIPEIQ-ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELD---YVREFASFKESKV--  225 (344)
Q Consensus       153 ~as~~le~-AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~---~ir~la~~~G~kV--  225 (344)
                      .....+|+ +++++++++|+.   +.++|++++|.|+..++.++ .++||+|++ ...|...   ..+.  ...+..+  
T Consensus        70 ~~~~~lE~~~~~~la~l~g~~---~alv~~~SG~~A~~~~l~al-~~~GD~Vl~~~~~~~~~~~~g~~~--~~~~~~~~~  143 (416)
T PRK13034         70 EFVDEVEALAIERAKQLFGCD---YANVQPHSGSQANGAVYLAL-LKPGDTILGMSLSHGGHLTHGAKV--SLSGKWYNA  143 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhCCC---ceEEecCCcHHHHHHHHHHh-cCCCCEEEEcCccceeeeecCCcc--eeccceeee
Confidence            33445666 999999999985   24678889999999999888 789999764 4444321   1110  0012222  


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC--
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL--  302 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~--  302 (344)
                      ...+.+..++.++.+++++.+...    ++++|.+...++|...|++.|.+ ++++|+++++|+||++ |........  
T Consensus       144 ~~~~~~~~~~~~d~~~le~~l~~~----~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~-G~~~~g~~~~~  218 (416)
T PRK13034        144 VQYGVDRLTGLIDYDEVEELAKEH----KPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIA-GLVAAGEHPNP  218 (416)
T ss_pred             EEcccccccCCcCHHHHHHHHhhc----CCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccc-cCcccCCCCCC
Confidence            233333334568899999887542    35777665444699999988865 6999999999999998 876443311  


Q ss_pred             -CCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          303 -HRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       303 -l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                       ..+|++++|+||| +++|.| |+++.++
T Consensus       219 ~~~~Di~~~s~~K~-l~g~~G-G~v~~~~  245 (416)
T PRK13034        219 FPHAHVVTTTTHKT-LRGPRG-GMILTND  245 (416)
T ss_pred             CCCceEEEEeCccc-CCCCCC-eEEEECc
Confidence             2589999999999 766877 5555544

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.36  E-value=1.4e-11  Score=120.03  Aligned_cols=162  Identities=12%  Similarity=0.077  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      .+.|+.+|+++|++++  +|++|+|+++++++++.++ +++|+.++.. ++........+...|++++.+|.+  +..++
T Consensus        70 ~~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~-~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~  143 (367)
T PRK02731         70 FELKAALAEKFGVDPE--RIILGNGSDEILELLARAY-LGPGDEVIYS-EHGFAVYPIAAQAVGAKPVEVPAK--DYGHD  143 (367)
T ss_pred             HHHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEe-cCCHHHHHHHHHHcCCeEEEeccc--CCCCC
Confidence            5799999999999876  7999999999999999888 5788886543 122222333456679999998875  34678


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCcCCc------cCCCCCC-CCc
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGED------RLNLALH-RPD  306 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~~------~LDLs~l-~~D  306 (344)
                      .+++++.+++     ++++|.++..+|  |.++|++++.+ ++.  +|+++++|.++.. ...      .+++-+. .-.
T Consensus       144 ~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~-~~~~~~~~~~~~~~~~~~~~  217 (367)
T PRK02731        144 LDAMLAAVTP-----RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAE-YVRRKDYEDGLELVAKFPNV  217 (367)
T ss_pred             HHHHHHHhCC-----CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHH-hccCcCcccHHHHHhhcCCE
Confidence            8999888864     467888876666  99999987765 343  4899999999763 211      1121111 224


Q ss_pred             EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +++.|+=|. ||.| |  +|+++++++..+
T Consensus       218 i~~~S~SK~-~g~~-G~RiG~l~~~~~~~~  245 (367)
T PRK02731        218 VVTRTFSKA-YGLA-GLRVGYGIAPPEIID  245 (367)
T ss_pred             EEEeeehHh-hcCc-ccceeeeeCCHHHHH
Confidence            666688898 8745 5  699998876543

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.35  E-value=4.9e-11  Score=117.30  Aligned_cols=179  Identities=10%  Similarity=0.022  Sum_probs=119.3

Q ss_pred             cchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH
Q 035915          133 QLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL  211 (344)
Q Consensus       133 ~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~  211 (344)
                      .++.+.+.+.+..+.-...   ...+++-.+++++++|+.    .++.|+|+|.||.+++.++.+++|++|+ +.+....
T Consensus         5 ~e~~~~v~~~l~s~~~~~~---g~~~~~fE~~~a~~~g~~----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~   77 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLSTY---GPYVEEFEKEFAEYFGVK----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPA   77 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSSS---SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-TH
T ss_pred             HHHHHHHHHHHHhCCccCC---CHHHHHHHHHHHHHhCCC----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchH
Confidence            4455666665555522120   234566777899999974    5899999999999999999999999965 5555331


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccc
Q 035915          212 DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       212 ~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                       .... ....|++++.++++..++.++.+.+++++++     +|+.|.++|. .|...+++.|.. |+++|+.++-||+|
T Consensus        78 -~~~a-i~~~G~~pv~~Di~~~~~~id~~~~~~~i~~-----~t~ai~~~h~-~G~~~d~~~i~~~~~~~~i~lIeD~a~  149 (363)
T PF01041_consen   78 -TASA-ILWAGAEPVFVDIDPETLNIDPEALEKAITP-----KTKAILVVHL-FGNPADMDAIRAIARKHGIPLIEDAAQ  149 (363)
T ss_dssp             -HHHH-HHHTT-EEEEE-BETTTSSB-HHHHHHHHHT-----TEEEEEEE-G-GGB---HHHHHHHHHHTT-EEEEE-TT
T ss_pred             -HHHH-HHHhccEEEEEeccCCcCCcCHHHHHHHhcc-----CccEEEEecC-CCCcccHHHHHHHHHHcCCcEEEcccc
Confidence             1122 2346999999999877889999999999986     3667766643 588889988865 69999999999999


Q ss_pred             cCcCCccCC--CCCCCCcEEEEccc--cCCCCCCCce-EEEEEeCC
Q 035915          291 LVVGEDRLN--LALHRPDFVLCNLD--NTQNAQPSKI-TCLLIRKK  331 (344)
Q Consensus       291 a~~G~~~LD--Ls~l~~DFvv~S~H--K~l~G~P~Gi-G~L~Vr~~  331 (344)
                      +. |..--+  +.. --|+.+||+|  |. +  +.|- |+++.+++
T Consensus       150 a~-g~~~~g~~~G~-~gd~~~fSf~~~K~-i--~~geGG~v~~~~~  190 (363)
T PF01041_consen  150 AF-GARYKGRPVGS-FGDIAIFSFHPTKI-I--TTGEGGAVVTNDP  190 (363)
T ss_dssp             TT-T-EETTEETTS-SSSEEEEESSTTSS-S---SSS-EEEEESTH
T ss_pred             cc-CceeCCEeccC-CCCceEecCCCCCC-C--cCCCCeeEEecHH
Confidence            99 864222  222 2499999998  77 5  4444 55565553

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.35  E-value=2.6e-11  Score=123.82  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=119.3

Q ss_pred             ccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCc
Q 035915          144 TKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKES  223 (344)
Q Consensus       144 ~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~  223 (344)
                      .+...|.+..   -+.+.|++|++++|..    .|++|+|+|+|++++..++ +++|| ++...-|-.. .+......|+
T Consensus        69 ~g~~~Y~~~~---g~~~Lreaia~~~~~~----~vv~t~ggt~A~~~~~~al-l~pGD-Vii~~p~~~~-~~~~i~~~G~  138 (460)
T PRK13238         69 RGDEAYAGSR---SYYRLEDAVKDIFGYP----YTIPTHQGRAAEQILFPVL-IKKGD-VVPSNYHFDT-TRAHIELNGA  138 (460)
T ss_pred             hCCcccCCCC---CHHHHHHHHHHHhCCC----cEEECCCHHHHHHHHHHHh-CCCCC-EEccCCcccc-hHHHHHHcCC
Confidence            4554454433   3456788899999873    4999999999999998887 78999 5533222211 1222334689


Q ss_pred             EEEEEeCCC---------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--c-ccccHH---HHHH-HHhCCcEEEec
Q 035915          224 KVILAPEAW---------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--G-TRYSMH---WISE-AHRNSWHVLLD  287 (344)
Q Consensus       224 kV~~vp~~~---------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G-~i~Pl~---~Ia~-ar~~g~~vlvD  287 (344)
                      +++.+|.+.         ..+.++.++|++.++++. ..+++++.+...+|  | ..++.+   .|.+ |+++|++++.|
T Consensus       139 ~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~-~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~D  217 (460)
T PRK13238        139 TAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG-AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVID  217 (460)
T ss_pred             EEEEEeccccccccccccccCCcCHHHHHHHHhhcC-CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            999888742         125599999999997521 12578888886666  4 787764   4544 58899999999


Q ss_pred             ccccCcCC-----------ccCCCCC------CCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          288 ATALVVGE-----------DRLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       288 AaQa~~G~-----------~~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ++|.. +.           ...++.+      ...|++++|+||+ +++|.| |+|+.++
T Consensus       218 aa~~~-e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~-g~~~~G-G~i~~~d  274 (460)
T PRK13238        218 AARFA-ENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKD-AMVNIG-GLLCFRD  274 (460)
T ss_pred             Ccchh-hhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccC-CCCcce-eEEEcCh
Confidence            99965 42           2223221      2489999999998 666876 8888774

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.35  E-value=2.3e-11  Score=121.69  Aligned_cols=160  Identities=12%  Similarity=0.000  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....+.++++|++.|.+    .+++++|+++|+.+++.++ +++||+++ +...|..  ..+...++..|++++.++.+ 
T Consensus        64 p~~~~Le~~iA~~~g~~----~~l~~~sG~~Ai~~al~~l-l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-  137 (400)
T PRK06234         64 PTSTEVENKLALLEGGE----AAVVAASGMGAISSSLWSA-LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-  137 (400)
T ss_pred             ccHHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-
Confidence            34677899999999973    3788888889998877766 57899865 4444552  22334456679999888753 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC--CcEEEecccccCcCCccCCCCCCCCcE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN--SWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~--g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                           +.+++++.+++     ++++|.+...+|  |.+.|++.|.+ ++++  |+++++|.+++. +.....+ .+++|+
T Consensus       138 -----d~e~l~~~i~~-----~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~-~~~~~~l-~~g~Di  205 (400)
T PRK06234        138 -----NLEEVRNALKA-----NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCT-PYIQRPL-QLGADV  205 (400)
T ss_pred             -----CHHHHHHHhcc-----CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCc-hhcCCch-hhCCcE
Confidence                 56788888865     477888877666  99999987765 5775  999999999988 7543333 358999


Q ss_pred             EEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++.|++|+ +++|..  .|+++.+++..+
T Consensus       206 vv~S~sK~-l~g~g~~~gG~v~~~~~~~~  233 (400)
T PRK06234        206 VVHSATKY-LNGHGDVIAGFVVGKEEFIN  233 (400)
T ss_pred             EEeecccc-ccCCCCceeEEEEecHHHHH
Confidence            99999999 886732  588887765433

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.33  E-value=1.8e-11  Score=118.68  Aligned_cols=162  Identities=10%  Similarity=0.048  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.|+.+|+++|++++  +|++ |+|+++++++++.++ .++|+.++...-+ ...+...++..|++++.+|.+. ++.+
T Consensus        72 ~~lr~~ia~~~~~~~~--~i~~~~~Ga~~~i~~~~~~~-~~~gd~vlv~~p~-y~~~~~~~~~~g~~~~~~~~~~-~~~~  146 (361)
T PRK00950         72 PELREALSKYTGVPVE--NIIVGGDGMDEVIDTLMRTF-IDPGDEVIIPTPT-FSYYEISAKAHGAKPVYAKREE-DFSL  146 (361)
T ss_pred             HHHHHHHHHHhCCCHH--HEEEeCCCHHHHHHHHHHHh-cCCCCEEEEcCCC-hHHHHHHHHHcCCEEEEeecCC-CCCc
Confidence            7799999999999876  6888 789999999988877 5688886533221 2223334566799999998654 4468


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc--cCCC-CCCCCcEEEEc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED--RLNL-ALHRPDFVLCN  311 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~--~LDL-s~l~~DFvv~S  311 (344)
                      +.++|++.+++     +++++.++..+|  |.++|++.+.+ ++++|+++++|.++.- -..  ...+ ...+--+++.|
T Consensus       147 ~~~~l~~~~~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~-~~~~~~~~~~~~~~~vi~~~S  220 (361)
T PRK00950        147 DVDSVLNAITE-----KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVE-FAEYDYTPLALEYDNLIIGRT  220 (361)
T ss_pred             CHHHHHHHhcc-----CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhh-hCccchHHHHHhcCCEEEEEe
Confidence            89999888754     366777766666  99999987765 5888999999999964 221  0111 11222366779


Q ss_pred             cccCCCCCCCc--eEEEEEeCCCc
Q 035915          312 LDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       312 ~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +-|. ||.| |  +|.++..++..
T Consensus       221 ~SK~-~g~~-GlRiG~~~~~~~~~  242 (361)
T PRK00950        221 FSKV-FGLA-GLRIGYGFVPEWLI  242 (361)
T ss_pred             ehHh-hcCc-hhhcchhcCCHHHH
Confidence            9999 8856 6  78887766544

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.32  E-value=4.1e-11  Score=121.18  Aligned_cols=159  Identities=12%  Similarity=0.034  Sum_probs=114.9

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +......++.++++|++.|+.    ..++++|+++|+.+++.++ +++||+++. ...++  ...+.......|+++.++
T Consensus        54 r~~~pt~~~Le~~lA~l~g~~----~~l~~ssG~~Ai~~al~al-~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~  128 (425)
T PRK06084         54 RIMNPTNDVLEQRVAALEGGV----GALAVASGMAAITYAIQTI-AEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFA  128 (425)
T ss_pred             CCCCchHHHHHHHHHHHhCCC----ceeEehhHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEE
Confidence            333345678899999999964    2567888889999998877 568998653 44444  222222233457777766


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +..      +.++|++++++     ++++|.+...+|  |.++|++.|.+ ||++|+++++|.+|+. |...-.+ .+++
T Consensus       129 d~~------d~e~le~ai~~-----~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~-~~~~~p~-~~ga  195 (425)
T PRK06084        129 AHD------DIAALEALIDE-----RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVAT-PVLCRPF-EHGA  195 (425)
T ss_pred             CCC------CHHHHHHHhcc-----CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-cccCChh-hcCC
Confidence            532      56788888865     367777776666  99999987755 6999999999999998 7553333 4789


Q ss_pred             cEEEEccccCCCCCCC-ceEEEEEe
Q 035915          306 DFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      |+++.|++|+ +|+|. .+|..++.
T Consensus       196 Divv~S~tK~-l~G~g~~~gG~v~~  219 (425)
T PRK06084        196 DIVVHSLTKY-IGGHGTSIGGIVVD  219 (425)
T ss_pred             CEEEECchhc-ccccccceeEEEEe
Confidence            9999999999 88774 35766664

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.32  E-value=5.9e-11  Score=113.74  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...++.|+.+++++|.+ +  .|++|+|+++.+ .++.++ +++|+.|+ ....|... + ..++..|++++.++.    
T Consensus        61 ~~~~~l~~~la~~~~~~-~--~i~~~~G~~~~~-~~l~~~-~~~gd~v~~~~~~~~~~-~-~~~~~~g~~~~~~~~----  129 (360)
T TIGR00858        61 PLHEELEEELAEWKGTE-A--ALLFSSGYLANV-GVISAL-VGKGDLILSDALNHASL-I-DGCRLSGARVRRYRH----  129 (360)
T ss_pred             HHHHHHHHHHHHHhCCC-C--EEEECchHHHHH-HHHHHh-CCCCCEEEEEccccHHH-H-HHHHhcCCceEEecC----
Confidence            45688999999999963 3  688887755444 455655 57899865 44444422 2 223446888877663    


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCC---------CCC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN---------LAL  302 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD---------Ls~  302 (344)
                        ++.++|++.++... ..+++++.+..++|  |.+.|+++|.+ |+++|+++++|.+|+. |..+.+         +..
T Consensus       130 --~d~~~l~~~~~~~~-~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~  205 (360)
T TIGR00858       130 --NDVEHLERLLEKNR-GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGT-GVLGEDGRGTLEHFGLKP  205 (360)
T ss_pred             --CCHHHHHHHHHHcc-cCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccc-cCcCCCCCchHHhcCCCc
Confidence              35678888876421 02367888777665  99999987765 6999999999999987 754322         222


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      .+.|+++.|++|+ || +.| |+++.+++..
T Consensus       206 ~~~~i~i~s~sK~-~~-~~g-G~~~~~~~~~  233 (360)
T TIGR00858       206 EPVDIQVGTLSKA-LG-SYG-AYVAGSQALI  233 (360)
T ss_pred             cCCcEEEEechhh-hh-ccC-cEEEcCHHHH
Confidence            3679999999999 88 557 8877765543

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07908 hypothetical protein; Provisional

Probab=99.32  E-value=2.6e-11  Score=117.74  Aligned_cols=156  Identities=14%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC-HHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE-LDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~-~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.|++++|++++  +|++|+|+++++.+++. +  .+|+.++.   ++ .......++..|.+++.+|.+.. ..
T Consensus        60 ~~~lr~aia~~~~~~~~--~I~it~Ga~~al~~~~~-l--~~~~viv~---~P~y~~~~~~~~~~G~~i~~v~~~~~-~~  130 (349)
T PRK07908         60 ERRARAAVAARHGRTPD--EVLLLAGAAEGFALLAR-L--RPRRAAVV---HPSFTEPEAALRAAGIPVHRVVLDPP-FR  130 (349)
T ss_pred             hHHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHh-c--CCCeEEEe---CCCChHHHHHHHHcCCEEEeeccCcc-cC
Confidence            56799999999999876  79999999999999887 3  56655443   34 11123445667999999988742 45


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEeccccc--CcCCccCCCCCCC-CcEEEE-
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATAL--VVGEDRLNLALHR-PDFVLC-  310 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa--~~G~~~LDLs~l~-~DFvv~-  310 (344)
                      ++.+.+    .+     +++++.++..+|  |.++|.++|.++.+++.++++|.++.  + ...+.++.... .+++++ 
T Consensus       131 ~d~~~l----~~-----~~~~i~l~np~NPTG~~~~~~~l~~l~~~~~~iIvDe~y~~~~-~~~~~~l~~~~~~~~i~i~  200 (349)
T PRK07908        131 LDPAAV----PD-----DADLVVIGNPTNPTSVLHPAEQLLALRRPGRILVVDEAFADAV-PGEPESLAGDDLPGVLVLR  200 (349)
T ss_pred             cChhHh----cc-----CCCEEEEcCCCCCCCCCcCHHHHHHHHhcCCEEEEECcchhhc-cCCccccccccCCCEEEEe
Confidence            666533    22     367888876666  99999988876544688899999985  2 22234443222 245555 


Q ss_pred             ccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          311 NLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       311 S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      |++|. ||.| |  +|+++++++..+
T Consensus       201 S~SK~-~~l~-GlRiG~~~~~~~~~~  224 (349)
T PRK07908        201 SLTKT-WSLA-GLRVGYALGAPDVLA  224 (349)
T ss_pred             ecccc-cCCc-cceeeeeecCHHHHH
Confidence            99998 8734 5  699998776554

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.31  E-value=6e-11  Score=115.83  Aligned_cols=158  Identities=13%  Similarity=0.059  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC-c
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDL-R  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g-~  236 (344)
                      ..+.|+.||+++|++++  +|++|+|+++++.+++..+  .+|+.++..-.  ...+...++..|++++.+|.+..++ .
T Consensus        57 ~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~l--~~g~viv~~P~--y~~~~~~~~~~g~~~~~v~~~~~~~~~  130 (356)
T PRK08056         57 YRHLHQALARHHQVPAS--WILAGNGETESIFAVVSGL--KPRRAMIVTPG--FAEYRRALQQVGCEIRRYSLREADGWQ  130 (356)
T ss_pred             HHHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHHHh--CCCCEEEeCCC--cHHHHHHHHHcCCeEEEEecccccCCC
Confidence            57899999999999886  7999999999999998876  46766553222  2224455667799999998764322 3


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEeccccc--Cc-C--CccCCCCCCCC
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATAL--VV-G--EDRLNLALHRP  305 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa--~~-G--~~~LDLs~l~~  305 (344)
                      ++ +++.+.+.+     +++++.++..+|  |..++.   +.|. .++++++++++|.+-.  .. +  ..++ +...+.
T Consensus       131 ~~-~~~~~~~~~-----~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~  203 (356)
T PRK08056        131 LT-DAILEALTP-----DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ-LADNPH  203 (356)
T ss_pred             cc-HHHHHhccC-----CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-hccCCC
Confidence            33 345454543     467888876666  999994   4443 4688999999999831  10 1  1121 334557


Q ss_pred             cEEEEccccCCCCCCC-ceEEEEEe
Q 035915          306 DFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      ++++.|++|+ ||.|. .+|.++..
T Consensus       204 ~i~~~S~SK~-~~~~G~RiG~~v~~  227 (356)
T PRK08056        204 LWVLRSLTKF-YAIPGLRLGYLVNS  227 (356)
T ss_pred             EEEEEechhh-ccCcchhheeeecC
Confidence            8999999999 88552 48888774

>PRK08960 hypothetical protein; Provisional

Probab=99.31  E-value=4.3e-11  Score=118.00  Aligned_cols=165  Identities=16%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.||++++      ++++  +|++|+|+++|+++++..+ +.+||.++ ...+|+..  ...+...|.+++.+|+
T Consensus        71 ~~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~--~~~~~~~g~~~~~v~~  145 (387)
T PRK08960         71 LPALREAIAGFYAQRYGVDVDPE--RILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPCN--RHFLRLVEGAAQLVPV  145 (387)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChh--hEEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcch--HHHHHhcCCeEEEEec
Confidence            4668888898873      6665  7999999999999999888 67899864 45555521  2233445889988888


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc--CCccCCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV--GEDRLNLA  301 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~--G~~~LDLs  301 (344)
                      +.. +..++.++|++.+++     +++++.++.-+|  |.++|.+.+.+    |+++|+++++|-+..-.  +.....+.
T Consensus       146 ~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~  220 (387)
T PRK08960        146 GPDSRYQLTPALVERHWNA-----DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVL  220 (387)
T ss_pred             CcccCCCCCHHHHHHHhCc-----cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChh
Confidence            643 235788899888765     356777766666  99999865432    58899999999975320  11111222


Q ss_pred             CCCCc-EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          302 LHRPD-FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~D-Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ....+ +++.|+.|. ||.| |  +|.++..++..+
T Consensus       221 ~~~~~vi~~~S~SK~-~g~~-GlRiG~~~~~~~~~~  254 (387)
T PRK08960        221 EVDDDAFVLNSFSKY-FGMT-GWRLGWLVAPPAAVP  254 (387)
T ss_pred             hccCCEEEEeecccc-cCCc-ccEEEEEEcCHHHHH
Confidence            22233 788999999 8855 7  999998766544

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.30  E-value=8.7e-11  Score=116.36  Aligned_cols=165  Identities=12%  Similarity=0.098  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .....|+.|+++++      ++++  +|++|+|+|+++++++.++ ..+|+.++ +...+.  .+...++..|++++.+|
T Consensus        74 g~~~lr~~ia~~l~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~--~~~~~~~~~g~~v~~v~  148 (394)
T PRK06836         74 GYPEVREAIAESLNRRFGTPLTAD--HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFV--EYRFYVDNHGGKLVVVP  148 (394)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCcC--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCc--cHHHHHHHcCCEEEEEe
Confidence            35678888888885      4555  7999999999999999887 57888865 333322  13444566799999999


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHh------CCcEEEecccccCc---C
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHR------NSWHVLLDATALVV---G  294 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~------~g~~vlvDAaQa~~---G  294 (344)
                      .+..++.++.++|++++++     ++++|.+++.+|  |..+|.+.+.+    +++      +++++++|.+..-.   +
T Consensus       149 ~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~  223 (394)
T PRK06836        149 TDTDTFQPDLDALEAAITP-----KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG  223 (394)
T ss_pred             cCCccCcCCHHHHHhhcCc-----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC
Confidence            8754356899999998864     477888887676  99999865542    466      79999999987520   1


Q ss_pred             CccCC-CCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCC
Q 035915          295 EDRLN-LALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKS  332 (344)
Q Consensus       295 ~~~LD-Ls~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~  332 (344)
                      ..... ++..+-.+++.|+-|. ||.|. ++|++++.+..
T Consensus       224 ~~~~~~~~~~~~~i~~~S~SK~-~~~pGlRiG~~~~~~~~  262 (394)
T PRK06836        224 AEVPYIFKYYDNSIVVYSFSKS-LSLPGERIGYIAVNPEM  262 (394)
T ss_pred             CCCCChHHccCcEEEEecchhh-ccCcceeeEEEecCHHH
Confidence            11111 1223346889999998 88672 48999887654

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.29  E-value=1.1e-10  Score=116.09  Aligned_cols=159  Identities=11%  Similarity=-0.042  Sum_probs=113.2

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +.......+.++++|++.|+..   .+ +++|++.++.++.. + +++||+++ +...|.  ...+..++.+.|++++.+
T Consensus        46 r~~~p~~~~Le~~lA~l~g~~~---~~-~~~sG~aai~~~~~-~-l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v  119 (377)
T PRK07671         46 RTGNPTRAALEELIAVLEGGHA---GF-AFGSGMAAITAVMM-L-FSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFV  119 (377)
T ss_pred             CCCChHHHHHHHHHHHHhCCCc---eE-EeCCHHHHHHHHHH-H-hCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEE
Confidence            3444457889999999999852   34 46666778876653 2 46899865 444454  223344556679999888


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      +..      +.+++++++++     +|++|.+...+|  |.+.|++.|.+ ++++|+++++|.+++. +...-.+ .+++
T Consensus       120 ~~~------d~~~l~~ai~~-----~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~-~~~~~p~-~~g~  186 (377)
T PRK07671        120 DTS------NLEEVEEAIRP-----NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMT-PYWQSPI-SLGA  186 (377)
T ss_pred             CCC------CHHHHHHhcCC-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCc-cccCChh-hhCC
Confidence            642      56788888865     478888876666  99999988865 6999999999999986 5432222 3689


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      |++++|++|| +|+|.+  .|++++++
T Consensus       187 Divv~S~sK~-l~G~~~~~~G~~v~~~  212 (377)
T PRK07671        187 DIVLHSATKY-LGGHSDVVAGLVVVNS  212 (377)
T ss_pred             eEEEecCccc-ccCCccceeEEEEeCc
Confidence            9999999999 988864  45566554

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.29  E-value=7.5e-11  Score=114.32  Aligned_cols=174  Identities=8%  Similarity=0.037  Sum_probs=134.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..-..+++.++-+-..|.... .+..+|..++|.|+..++-.+ +.+||.++ ...+-=..-+...+++.|++|.+++.+
T Consensus        47 e~~qIm~~v~egikyVFkT~n-~~tf~isgsGh~g~E~al~N~-lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~  124 (385)
T KOG2862|consen   47 EFVQIMDEVLEGIKYVFKTAN-AQTFVISGSGHSGWEAALVNL-LEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD  124 (385)
T ss_pred             HHHHHHHHHHHHHHHHhccCC-CceEEEecCCcchHHHHHHhh-cCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC
Confidence            334456777777877787653 357899999999998877665 46899864 333311112334567889999999888


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccH-HHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSM-HWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl-~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      + +..+..+.+.+.|...    +.++|.++|..  +|+.+|+ +.+.+ +|+++++++||++.++ |-.++-+++|++|+
T Consensus       125 ~-G~~~~le~i~~~lsqh----~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSl-ggt~F~mDewgVDv  198 (385)
T KOG2862|consen  125 I-GQAVPLEEITEKLSQH----KPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASL-GGTEFEMDEWGVDV  198 (385)
T ss_pred             c-ccCccHHHHHHHHHhc----CCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhc-CCccceehhhcccE
Confidence            7 4678899999999863    46788887764  4999997 55554 5999999999999999 99999999999999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ......|. +|+|.|++.+-.++.+.+.
T Consensus       199 aytgSQKa-L~aP~GLsiisfS~ka~~~  225 (385)
T KOG2862|consen  199 AYTGSQKA-LGAPAGLSIISFSDKALEA  225 (385)
T ss_pred             EEecchhh-cCCCCCcceeecCHHHHHH
Confidence            99999999 9999999998777766544

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.29  E-value=3.7e-11  Score=118.55  Aligned_cols=165  Identities=16%  Similarity=0.100  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+|+++    |  ++++  +|++|+|+|+|+.+++.++ ..+|+.++ ....|..  +...+...|++++.+|.
T Consensus        72 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~  146 (391)
T PRK08361         72 IPELREAIAEYYKKFYGVDVDVD--NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVC--YVEDAKIAEAKPIRIPL  146 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc--cHHHHHHcCCEEEEEec
Confidence            345777777776    3  5665  7999999999999999887 56888754 4444432  22334557999999988


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.. +..++.++|++.+++     +++++.++..+|  |..+|   +++|. .++++++++++|.+..-.   +.....+
T Consensus       147 ~~~~~~~~d~~~l~~~i~~-----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  221 (391)
T PRK08361        147 REENEFQPDPDELLELITK-----RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPM  221 (391)
T ss_pred             CCccCCCCCHHHHHHhccc-----ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCH
Confidence            643 235889999888865     367787776666  99999   44443 468899999999886430   1111122


Q ss_pred             CC--CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 AL--HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~--l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..  .+.++++.|++|. ||.| |  +|++++.++..+
T Consensus       222 ~~~~~~~~i~~~s~SK~-~~~~-GlRiG~~~~~~~~~~  257 (391)
T PRK08361        222 IKYAPDNTILANSFSKT-FAMT-GWRLGFVIAPEQVIK  257 (391)
T ss_pred             hhcCCCCEEEEecCchh-cCCc-HhhhhhhccCHHHHH
Confidence            11  2467899999998 8866 8  899998766544

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.29  E-value=1.6e-10  Score=112.70  Aligned_cols=163  Identities=12%  Similarity=0.043  Sum_probs=112.8

Q ss_pred             HHHHHHHHHH----cC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKH----CG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~----Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.++++    +|  ++++  +|++|+|+++|+.+++..+ +.+||.++ ..-.|..  ....++..|++++.+|.+
T Consensus        64 ~~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~--~~~~~~~~g~~~~~v~~~  138 (382)
T PRK06108         64 PELREALARYVSRLHGVATPPE--RIAVTSSGVQALMLAAQAL-VGPGDEVVAVTPLWPN--LVAAPKILGARVVCVPLD  138 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCcCcc--eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCccc--hHHHHHHCCCEEEEeeCC
Confidence            3456666655    47  5555  7999999999999998877 56888854 4444441  233445679999999986


Q ss_pred             CC--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCcc------
Q 035915          232 WL--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGEDR------  297 (344)
Q Consensus       232 ~~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~~------  297 (344)
                      ..  +..++.++|++.+++     +++++.++..+|  |.++|.+.+   . .++++|+++++|.++.- ....      
T Consensus       139 ~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~-~~~~~~~~~~  212 (382)
T PRK06108        139 FGGGGWTLDLDRLLAAITP-----RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYER-LYYAPGGRAP  212 (382)
T ss_pred             CCCCCccCCHHHHHHhcCc-----cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhh-hccCCCCCCC
Confidence            42  234788899888754     367777776666  999987443   2 35889999999998764 2211      


Q ss_pred             --CCCCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          298 --LNLAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       298 --LDLs~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                        +++.. .+-.+++.|++|. ||.| |  +|++++++++.+
T Consensus       213 ~~~~~~~~~~~~i~~~S~SK~-~g~~-G~RiG~~~~~~~~~~  252 (382)
T PRK06108        213 SFLDIAEPDDRIIFVNSFSKN-WAMT-GWRLGWLVAPPALGQ  252 (382)
T ss_pred             CHhhcCCCcCCEEEEeechhh-ccCc-ccceeeeeCCHHHHH
Confidence              23322 2345889999998 8755 5  899999776544

>PLN02483 serine palmitoyltransferase

Probab=99.28  E-value=1.1e-10  Score=120.11  Aligned_cols=187  Identities=13%  Similarity=0.098  Sum_probs=119.0

Q ss_pred             ccchHHHHHHhhccC-CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCc
Q 035915          132 TQLEPSRLLDILTKK-SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGE  209 (344)
Q Consensus       132 v~~~~~~L~~~L~gn-ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH  209 (344)
                      .+++.+.+...-.+. ++....-.....++.|+++|+++|.+ +  .|+|++|....+ .++.++ +.+||+|++ ...|
T Consensus       121 ~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~-~--ai~~~~G~~an~-~~i~al-~~~Gd~Vi~d~~~h  195 (489)
T PLN02483        121 TPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP-A--AIVFGMGYATNS-TIIPAL-IGKGGLIISDSLNH  195 (489)
T ss_pred             HHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCC-c--EEEECCHHHHHH-HHHHHh-CCCCCEEEEcchhh
Confidence            455556666542222 11111123456799999999999963 3  689988755443 445555 678999764 4444


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhh-------cCCCCCee-EEEEeCccc--cccccHHHHHH-HH
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRR-------KCKHTPKG-LFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~-------~~~~~~t~-LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                      +.  +...++..|++++.++.+      +.++|++.++.       ++..+.++ +|.+..+.|  |.+.+++.|.+ ++
T Consensus       196 ~s--~~~~~~~~Ga~v~~~~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~  267 (489)
T PLN02483        196 NS--IVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCK  267 (489)
T ss_pred             HH--HHHHHHHcCCeEEEEeCC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHH
Confidence            43  333456679999998854      23455544432       11111123 566656644  99999977754 68


Q ss_pred             hCCcEEEecccccCcCCcc---------CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          279 RNSWHVLLDATALVVGEDR---------LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~---------LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|+++++|.+|++ |...         +++...++|+++.|++|. || +.| |+++.++++.+.
T Consensus       268 ~~~~~livDEa~s~-g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs-~g-~~G-G~i~~~~~li~~  329 (489)
T PLN02483        268 KYKAYVYLDEAHSI-GAVGKTGRGVCELLGVDPADVDIMMGTFTKS-FG-SCG-GYIAGSKELIQY  329 (489)
T ss_pred             HcCCEEEEECcCcc-CccCCCCCchHHhcCCCcccCcEEEEecchh-cc-cCc-eEEEcCHHHHHH
Confidence            99999999999987 6421         233334689999999999 88 556 888777665443

>PRK09105 putative aminotransferase; Provisional

Probab=99.28  E-value=9.1e-11  Score=115.80  Aligned_cols=163  Identities=15%  Similarity=0.056  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.|++++|++++  +|++|+|+++++.+++.++ ..+||.++ ..-.|..  ....++..|++++.+|.+. +..
T Consensus        80 ~~~Lr~aia~~~~v~~e--~I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~~--~~~~~~~~g~~~~~v~~~~-~~~  153 (370)
T PRK09105         80 EDDLRTLFAAQEGLPAD--HVMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYEA--GWRAADAQGAPVAKVPLRA-DGA  153 (370)
T ss_pred             HHHHHHHHHHHhCcChh--hEEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChHH--HHHHHHHcCCeEEEecCCC-CCC
Confidence            66789999999999876  7999999999999999888 46788864 4443332  2344666799999998864 456


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH---HhCCcEEEecccccCcCCcc--CCCCCCCCcEEE
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA---HRNSWHVLLDATALVVGEDR--LNLALHRPDFVL  309 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a---r~~g~~vlvDAaQa~~G~~~--LDLs~l~~DFvv  309 (344)
                      ++.+++.+. .+     +++++.++.-+|  |.++|.+++.++   +++++++++|.+..-.+..+  +++.+...++++
T Consensus       154 ~d~~~l~~~-~~-----~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~  227 (370)
T PRK09105        154 HDVKAMLAA-DP-----NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIV  227 (370)
T ss_pred             CCHHHHHhc-CC-----CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEE
Confidence            788877654 22     366777766666  999999877654   23589999999874212111  333333556555


Q ss_pred             -EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 -CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 -~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       .|+-|. ||.| |  +|+++..+++.+
T Consensus       228 ~~SfSK~-~g~~-GlRiG~~v~~~~~i~  253 (370)
T PRK09105        228 LRTFSKL-YGMA-GMRLGLAAARPDLLA  253 (370)
T ss_pred             EecccHh-hcCC-ccceeeeecCHHHHH
Confidence             588898 8855 7  999998765544

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.28  E-value=2.5e-10  Score=112.94  Aligned_cols=170  Identities=11%  Similarity=0.032  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCC-CCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDD-EYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~-ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....+..++.+++++|+..+ ..+|+||+|+++++.+++.++ +.+||.++ +.-.+...  ...++..|++++.+|.+.
T Consensus        68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~~~  144 (389)
T PRK05957         68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNH--EMAITMAGCQPILVPTDD  144 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCH--HHHHHhcCCEEEEeecCC
Confidence            34568888899999997522 237999999999999888877 57899865 33333311  122345699999999864


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHH-HHHHhCCcEEEecccccCc-----CCcc-CCC
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWI-SEAHRNSWHVLLDATALVV-----GEDR-LNL  300 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~I-a~ar~~g~~vlvDAaQa~~-----G~~~-LDL  300 (344)
                       +..++.++|++.+++     +++++.+++.+|  |.++|   ++.| +.|+++|+++++|.+..-.     .+.+ ..+
T Consensus       145 -~~~~d~~~l~~~i~~-----~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~  218 (389)
T PRK05957        145 -NYQLQPEAIEQAITP-----KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSI  218 (389)
T ss_pred             -CCCcCHHHHHHhcCc-----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhC
Confidence             456899999998864     467888877666  99999   4444 3468899999999985410     1111 111


Q ss_pred             -CCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          301 -ALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       301 -s~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                       ....--+++.|+=|. ||.| |  +|++++.+++.+.
T Consensus       219 ~~~~~~~i~~~S~SK~-~g~~-GlRiG~~~~~~~~~~~  254 (389)
T PRK05957        219 PGSGNHTISLYSLSKA-YGFA-SWRIGYMVIPIHLLEA  254 (389)
T ss_pred             CCccCcEEEEecchhh-ccCc-cceeEEEecCHHHHHH
Confidence             111223677788898 8855 7  9999987665443

>PLN02590 probable tyrosine decarboxylase

Probab=99.27  E-value=3e-10  Score=118.35  Aligned_cols=178  Identities=10%  Similarity=-0.008  Sum_probs=118.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCC-----CCeEEEeCCHHHHHHHHH---hhCCCC----CC--CeEE--EcCCcCHHH
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDD-----EYLVLFTPNYRDAMMLVG---ESYPFF----RG--NFYM--TIIGEELDY  213 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~-----ey~VVFTsnaTeAlnlva---~sl~~~----~G--d~iv--S~~eH~~~~  213 (344)
                      .+..++....++-+.+++++|.+..     ...=+||+|+|+|+.+.+   +-...+    .+  ..++  |..-|.  +
T Consensus       164 ~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~--S  241 (539)
T PLN02590        164 TSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS--S  241 (539)
T ss_pred             cCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH--H
Confidence            3444556778999999999998742     124789999999875432   211010    11  1222  333343  3


Q ss_pred             HHHHHHcCCc---EEEEEeCCCC-CCccCHHHHHHHhhhcCCCC-CeeEEEEeCcc-c-cccccHHHHHH-HHhCCcEEE
Q 035915          214 VREFASFKES---KVILAPEAWL-DLRIKGSQLSQYFRRKCKHT-PKGLFSYPADI-N-GTRYSMHWISE-AHRNSWHVL  285 (344)
Q Consensus       214 ir~la~~~G~---kV~~vp~~~~-~g~i~~~~L~~~l~~~~~~~-~t~LVa~~avS-N-G~i~Pl~~Ia~-ar~~g~~vl  285 (344)
                      +...|.-.|+   .|+.+|.+.. +++++.+.|++.+....... .+-+|+.++-+ + |.+=||+.|+. |+++|+++|
T Consensus       242 v~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlH  321 (539)
T PLN02590        242 FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLH  321 (539)
T ss_pred             HHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEE
Confidence            5555555666   5888898742 46899999999986432111 12344444433 3 99999998876 699999999


Q ss_pred             ecccccCcCCccCC-----C-CCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          286 LDATALVVGEDRLN-----L-ALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       286 vDAaQa~~G~~~LD-----L-s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ||||-.- .....+     + .-..+|-+++++||| ++.|.++|+|++|+.
T Consensus       322 VDaA~GG-~al~~~~~r~~~~Gie~ADSit~D~HK~-l~~p~~cg~llvr~~  371 (539)
T PLN02590        322 VDAAYAG-NACICPEYRKFIDGIENADSFNMNAHKW-LFANQTCSPLWVKDR  371 (539)
T ss_pred             Eecchhh-hhhcChhhHHHhcCCccCCEEEECchhh-cCcCcCEEEEEecCH
Confidence            9998775 332211     1 113589999999999 777999999999975

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.26  E-value=1.8e-10  Score=112.37  Aligned_cols=162  Identities=15%  Similarity=0.085  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...++.++.+++++|++ +  .|++|+| ++++..+..++ +.+||+|+ ....|+..  ...++..|.++..++.    
T Consensus        87 ~l~~~l~~~la~~~g~~-~--~i~~tsG-~~a~~~~~~~l-~~~gd~vi~~~~~~~~~--~~~~~~~~~~~~~~~~----  155 (397)
T PRK06939         87 DLHKELEEKLAKFLGTE-D--AILYSSC-FDANGGLFETL-LGKEDAIISDALNHASI--IDGVRLCKAKRYRYAN----  155 (397)
T ss_pred             HHHHHHHHHHHHHhCCC-c--EEEEcCh-HHHHHHHHHHh-CCCCCEEEEEhhhhHHH--HHHHHhcCCceEEeCC----
Confidence            45688899999999975 3  6888888 77877777766 67899865 45555532  1223334677666653    


Q ss_pred             CccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccC---------CCC
Q 035915          235 LRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL---------NLA  301 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L---------DLs  301 (344)
                        .+.+++++.+++.. ...+++++...++.|  |...+++.|.+ |+++|+++++|.+|+. |....         ++.
T Consensus       156 --~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~-g~~~~~~~~~~~~~~~~  232 (397)
T PRK06939        156 --NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAV-GFVGENGRGTVEHFGVM  232 (397)
T ss_pred             --CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccc-cCcCCCCCCHHHHcCCC
Confidence              25667777765311 012467777765554  99999987764 7999999999999976 64321         221


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                       .++|++++|++|+ |+++. +|+++++++..+
T Consensus       233 -~~~~i~~~S~sK~-~~g~r-~G~v~~~~~~~~  262 (397)
T PRK06939        233 -DRVDIITGTLGKA-LGGAS-GGYTAGRKEVID  262 (397)
T ss_pred             -CCCcEEEEECHHH-hCccC-ceEEEeCHHHHH
Confidence             2579999999999 86564 599888766544

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.25  E-value=5e-10  Score=114.18  Aligned_cols=171  Identities=10%  Similarity=0.016  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHH-HHHHHHHhhCCCC--CCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYR-DAMMLVGESYPFF--RGNFY-MTIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaT-eAlnlva~sl~~~--~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .....++..+.+++++|++.-. ..++++++| .++-+++.++...  +|+++ ++...|.+  ...-+...|++.+.+|
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S--~~kAi~~~G~~pv~Vd  179 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKS--CIKAISTAGFEPRVIE  179 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHH--HHHHHHHcCCeEEEee
Confidence            3445688888899999996432 589999999 5777777776542  57875 46666542  1222344699998888


Q ss_pred             C--CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHHHH-HHhCCcEEEecccccCcCCccC-CC--
Q 035915          230 E--AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL-NL--  300 (344)
Q Consensus       230 ~--~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L-DL--  300 (344)
                      .  +..+..++.++|++++++..  .++.++.+...++   |..-|++.|++ |+++|+++|+|+|++. +...+ ++  
T Consensus       180 ~~~d~~~~~iD~e~Le~aIt~~~--~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~-~~~~~~~~~~  256 (444)
T TIGR03531       180 TVLDGDELTTDVEDIERAIEEIG--PDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGL-QSNKYMELIN  256 (444)
T ss_pred             eeecCcCCCcCHHHHHHHHHhcc--CCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcC-cChhhhhhhh
Confidence            3  44457889999999998531  1234444443333   57889988865 6999999999999998 65331 11  


Q ss_pred             C--CC-CCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          301 A--LH-RPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       301 s--~l-~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      .  .. .+|.+++|+||+ +..|.+-|+++++++
T Consensus       257 ~g~~~Grad~vv~s~hK~-l~~pg~Gg~I~~~d~  289 (444)
T TIGR03531       257 KAIKVGRVDAVVSSTDKN-FMVPVGGAIIYSFDE  289 (444)
T ss_pred             ccccccCCCeEEEeCccC-CCCCCCEEEEEECCH
Confidence            1  12 479999999999 777878777777543

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.24  E-value=3.4e-10  Score=114.92  Aligned_cols=160  Identities=9%  Similarity=0.057  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--------CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--------PFFRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--------~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ..+-++++|+++|++    .+++|+|+|+|+.+++.++        .+.+||+|+ ....|... . ......|++++.+
T Consensus        65 ~~~fe~~lA~~~g~~----~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~-~-~~v~~~G~~pv~v  138 (438)
T PRK15407         65 NDAFEKKLAEFLGVR----YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTT-V-NPIIQNGLVPVFV  138 (438)
T ss_pred             HHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHH-H-HHHHHcCCEEEEE
Confidence            567889999999984    4899999999999888765        567899865 56666522 1 1123468999888


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCC--CCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN--LALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD--Ls~l~~  305 (344)
                      +++..+..++.+++++.+++     ++++|.+.+. .|...+++.|.+ |+++|+++++|++|++ |...-+  +..++ 
T Consensus       139 dvd~~~~~id~~~le~~i~~-----~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~-G~~~~g~~~G~~g-  210 (438)
T PRK15407        139 DVELPTYNIDASLLEAAVSP-----KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDAL-GSTYDGRMTGTFG-  210 (438)
T ss_pred             ecCCCcCCcCHHHHHHHcCc-----CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccch-hhhcCCeeeeccC-
Confidence            88754567899999998865     4677777653 588889977754 6999999999999999 976544  33344 


Q ss_pred             cEEEEcccc--CCCCCCCceEEEEEeCCCc
Q 035915          306 DFVLCNLDN--TQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       306 DFvv~S~HK--~l~G~P~GiG~L~Vr~~~~  333 (344)
                      |+.+||+|.  .+-.++ | |+|+.+++.+
T Consensus       211 d~~~fSf~~~k~~~~ge-G-G~l~t~d~~l  238 (438)
T PRK15407        211 DIATLSFYPAHHITMGE-G-GAVFTNDPLL  238 (438)
T ss_pred             ceEEEeCCCCCCccccC-c-eEEEECCHHH
Confidence            999999985  223334 5 8888876544

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.24  E-value=4.1e-10  Score=109.27  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.|+.+++++|. ++  .|+++ ++++++..++..+ +++|+.|+ ....|... + ..++..|++++.+|..  
T Consensus        83 ~~~~~~l~~~la~~~~~-~~--~i~~~-~g~~~~~~~l~~~-~~~gd~V~~~~~~~~~~-~-~~~~~~g~~~~~~~~~--  153 (385)
T PRK05958         83 SPAHEALEEELAEWFGA-ER--ALLFS-SGYAANLAVLTAL-AGKGDLIVSDKLNHASL-I-DGARLSRARVRRYPHN--  153 (385)
T ss_pred             cHHHHHHHHHHHHHhCC-Cc--EEEEC-cHHHHHHHHHHHh-CCCCCEEEEeCccCHHH-H-HHHHhcCCceEEeCCC--
Confidence            34568899999999995 23  35554 5566655555555 57899865 45555422 1 2233458888777642  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------CCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------LNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------LDLs  301 (344)
                          +.+++++.+++..  ..+.++.+..+.|  |.+.|+++|.+ |+++|+++++|.+|+. |...         .++.
T Consensus       154 ----d~~~l~~~i~~~~--~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~-g~~~~~g~~~~~~~~~~  226 (385)
T PRK05958        154 ----DVDALEALLAKWR--AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGT-GVLGPQGRGLAAEAGLA  226 (385)
T ss_pred             ----CHHHHHHHHHhcc--CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccc-cccCCCCCchHHhhCCC
Confidence                5678888886421  1356777665554  99999987765 6999999999999987 6432         1233


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ....++++.|++|+ || +.| |+++.+++.
T Consensus       227 ~~~~~i~~~s~sK~-~~-~~G-g~~~~~~~~  254 (385)
T PRK05958        227 GEPDVILVGTLGKA-LG-SSG-AAVLGSETL  254 (385)
T ss_pred             CCCceEEEEechhh-cc-cCC-cEEEcCHHH
Confidence            33445889999999 88 556 777666543

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.23  E-value=2e-10  Score=111.98  Aligned_cols=166  Identities=10%  Similarity=0.102  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.||++++++++  +|++|+|+++++++++..+ +.+||.++. .-.+  ..+...++..|++++.++.+. ++.
T Consensus        61 ~~~lr~~ia~~~~~~~~--~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y--~~~~~~~~~~g~~~~~v~~~~-~~~  134 (351)
T PRK14807         61 AEKLREELARYCSVVPT--NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSF--AMYSVYSKIAGAVEIPVKLKE-DYT  134 (351)
T ss_pred             HHHHHHHHHHHhCCCcc--cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCCh--HHHHHHHHHcCCeEEEeecCC-CCC
Confidence            47789999999999876  7999999999999999887 678998653 2222  224445667899999998874 356


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCC-CCCCCCcEEEEc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLN-LALHRPDFVLCN  311 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LD-Ls~l~~DFvv~S  311 (344)
                      ++.+++++.+++.    +++++.++..+|  |..+|.+++.+ +++.+..+++|.+..-. +....+ +....-.+++.|
T Consensus       135 ~d~~~l~~~~~~~----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S  210 (351)
T PRK14807        135 YDVGSFIKVIEKY----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRT  210 (351)
T ss_pred             CCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEec
Confidence            8899998888642    467777776666  99999987765 46667789999998521 321112 112233588899


Q ss_pred             cccCCCCCCC-ceEEEEEeCCCcc
Q 035915          312 LDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       312 ~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +-|. ||.|. .+|.++..+++.+
T Consensus       211 ~SK~-~~~~GlRiG~~v~~~~~~~  233 (351)
T PRK14807        211 LSKA-FGLAGLRVGYAVANENILK  233 (351)
T ss_pred             chHh-cccchhceeeeecCHHHHH
Confidence            9999 87552 3788877655443

>PLN02242 methionine gamma-lyase

Probab=99.23  E-value=1.4e-10  Score=117.10  Aligned_cols=165  Identities=10%  Similarity=-0.037  Sum_probs=118.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC-H-HHHH-HHHHcCCcEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE-L-DYVR-EFASFKESKV  225 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~-~-~~ir-~la~~~G~kV  225 (344)
                      .++......++.++++|+++|+.    .+++|+|+++|+.+++.++ +++||+|+.. ..+. . ..+. .+++..|+++
T Consensus        70 Y~r~~~Pt~~~LE~~lA~l~g~~----~~l~~~sG~~Ai~~al~al-~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~  144 (418)
T PLN02242         70 YSRHFNPTVLNLGRQMAALEGTE----AAYCTASGMSAISSVLLQL-CSSGGHVVASNTLYGGTHALLAHFLPRKCNITT  144 (418)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCC----eEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHhhhhccCceE
Confidence            34444456788999999999985    3678999999999988887 6789997633 2222 1 1122 2233468887


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      +.++.+      +.++|+++++++    ++++|.+...+|  |.+.|++.|.+ +|++|+++++|.+++. ..  ++...
T Consensus       145 ~~~d~~------d~e~l~~~i~~~----~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~-~~--~~~~~  211 (418)
T PLN02242        145 TFVDIT------DLEAVKKAVVPG----KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAP-MV--LSPAR  211 (418)
T ss_pred             EEcCCC------CHHHHHHhcCcC----CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCc-cC--CCHHH
Confidence            766542      567888888642    377888887776  99999987765 6999999999999976 43  34445


Q ss_pred             CCCcEEEEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          303 HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +++|+++.|++|+ |+++..  .|+++.++++.
T Consensus       212 ~g~divv~S~SK~-l~g~g~~~gG~iv~~~~li  243 (418)
T PLN02242        212 LGADVVVHSISKF-ISGGADIIAGAVCGPAELV  243 (418)
T ss_pred             cCCcEEEEeCccc-cCCCCCceEEEEEcCHHHH
Confidence            6899999999999 886633  47777665543

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.23  E-value=5e-10  Score=108.98  Aligned_cols=165  Identities=10%  Similarity=-0.004  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCC---CeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          159 IQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRG---NFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       159 e~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~G---d~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      .+.|+.|++++    |.  ++++ +|++|+|+++|++++...+. .+|   |.|+ ....+..  ....++..|++++.+
T Consensus        39 ~~lr~aia~~~~~~~g~~~~~~~-~Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~p~y~~--~~~~~~~~g~~~~~v  114 (350)
T TIGR03537        39 KALREAISGWFERRFGVKLDPDA-QVLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGTPGYPV--YERGALFAGGEPTAV  114 (350)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC-cEEEcCChHHHHHHHHHHHc-CCCCCCceEEEcCCCCcc--hHHHHHhcCCEEEEc
Confidence            34566666665    64  4432 69999999999999988773 455   5655 3333331  233345679999999


Q ss_pred             eCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccC--cCCccCC
Q 035915          229 PEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALV--VGEDRLN  299 (344)
Q Consensus       229 p~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~--~G~~~LD  299 (344)
                      |.+.. +..++.+++++++++     +++++.++.-+|  |..+|.   +.|. .|+++|+++++|.++.-  .+....+
T Consensus       115 ~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~  189 (350)
T TIGR03537       115 KLKKEDGFLLRLEKVEKSILE-----ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHS  189 (350)
T ss_pred             ccCcccCCccCHHHHHHhhhh-----ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCc
Confidence            88632 334788999888765     367777776566  999995   4443 35889999999999863  0333333


Q ss_pred             CCCCCCc--EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 LALHRPD--FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 Ls~l~~D--Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +...+.|  +++.|+.|. ||.| |  +|+++..+++.+
T Consensus       190 ~~~~~~~~~i~~~s~SK~-~g~~-GlRiG~~~~~~~~~~  226 (350)
T TIGR03537       190 ALEVGIENVLAFHSLSKR-SGMT-GYRSGFVAGDEKLIS  226 (350)
T ss_pred             hhhcCcCCEEEEeecccc-cCCc-cccceeeecCHHHHH
Confidence            3322333  777799999 8866 6  888876554443

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.23  E-value=3.1e-10  Score=111.51  Aligned_cols=165  Identities=14%  Similarity=0.085  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++      +++++  +|++|+|+|+|+.+++.++ ..+|+.++ ....|.  .+...++..|+++..+|.
T Consensus        70 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~--~~~~~~~~~g~~~~~~~~  144 (393)
T PRK05764         70 IPELREAIAAKLKRDNGLDYDPS--QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWV--SYPEMVKLAGGVPVFVPT  144 (393)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHH--HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCc--chHHHHHHcCCEEEEEec
Confidence            466788888887      35554  7999999999999998887 56788754 444443  233445567999999988


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HH-HHHHhCCcEEEecccccCc---CCc----
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WI-SEAHRNSWHVLLDATALVV---GED----  296 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~I-a~ar~~g~~vlvDAaQa~~---G~~----  296 (344)
                      +.. +..++.++|++.+++     +++++.++.-+|  |.++|.+   .| ..++++|+++++|.+..-.   +..    
T Consensus       145 ~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  219 (393)
T PRK05764        145 GEENGFKLTVEQLEAAITP-----KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSI  219 (393)
T ss_pred             CcccCCcCCHHHHHHhhCc-----cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccH
Confidence            632 235778889888754     367777776666  9999864   33 3468899999999876531   111    


Q ss_pred             -cCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          297 -RLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       297 -~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       .++....+.++++.|+-|+ ||.| |  +|+++.+++..+
T Consensus       220 ~~~~~~~~~~~i~~~s~SK~-~~~~-G~RiG~i~~~~~~~~  258 (393)
T PRK05764        220 ASLSPELRDRTITVNGFSKA-YAMT-GWRLGYAAGPKELIK  258 (393)
T ss_pred             HHcCCCCcCCEEEEecCccc-ccCc-cceeEEEecCHHHHH
Confidence             1111223467899999999 8755 7  798887765443

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.21  E-value=1.9e-10  Score=114.60  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHHHHHHHhhCCCCCCCeEE--EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTP-NYRDAMMLVGESYPFFRGNFYM--TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTs-naTeAlnlva~sl~~~~Gd~iv--S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      +....+.++++++.+.++|+.+ ++|+|+|.+ |+|.++..+..++ +.+|+.++  ...++=..-|...|++.| .|..
T Consensus        44 s~~F~~i~~~~~~~Lr~Ll~~P-~~y~Vlfl~GggT~~~ea~~~Nl-l~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~  120 (364)
T PRK12462         44 SSWFSSLLAQAEADLRDLLGIP-DEYGVVFLQGGSSLQFSMIPMNF-SRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRV  120 (364)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEeccHHHHHHHHHHHc-CCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceE
Confidence            4455667899999999999994 568888885 5999999988887 45677432  223321333445566666 4554


Q ss_pred             EeCCCC---CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCC
Q 035915          228 APEAWL---DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       228 vp~~~~---~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      +...+.   ....+.+++.  +.+     ....|.+++..+  |+.+|  .+  .+..++++++|++..+ |..|+|+++
T Consensus       121 ~~~~~~~~~~~~p~~~~~~--~~~-----d~~~v~~t~NETstGv~~~--~~--~~~~~~llvvD~sS~~-~s~pid~~~  188 (364)
T PRK12462        121 VWDGAASGYRTLPSLAELD--WDA-----RAPFRHYVSNETVEGLQFP--DA--AGLPDSPLIADMSSDF-MSRPFDVEA  188 (364)
T ss_pred             ecCcCCCCCCcCCCHHHhc--cCC-----CCcEEEEccCCCCceEecC--cc--cccCCCeEEEEcCchh-hCCCCChHH
Confidence            432111   1223444331  111     356788887764  99997  11  1235899999999999 999999998


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +  |.+.++.+|. +| |.|++++++|+++++.
T Consensus       189 ~--dvi~agsQKn-lg-P~Gltvvivs~~al~~  217 (364)
T PRK12462        189 Y--GMVYAHAQKN-LG-PAGVTVAIIRRALLER  217 (364)
T ss_pred             c--cEEEeecccc-CC-CCceEEEEECHHHHhh
Confidence            7  9999999999 88 9999999999998866

>PRK07337 aminotransferase; Validated

Probab=99.21  E-value=2.7e-10  Score=112.16  Aligned_cols=165  Identities=12%  Similarity=0.130  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+|+++    |  ++++  +|++|+|+|+|+++++..+ ..+||.|+ ....|..  ....++..|++++.+|.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~  143 (388)
T PRK07337         69 LAPLREAIAAWYARRFGLDVAPE--RIVVTAGASAALLLACLAL-VERGDEVLMPDPSYPC--NRHFVAAAEGRPVLVPS  143 (388)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChH--hEEEecCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--hHHHHHHcCCEEEEeec
Confidence            456788888876    4  4555  7999999999999999887 57899865 4445442  22334456899999988


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc--cCCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED--RLNLA  301 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~--~LDLs  301 (344)
                      +.. +..++.++|++.+++     +++++.++.-+|  |..++.+.+.    .++++++++++|-+-.-....  +..+.
T Consensus       144 ~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  218 (388)
T PRK07337        144 GPAERFQLTAADVEAAWGE-----RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSAL  218 (388)
T ss_pred             CCccCCcCCHHHHHhhcCc-----cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChh
Confidence            642 346888999888764     367777766666  9999874443    357899999999664310211  22222


Q ss_pred             CCCCcEE-EEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          302 LHRPDFV-LCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFv-v~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .++.+.+ +.|+.|. ||.| |  +|++++.+++.+
T Consensus       219 ~~~~~vi~~~S~SK~-~~~~-G~RiG~~~~~~~l~~  252 (388)
T PRK07337        219 SLGDDVITINSFSKY-FNMT-GWRLGWLVVPEALVG  252 (388)
T ss_pred             hccCCEEEEEechhh-cCCc-hhheeeeecCHHHHH
Confidence            3445554 6699999 8756 6  899998765543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.21  E-value=1.8e-10  Score=111.96  Aligned_cols=164  Identities=14%  Similarity=0.089  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+.+|+++|++++  +|+||+|+++++.+++.++ +++|+.++. .-.++  .....+...|+++..+|.+  ++
T Consensus        65 g~~~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~v~~~~p~y~--~~~~~~~~~g~~~~~~~~~--~~  137 (359)
T PRK03158         65 YAPELRTKVAKHLGVDEE--QLLFGAGLDEVIQMISRAL-LNPGTNTVMAEPTFS--QYRHNAIIEGAEVREVPLK--DG  137 (359)
T ss_pred             cHHHHHHHHHHHhCCCHH--HEEECCCHHHHHHHHHHHH-hCCCCEEEEcCCCHH--HHHHHHHHcCCeEEEEecC--CC
Confidence            356789999999999876  7999999999999998887 568888653 32222  2334455679999999986  35


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCc---CCccCCC---CCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVV---GEDRLNL---ALHR  304 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~---G~~~LDL---s~l~  304 (344)
                      .++.+++++.+++     +++++.+...+|  |.++|.+.+.+ ++.  +++++++|-+..-.   +..+..+   ...+
T Consensus       138 ~~d~~~l~~~~~~-----~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  212 (359)
T PRK03158        138 GHDLEAMLKAIDE-----QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYE  212 (359)
T ss_pred             CcCHHHHHHhcCC-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcC
Confidence            6788888877754     356777665566  99999977654 443  58999999998530   1111111   1234


Q ss_pred             CcEEEEccccCCCCCCCce--EEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKI--TCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~Gi--G~L~Vr~~~~~  334 (344)
                      -.+++.|+-|. ||.| |+  |+++..++..+
T Consensus       213 ~vi~~~S~SK~-~g~~-GlRiG~~v~~~~~~~  242 (359)
T PRK03158        213 NLIVLRTFSKA-YGLA-ALRVGYGIASEELIE  242 (359)
T ss_pred             CEEEEEechHh-hcCc-chhhehhcCCHHHHH
Confidence            56888899999 8855 74  99988766543

>PRK07324 transaminase; Validated

Probab=99.20  E-value=3.2e-10  Score=111.79  Aligned_cols=166  Identities=14%  Similarity=0.074  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHcC-CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC-C
Q 035915          158 EIQARNKVLKHCG-LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD-L  235 (344)
Q Consensus       158 le~AR~~IA~~Lg-a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~-g  235 (344)
                      ..+.|+.||++++ ++++  +|++|+|+++|+.+++.++ ..+||+++...-- .......++..|++++.+|.+..+ .
T Consensus        64 ~~~lr~~ia~~~~~~~~~--~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~-y~~~~~~~~~~g~~v~~v~~~~~~~~  139 (373)
T PRK07324         64 SPEFKEAVASLYQNVKPE--NILQTNGATGANFLVLYAL-VEPGDHVISVYPT-YQQLYDIPESLGAEVDYWQLKEENGW  139 (373)
T ss_pred             CHHHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCC-chhHHHHHHHcCCEEEEEecccccCC
Confidence            3468999999885 6665  7999999999999999888 5789986643211 112334566679999999986432 2


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc--cCCCCCC-CCc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED--RLNLALH-RPD  306 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~--~LDLs~l-~~D  306 (344)
                      .++.++|++.+++     +++++.++..+|  |.+++   ++.|. .|+++|+++++|.+..-....  ...+... +-.
T Consensus       140 ~~d~~~l~~~~~~-----~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~  214 (373)
T PRK07324        140 LPDLDELRRLVRP-----NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKG  214 (373)
T ss_pred             CCCHHHHHHhCCC-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCE
Confidence            4688889887764     467888887776  99999   54454 468899999999986421111  1111111 223


Q ss_pred             EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +++.|+-|. ||.| |  +|.++..++..+
T Consensus       215 I~~~s~SK~-~~~~-G~RiG~i~~~~~li~  242 (373)
T PRK07324        215 ISTNSMSKT-YSLP-GIRVGWIAANEEVID  242 (373)
T ss_pred             EEEecchhh-cCCc-cceeEEEecCHHHHH
Confidence            667799999 8856 6  699888655443

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.20  E-value=1.3e-10  Score=112.50  Aligned_cols=153  Identities=13%  Similarity=0.045  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      .+.|+.+++++|++++  +|+||+|+++++.+++..+  .+|+.++..-.++.  +...++..|++++.+|        +
T Consensus        50 ~~lr~~la~~~~~~~~--~i~~t~G~~~~i~~~~~~l--~~g~vl~~~p~y~~--~~~~~~~~g~~~~~~~--------d  115 (330)
T TIGR01140        50 DELRAAAAAYYGLPAA--SVLPVNGAQEAIYLLPRLL--APGRVLVLAPTYSE--YARAWRAAGHEVVELP--------D  115 (330)
T ss_pred             HHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHh--CCCeEEEeCCCcHH--HHHHHHHcCCEEEEeC--------C
Confidence            6789999999999876  7999999999999987765  46754444433332  3344566799988877        4


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccCCCC----CCCCcEE
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLNLA----LHRPDFV  308 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDLs----~l~~DFv  308 (344)
                      .++|++.+.+      ++++.+...+|  |.++|.+.+.    .|+++|+++++|.++.- .....++.    ..+-+++
T Consensus       116 ~~~l~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~i~  188 (330)
T TIGR01140       116 LDRLPAALEE------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFID-FTPDASLAPQAARFPGLVV  188 (330)
T ss_pred             HHHHHhhccc------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccc-cCCccchhhHhccCCCEEE
Confidence            5677777632      45666666666  9999975543    34789999999999863 21111222    1245699


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +.|++|+ ||.| |  +|+++++++..+
T Consensus       189 ~~S~SK~-~g~~-G~R~G~i~~~~~~~~  214 (330)
T TIGR01140       189 LRSLTKF-FGLA-GLRLGFVVAHPALLA  214 (330)
T ss_pred             EEecchh-hcCc-hhhhhheeCCHHHHH
Confidence            9999999 9856 5  699998776544

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.20  E-value=4.6e-10  Score=112.42  Aligned_cols=152  Identities=14%  Similarity=0.012  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC---HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE---LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~---~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..++--++++++.|+.    ..+.++++|.|+++++.++ +++||++++...+.   ...+...+...|+++++++.+..
T Consensus        65 ~~~~lE~~la~leg~~----~av~~sSG~aAi~~al~al-l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~  139 (384)
T PRK06434         65 TVQAFEEKYAVLENAE----HALSFSSGMGAITSAILSL-IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRL  139 (384)
T ss_pred             hHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHH-hCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCCh
Confidence            4455566699999984    2566667779999999887 78999976544332   22333455678999999987642


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                       ..+.       +++    .++++|.+.+.+|  +.+.|++.|.+ +|+++  ++||++++. +...-.+ .+++|++++
T Consensus       140 -~~~~-------l~~----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s-~~~~~pl-~~gaDivv~  203 (384)
T PRK06434        140 -NSLD-------FDP----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFAS-PYNQNPL-DLGADVVIH  203 (384)
T ss_pred             -hhee-------ecC----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCC-cccCCch-hcCCCEEEe
Confidence             1121       222    1478888887776  89999988865 68887  567999987 6552222 368999999


Q ss_pred             ccccCCCCCCCc--eEEEEEeC
Q 035915          311 NLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       311 S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      |+||+ ++++.+  -|+++.++
T Consensus       204 S~tK~-i~G~~d~~gG~vv~~~  224 (384)
T PRK06434        204 SATKY-ISGHSDVVMGVAGTNN  224 (384)
T ss_pred             ecccc-cCCCCCceEEEEecCc
Confidence            99999 887864  45555543

>PRK08912 hypothetical protein; Provisional

Probab=99.20  E-value=1.1e-09  Score=107.81  Aligned_cols=165  Identities=12%  Similarity=0.017  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.+++++    |  +++++ +|++|+|+|+|+.+++..+ ..+|+.|+ ....|.  .+...++..|++++.+|.+
T Consensus        66 ~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~p~y~--~~~~~~~~~g~~~~~~~~~  141 (387)
T PRK08912         66 PELRQAVAAHYARFQGLDLDPET-EVMVTSGATEALAAALLAL-VEPGDEVVLFQPLYD--AYLPLIRRAGGVPRLVRLE  141 (387)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcc-cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCch--hhHHHHHHcCCEEEEEecC
Confidence            34566666654    4  44432 6999999999999888877 46788864 343333  2344456679999999886


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc--CC---cc-CC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV--GE---DR-LN  299 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~--G~---~~-LD  299 (344)
                      ..+..++.++|++.+.+     +++++.++..+|  |.++|.+.   | ..|+++++++++|.+..-.  +.   .+ ..
T Consensus       142 ~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  216 (387)
T PRK08912        142 PPHWRLPRAALAAAFSP-----RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMT  216 (387)
T ss_pred             cccCcCCHHHHHHHhCc-----cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhh
Confidence            43456888999988864     356777775566  99999754   3 3358899999999987420  10   11 11


Q ss_pred             CCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +.. .+.++++.|+.|. ||.| |  +|++++.++..+
T Consensus       217 ~~~~~~~~i~~~S~SK~-~g~~-GlRiG~~~~~~~~~~  252 (387)
T PRK08912        217 LPGMRERTVKIGSAGKI-FSLT-GWKVGFVCAAPPLLR  252 (387)
T ss_pred             CCCccCceEEEeechhh-ccCc-CceeEEEecCHHHHH
Confidence            211 2457999999998 8855 7  899998776543

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.20  E-value=5.2e-10  Score=109.86  Aligned_cols=166  Identities=12%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.|++++    |.  ++++ +|++|+|+++++++++..+ ..+||.++ ....+..  ....++..|++++.+|.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~-~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~--~~~~~~~~G~~v~~v~~  144 (383)
T TIGR03540        69 MLAYRQAVADWYKRRFGVELDPET-EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPV--YRIGTLFAGGEPYEMPL  144 (383)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcc--hHHHHHhcCCEEEEEec
Confidence            345777777765    44  3332 6999999999999999887 57899864 3444432  22334557999999998


Q ss_pred             CCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +..+ ..++.+++++.+.+     ++++|.+..-+|  |..++.+.   | ..|+++++++++|-++.-.   +.....+
T Consensus       145 ~~~~g~~~d~~~l~~~~~~-----~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~  219 (383)
T TIGR03540       145 KEENGFLPDFDAIPEDIAK-----KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSF  219 (383)
T ss_pred             CcccCCccCHHHHHhhccc-----cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCc
Confidence            6432 34688888877754     367777765556  99999643   3 3358899999999998620   3233343


Q ss_pred             CCC----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 ALH----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..+    +..+++.|+=|. ||.| |  +|+++..+++.+
T Consensus       220 ~~~~~~~~~~i~~~SfSK~-~g~~-GlRiG~~i~~~~l~~  257 (383)
T TIGR03540       220 LEVDGAKDVGIEFHSLSKT-YNMT-GWRIGMAVGNADLIA  257 (383)
T ss_pred             ccCCCcccCEEEEEecccc-cCCc-cceeeEEeCCHHHHH
Confidence            222    234677788899 8855 7  999988766544

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.20  E-value=4.6e-10  Score=109.67  Aligned_cols=161  Identities=12%  Similarity=0.067  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.++++++++|.+ +  .|++|+| ++++..++.++ +.+|+.++ ....|... +.. +...|+++..++    
T Consensus        77 ~~l~~~l~~~l~~~~g~~-~--~i~~~sG-~~a~~~a~~~~-~~~gd~vi~~~~~~~~~-~~~-~~~~g~~~~~~~----  145 (385)
T TIGR01825        77 LRLHEELEEKLAKFKKTE-A--ALVFQSG-FNTNQGVLSAL-LRKGDIVLSDELNHASI-IDG-LRLTKATKKIYK----  145 (385)
T ss_pred             cHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHh-CCCCCEEEEEccccHHH-HHH-HHhcCCceEEeC----
Confidence            345688999999999964 2  5888877 55666666665 67899865 44444432 111 223466665543    


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------CCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------LNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------LDLs  301 (344)
                        .++.+++++.+.+.. ..++++|++..+.|  |.+.|++.|.+ ++++|+++++|.+|+. |..+         +++.
T Consensus       146 --~~d~~~l~~~l~~~~-~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  221 (385)
T TIGR01825       146 --HADMDDLDRVLRENP-SYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGS-GVMGEAGRGTVHHFGLE  221 (385)
T ss_pred             --CCCHHHHHHHHHhhc-cCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccc-cCcCCCCCccHhhcCCC
Confidence              246677877775421 12578888887654  99999987764 6999999999999987 6432         3443


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                       .+.||++.|++|+ ||.+ | |+++.+++..+
T Consensus       222 -~~~~i~~~s~sK~-~~~~-g-G~~~~~~~~~~  250 (385)
T TIGR01825       222 -DKVDIQVGTLSKA-IGVV-G-GYAAGHKELIE  250 (385)
T ss_pred             -cCCcEEEEeccHH-hhcC-C-CEEecCHHHHH
Confidence             5789999999999 8854 5 77776655433

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK03321 putative aminotransferase; Provisional

Probab=99.19  E-value=1.9e-10  Score=111.54  Aligned_cols=166  Identities=12%  Similarity=0.075  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..++.|+.+|+++|++++  +|++|+|+++++++++..+ +.+||.++...- ........++..|++++.+|.+. ++.
T Consensus        58 g~~~lr~~ia~~~~~~~~--~I~~~~G~~~~l~~~~~~~-~~~gd~Vli~~p-~y~~~~~~~~~~g~~~~~v~~~~-~~~  132 (352)
T PRK03321         58 GAVELRAALAEHLGVPPE--HVAVGCGSVALCQQLVQAT-AGPGDEVIFAWR-SFEAYPILVQVAGATPVQVPLTP-DHT  132 (352)
T ss_pred             cHHHHHHHHHHHhCcCHH--HEEECCCHHHHHHHHHHHh-cCCCCEEEeCCC-CHHHHHHHHHHcCCEEEEccCCC-CCC
Confidence            367899999999999876  6999999999999988876 578998764321 11112233456799999998864 356


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCc--CC-cc--CCCCCCCCc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVV--GE-DR--LNLALHRPD  306 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~--G~-~~--LDLs~l~~D  306 (344)
                      ++.+++++.+++     ++++|.++..+|  |.++|++.+.+ ++.  +++++++|.+..-.  +. .+  +..-+...+
T Consensus       133 ~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  207 (352)
T PRK03321        133 HDLDAMAAAITD-----RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN  207 (352)
T ss_pred             CCHHHHHHhhcc-----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence            788889888764     467887776666  99999977754 454  58999999988520  11 11  111111233


Q ss_pred             -EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          307 -FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       307 -Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       +++.|+=|. ||.| |  +|+++.++++.+
T Consensus       208 vi~~~S~SK~-~g~~-GlRiG~~v~~~~~~~  236 (352)
T PRK03321        208 VVVLRTFSKA-YGLA-GLRVGYAVGHPEVIA  236 (352)
T ss_pred             EEEEecchHH-hhhH-HHhhhhhcCCHHHHH
Confidence             556688998 8855 6  899998765544

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.19  E-value=4.1e-10  Score=108.90  Aligned_cols=160  Identities=13%  Similarity=0.141  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.|+.||+++|++++  +|++|+|+++++++++.++ +.+||.++ ..-.|.  .....++..|++++.+|.+. ++.+
T Consensus        63 ~~lr~aia~~~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~-~~~~  136 (353)
T PRK05387         63 DALRQAIAAYYGLDPE--QVFVGNGSDEVLAHAFLAF-FNHDRPLLFPDITYS--FYPVYAGLYGIPYEEIPLDD-DFSI  136 (353)
T ss_pred             HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEeCCCHH--HHHHHHHHcCCEEEEeecCC-CCCC
Confidence            6799999999999876  7999999999999999988 57899865 333332  23344566799999999864 3567


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh-CCcEEEecccccCcC-CccCCC-CCCCCcEEEEc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR-NSWHVLLDATALVVG-EDRLNL-ALHRPDFVLCN  311 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~-~g~~vlvDAaQa~~G-~~~LDL-s~l~~DFvv~S  311 (344)
                      +.++|++         .++++.++.-+|  |.++|.+.+.+ ++. +++++++|-+..-.+ ...+.+ ...+-.+++.|
T Consensus       137 d~~~l~~---------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S  207 (353)
T PRK05387        137 DVEDYLR---------PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQT  207 (353)
T ss_pred             CHHHHHh---------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEe
Confidence            8877652         134566655556  99999987765 444 389999998764212 111111 12244699999


Q ss_pred             cccCCCCCCC-ceEEEEEeCCCcc
Q 035915          312 LDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       312 ~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +.|. ||.|. .+|+++..++..+
T Consensus       208 ~SK~-~~~~GlR~G~~~~~~~~~~  230 (353)
T PRK05387        208 FSKS-RSLAGLRVGFAIGHPELIE  230 (353)
T ss_pred             hhHh-hcchhhhceeeecCHHHHH
Confidence            9998 87551 3899988765543

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.18  E-value=6e-10  Score=106.65  Aligned_cols=195  Identities=17%  Similarity=0.151  Sum_probs=142.7

Q ss_pred             ccchHHHHHHhhccCC--CCh--hhh--h-hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE
Q 035915          132 TQLEPSRLLDILTKKS--SFP--GSF--I-SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM  204 (344)
Q Consensus       132 v~~~~~~L~~~L~gns--s~~--g~~--a-s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv  204 (344)
                      +.++-+.|.++--|-|  .|.  |+.  . .-.+.+--+.+++|||++    .+=+|.||.+|=-.+..++- ++||.++
T Consensus        30 t~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D----~~R~t~GARe~KfavMhal~-~~gd~vV  104 (382)
T COG1103          30 TEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD----EVRVTAGAREAKFAVMHALC-KEGDWVV  104 (382)
T ss_pred             CHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCc----eeeecccchhhHHHHHHHhc-cCCCEEE
Confidence            3466677777633333  122  332  1 124666777799999995    58999999999888888773 5789876


Q ss_pred             EcCCcC-HHHHHHHHHcCCcEEEEEeCC-CCCCccCHHHHHHHhhhcCC--CCCeeEEEEeCcc-c-cccccHHHHHH-H
Q 035915          205 TIIGEE-LDYVREFASFKESKVILAPEA-WLDLRIKGSQLSQYFRRKCK--HTPKGLFSYPADI-N-GTRYSMHWISE-A  277 (344)
Q Consensus       205 S~~eH~-~~~ir~la~~~G~kV~~vp~~-~~~g~i~~~~L~~~l~~~~~--~~~t~LVa~~avS-N-G~i~Pl~~Ia~-a  277 (344)
                      .+---| ...+  .|++.|..|..+|.+ .++-.|+.+...+.|..-.+  ..+..|..++++. | |.+.+.+.++. |
T Consensus       105 ~D~~aHYttyv--AAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic  182 (382)
T COG1103         105 VDSLAHYTTYV--AAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKIC  182 (382)
T ss_pred             EcCcchHHHHH--HHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHH
Confidence            443323 3222  256679999999964 33456888877776653211  1346788889887 5 99999988875 6


Q ss_pred             HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          278 HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |+.|+++++.+|=.+ |..|++..+.++||++.|+||- ..+-.-+|+|-++.++.+.
T Consensus       183 ~e~gvPlllN~AYt~-Grmpvs~ke~g~DFiVgSGHKs-mAAs~PiGvl~~~eE~ae~  238 (382)
T COG1103         183 REYGVPLLLNCAYTV-GRMPVSGKEIGADFIVGSGHKS-MAASAPIGVLAMSEEWAEI  238 (382)
T ss_pred             HHcCCceEeecceee-ccccccccccCCCEEEecCccc-hhccCCeeEEeehhHHHHH
Confidence            999999999999999 9999999999999999999997 5544449999999887665

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.17  E-value=1.1e-10  Score=113.92  Aligned_cols=161  Identities=15%  Similarity=0.029  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.|+++|+++|++++  +|++|+|+++++++++.++. .+| +.++... .....+...++..|++++.+|.+. +..+
T Consensus        63 ~~Lr~aia~~~~~~~~--~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~-P~y~~y~~~~~~~g~~v~~v~~~~-~~~~  137 (354)
T PRK04635         63 PELINAYSAYAGVAPE--QILTSRGADEAIELLIRAFC-EPGQDSIACFG-PTYGMYAISAETFNVGVKALPLTA-DYQL  137 (354)
T ss_pred             HHHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcC-CChHHHHHHHHHcCCEEEEEecCC-CCCC
Confidence            5578999999999887  79999999999999999884 567 7765321 112224445667899999999864 3567


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-Hh-CCcEEEecccccCcCCcc---CCCCCC-CCcEEE
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HR-NSWHVLLDATALVVGEDR---LNLALH-RPDFVL  309 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~-~g~~vlvDAaQa~~G~~~---LDLs~l-~~DFvv  309 (344)
                      +.+.++. + +     +++++.++.-+|  |+++|.+.+.++ +. .++++++|.++.- -...   +++... +-=+++
T Consensus       138 ~~~~l~~-~-~-----~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~~iv~  209 (354)
T PRK04635        138 PLDYIEQ-L-D-----GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPNLVVL  209 (354)
T ss_pred             CHHHHHh-c-c-----CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCCEEEE
Confidence            7777752 3 2     467888876666  999999877654 43 3699999999754 2111   111111 111577


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      -|++|+ ||.| |  +|+++++++..+
T Consensus       210 ~S~SK~-~~l~-GlRlG~~i~~~~~~~  234 (354)
T PRK04635        210 RTLSKA-FALA-GARCGFTLANEELIE  234 (354)
T ss_pred             echHHH-hhhh-HHHHhhhhCCHHHHH
Confidence            899999 8844 6  799998876554

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.17  E-value=9.8e-10  Score=108.99  Aligned_cols=156  Identities=11%  Similarity=0.028  Sum_probs=108.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEe
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAP  229 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp  229 (344)
                      .......+.++++|++.|+.    .++.++|+++|+.++...  +++||+++ +...+.  ...+.......++++.+. 
T Consensus        51 ~~~p~~~~le~~lA~leg~~----~~v~~~sG~aAi~~~l~~--l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~-  123 (364)
T PRK07269         51 TKNPTRAKLEETLAAIESAD----YALATSSGMSAIVLAFSV--FPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA-  123 (364)
T ss_pred             CCCccHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHH--hCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec-
Confidence            33345677888899999863    589999999999988753  47899865 433344  222222222223333221 


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCc
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~D  306 (344)
                             .+.+++++++++     +|++|.+...+|  |...+++.|.+ +|++|+++++|.+++. +...-.+ .+++|
T Consensus       124 -------~d~~~l~~~i~~-----~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~-~~~~~pl-~~gaD  189 (364)
T PRK07269        124 -------NTEEELIAAIEE-----DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS-PIYQRPI-ELGAD  189 (364)
T ss_pred             -------CCHHHHHHhcCc-----CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhCCc
Confidence                   356788888875     478888877776  99999987765 6999999999999877 5432223 46899


Q ss_pred             EEEEccccCCCCCCCc--eEEEEEeC
Q 035915          307 FVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++++|++|+ ++++..  .|+++.++
T Consensus       190 ivv~S~tK~-l~g~~d~~gG~v~~~~  214 (364)
T PRK07269        190 IVLHSATKY-LSGHNDVLAGVVVTND  214 (364)
T ss_pred             EEEecCcee-ccCCCcccceEEEeCc
Confidence            999999999 887755  45555543

>PRK09265 aminotransferase AlaT; Validated

Probab=99.15  E-value=1.6e-09  Score=107.65  Aligned_cols=159  Identities=12%  Similarity=0.106  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.+|+++      |++++  +|+||+|+++++.+++..+ +.+||.|+ +...|..  +...++..|.+++.++.+
T Consensus        75 ~~lr~~ia~~~~~~~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~v~~~~~  149 (404)
T PRK09265         75 FSARKAIMQYYQQKGIPDVDVD--DIYIGNGVSELIVMAMQAL-LNNGDEVLVPAPDYPL--WTAAVSLSGGKPVHYLCD  149 (404)
T ss_pred             HHHHHHHHHHHhccCCCCCCcc--cEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCCcC--hHHHHHHcCCEEEEEecc
Confidence            46888888887      77776  7999999999999999887 57899854 5555542  333344568888877765


Q ss_pred             CC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc---CCccCCCC
Q 035915          232 WL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       232 ~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      .. +..++.++|++.+++     +++++.+..-+|  |.++|   +++|. .++++|+++++|-+..-.   +.....+.
T Consensus       150 ~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  224 (404)
T PRK09265        150 EEAGWFPDLDDIRSKITP-----RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIA  224 (404)
T ss_pred             cccCCCCCHHHHHHhccc-----cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHH
Confidence            32 345788889888754     367777776666  99999   54443 468899999999875320   11111222


Q ss_pred             CCCCc---EEEEccccCCCCCCCc--eEEEEEe
Q 035915          302 LHRPD---FVLCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       302 ~l~~D---Fvv~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      .+..+   +++.|+=|. ||.| |  +|+++..
T Consensus       225 ~~~~~~~vi~~~S~SK~-~~~p-GlRiG~~v~~  255 (404)
T PRK09265        225 SLAPDLLCVTFNGLSKA-YRVA-GFRVGWMVLS  255 (404)
T ss_pred             HcCCCceEEEEecchhh-ccCc-ccceEEEEEe
Confidence            22222   345677899 8767 6  7998863

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.15  E-value=1.2e-09  Score=108.27  Aligned_cols=166  Identities=10%  Similarity=0.047  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.||++++      +++++ +|++|+|+++|+.+++..+ ..+||.|+ ..-.+..  ....++..|++++.+|.
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~~~-~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~  146 (399)
T PRK07681         71 IQEFHEAVTEYYNNTHNVILNADK-EVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYTA--YETGIQMAGATSYYMPL  146 (399)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCC-eEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCccc--hHHHHHhcCCEEEEEec
Confidence            4568888888875      45522 7999999999999999887 46899865 3334431  23335567999999998


Q ss_pred             CCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +..+ ..++.+++.+.+.+     +++++.++.-+|  |.+++.+.+.    .|+++++++++|-+..-.   +.....+
T Consensus       147 ~~~~~~~~d~~~l~~~~~~-----~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~  221 (399)
T PRK07681        147 KKENDFLPDLELIPEEIAD-----KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISF  221 (399)
T ss_pred             CCCCCCcCCHHHHHHhccc-----cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCCh
Confidence            6432 24688888877753     367777774455  9999964432    358899999999998720   2222222


Q ss_pred             CC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 AL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..    .+..+++.|+.|. ||.| |  +|.++..+++.+
T Consensus       222 ~~~~~~~~~~i~~~S~SK~-~~~~-GlRiG~~i~~~~l~~  259 (399)
T PRK07681        222 LSVPGAKEVGVEINSLSKS-YSLA-GSRIGYMIGNEEIVR  259 (399)
T ss_pred             hhCCCCcccEEEEeecccc-cCCc-cceeEEEecCHHHHH
Confidence            21    1245788899999 8856 7  899988765544

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.15  E-value=6.1e-10  Score=110.18  Aligned_cols=164  Identities=13%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.|++++|++++  +|++|+|++++++++...+ +.+|++++ ..-.+.  .....++..|+++..+|.+. +..
T Consensus        88 ~~~lr~~ia~~~~~~~~--~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~--~y~~~~~~~g~~~~~v~~~~-~~~  161 (380)
T PLN03026         88 SRRLRAALAEDSGLESE--NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFG--MYVFDAAVNGAEVIKVPRTP-DFS  161 (380)
T ss_pred             HHHHHHHHHHHhCcChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH--HHHHHHHHcCCEEEEeecCC-CCC
Confidence            45799999999999876  7999999999999998887 46898865 333332  23344556799999998764 356


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCc-CC-ccCC-CCCCCCcEEEEc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVV-GE-DRLN-LALHRPDFVLCN  311 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~-G~-~~LD-Ls~l~~DFvv~S  311 (344)
                      ++.++|++.+..    .+++++.+...+|  |+++|.+.+.++-+..+++++|-+..-. +. ..+. +...+-.+++.|
T Consensus       162 ~d~~~l~~~~~~----~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~S  237 (380)
T PLN03026        162 LDVPRIVEAVET----HKPKLLFLTSPNNPDGSIISDDDLLKILELPILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRT  237 (380)
T ss_pred             cCHHHHHHHHhc----cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEEECcchhhcCCcchHHHHHhCCCEEEEec
Confidence            788999888732    1467777776666  9999998887653334899999997520 10 1111 222344688999


Q ss_pred             cccCCCCCCCc--eEEEEEeCCCc
Q 035915          312 LDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       312 ~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +-|. ||.| |  +|.++..++..
T Consensus       238 fSK~-~gla-GlRiGy~~~~~~~i  259 (380)
T PLN03026        238 FSKR-AGLA-GLRVGYGAFPLSII  259 (380)
T ss_pred             chHh-hcCc-cccceeeecCHHHH
Confidence            9999 8844 6  68777665544

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.14  E-value=1.2e-09  Score=109.89  Aligned_cols=158  Identities=12%  Similarity=0.028  Sum_probs=112.5

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~v  228 (344)
                      +......+..++.++.+-+.. +   .++++++++|++.++.++ +++||+++ +.-.+..  ..+..++++.|++|..+
T Consensus        60 R~gnPt~~~Le~~la~le~~~-~---~v~~sSG~aAi~~~l~al-l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v  134 (395)
T PRK05967         60 TRGTPTTDALCKAIDALEGSA-G---TILVPSGLAAVTVPFLGF-LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYY  134 (395)
T ss_pred             CCCChHHHHHHHHHHHHhCCC-C---EEEECcHHHHHHHHHHHh-cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEe
Confidence            333445566777788776653 2   455556899999998887 78999965 4444442  23345567789999988


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcC--CccCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVG--EDRLNLALH  303 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G--~~~LDLs~l  303 (344)
                      +.+      +.+.+++++++     +|++|.+...+|  +.+.|++.|.+ ||++|++++||.+++. +  ..|++   +
T Consensus       135 d~~------~~e~l~~al~~-----~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~-p~~~~pl~---~  199 (395)
T PRK05967        135 DPE------IGAGIAKLMRP-----NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWAT-PLYFRPLD---F  199 (395)
T ss_pred             CCC------CHHHHHHhcCc-----CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccC-ceecChhH---c
Confidence            643      23568888875     478999987666  99999988865 6999999999999987 5  33444   7


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++|+++-|.-|+ ++|-.+  .|++..++
T Consensus       200 GaDivv~S~tKy-~~Gh~d~~~G~v~~~~  227 (395)
T PRK05967        200 GVDISIHAATKY-PSGHSDILLGTVSANE  227 (395)
T ss_pred             CCCEEEEecccc-cCCCCCeeEEEEEcCH
Confidence            899999999998 442111  66555444

>PRK12414 putative aminotransferase; Provisional

Probab=99.14  E-value=3.4e-09  Score=104.65  Aligned_cols=167  Identities=10%  Similarity=0.068  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHcCCC--CCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLP--DDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~--p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..+..++.+++++|++  +++ +|++|+|+++|+.+++.++ +.+||.++ ....|..  ....++..|.+++.+|.+..
T Consensus        71 lr~~ia~~l~~~~g~~~~~~~-~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~  146 (384)
T PRK12414         71 LREALAEKTERLYGARYDPAS-EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDS--YAPIVRLQGATPVAIKLSPE  146 (384)
T ss_pred             HHHHHHHHHHHHhCCCCCCCC-cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccc--hHHHHHHcCCEEEEEecCcc
Confidence            4466777777778874  322 6999999999999999888 67899865 4444431  22334446899999998754


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc---CCccCCCCCC-
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV---GEDRLNLALH-  303 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~---G~~~LDLs~l-  303 (344)
                      +..++.+.|++.+++     ++++|.++.-+|  |.+++.+.   | ..|+++++++++|.+..-.   +.....+..+ 
T Consensus       147 ~~~~d~~~l~~~l~~-----~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~  221 (384)
T PRK12414        147 DFRVNWDEVAAAITP-----RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHR  221 (384)
T ss_pred             ccccCHHHHHhhcCc-----ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCc
Confidence            456889999988864     467777765556  99987543   3 3358899999999997530   1111112221 


Q ss_pred             ---CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          304 ---RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       304 ---~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                         +--+++.|+-|. ||.| |  +|++++.+++.+
T Consensus       222 ~~~~~~i~~~SfSK~-~~~p-GlRiG~~v~~~~l~~  255 (384)
T PRK12414        222 ELAERSVIVSSFGKS-YHVT-GWRVGYCLAPAELMD  255 (384)
T ss_pred             CccCcEEEEeccccc-ccCc-cceEEEEecCHHHHH
Confidence               123899999998 8756 6  799988766543

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.14  E-value=1.3e-09  Score=107.11  Aligned_cols=158  Identities=15%  Similarity=0.219  Sum_probs=111.9

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      ..|+.+|+++|++++  +|++|+|+++++++++.++ +++||.++. .-.+.  .....++..|++++.+|.+. +..++
T Consensus        75 ~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~--~~~~~~~~~g~~~~~v~~~~-~~~~~  148 (371)
T PRK05166         75 ALREAIAARTGVPAD--RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFP--LHEDYPTMMGARVERVTVTP-DLGFD  148 (371)
T ss_pred             HHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChH--HHHHHHHHcCCeEEEeecCC-CCCCC
Confidence            588999999999876  7999999999999999887 578998653 22322  23445566799999999864 35688


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH--hCCcEEEecccccCc--CCcc---CCC-CCCC-Cc
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH--RNSWHVLLDATALVV--GEDR---LNL-ALHR-PD  306 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar--~~g~~vlvDAaQa~~--G~~~---LDL-s~l~-~D  306 (344)
                      .+++++.+++     +++++.++..+|  |.++|.+.+.+ ++  +.++++++|.+..-.  +...   +.+ .... --
T Consensus       149 ~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~v  223 (371)
T PRK05166        149 LDALCAAVAR-----APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPW  223 (371)
T ss_pred             HHHHHHhhhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCE
Confidence            8999888865     357888876666  99999976654 33  247889999986520  1100   111 1111 23


Q ss_pred             EEEEccccCCCCCCC-ceEEEEEe
Q 035915          307 FVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      +++.|+=|. ||.|. .+|.+++.
T Consensus       224 i~i~SfSK~-~~l~GlRiG~~i~~  246 (371)
T PRK05166        224 IVLRTFSKA-YGLAGLRVGYGLVS  246 (371)
T ss_pred             EEEeechHh-hhcchhheeeeecC
Confidence            788999999 87562 37988774

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.13  E-value=7.3e-10  Score=109.67  Aligned_cols=165  Identities=10%  Similarity=0.022  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.||+++    |  +++++ .|++|+|+++|+.+++.++ +.+||.|+ ..-.+..  ....+...|++++.+|.+
T Consensus        76 ~~lr~aia~~~~~~~~~~~~~~~-~i~vt~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~  151 (394)
T PRK05942         76 ASFRQAITDWYHRRYGVELDPDS-EALPLLGSKEGLTHLALAY-VNPGDVVLVPSPAYPA--HFRGPLIAGAQIYPIILK  151 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCcCCCC-eEEEccChHHHHHHHHHHh-CCCCCEEEEcCCCCcc--hHHHHHHcCCEEEEeecC
Confidence            45777788776    4  34432 5889999999999999887 67899864 4444442  122234468999999886


Q ss_pred             CCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCc---CCccCC--
Q 035915          232 WLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVV---GEDRLN--  299 (344)
Q Consensus       232 ~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~---G~~~LD--  299 (344)
                      ..+ ..++.+++++.+.+     +++++.++.-+|  |.+++.+   .|. .|+++++++++|.+..-.   +.....  
T Consensus       152 ~~~~~~~d~~~l~~~~~~-----~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~  226 (394)
T PRK05942        152 PENDWLIDLSSIPEEVAQ-----QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLL  226 (394)
T ss_pred             CccCCccCHHHHHHhccc-----cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChh
Confidence            432 35888899887754     467777764455  9999964   333 358899999999985420   111112  


Q ss_pred             -CCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 -LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 -Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       +.. .+..+++.|+=|. ||.| |  +|.++..+++.+
T Consensus       227 ~~~~~~~~~i~~~SfSK~-~~~~-GlRiG~i~~~~~l~~  263 (394)
T PRK05942        227 EIPGAKDIGVEFHTLSKT-YNMA-GWRVGFVVGNRHIIQ  263 (394)
T ss_pred             hCCCccccEEEEecchhc-cCCh-hhheeeeecCHHHHH
Confidence             211 1234666777798 8755 6  899998776544

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.12  E-value=4.7e-09  Score=103.93  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHcC----C--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG----L--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg----a--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.++++++    .  +++ .+|++|+|+|+|+++++.++ +.+|+.++. .-.+..  +...++..|++++.+|.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~--~~~~~~~~g~~~~~~~~  144 (391)
T PRK07309         69 LLELRQAAADFVKEKYNLDYAPE-NEILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPG--YEPIVNLVGAEIVEIDT  144 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcc--hHHHHHHcCCEEEEEec
Confidence            3556667777663    3  222 27999999999999999887 578998653 333331  23334557999999987


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      +..+..++.+.|++.+...  ..+++++.++.-+|  |+.++.+.+.    .++++++++++|.+..-.   +....++.
T Consensus       145 ~~~~~~~d~~~l~~~~~~~--~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~  222 (391)
T PRK07309        145 TENDFVLTPEMLEKAILEQ--GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIA  222 (391)
T ss_pred             CCcCCcCCHHHHHHHhhcc--CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHH
Confidence            6433467889998888641  12467777765455  9999864332    358899999999997641   11112332


Q ss_pred             CCCCc--EEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          302 LHRPD--FVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       302 ~l~~D--Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      ....|  +++.|+.|. ||.| |  +|+++..+++.+.
T Consensus       223 ~~~~~~~i~~~S~SK~-~g~~-GlRvG~~v~~~~~~~~  258 (391)
T PRK07309        223 EYLPDQTILINGLSKS-HAMT-GWRIGLIFAPAEFTAQ  258 (391)
T ss_pred             HhccCCEEEEecChhh-ccCc-cceeEEEEeCHHHHHH
Confidence            22234  889999999 8866 6  8889987766543

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.11  E-value=1.3e-09  Score=107.01  Aligned_cols=166  Identities=11%  Similarity=0.063  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      +.+.|+.+++++    |.  ++++ .|++|+|+++|+++++..+ ..+||.++ ..-.+..  ....++..|++++.+|.
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~~~-~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~--~~~~~~~~g~~~~~v~~  146 (385)
T PRK09276         71 MLEFRKAVADWYKRRFGVELDPET-EVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYPV--YKIGTIFAGGEPYFMPL  146 (385)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcC--hHHHHHHcCCEEEEEec
Confidence            456777788877    43  4432 5999999999999999887 57899864 3333331  23335557999999988


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.. +..++.+++++.+..     +++++.+..-+|  |..+|.+.+.    .++++++++++|-+..-.   ++....+
T Consensus       147 ~~~~g~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  221 (385)
T PRK09276        147 KEENGFLPDLDAIPEDVAK-----KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSF  221 (385)
T ss_pred             CCCCCCcCCHHHHHHhccc-----cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCCh
Confidence            643 234678888777653     367777765456  9999974332    358899999999998630   2222222


Q ss_pred             CCC----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 ALH----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..+    +..+++.|+=|. ||.| |  +|+++..+++.+
T Consensus       222 ~~~~~~~~~~i~~~S~SK~-~g~~-GlRiG~~i~~~~l~~  259 (385)
T PRK09276        222 LEVPGAKDVGIEFHSLSKT-YNMT-GWRIGFAVGNADLIA  259 (385)
T ss_pred             hccCCCcCCEEEEecchhh-cCCc-chhheeeeCCHHHHH
Confidence            211    335777888899 8855 7  999988765544

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.11  E-value=3.3e-09  Score=104.84  Aligned_cols=154  Identities=11%  Similarity=0.006  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.++++|++.|++.    .++++|+++|+.++.. + +.+||+++ ....++  ...+...++..|++++.++.. 
T Consensus        52 pt~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~~-l-l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-  124 (366)
T PRK08247         52 PTRGVLEQAIADLEGGDQ----GFACSSGMAAIQLVMS-L-FRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA-  124 (366)
T ss_pred             chHHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHH-H-hCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC-
Confidence            356788899999999953    3667777899988764 3 46899865 444454  223455556689999888752 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                           +.+++++++++     ++++|.+...+|  |.+.+++.|.+ ++++|+++++|.+++. +.....+ .+++|+++
T Consensus       125 -----d~~~l~~~i~~-----~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~-~~~~~p~-~~g~di~i  192 (366)
T PRK08247        125 -----SLKAIEQAITP-----NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT-PVLQRPL-EEGADIVI  192 (366)
T ss_pred             -----CHHHHHHhccc-----CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc-ccccCch-hcCCcEEE
Confidence                 56778888765     467888765566  99999987764 6999999999999976 5432222 35799999


Q ss_pred             EccccCCCCCCCc--eEEEEEe
Q 035915          310 CNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      .|+.|+ ++++.+  .|+++.+
T Consensus       193 ~S~sK~-~~g~~d~~~G~iv~~  213 (366)
T PRK08247        193 HSATKY-LGGHNDVLAGLVVAK  213 (366)
T ss_pred             eeccee-ccCCCceeeeEEecC
Confidence            999999 886655  3544444

>PRK09082 methionine aminotransferase; Validated

Probab=99.10  E-value=2.9e-09  Score=105.07  Aligned_cols=168  Identities=12%  Similarity=0.043  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHcCCCCCC-CeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDE-YLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~e-y~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+...+.+.+++|++.+. .+|++|+|+|+|+.+++.++ ..+||.++ ....|..  ....++..|.++..+|.+..+
T Consensus        72 lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~--~~~~~~~~g~~~~~~~~~~~~  148 (386)
T PRK09082         72 LREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDS--YAPAIELAGGRAVRVALQPPD  148 (386)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchh--hHHHHHHcCCEEEEEecCccc
Confidence            3355566666677875432 26999999999999999887 56899865 3433331  233344569999999986444


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEecccccCc---CCccCCC---CC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATALVV---GEDRLNL---AL  302 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa~~---G~~~LDL---s~  302 (344)
                      ..++.+++++.+++     +++++.++..+|  |..++.+.+    ..|+++++++++|.+..-.   +.....+   ..
T Consensus       149 ~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~  223 (386)
T PRK09082        149 FRVDWQRFAAAISP-----RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE  223 (386)
T ss_pred             ccCCHHHHHHhcCc-----cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC
Confidence            67888999888864     367777765556  998776433    3468899999999987530   1111111   11


Q ss_pred             -CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 -HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 -l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       .+-.+++.|+-|. ||.| |  +|+++..+++.+
T Consensus       224 ~~~~~i~~~S~SK~-~~~~-G~RiG~iv~~~~l~~  256 (386)
T PRK09082        224 LRERAFVVSSFGKT-YHVT-GWKVGYCVAPAALSA  256 (386)
T ss_pred             ccCcEEEEeechhh-ccch-hhhhhhhhCCHHHHH
Confidence             2345888999999 8866 6  799987765543

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=99.09  E-value=3.1e-11  Score=125.35  Aligned_cols=171  Identities=32%  Similarity=0.496  Sum_probs=142.3

Q ss_pred             HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC---HHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          161 ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE---LDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       161 AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~---~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.++-.+|+.+.++|.++||.+-..+..+.++++++.-...+++.++|+   ++++++.|+.+|+++.-....|+...+
T Consensus       181 ik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp~~~l  260 (728)
T KOG2142|consen  181 IKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPKLLTIFGYETGAVLVMNRSAELKGGKTASAEFSWPMLYL  260 (728)
T ss_pred             eeeeeecccccCCceEEEEEeecccccccchHhhCCCcccchheeecCCCchhhHHHhhhhHhhcCccceeecccchHHH
Confidence            77888999999888999999999999999999999986555588999998   566777788889998888888887778


Q ss_pred             CHHHHHHHhhhcCC---CCCeeEEEEeCcc--ccccccHHHHHHHHhCCcEEEecccccCcCC--ccCCCCCCCCcEEEE
Q 035915          238 KGSQLSQYFRRKCK---HTPKGLFSYPADI--NGTRYSMHWISEAHRNSWHVLLDATALVVGE--DRLNLALHRPDFVLC  310 (344)
Q Consensus       238 ~~~~L~~~l~~~~~---~~~t~LVa~~avS--NG~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~--~~LDLs~l~~DFvv~  310 (344)
                      ..++|++.+...+.   +....|+.|+.++  +|.++++.|...+.+++|++++|+-|.- ..  .-+.++...|||..+
T Consensus       261 ~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG-~kdmd~yglS~f~Pdfqg~  339 (728)
T KOG2142|consen  261 LSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALALG-PKDMDSYGLSLFQPDFQGP  339 (728)
T ss_pred             HHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhccC-cchHhhhhhhccCccceee
Confidence            88889888875432   2235799999998  6999999999999999999999998874 21  123356678999999


Q ss_pred             ccccCCCCC--CCceEEEEEeCCCc
Q 035915          311 NLDNTQNAQ--PSKITCLLIRKKSF  333 (344)
Q Consensus       311 S~HK~l~G~--P~GiG~L~Vr~~~~  333 (344)
                      ++++. ||.  |.|.|||.|++.++
T Consensus       340 sf~fv-~g~d~psgfGcl~VkKs~i  363 (728)
T KOG2142|consen  340 SFYFV-FGRDDPSGFGCLEVKKSAI  363 (728)
T ss_pred             eEEEE-eccCCCCceeeeeeehhhh
Confidence            99999 887  67999999998764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.09  E-value=4.8e-09  Score=103.21  Aligned_cols=161  Identities=13%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHc-----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          158 EIQARNKVLKHC-----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       158 le~AR~~IA~~L-----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..+.|+.+++++     +++++  +|++|+|+|+|+++++..+ +.+|+.++. .-.+. + ....++..|++++.+|.+
T Consensus        68 ~~~lr~~ia~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~-~-~~~~~~~~g~~~~~v~~~  142 (397)
T PRK07568         68 IPELREAFAKYYKKWGIDVEPD--EILITNGGSEAILFAMMAI-CDPGDEILVPEPFYA-N-YNGFATSAGVKIVPVTTK  142 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCCCcc--eEEEcCChHHHHHHHHHHh-cCCCCEEEEecCCCc-c-HHHHHHHcCCEEEEeecC
Confidence            466888888887     46665  7999999999999999887 678998653 32222 1 223345579999998875


Q ss_pred             CCCCc--cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCc---CCcc---
Q 035915          232 WLDLR--IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVV---GEDR---  297 (344)
Q Consensus       232 ~~~g~--i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~---G~~~---  297 (344)
                      ..++.  .+.++|++.+++     ++++|.++..+|  |.+++.+   .|. .|+++++++++|.+..-.   +...   
T Consensus       143 ~~~g~~~~~~~~l~~~~~~-----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~  217 (397)
T PRK07568        143 IEEGFHLPSKEEIEKLITP-----KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSA  217 (397)
T ss_pred             cccCCCCCCHHHHHHhcCc-----cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccCh
Confidence            32332  245778887754     467888776666  9999863   343 358899999999987521   1111   


Q ss_pred             CCCCCC-CCcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          298 LNLALH-RPDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       298 LDLs~l-~~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      +++... +--+++.|+.|. ||.|. .+|+++..
T Consensus       218 ~~~~~~~~~~i~~~S~SK~-~~~~G~R~G~~~~~  250 (397)
T PRK07568        218 LSLEGLEDRVIIIDSVSKR-YSACGARIGCLISK  250 (397)
T ss_pred             hhcCCCcCCEEEEecchhh-ccCCCcceEEEecC
Confidence            122211 122778899999 87552 48888774

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.09  E-value=3.6e-09  Score=105.16  Aligned_cols=162  Identities=17%  Similarity=0.110  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ...+.|+.+++++|.      +++  +|++|+|+|+|+.+++.++. .+|++++ ...++.  .+...+...|++++.++
T Consensus        74 g~~~lr~~ia~~l~~~~~~~~~~~--~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~p~y~--~~~~~~~~~g~~~~~~~  148 (403)
T TIGR01265        74 GALAAREAVAEYLSSDLPGKLTAD--DVVLTSGCSQAIEICIEALA-NPGANILVPRPGFP--LYDTRAAFSGLEVRLYD  148 (403)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHH--HEEEecChHHHHHHHHHHhC-CCCCEEEEeCCCch--hHHHHHHHcCCEEEEec
Confidence            356789999999985      344  79999999999999999884 6888854 444433  23344566799998887


Q ss_pred             CCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCc---CCccCC
Q 035915          230 EAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVV---GEDRLN  299 (344)
Q Consensus       230 ~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~---G~~~LD  299 (344)
                      .+. .++.++.+++++++++     +++++.+++.+|  |..+|.   ++|. .|+++|+++++|.+..-.   +.....
T Consensus       149 ~~~~~~~~~d~~~l~~~~~~-----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~  223 (403)
T TIGR01265       149 LLPEKDWEIDLDGLEALADE-----KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP  223 (403)
T ss_pred             CCcccCCccCHHHHHHHhCc-----CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc
Confidence            643 2346888999888764     367777776666  999984   3443 468899999999987631   111122


Q ss_pred             CCCCCC---cEEEEccccCCCCCCC-ceEEEEEe
Q 035915          300 LALHRP---DFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       300 Ls~l~~---DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      +..+..   =.++.|+=|. |+.|. .+|++++.
T Consensus       224 ~~~~~~~~~vi~~~S~SK~-~~~pGlRiG~~v~~  256 (403)
T TIGR01265       224 MASFASIVPVLSLGGISKR-WVVPGWRLGWIIIH  256 (403)
T ss_pred             hhhhccCCcEEEEeecccc-cCCCcceEEEEEEe
Confidence            222222   2577899998 88782 38988874

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.09  E-value=3e-09  Score=105.86  Aligned_cols=160  Identities=13%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...+.++++|+++|.+ +  .|+|++| ++|+..++..+. ..+|+.+++. ..|... + ..++..|+++..++.+   
T Consensus        92 ~~~~Le~~la~~~g~~-~--~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~-~-~~~~~~g~~~~~~~~~---  162 (410)
T PRK13392         92 PHVLLERELADLHGKE-S--ALLFTSG-YVSNDAALSTLGKLLPGCVILSDALNHASM-I-EGIRRSGAEKQVFRHN---  162 (410)
T ss_pred             HHHHHHHHHHHHhCCC-C--EEEECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHHH-H-HHHHHcCCeEEEEeCC---
Confidence            4578889999999963 3  5777776 455555554442 3467876643 345432 2 2334568888776543   


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-cC--------CCCC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-RL--------NLAL  302 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~L--------DLs~  302 (344)
                         +.+++.+.+... ...++++|.+...+|  |.+.|++.|.+ ++++++++++|.+|+. |.. +-        ++. 
T Consensus       163 ---d~~~l~~~l~~~-~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~-g~~g~~g~g~~~~~~~~-  236 (410)
T PRK13392        163 ---DLADLEEQLASV-DPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAV-GLYGARGGGIAERDGLM-  236 (410)
T ss_pred             ---CHHHHHHHHHhc-cCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccc-cCcCCCCCchhhhccCC-
Confidence               234455555421 112578888888776  99999987765 6889999999999996 642 11        111 


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .++|+++.|+.|. ||.| | |++..+++..+
T Consensus       237 ~~~div~~tlsK~-~g~~-G-G~~~~~~~~~~  265 (410)
T PRK13392        237 DRIDMIQGTLAKA-FGCL-G-GYIAASADLID  265 (410)
T ss_pred             CCCcEEEEEChHh-hhcc-c-chhhcCHHHHH
Confidence            2579999999999 8866 5 66665554433

>PRK08363 alanine aminotransferase; Validated

Probab=99.08  E-value=4.4e-09  Score=104.13  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE-e
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILA-P  229 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v-p  229 (344)
                      ..+.|+.+++++    |  ++++  +|++|+|+|+|+.++..++ ..+||.|+ ....+..  ....++..|.+++.+ +
T Consensus        72 ~~~lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~v~~~~  146 (398)
T PRK08363         72 LPELREAIVKREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPP--YTGLVKFYGGVPVEYRT  146 (398)
T ss_pred             cHHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcc--hHHHHHHcCCEEEEecc
Confidence            456788888876    3  5555  7999999999999999888 67899865 3434332  233455568777766 4


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcCC---ccCC-
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGE---DRLN-  299 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~---~~LD-  299 (344)
                      .+..+..++.++|++.+++     +++++.+...+|  |..++.   +.|. .++++|+++++|.+..- -.   .... 
T Consensus       147 ~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~-~~~~~~~~~~  220 (398)
T PRK08363        147 IEEEGWQPDIDDIRKKITE-----KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDL-MTYEGKHVSP  220 (398)
T ss_pred             ccccCCcCCHHHHHhhCCc-----ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhh-hccCCcccCH
Confidence            4433345788888887754     367777776666  999994   4443 35889999999998653 11   0111 


Q ss_pred             --CCCCCCcEEEEccccCCCCCCC-ceEEEEE
Q 035915          300 --LALHRPDFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       300 --Ls~l~~DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                        +....--+++.|+.|+ |+.|. ++|++++
T Consensus       221 ~~~~~~~~vi~~~SfSK~-~~~~GlRiG~~~~  251 (398)
T PRK08363        221 GSLTKDVPVIVMNGLSKV-YFATGWRLGYIYF  251 (398)
T ss_pred             HHcCcCCcEEEEecchhc-cCCccceEEEEEE
Confidence              1111113567899999 77663 5899988

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.07  E-value=1.4e-09  Score=105.90  Aligned_cols=166  Identities=13%  Similarity=0.072  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      ..+.|+.+|+++|+++++ +|++|+|+++++.+++..+ ..+|+.++... .....+...++..|++++.+|.+. +..+
T Consensus        65 ~~~lr~~ia~~~~~~~~~-~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~-P~y~~~~~~~~~~g~~~~~i~~~~-~~~~  140 (356)
T PRK04870         65 AAALKAALRAAMGVPAGA-DVLLGNGSDELIQLLALAC-AKPGATVLAPE-PGFVMYRMSAKLAGLEFVGVPLTA-DFTL  140 (356)
T ss_pred             HHHHHHHHHHHhCcCCCC-cEEEcCCHHHHHHHHHHHh-cCCCCEEEECC-CCHHHHHHHHHHcCCEEEEecCCC-CCCC
Confidence            367899999999987533 7999999999999998877 46899865331 112234555677899999999874 4578


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-HhCCcEEEecccccCcCCcc-C-CCCCCCCcEEEEcc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HRNSWHVLLDATALVVGEDR-L-NLALHRPDFVLCNL  312 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~~g~~vlvDAaQa~~G~~~-L-DLs~l~~DFvv~S~  312 (344)
                      +.++|++.+...    +++++.++.-+|  |..+|.+.+.++ +..+.++++|.+........ + .+...+--+++.|+
T Consensus       141 d~~~l~~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~  216 (356)
T PRK04870        141 DLPAMLAAIAEH----RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTV  216 (356)
T ss_pred             CHHHHHHHhhcC----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecc
Confidence            999999888542    467777765556  999999877654 44478899998764212111 1 12223335889999


Q ss_pred             ccCCCCCCCc--eEEEEEeCCCcc
Q 035915          313 DNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       313 HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .|+  |.| |  +|+++..++..+
T Consensus       217 SK~--~~~-GlRiG~~i~~~~~i~  237 (356)
T PRK04870        217 SKL--GLA-GLRLGYLAGHPAWIA  237 (356)
T ss_pred             hhh--hhH-HHhhhhhhCCHHHHH
Confidence            994  645 6  999988765543

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.07  E-value=5.9e-09  Score=106.31  Aligned_cols=182  Identities=14%  Similarity=0.081  Sum_probs=117.6

Q ss_pred             ccchHHH-HHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC
Q 035915          132 TQLEPSR-LLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE  210 (344)
Q Consensus       132 v~~~~~~-L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~  210 (344)
                      +.+..++ |...+.|.-.|.|+..-   .+-.++++++||.+    .+++|+++|.|++++. .+.+++||++.+ ..| 
T Consensus        49 T~aMs~~q~a~~~~GDe~yag~~s~---~~lE~~va~~~G~~----~av~v~sGT~Al~ll~-~l~l~pGDeVps-n~~-  118 (450)
T TIGR02618        49 TNAMSDKQWAGLMMGDEAYAGSRNF---YHLERTVRELYGFK----YVVPTHQGRGAENLLS-QIAIKPGDYVPG-NMY-  118 (450)
T ss_pred             cHHHHHHHHHHhhhcchhhcCCCcH---HHHHHHHHHHHCCC----eEEEcCCHHHHHHHHH-HhCCCCcCEECC-cee-
Confidence            3444455 66666677556555543   34455689999984    4999999999999864 556789998732 222 


Q ss_pred             HHHHHHHHHcCCcEEEEEeCC---------CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccH---HHHH
Q 035915          211 LDYVREFASFKESKVILAPEA---------WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSM---HWIS  275 (344)
Q Consensus       211 ~~~ir~la~~~G~kV~~vp~~---------~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl---~~Ia  275 (344)
                      ......-....|+.+.-++.+         ..+|.++.++|++.++++. ...+.++++...+|   |...|+   +.|.
T Consensus       119 f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~-~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~  197 (450)
T TIGR02618       119 FTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG-ADKIPYICLAVTVNLAGGQPVSMANMREVR  197 (450)
T ss_pred             HHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhcccc-CcccCceEEEEecccCCCeeCCHHHHHHHH
Confidence            112222123457755555332         2357899999999997531 11344555543344   788765   4444


Q ss_pred             H-HHhCCcEEEecccccCcCCccC---------CCCC--------CCCcEEEEccccCCCCCCCceEEEEE
Q 035915          276 E-AHRNSWHVLLDATALVVGEDRL---------NLAL--------HRPDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       276 ~-ar~~g~~vlvDAaQa~~G~~~L---------DLs~--------l~~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      + |+++|+.+|+|||+++ |..-+         +.+-        -.+|.+++|+||- +++|.  |.+++
T Consensus       198 elA~~~Gl~vi~DaAR~~-gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd-~~~~~--GG~l~  264 (450)
T TIGR02618       198 ELCEAHGIKVFYDATRCV-ENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKD-CLVNI--GGFLC  264 (450)
T ss_pred             HHHHHcCCEEEEEccchh-hChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccC-CCCCC--ceEEE
Confidence            3 5889999999999999 75221         1110        2589999999999 88884  55555

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK07683 aminotransferase A; Validated

Probab=99.06  E-value=5.3e-09  Score=103.40  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |.  +++ .+|++|+|+|+|+.+++..+ +.+|+.|+.. ..+. + ....++..|++++.+|.
T Consensus        67 ~~~lr~~ia~~l~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~-~-~~~~~~~~g~~~~~~~~  142 (387)
T PRK07683         67 LLELRKAACNFVKDKYDLHYSPE-SEIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYP-G-YEPIIRLCGAKPVFIDT  142 (387)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcc-c-hHHHHHHcCCEEEEeec
Confidence            456788888877    43  443 15999999999999999887 5789986532 2222 1 23334556999999988


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEecccccCcCC---ccCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATALVVGE---DRLNLA  301 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa~~G~---~~LDLs  301 (344)
                      +..+..++.+++++.+++     +++++.++..+|  |..++.+.+    ..++++|+++++|.+..- ..   ....+.
T Consensus       143 ~~~~~~~~~~~l~~~~~~-----~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~  216 (387)
T PRK07683        143 RSTGFRLTAEALENAITE-----KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSE-LVYEQPHTSIA  216 (387)
T ss_pred             CcccCCCCHHHHHHhcCc-----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccc-ceeCCCcCChh
Confidence            654445677888887764     367787776666  999986433    335889999999999874 21   112222


Q ss_pred             CC----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          302 LH----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .+    +-.+++.|+=|. ||.| |  +|++++.+++.+
T Consensus       217 ~~~~~~~~vi~~~s~SK~-~~~p-GlRiG~i~~~~~l~~  253 (387)
T PRK07683        217 HFPEMREKTIVINGLSKS-HSMT-GWRIGFLFAPSYLAK  253 (387)
T ss_pred             hccCCcCCeEEEeecccc-ccCc-cceeEEEEcCHHHHH
Confidence            22    235889999999 8877 6  899988765443

>PRK07550 hypothetical protein; Provisional

Probab=99.04  E-value=1.2e-08  Score=100.51  Aligned_cols=165  Identities=13%  Similarity=0.065  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.+++++    |  ++++  +|++|+|+++|+.+++..+ ..+||.|+.. ..+. + ....++..|++++.++.+
T Consensus        70 ~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~-~-~~~~~~~~g~~~~~v~~~  144 (386)
T PRK07550         70 PELREAYAAHYSRLYGAAISPE--QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYF-N-HKMWLDMLGIRPVYLPCD  144 (386)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCc-c-hHHHHHhcCCEEEEEecC
Confidence            44555555555    4  4444  7999999999999999988 4689986533 2222 1 122345579999999986


Q ss_pred             C-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCc---CCccCCCC
Q 035915          232 W-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       232 ~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      . .+..++.++|++.++.     +++++.+..-+|  |.++|.+   .|. .++++|+++++|.+.+-.   +..+..+.
T Consensus       145 ~~~~~~~~~~~l~~~~~~-----~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~  219 (386)
T PRK07550        145 EGPGLLPDPAAAEALITP-----RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLF  219 (386)
T ss_pred             CCcCCCCCHHHHHHHhcc-----cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchh
Confidence            3 2345688889888864     355655554556  9999964   343 358899999999986520   11111111


Q ss_pred             -C--CC-CcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          302 -L--HR-PDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       302 -~--l~-~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                       .  .+ -.+++.|+.|. ||.|. ++|+++..++..+
T Consensus       220 ~~~~~~~~~i~~~S~SK~-~g~~G~RiG~i~~~~~~~~  256 (386)
T PRK07550        220 ADPDWDDTLVHLYSFSKS-YALTGHRVGAVVASPARIA  256 (386)
T ss_pred             hCCCccccEEEEecchhh-ccCcccceEeeecCHHHHH
Confidence             1  11 24678999998 87562 3999988765543

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.04  E-value=6.1e-10  Score=107.66  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=121.5

Q ss_pred             cchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHH
Q 035915          133 QLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELD  212 (344)
Q Consensus       133 ~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~  212 (344)
                      .+..+.+.....+...|..   ....++++++|+++||.+    ..+|++++|.|..+++..+. ++++.++....-|..
T Consensus         9 ~~m~~a~~~a~~gd~~Yg~---D~~~~~l~~~i~~l~g~e----~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~aHi~   80 (290)
T PF01212_consen    9 PAMLEAMAAANVGDDAYGE---DPTTARLEERIAELFGKE----AALFVPSGTMANQLALRAHL-RPGESVICADTAHIH   80 (290)
T ss_dssp             HHEEHHHHHTTSB-CCTTS---SHHHHHHHHHHHHHHTSS----EEEEESSHHHHHHHHHHHHH-HTTEEEEEETTEHHH
T ss_pred             HHHHHHHHccccCCcccCC---ChhHHHHHHHHHHHcCCC----EEEEeCCCChHHHHHHHHHH-hcCCceeccccceee
Confidence            3344445444444433322   335678899999999984    46899999999999888775 567776544332211


Q ss_pred             --HHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCC-CCCeeEEEEeCccc---cccccHHHHHH----HHhCCc
Q 035915          213 --YVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN---GTRYSMHWISE----AHRNSW  282 (344)
Q Consensus       213 --~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN---G~i~Pl~~Ia~----ar~~g~  282 (344)
                        .-...+...|+++..++.+. +|.++.++|++.+..... ..++++|+++..+|   |++++++++.+    ||++|+
T Consensus        81 ~~E~ga~~~~~G~~~~~l~~~~-~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl  159 (290)
T PF01212_consen   81 FDETGAIEELSGAKLIPLPSDD-DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGL  159 (290)
T ss_dssp             HSSTTHHHHHTTCEEEEEBECT-GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred             eeccchhhHhcCcEEEECCCcc-cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCce
Confidence              00112223699999888653 389999999999876321 13578999997765   99999987754    488999


Q ss_pred             EEEeccccc------CcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          283 HVLLDATAL------VVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       283 ~vlvDAaQa------~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      .+|+|+|=.      . +...-++. ..+|.+++|++|- +|.| +=++|..+++.+
T Consensus       160 ~lhmDGARl~~a~~~~-~~~~~e~~-~~~D~v~~~~tK~-~g~~-~Gavl~~~~~~i  212 (290)
T PF01212_consen  160 PLHMDGARLANAAAAL-GVSLAEIA-AGADSVSFGGTKN-GGAP-GGAVLAGNKEFI  212 (290)
T ss_dssp             EEEEEETTHHHHHCHH-HHHHHHHH-TTSSEEEEETTST-T-SS-SEEEEEESHHHH
T ss_pred             EEEEehhhHHHhhhcc-cccHHHHh-hhCCEEEEEEEcc-cccc-cceEEEechHHH
Confidence            999999932      3 33333333 4799999999998 7767 445666666543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.04  E-value=6.8e-09  Score=105.57  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=118.4

Q ss_pred             HHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHH
Q 035915          139 LLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFA  218 (344)
Q Consensus       139 L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la  218 (344)
                      |..++.+..+|.++.-   +.+.|+.|++++|.+    .+++|+|+|+|+.++...+ .++||++++..  +....+...
T Consensus        39 ~~a~~~gd~~Y~~~~g---~~~Leeaia~~~g~~----~vv~t~~Gt~Al~la~~al-~~pGD~V~~~~--~f~~~~~~i  108 (431)
T cd00617          39 WAAMMLGDEAYAGSKS---FYDLEDAVQDLFGFK----HIIPTHQGRGAENILFSIL-LKPGRTVPSNM--HFDTTRGHI  108 (431)
T ss_pred             HHHHHhCCCccCCCCC---HHHHHHHHHHHHCCC----eEEEcCCHHHHHHHHHHHh-CCCCCEEccCC--cccchHHHH
Confidence            4444556655655443   345777899999984    5999999999999988877 67899875321  111112223


Q ss_pred             HcCCcEEEEEeCCCC---------CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHH---H-HHHhCCc
Q 035915          219 SFKESKVILAPEAWL---------DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWI---S-EAHRNSW  282 (344)
Q Consensus       219 ~~~G~kV~~vp~~~~---------~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~I---a-~ar~~g~  282 (344)
                      ...|++.+.++.+..         .+.+|.++|++.++++. ..++++|.+...+|   |...+++.+   . .|+++|+
T Consensus       109 ~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~-~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi  187 (431)
T cd00617         109 EANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG-AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGI  187 (431)
T ss_pred             HhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCccc-CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            446888888877521         35689999999997531 12366776654444   888887654   3 3589999


Q ss_pred             EEEecccccCcCCc-----------cCCCCC------CCCcEEEEccccCCCCCCCceE-EEEEeC
Q 035915          283 HVLLDATALVVGED-----------RLNLAL------HRPDFVLCNLDNTQNAQPSKIT-CLLIRK  330 (344)
Q Consensus       283 ~vlvDAaQa~~G~~-----------~LDLs~------l~~DFvv~S~HK~l~G~P~GiG-~L~Vr~  330 (344)
                      +++.|++|++ +..           ...+.+      ...|.+++|+||- ++.|  +| +++.++
T Consensus       188 ~li~DaAr~~-~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~-~~~~--~GG~i~~~d  249 (431)
T cd00617         188 PVVLDAARFA-ENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKD-GLVN--IGGFLALRD  249 (431)
T ss_pred             EEEEEchhhH-hhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecC-CCCc--cceEEEeCc
Confidence            9999999986 421           112211      1489999999997 5555  46 455554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07777 aminotransferase; Validated

Probab=99.04  E-value=1.7e-08  Score=99.45  Aligned_cols=164  Identities=13%  Similarity=0.024  Sum_probs=108.7

Q ss_pred             HHHHHHHH----HcCCC--CCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          160 QARNKVLK----HCGLP--DDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       160 ~AR~~IA~----~Lga~--p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      +.|+.+++    .+|.+  +++ +|++|+|+|+|+.+++.++ ..+||.++. ...|+.  ....++..|.+++.+|.+.
T Consensus        65 ~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p~y~~--~~~~~~~~g~~~~~~~~~~  140 (387)
T PRK07777         65 ELRAAIAAQRRRRYGLEYDPDT-EVLVTVGATEAIAAAVLGL-VEPGDEVLLIEPYYDS--YAAVIAMAGAHRVPVPLVP  140 (387)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC-cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--hHHHHHHCCCEEEEeecCC
Confidence            34555554    45654  332 5999999999999988877 468888653 333331  2233445688888888764


Q ss_pred             C--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEecccccCc---CC--ccCC
Q 035915          233 L--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATALVV---GE--DRLN  299 (344)
Q Consensus       233 ~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa~~---G~--~~LD  299 (344)
                      .  +..++.++|++.+++     ++++|.++..+|  |..++.+.+    ..++++++++++|-+..-.   +.  .++.
T Consensus       141 ~~~~~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~  215 (387)
T PRK07777        141 DGRGFALDLDALRAAVTP-----RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLA  215 (387)
T ss_pred             ccCCCcCCHHHHHHhcCc-----ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHh
Confidence            2  234788999888764     367777765556  999886433    3458899999999887530   11  1221


Q ss_pred             -CCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 -LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 -Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       +.. .+.++++.|+.|. ||.| |  +|+++..+++.+
T Consensus       216 ~~~~~~~~~i~~~S~SK~-~g~~-GlRiG~~~~~~~l~~  252 (387)
T PRK07777        216 TLPGMRERTVTISSAAKT-FNVT-GWKIGWACGPAPLIA  252 (387)
T ss_pred             hCCCCcCcEEEEeechhh-ccCc-CceeEEEecCHHHHH
Confidence             111 3468999999999 8866 7  798888765543

>PRK07682 hypothetical protein; Validated

Probab=99.04  E-value=3.4e-09  Score=103.91  Aligned_cols=166  Identities=7%  Similarity=0.021  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+|++++      +++++ +|++|+|+++|+.+++.++ .++|+.++ ....|+  .....++..|.++..++.
T Consensus        59 ~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~l-~~~gd~vl~~~p~y~--~~~~~~~~~g~~~~~~~~  134 (378)
T PRK07682         59 LLELRQEIAKYLKKRFAVSYDPND-EIIVTVGASQALDVAMRAI-INPGDEVLIVEPSFV--SYAPLVTLAGGVPVPVAT  134 (378)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCch--hhHHHHHHcCCEEEEeec
Confidence            4567777887774      34432 6999999999999999887 57899865 344443  123334556888888886


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc---c---
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED---R---  297 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~---~---  297 (344)
                      +.. +..++.+.|++.+.+     +++++.+..-+|  |..+|.+.+   . .|+++++++++|.++.- ...   .   
T Consensus       135 ~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~  208 (378)
T PRK07682        135 TLENEFKVQPAQIEAAITA-----KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAE-LTYDEAYTSF  208 (378)
T ss_pred             CCccCCCCCHHHHHhhcCc-----ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhh-cccCCCCCCh
Confidence            532 245788999888764     356666654455  999986433   3 35789999999999774 221   0   


Q ss_pred             CCCCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          298 LNLAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       298 LDLs~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      ..+.. ..-.+++.|+-|. ||.| |  +|+++..+++.+.
T Consensus       209 ~~~~~~~~~~i~~~S~SK~-~~~~-GlR~G~~~~~~~~i~~  247 (378)
T PRK07682        209 ASIKGMRERTILISGFSKG-FAMT-GWRLGFIAAPVYFSEA  247 (378)
T ss_pred             hhcccccCCEEEEecCccc-ccCh-hhhhhhhhcCHHHHHH
Confidence            11111 1346889999999 8866 7  9999987765543

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.03  E-value=1e-08  Score=104.35  Aligned_cols=155  Identities=10%  Similarity=-0.026  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC-H-HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE-L-DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~-~-~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ..++.-.+.+|++.|+.    ..+.|+|++.|+.+++.++ +++||+|++ ...+. . ..+.....+.|+++.++..  
T Consensus        61 Ptv~~lE~~la~leg~~----~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~--  133 (432)
T PRK06702         61 PTLAAFEQKLAELEGGV----GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP--  133 (432)
T ss_pred             cHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC--
Confidence            35677788899999984    2688999999999988877 689999764 43343 1 2223334667999988853  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                         .++.+++++++++     +|++|.+...+|  +.++|++.|.+ ||++|+.+++|++-+. +.. .+.-++++|.++
T Consensus       134 ---~~d~~~l~~~I~~-----~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~t-P~~-~~pl~~GADIvv  203 (432)
T PRK06702        134 ---NLTADEIVALAND-----KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLAT-PYL-CQAFEHGANIIV  203 (432)
T ss_pred             ---CCCHHHHHHhCCc-----CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCc-hhh-CChhhcCCCEEE
Confidence               3567889999876     367777765566  99999988865 6999999999999765 311 122257899999


Q ss_pred             EccccCCCCCCC-ceEEEEE
Q 035915          310 CNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       310 ~S~HK~l~G~P~-GiG~L~V  328 (344)
                      -|+-|+ ++|.. ++|.+++
T Consensus       204 ~S~TKy-~~Ghsd~l~G~v~  222 (432)
T PRK06702        204 HSTTKY-IDGHASSLGGIVI  222 (432)
T ss_pred             Eccccc-cCCCcceeceEEE
Confidence            999999 77765 5666665

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.03  E-value=9.9e-09  Score=102.11  Aligned_cols=157  Identities=12%  Similarity=0.098  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-CCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-FRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..++.++++|+++|++ .  .++|++|+ +|+..+...+.. .+|+.|++ ..+|... +.. .+..|.++..++..   
T Consensus        91 ~~~~le~~la~~~g~~-~--~~~~~SG~-~An~~ai~~l~~~~~g~~I~~~~~~H~s~-~~~-~~~~g~~~~~~~~~---  161 (406)
T PRK13393         91 YHVLLEAELADLHGKE-A--ALLFTSGY-VSNWAALSTLGSRLPGCVILSDELNHASM-IEG-IRHSRAEKRIFRHN---  161 (406)
T ss_pred             HHHHHHHHHHHHhCCC-c--EEEeCCcH-HHHHHHHHHhhcCCCCCEEEEccchhHHH-HHH-HHHcCCeEEEeCCC---
Confidence            5688899999999973 2  57777665 566665554432 25777665 4555521 111 23357777776642   


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC-ccC--------CCCC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE-DRL--------NLAL  302 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~-~~L--------DLs~  302 (344)
                         +.+++++.+... ...++++|++.+++|  |.++|++.|.+ ++++|+++++|.+|++ |. .+.        ++. 
T Consensus       162 ---d~~~l~~~l~~~-~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~-g~~g~~G~g~~~~~~~~-  235 (406)
T PRK13393        162 ---DPADLERKLSDL-DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAV-GLYGPRGGGIAEREGLA-  235 (406)
T ss_pred             ---CHHHHHHHHHhc-cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCchhhhcCCC-
Confidence               345666666421 112468888887775  99999988865 6899999999999996 65 221        111 


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      .++|.++.++=|. ||.+ | |+++.+++
T Consensus       236 ~~~~i~~~tlsKa-~g~~-G-G~~~~~~~  261 (406)
T PRK13393        236 DRLTIIEGTLAKA-FGVM-G-GYITGSAA  261 (406)
T ss_pred             CCCeEEEEeCchh-hccc-C-ceeeCCHH
Confidence            2368888999999 8854 4 66654443

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.03  E-value=1.3e-08  Score=100.87  Aligned_cols=195  Identities=12%  Similarity=0.076  Sum_probs=116.7

Q ss_pred             CCCcCCCCCCcccccchHHHHHHhhccCCCChh-hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-
Q 035915          119 TPSFGSNLPDLDRTQLEPSRLLDILTKKSSFPG-SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-  196 (344)
Q Consensus       119 ~~~~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g-~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-  196 (344)
                      .+|.|-. +....+++..+.+...-.+.+.+.. ........+.++++++++|.+ +   .+|++++++|+..++..+. 
T Consensus        53 n~ylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~-~---~l~~~sG~~an~~ai~~l~~  127 (402)
T TIGR01821        53 NDYLGMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKE-S---ALVFTSGYVANDATLATLAK  127 (402)
T ss_pred             cCcCCCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCC-e---EEEECchHHHHHHHHHHhhC
Confidence            4455655 2222444445555443222221111 112335688999999999963 2   4555556888776666543 


Q ss_pred             CCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH
Q 035915          197 FFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW  273 (344)
Q Consensus       197 ~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~  273 (344)
                      +.+++.+++. ..|... +. -++..|+++..++..      +.+++++.++.. ....+++|.+...+|  |.+.|++.
T Consensus       128 ~~~~~~v~~~~~~h~s~-~~-~~~~~g~~~~~~~~~------d~~~l~~~l~~~-~~~~~~~v~~e~~~~~~G~~~~l~~  198 (402)
T TIGR01821       128 IIPGCVIFSDELNHASM-IE-GIRHSGAEKFIFRHN------DVAHLEKLLQSV-DPNRPKIIAFESVYSMDGDIAPIEE  198 (402)
T ss_pred             CCCCCEEEEcchHhHHH-HH-HHHHcCCeEEEECCC------CHHHHHHHHHhc-cCCCCeEEEEcCCCCCCCCccCHHH
Confidence            3357776654 444321 11 223457777655432      456677777531 112468888887765  99999987


Q ss_pred             HHH-HHhCCcEEEecccccCcCCc-cC--------CCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          274 ISE-AHRNSWHVLLDATALVVGED-RL--------NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       274 Ia~-ar~~g~~vlvDAaQa~~G~~-~L--------DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      |.+ ++++|+++++|.+|++ |.. +.        ++. .++|+++.++-|. ||.+ | |+++.+++.
T Consensus       199 i~~l~~~~~~~livDea~~~-G~~g~~g~g~~~~~~~~-~~~div~~t~sKa-~g~~-G-G~i~~~~~~  262 (402)
T TIGR01821       199 ICDLADKYGALTYLDEVHAV-GLYGPRGGGIAERDGLM-HRIDIIEGTLAKA-FGVV-G-GYIAASRKL  262 (402)
T ss_pred             HHHHHHHcCCEEEEeCcccc-cccCCCCCccchhccCC-CCCeEEEEechhh-hccC-C-ceeecCHHH
Confidence            764 6899999999999997 642 11        111 2479999999999 8854 4 656555443

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.02  E-value=1.2e-08  Score=101.15  Aligned_cols=162  Identities=10%  Similarity=0.038  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .....+.++++|+++|.+ +  .++|++| ++|+..++..+ .+.+++.+++..-||...+.. ++..|+++..++.+  
T Consensus        90 ~~~~~~l~~~la~~~g~~-~--~~~~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~-~~~~~~~~~~~~~~--  162 (407)
T PRK09064         90 NHYHVELERELADLHGKE-A--ALVFTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEG-IRRSRCEKHIFRHN--  162 (407)
T ss_pred             HHHHHHHHHHHHHHhCCC-c--EEEECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH-HHHcCCcEEEECCC--
Confidence            345688999999999952 3  4666665 45544433332 234566666554344222222 23346666555432  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-c--------CCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-R--------LNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~--------LDLs  301 (344)
                          +.++|++.++.. ...++++|.+..+.|  |.+.|++.|.+ ++++|+++++|.+|+. |.. +        .++.
T Consensus       163 ----d~~~le~~l~~~-~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~-G~~g~~g~g~~~~~~~~  236 (407)
T PRK09064        163 ----DVAHLEELLAAA-DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAV-GMYGPRGGGIAERDGLM  236 (407)
T ss_pred             ----CHHHHHHHHHhc-cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcc-cccCCCCCChHHhcCCC
Confidence                456777777531 112467888887765  99999988765 6899999999999986 542 1        1221


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                       ..+|+++.++.|. ||. .| |+++.+++..
T Consensus       237 -~~~div~~t~sKa-~g~-~G-G~~~~~~~~~  264 (407)
T PRK09064        237 -DRIDIIEGTLAKA-FGV-MG-GYIAGSAALV  264 (407)
T ss_pred             -CCCeEEEEecchh-hhc-cC-ceEecCHHHH
Confidence             2579999999999 884 45 7776665543

>PLN00175 aminotransferase family protein; Provisional

Probab=99.02  E-value=2.2e-08  Score=100.42  Aligned_cols=164  Identities=12%  Similarity=0.055  Sum_probs=111.9

Q ss_pred             HHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          160 QARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       160 ~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      +.|+.+++++    |  +++++ +|++|+|+|+|+.+++.++ +.+||.|+. .-.|.  .+...++..|++++.+|.+.
T Consensus        95 ~Lr~aia~~~~~~~g~~~~~~~-~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~  170 (413)
T PLN00175         95 ELNSAIAERFKKDTGLVVDPEK-EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYD--SYEATLSMAGAKIKTVTLRP  170 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC-CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCch--hHHHHHHHcCCEEEEEECCc
Confidence            3555565554    4  34432 5999999999999988877 578998653 33322  23333455799999999864


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCC---ccCCCCC-
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGE---DRLNLAL-  302 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~---~~LDLs~-  302 (344)
                      .+..++.++|++.+.+     +++++.++.-+|  |..++.+.+.    .++++++++++|-+..- -.   ....+.. 
T Consensus       171 ~~~~~~~~~l~~~~~~-----~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~-l~~~~~~~s~~~~  244 (413)
T PLN00175        171 PDFAVPEDELKAAFTS-----KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDK-LAFEGDHISMASL  244 (413)
T ss_pred             ccCCCCHHHHHHhcCc-----CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCc-cccCCcccChhhC
Confidence            4456788999988865     367887776666  9999875433    35889999999998754 21   1112211 


Q ss_pred             ---CCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          303 ---HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       303 ---l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                         .+..+++.|+=|. ||.|. .+|.++..+++.+
T Consensus       245 ~~~~~~vi~i~SfSK~-~~~~G~RiG~~v~~~~l~~  279 (413)
T PLN00175        245 PGMYERTVTMNSLGKT-FSLTGWKIGWAIAPPHLTW  279 (413)
T ss_pred             CCCcCcEEEEecchhh-ccCcchheeeeEeCHHHHH
Confidence               2345888999999 88672 3899988765544

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.02  E-value=3.8e-09  Score=102.70  Aligned_cols=163  Identities=13%  Similarity=0.120  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      -..+.|+.|++++|++++  +|++|+|+++++++++..+   +|+.++ ..-.+.  .+...++..|++++.++.+. +.
T Consensus        56 g~~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~---~gd~V~v~~P~y~--~~~~~~~~~g~~~~~v~~~~-~~  127 (337)
T PRK03967         56 TSDPLREAIAEFYGLDAE--NIAVGNGSDELISYLVKLF---EGKHIVITPPTFG--MYSFYAKLNGIPVIDVPLKE-DF  127 (337)
T ss_pred             CHHHHHHHHHHHhCcCcc--eEEEcCCHHHHHHHHHHHh---CCCeEEEeCCChH--HHHHHHHHcCCeEEEeecCC-CC
Confidence            356799999999999876  7999999999999998876   588765 333332  23445566799999998864 35


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCc-CCccCCC-CCCCCcEEEEc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVV-GEDRLNL-ALHRPDFVLCN  311 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~-G~~~LDL-s~l~~DFvv~S  311 (344)
                      .++.+.+++.+.      +++++.++.-+|  |..+|.+.+.++-++++++++|.+..-. +...+.+ ....--+++.|
T Consensus       128 ~~d~~~l~~~~~------~~~~v~~~~P~NPtG~~~~~~~l~~i~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S  201 (337)
T PRK03967        128 TIDGERIAEKAK------NASAVFICSPNNPTGNLQPEEEILKVLETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRT  201 (337)
T ss_pred             CcCHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEEECchhhhcccchHHHHhhCCCEEEEec
Confidence            678888876542      355666765556  9999998776654579999999987621 2111111 11112367799


Q ss_pred             cccCCCCCCC-ceEEEEEeCCCcc
Q 035915          312 LDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       312 ~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +=|. ||.|. .+|++++.++..+
T Consensus       202 ~SK~-~~l~GlRiG~iv~~~~~i~  224 (337)
T PRK03967        202 FSKA-FGLAGIRAGYAIANEEIID  224 (337)
T ss_pred             chHh-hcchhhhheeeecCHHHHH
Confidence            9999 88662 4899998765543

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.01  E-value=8.1e-09  Score=106.43  Aligned_cols=160  Identities=12%  Similarity=0.097  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      +.+.|+.||+++      +++++  +|++|+|+++++++++.++ +.+||+|+ ..-.+..  +...++..|++++.++.
T Consensus       187 ~~~lReaia~~~~~~~~~~~~~~--~I~it~G~~eal~~~~~~l-~~~Gd~Vli~~P~y~~--y~~~~~~~g~~~v~~~~  261 (517)
T PRK13355        187 LFSARKAIMQYAQLKGLPNVDVD--DIYTGNGVSELINLSMSAL-LDDGDEVLIPSPDYPL--WTACVNLAGGTAVHYRC  261 (517)
T ss_pred             hHHHHHHHHHHHHhcCCCCCChh--HEEEeCcHHHHHHHHHHHh-CCCCCEEEEcCCCCcC--HHHHHHHCCCEEEEeec
Confidence            567899999998      67776  7999999999999999887 57899865 4444442  23344556899888887


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.. +..++.++|++.+++     +++++.+..-+|  |.+++.+.   | ..|+++++++++|-+-.-.   |.....+
T Consensus       262 ~~~~~~~~d~~~l~~~~~~-----~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~  336 (517)
T PRK13355        262 DEQSEWYPDIDDIRSKITS-----RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSI  336 (517)
T ss_pred             CcccCCCCCHHHHHHhcCc-----CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccH
Confidence            542 235788999888765     366666665556  99999543   3 3458899999999985420   2211222


Q ss_pred             CCCCCcE--E-EEccccCCCCCCCc--eEEEEEe
Q 035915          301 ALHRPDF--V-LCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       301 s~l~~DF--v-v~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      ..+..|.  + +.|+-|. |+.| |  +|.+++.
T Consensus       337 ~~~~~~~~vi~~~S~SK~-~~~~-G~RiG~~i~~  368 (517)
T PRK13355        337 ASLAPDLFCVTFSGLSKS-HMIA-GYRIGWMILS  368 (517)
T ss_pred             HHhCCCCeEEEEecchhh-ccCc-ccceEEEEee
Confidence            2233453  2 3678998 8755 6  8998864

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.00  E-value=2.1e-08  Score=102.61  Aligned_cols=178  Identities=13%  Similarity=0.061  Sum_probs=110.2

Q ss_pred             HHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHH
Q 035915          139 LLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFA  218 (344)
Q Consensus       139 L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la  218 (344)
                      |..++.|.-.|.|+..-..   -.+.+++++|.+    .+++|+++|.|++++ ..+..++||++ +...|- ...+.-.
T Consensus        64 ~a~~~vGDd~Yagd~s~~~---LE~~vAe~lG~e----~aV~v~sGTaAl~ll-~~l~v~pGd~V-p~n~~f-~Tt~ahI  133 (460)
T PRK13237         64 WAGMMIGDEAYAGSRNFYH---LEETVQEYYGFK----HVVPTHQGRGAENLL-SRIAIKPGQYV-PGNMYF-TTTRYHQ  133 (460)
T ss_pred             HHHHhhcchhhcCCCcHHH---HHHHHHHHHCCC----eEEEeCCHHHHHHHH-HHhCCCCcCEE-CCccch-HhhHHHH
Confidence            4444556654555443333   455689999984    399999999999986 44557889975 222222 1122212


Q ss_pred             HcCCcEEEEEeC---------CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccH---HHHHH-HHhCCc
Q 035915          219 SFKESKVILAPE---------AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSM---HWISE-AHRNSW  282 (344)
Q Consensus       219 ~~~G~kV~~vp~---------~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl---~~Ia~-ar~~g~  282 (344)
                      ...|+.+.-++.         +..++.+|.++|++.++++. ..++.|+++...+|   |...|+   +.|.+ |+++|+
T Consensus       134 ~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~-~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl  212 (460)
T PRK13237        134 ELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG-AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGI  212 (460)
T ss_pred             HhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhcccc-CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCC
Confidence            335664443321         12357899999999997532 12455555544444   677654   55544 589999


Q ss_pred             EEEecccccCcCCc-----------cCCCC------CCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          283 HVLLDATALVVGED-----------RLNLA------LHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       283 ~vlvDAaQa~~G~~-----------~LDLs------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      .+|.||||++ |..           .-++.      -...|.+++|+||- ++.|. =|++..++
T Consensus       213 ~Vi~DaAra~-gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~-~~~~~-GG~i~t~D  274 (460)
T PRK13237        213 KVFFDATRCV-ENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKD-CLVNI-GGFLAMND  274 (460)
T ss_pred             EEEEECcchh-cChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCC-CCCCC-ceEEEECC
Confidence            9999999999 822           11211      12489999999998 66563 24555554

>PRK06207 aspartate aminotransferase; Provisional

Probab=98.98  E-value=1.9e-08  Score=100.47  Aligned_cols=165  Identities=17%  Similarity=0.166  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHcCC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC---
Q 035915          159 IQARNKVLKHCGL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW---  232 (344)
Q Consensus       159 e~AR~~IA~~Lga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~---  232 (344)
                      +...+.+++++|.  +++ .+|++|+|+++++.+++..+ +.+||.|+ ..-.+..  ...+++..|++++.+|.+.   
T Consensus        85 ~aia~~l~~~~g~~~~~~-~~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~--~~~~~~~~g~~v~~v~~~~~~~  160 (405)
T PRK06207         85 ELLAARLAAFTGAPVDAA-DELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDYLSA  160 (405)
T ss_pred             HHHHHHHHHHhCCCCCCC-CCEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--HHHHHHHcCCEEEEEeccccCc
Confidence            4444455555685  441 27999999999999999887 57899865 3333332  3445566799998888752   


Q ss_pred             -CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCCCC
Q 035915          233 -LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNLAL  302 (344)
Q Consensus       233 -~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDLs~  302 (344)
                       .+..++.++|++++++     ++++|.+..-+|  |.+++.+.+.    .++++++++++|-+-.-.   |.....+..
T Consensus       161 ~~~~~~d~~~l~~~~~~-----~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~  235 (405)
T PRK06207        161 DKRAGLDLDQLEEAFKA-----GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRA  235 (405)
T ss_pred             ccCCCcCHHHHHHhhhh-----cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhc
Confidence             1245788999988865     356666665556  9999975443    357899999999986631   211112222


Q ss_pred             CCCc----EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 HRPD----FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~D----Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +..|    +++.|+-|. |+.| |  +|.++..+++.+
T Consensus       236 ~~~~~~~vi~i~SfSK~-~~lp-GlRiG~ii~~~~l~~  271 (405)
T PRK06207        236 LPIDPENVITIMGPSKT-ESLS-GYRLGVAFGSPAIID  271 (405)
T ss_pred             CCCCcCcEEEEecchhh-ccCc-ccceEEEEcCHHHHH
Confidence            2222    889999999 8867 7  999887765543

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=98.97  E-value=3.6e-09  Score=103.39  Aligned_cols=162  Identities=10%  Similarity=0.023  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      .+.|+.+++++|++++  +|++|+|+++++.+++..+ ..+| +.++. .-.+.  .....++..|++++.+|.+. +..
T Consensus        60 ~~l~~~~a~~~g~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~--~y~~~~~~~G~~~~~v~~~~-~~~  133 (351)
T PRK01688         60 KAVIENYAAYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYG--MYSVSAETIGVEIRTVPTLD-NWQ  133 (351)
T ss_pred             HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHH--HHHHHHHHcCCEEEEeecCC-CCC
Confidence            5688889999999887  7999999999999999987 4566 76543 33322  23455667899999998864 456


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-H--hCCcEEEecccccCc-CC-ccCCC-CCCCCcEE
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-H--RNSWHVLLDATALVV-GE-DRLNL-ALHRPDFV  308 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r--~~g~~vlvDAaQa~~-G~-~~LDL-s~l~~DFv  308 (344)
                      ++.+++.+.+.      +++++.+..-+|  |+.++.+++.++ +  +.++++++|-+..-. +. ..+++ ...+-=++
T Consensus       134 ~d~~~l~~~~~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv  207 (351)
T PRK01688        134 LDLPAIADNLD------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVI  207 (351)
T ss_pred             CCHHHHHHhcc------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEE
Confidence            78888887762      367777776666  999999776543 2  236789999986531 10 01111 11222378


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +-|+.|+ ||-| |  +|.++.+++..+
T Consensus       208 ~rSfSK~-~gla-GlRiGy~i~~~~~i~  233 (351)
T PRK01688        208 LRTLSKA-FALA-GLRCGFTLANEEVIN  233 (351)
T ss_pred             EecchHh-hcCH-HHHHhHHhCCHHHHH
Confidence            8899999 8844 7  599988776543

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.95  E-value=6.1e-09  Score=104.94  Aligned_cols=164  Identities=15%  Similarity=0.034  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEe-CCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HH-HHHHH----HHcCCcEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFT-PNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LD-YVREF----ASFKESKV  225 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFT-snaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~-~ir~l----a~~~G~kV  225 (344)
                      +..+-|+++++++||++|++|-+-+= -+++.|+..|..++ .++||.|++ ...|.   +. .....    +.....++
T Consensus        66 ~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aL-l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~  144 (399)
T PF00464_consen   66 EIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMAL-LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFES  144 (399)
T ss_dssp             HHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHH-T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEE
T ss_pred             HHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHH-HhhcCcEEecChhhcccccccccccccccccccceEEE
Confidence            34467999999999999876555444 48888988888888 479999874 33321   11 11010    01123566


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCcc-----CC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDR-----LN  299 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~-----LD  299 (344)
                      ...+++...+.||.+++++.+...    +++|+.+...+.-..+|++++++ +++.|+++++|++|.+ |.+-     =.
T Consensus       145 ~~y~~d~~~~~ID~d~l~~~a~~~----kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~-GLIa~g~~~~P  219 (399)
T PF00464_consen  145 VPYPVDPDTGLIDYDELEKLAKEH----KPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIA-GLIAGGLFPNP  219 (399)
T ss_dssp             EEEEB-TTTSSB-HHHHHHHHHHH------SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTH-HHHHTTSS--G
T ss_pred             EeeeeecCCCeECHHHHHHHHhhc----CCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccc-cceehheecCc
Confidence            667777667899999999988753    46899888655588889988876 5889999999999987 6542     22


Q ss_pred             CCCCCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      |.  .+|++++|-||. |.||+| |+++.+
T Consensus       220 ~~--~ADvvt~sThKt-l~GPrg-giI~~~  245 (399)
T PF00464_consen  220 FP--YADVVTGSTHKT-LRGPRG-GIILTN  245 (399)
T ss_dssp             CC--TSSEEEEESSGG-G-SSS--EEEEES
T ss_pred             cc--cceEEEeecccc-ccccCc-eEEEEc
Confidence            32  389999999999 777976 777777

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02656 tyrosine transaminase

Probab=98.93  E-value=3.4e-08  Score=98.59  Aligned_cols=161  Identities=15%  Similarity=0.082  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.++++++      ++++  +|++|+|+|+|+.+++..+ ..+||.|+ ....|..  ....++..|++++.+|.
T Consensus        75 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~i~~  149 (409)
T PLN02656         75 LPQARRAIAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSML-ARPGANILLPRPGFPI--YELCAAFRHLEVRYVDL  149 (409)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcc--cEEEeCChHHHHHHHHHHH-hCCCCeEEEeCCCCCc--HHHHHHHcCCEEEEEeC
Confidence            3457888888874      4554  7999999999999999887 57899854 4555542  22334446999999987


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.. +..++.++|++.+++     +++++.+..-+|  |.+++.+.+    ..|+++++++++|.+..-.   +.....+
T Consensus       150 ~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  224 (409)
T PLN02656        150 LPEKGWEVDLDAVEALADQ-----NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPM  224 (409)
T ss_pred             CCcCCCCCCHHHHHHHhcc-----CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccH
Confidence            532 335788889887764     356677766566  999876433    3358899999999987620   1111222


Q ss_pred             C---CCCCcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          301 A---LHRPDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       301 s---~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      .   ....=+++.|+=|. |+.|. .+|+++..
T Consensus       225 ~~~~~~~~vi~~~SfSK~-f~~pGlRiG~~i~~  256 (409)
T PLN02656        225 GVFGSIVPVLTLGSLSKR-WIVPGWRLGWFVTT  256 (409)
T ss_pred             HHhcccCcEEEEcccchh-ccCcceeEEEEEEe
Confidence            1   11234778999998 88773 48999874

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.93  E-value=8.9e-08  Score=95.85  Aligned_cols=180  Identities=12%  Similarity=0.022  Sum_probs=121.9

Q ss_pred             cccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCc
Q 035915          131 RTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGE  209 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH  209 (344)
                      ...++.+.+.+-|-..--..|.+.+    +--+.+++++|+.    ..+-|+|+|.||.+.+.++...+||++ ++++..
T Consensus        13 i~~~e~~~v~~vl~sg~i~~G~~v~----~FE~~~ae~~G~k----~ava~~sgT~AL~laL~al~ig~GDeVI~ps~Tf   84 (374)
T COG0399          13 IGEEELAAVQEVLKSGWLTGGPFVR----RFEQAFAEYLGVK----YAVAVSSGTAALHLALLALAIGPGDEVIVPSFTF   84 (374)
T ss_pred             cchHHHHHHHHHHHcCCeecChHHH----HHHHHHHHHhCCC----eEEEecChHHHHHHHHHhcCCCCCCEEEecCCch
Confidence            4556666676665544212255443    2334789999995    389999999999999997778899995 455542


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHH-HHHhCCcEEEecc
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWIS-EAHRNSWHVLLDA  288 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia-~ar~~g~~vlvDA  288 (344)
                      - ..... ....|++.+.+++|.....+|.+.|+++++++     |+-|...|. -|..-+++.|. .++++|+.|+-||
T Consensus        85 v-ATan~-i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~-----tKAIipVhl-~G~~~dm~~i~~la~~~~l~vIEDa  156 (374)
T COG0399          85 V-ATANA-VLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR-----TKAIIPVHL-AGQPCDMDAIMALAKRHGLPVIEDA  156 (374)
T ss_pred             H-HHHHH-HHHcCCeEEEEecCCcccCCCHHHHHHHcccC-----CeEEEEehh-ccCCCCHHHHHHHHHHcCCeEEEEc
Confidence            2 11111 12369999999999877899999999999874     444433322 38888998775 4699999999999


Q ss_pred             cccCcCCccCCCC-CCCCcEEEEccc--cCCCCCCCceEEEEEeC
Q 035915          289 TALVVGEDRLNLA-LHRPDFVLCNLD--NTQNAQPSKITCLLIRK  330 (344)
Q Consensus       289 aQa~~G~~~LDLs-~l~~DFvv~S~H--K~l~G~P~GiG~L~Vr~  330 (344)
                      +|+. |..-=+=. -.--|+-+||+|  |. +  .+|=|..++-+
T Consensus       157 Aqa~-Ga~y~gk~vGt~Gd~~~fSF~~~K~-i--ttgEGGav~tn  197 (374)
T COG0399         157 AQAH-GATYKGKKVGSFGDIGAFSFHATKN-L--TTGEGGAVVTN  197 (374)
T ss_pred             chhc-cCeecCcccccccceEEEEecCCCC-c--cccCceEEEeC
Confidence            9999 86532211 112466666665  65 4  45655555533

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=98.92  E-value=4e-08  Score=97.37  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHcC-----CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          158 EIQARNKVLKHCG-----LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       158 le~AR~~IA~~Lg-----a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..+.|+.|+++++     ++++  +|++|+|+|+|+.+++..+ ..+|+.++ ..-.+.  .....++..|+++..++.+
T Consensus        75 ~~~lr~aia~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~v~i~~P~y~--~~~~~~~~~g~~v~~~~~~  149 (401)
T TIGR01264        75 ALSAREAIASYYHNPDGPIEAD--DVVLCSGCSHAIEMCIAAL-ANAGQNILVPRPGFP--LYETLAESMGIEVKLYNLL  149 (401)
T ss_pred             CHHHHHHHHHHHhhcCCCCCHH--HEEECcChHHHHHHHHHHh-CCCCCEEEEeCCCCh--hHHHHHHHcCCEEEEeecC
Confidence            3567888999987     6655  6999999999999999887 46788854 333222  2344556679999888875


Q ss_pred             CC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCCC
Q 035915          232 WL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       232 ~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      .. +..++.++|++.+++     +++++.++.-+|  |..++.+.+.    .++++|+++++|-+-.-.   +.....+.
T Consensus       150 ~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  224 (401)
T TIGR01264       150 PDKSWEIDLKQLESLIDE-----KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA  224 (401)
T ss_pred             CccCCCCCHHHHHHHhcc-----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH
Confidence            32 346888889887754     357777766566  9999864433    357899999999986520   11112222


Q ss_pred             CCCC---cEEEEccccCCCCCCC-ceEEEEEeC
Q 035915          302 LHRP---DFVLCNLDNTQNAQPS-KITCLLIRK  330 (344)
Q Consensus       302 ~l~~---DFvv~S~HK~l~G~P~-GiG~L~Vr~  330 (344)
                      .+..   -+++.|+=|. |+.|. .+|.+++.+
T Consensus       225 ~~~~~~~vi~~~SfSK~-~~~~GlRiG~iv~~~  256 (401)
T TIGR01264       225 SLSSTVPILSCGGLAKR-WLVPGWRLGWIIIHD  256 (401)
T ss_pred             HcCCCCcEEEEccCccc-CCCccceEEEEEecC
Confidence            2222   2788999998 78773 389888763

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=98.92  E-value=3e-08  Score=97.77  Aligned_cols=158  Identities=16%  Similarity=0.089  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC-HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE-LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~-~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ...++.++.+|+++|++++  ++++|+|+++|+..++.++. .+||+++.. .+.+ ...+...++..|+++...  .  
T Consensus        54 ~~~~~Le~~lA~~~g~~~e--~ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--~--  126 (346)
T TIGR03576        54 IFEEKVQELGREHLGGPEE--KILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--D--  126 (346)
T ss_pred             HHHHHHHHHHHHHcCCCcc--eEEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchhHHHHHHHcCCEEecc--C--
Confidence            4668899999999999776  69999999999999998884 689987642 2222 112333345557765322  1  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccc---ccHHHHHH-HHhCCcEEEecccccCcCCccC----CCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTR---YSMHWISE-AHRNSWHVLLDATALVVGEDRL----NLALHR  304 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i---~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L----DLs~l~  304 (344)
                          +.++++. .      .++++|.++..|. |.+   .|++.|.+ ++++|+++++|-||+. |....    .+...+
T Consensus       127 ----~l~~l~~-~------~~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~-~~~~~~~~~~~~~~~  194 (346)
T TIGR03576       127 ----ELSELKK-I------DGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGA-RVRRLYGQPPALDLG  194 (346)
T ss_pred             ----CHHHHhh-C------cCceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccc-cccccCCCCCHHHcC
Confidence                2233322 1      1367777776553 888   46665544 6889999999999997 64221    122346


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+++.|++|+ ++|+. +|+++.++++.+
T Consensus       195 ~divv~s~SKa-laG~r-~G~v~~~~~li~  222 (346)
T TIGR03576       195 ADLVVTSTDKL-MDGPR-GGLLAGRKELVD  222 (346)
T ss_pred             CcEEEeccchh-ccccc-eEEEEeCHHHHH
Confidence            79999999998 75575 688888876554

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02822 serine palmitoyltransferase

Probab=98.92  E-value=4.8e-08  Score=100.39  Aligned_cols=165  Identities=14%  Similarity=0.185  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      .....+.++++|+++|.. +  .|+|++|++ ++..++.++ .++||.++..-..|.. +..-..-.|.++++++.+.  
T Consensus       153 ~~~~~~Lee~La~~~~~~-~--~i~~s~G~~-a~~sai~a~-~~~gd~Ii~d~~~H~s-~~~~~~ls~~~~~~~~~nd--  224 (481)
T PLN02822        153 IDVHLDCETKIAKFLGTP-D--SILYSYGLS-TIFSVIPAF-CKKGDIIVADEGVHWG-IQNGLYLSRSTIVYFKHND--  224 (481)
T ss_pred             HHHHHHHHHHHHHHhCCC-C--EEEECCHHH-HHHHHHHHh-CCCCCEEEEeCCccHH-HHHHHHHcCCeEEEECCCC--
Confidence            345689999999999964 3  699998887 456677776 4678887755444422 2222233467888887652  


Q ss_pred             CccCHHHHHHHhhh---cC-CCCCe-eEEEEeCcc-c-cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------
Q 035915          235 LRIKGSQLSQYFRR---KC-KHTPK-GLFSYPADI-N-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------  297 (344)
Q Consensus       235 g~i~~~~L~~~l~~---~~-~~~~t-~LVa~~avS-N-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------  297 (344)
                          .++++..+..   .. ...++ ++|.+.... | |.+.|+++|.+ ++++|+++++|-+|+. |...         
T Consensus       225 ----~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~-gvlG~~G~G~~e~  299 (481)
T PLN02822        225 ----MESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSF-GVLGKSGRGLSEH  299 (481)
T ss_pred             ----HHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCChHHH
Confidence                2334433321   10 00123 566665554 4 99999987765 6899999999999996 6421         


Q ss_pred             CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          298 LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       298 LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++....+|+++.|+.|. || ..| |+++.+++..+.
T Consensus       300 ~~v~~~~~dii~~s~sKa-lg-~~G-G~i~g~~~ii~~  334 (481)
T PLN02822        300 FGVPIEKIDIITAAMGHA-LA-TEG-GFCTGSARVVDH  334 (481)
T ss_pred             cCCCCCCCeEEEecchhh-hh-hCC-eEEEcCHHHHHH
Confidence            233333689999999999 88 557 888877765543

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=98.91  E-value=5.6e-08  Score=97.02  Aligned_cols=160  Identities=13%  Similarity=0.108  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHcC------------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcE
Q 035915          158 EIQARNKVLKHCG------------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lg------------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~k  224 (344)
                      ..+.|+.||++++            ++++  +|++|+|+++|+.+++..+ ..+||.++ ..-.|..  +...++..|++
T Consensus        77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~--~~~~~~~~g~~  151 (412)
T PTZ00433         77 SPEAREAVATYWRNSFVHKESLKSTIKKD--NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPH--YETVCKAYGIE  151 (412)
T ss_pred             cHHHHHHHHHHHHhhccccccccCCCChh--hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCccc--HHHHHHHcCCE
Confidence            4557888888876            4554  7999999999999999987 46899864 3333332  33445667999


Q ss_pred             EEEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEecccccCc---C
Q 035915          225 VILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATALVV---G  294 (344)
Q Consensus       225 V~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa~~---G  294 (344)
                      +..+|.+.. +..++.++|++.+++     +++++.++.-+|  |..++.+.+    ..|+++|+++++|-+..-.   +
T Consensus       152 ~~~i~~~~~~~~~~d~~~l~~~~~~-----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  226 (412)
T PTZ00433        152 MRFYNCRPEKDWEADLDEIRRLVDD-----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG  226 (412)
T ss_pred             EEEEecCccccCcCCHHHHHHHhcc-----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence            999987532 346788889887764     367777776666  999987544    2357899999999987520   1


Q ss_pred             CccCCCCCC---CCcEEEEccccCCCCCCC-ceEEEEE
Q 035915          295 EDRLNLALH---RPDFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       295 ~~~LDLs~l---~~DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      .....+..+   ..-+++.|+=|. ||.|. .+|.+++
T Consensus       227 ~~~~~~~~~~~~~~~i~~~SfSK~-~~~pGlRlG~~i~  263 (412)
T PTZ00433        227 ATFTSVADFDTTVPRVILGGTAKN-LVVPGWRLGWLLL  263 (412)
T ss_pred             CCccchhhccCCCceEEEccchhh-cCCCCeeEEEEEE
Confidence            110111111   123678899999 87673 5888886

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.89  E-value=2.5e-08  Score=96.42  Aligned_cols=171  Identities=14%  Similarity=0.073  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      -....|+.+|++++      .+++ ..|++|+|+.+++.++...+...+|+.++ ..-.|..  +...++..|++++.+|
T Consensus        45 g~~~lr~~ia~~~~~~~~~~~~~~-~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~--~~~~~~~~g~~~~~~~  121 (363)
T PF00155_consen   45 GYPELREAIADFLGRRYGVPVDPE-ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPS--YIEAARLLGAEVIPVP  121 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHTTGG-EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTH--HHHHHHHTTSEEEEEE
T ss_pred             hhHHHHHHHHHHhhhccCcccccc-eEEEEecccccchhhhhhcccccccccceecCCcccc--ccccccccCceeeecc
Confidence            35678999999999      5543 26999999999998887776345688754 3333442  3455666799998888


Q ss_pred             CC-CCCCccCHHHHHHHhhhcCCCC-CeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCcc----
Q 035915          230 EA-WLDLRIKGSQLSQYFRRKCKHT-PKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDR----  297 (344)
Q Consensus       230 ~~-~~~g~i~~~~L~~~l~~~~~~~-~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~----  297 (344)
                      .+ ..+..++.++|++.+++..... +++++.++..+|  |..+|.+.+.+    ++++++++++|-++.. ....    
T Consensus       122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~  200 (363)
T PF00155_consen  122 LDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSD-LIFGDPDF  200 (363)
T ss_dssp             EEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTT-GBSSSSHT
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceec-cccCCCcc
Confidence            53 1245789999999887521111 356777776666  99999965543    4789999999999987 3322    


Q ss_pred             ----CCCCCCCC-cEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          298 ----LNLALHRP-DFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       298 ----LDLs~l~~-DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                          ..+. ... .+++.|+-|. ||.| |  +|++++.++..+
T Consensus       201 ~~~~~~~~-~~~~vi~~~S~SK~-~g~~-GlRvG~i~~~~~~~~  241 (363)
T PF00155_consen  201 GPIRSLLD-EDDNVIVVGSLSKS-FGLP-GLRVGYIVAPPELIE  241 (363)
T ss_dssp             HHHHGHHT-TTSTEEEEEESTTT-TTSG-GGTEEEEEEEHHHHH
T ss_pred             Cccccccc-ccccceeeeecccc-cccc-ccccccccchhhhhh
Confidence                1122 233 4999999999 8867 5  899998665443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.89  E-value=4.6e-08  Score=103.37  Aligned_cols=195  Identities=13%  Similarity=0.090  Sum_probs=122.7

Q ss_pred             cccchHHHHHHhhccC--CCC-hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHH---HHhh---CCC--CC
Q 035915          131 RTQLEPSRLLDILTKK--SSF-PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMML---VGES---YPF--FR  199 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gn--ss~-~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnl---va~s---l~~--~~  199 (344)
                      ......-.+..++++.  ..+ .+...+....++=+.+++++|.++.  .=+||+|+|+|+-.   +++.   +|+  +.
T Consensus        95 ~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~--~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~  172 (608)
T TIGR03811        95 LMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG--WGHIVADGSLANLEGLWYARNIKSLPFAMKE  172 (608)
T ss_pred             CHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC--CeEEeCChHHHHHHHHHHHHHhhhccchhhh
Confidence            4455555566655543  222 3334455668899999999998753  34699999998653   3332   121  00


Q ss_pred             -------------------------------------------CC------eEEEcCC-cCHHHHHHHHHcCCc---EEE
Q 035915          200 -------------------------------------------GN------FYMTIIG-EELDYVREFASFKES---KVI  226 (344)
Q Consensus       200 -------------------------------------------Gd------~ivS~~e-H~~~~ir~la~~~G~---kV~  226 (344)
                                                                 |.      .++++-. |.  +|...|.-.|+   .|+
T Consensus       173 ~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHy--S~~KAa~ilGlG~~~vv  250 (608)
T TIGR03811       173 VKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHY--SWLKAADIIGIGLDQVI  250 (608)
T ss_pred             ccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccH--HHHHHHHHcCCCcccEE
Confidence                                                       00      2333323 33  24444555576   588


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCC-CCe-eEEEEeCccc-cccccHHHHHHH----HhCCc--EEEecccccCcCC--
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKH-TPK-GLFSYPADIN-GTRYSMHWISEA----HRNSW--HVLLDATALVVGE--  295 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~-~~t-~LVa~~avSN-G~i~Pl~~Ia~a----r~~g~--~vlvDAaQa~~G~--  295 (344)
                      .+|++. +++++.+.|++.+++.... .++ .+|+.....+ |.+=||+.|..+    +++|+  ++|||||-.- -.  
T Consensus       251 ~VpvD~-~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG-~~~~  328 (608)
T TIGR03811       251 PVPVDS-NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGG-YGRA  328 (608)
T ss_pred             EeecCC-CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccc-hhhh
Confidence            899986 5899999999988642111 122 2333333333 999999888654    45776  6999998763 21  


Q ss_pred             ccCC---------------------------CC---------CCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          296 DRLN---------------------------LA---------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       296 ~~LD---------------------------Ls---------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      .-++                           ++         -..+|-+++.+||| ++.|.++|+|++|+..
T Consensus       329 l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~-g~~Py~~G~ll~Rd~~  400 (608)
T TIGR03811       329 IFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKM-GYIPYSAGGIVIQDIR  400 (608)
T ss_pred             hhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccc-cccCCCeEEEEEeCHH
Confidence            0011                           11         13699999999999 6679999999999764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.89  E-value=1.9e-08  Score=98.43  Aligned_cols=165  Identities=13%  Similarity=0.076  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ....|+.||+++      +++++  +|++|+|+++++.+++..+ ..+|+.++. .-.++  .....++..|++++.+|.
T Consensus        67 ~~~lr~aia~~~~~~~~~~~~~~--~I~it~G~~~~l~~~~~~~-~~~gd~v~v~~P~y~--~~~~~~~~~g~~~~~~~~  141 (368)
T PRK03317         67 AVALRADLAAYLTAQTGVGLTVE--NVWAANGSNEILQQLLQAF-GGPGRTALGFVPSYS--MHPIIARGTHTEWVEGPR  141 (368)
T ss_pred             hHHHHHHHHHHhhhhccCCCChh--hEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChH--HHHHHHHhcCCeeEEccc
Confidence            466888899988      56665  7999999999999999987 367888653 22222  233445556888887776


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR----LNLALH  303 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l  303 (344)
                      +. +..++.+++++.+...    +++++.++..+|  |..+|.+++.+ ++..++++++|-++.-.+...    +.+...
T Consensus       142 ~~-~~~~d~~~l~~~~~~~----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~  216 (368)
T PRK03317        142 AA-DFTLDVDAAVAAIAEH----RPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPE  216 (368)
T ss_pred             CC-CCCCCHHHHHHHHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHh
Confidence            43 3457889998888632    355666654455  99999987765 466689999999987412111    111111


Q ss_pred             CCc-EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          304 RPD-FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       304 ~~D-Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .++ +++.|+-|. ||.| |  +|+++.++++.+
T Consensus       217 ~~~~i~~~SfSK~-~g~~-GlRiG~~~~~~~~~~  248 (368)
T PRK03317        217 YPRLVVSRTMSKA-FAFA-GGRLGYLAAAPAVVD  248 (368)
T ss_pred             CCCEEEEEechhh-hccc-hhhhhhhhCCHHHHH
Confidence            234 566699999 8766 5  688887765543

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=98.86  E-value=1.2e-07  Score=94.74  Aligned_cols=163  Identities=11%  Similarity=0.109  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.++++|+++|++ +  .++|++|.++.+..+. ++ +++||+|+.. ..|... +.. +.-.++++.+++.+..  
T Consensus        44 ~~~~LE~~lA~~~g~e-~--al~~~sG~~a~~~~i~-~l-~~~GD~Vl~~~~~h~s~-~~~-~~l~~~~~~~~~~~d~--  114 (392)
T PLN03227         44 AHLELEQCMAEFLGTE-S--AILYSDGASTTSSTVA-AF-AKRGDLLVVDRGVNEAL-LVG-VSLSRANVRWFRHNDM--  114 (392)
T ss_pred             HHHHHHHHHHHHhCCC-c--EEEecCcHHHHHHHHH-Hh-CCCCCEEEEeccccHHH-HHH-HHHcCCeEEEeCCCCH--
Confidence            5789999999999985 3  6999999988885443 34 6799997644 444422 222 1223567776665321  


Q ss_pred             ccCHHHHHHHhhhcC------CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-c--------
Q 035915          236 RIKGSQLSQYFRRKC------KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-R--------  297 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~------~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~--------  297 (344)
                       -+.+.+.+.+.+..      ...++++|.+....|  |.+.|++.+.+ ++++|+++++|-+|++ |.. +        
T Consensus       115 -~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~-g~~g~~G~g~~~~  192 (392)
T PLN03227        115 -KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSF-GTLGKSGRGSLEH  192 (392)
T ss_pred             -HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccc-cccCCCCCcHHHH
Confidence             12233333333110      012467888876654  99999987765 6999999999999996 532 1        


Q ss_pred             CCCC-CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          298 LNLA-LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       298 LDLs-~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +++. ..++|.+++|+.|. +| |. .|++..+++..
T Consensus       193 ~g~~p~~~~Div~~slsk~-~g-~~-gg~v~~~~~~~  226 (392)
T PLN03227        193 AGLKPMVHAEIVTFSLENA-FG-SV-GGMTVGSEEVV  226 (392)
T ss_pred             cCCCCCCCceEEEeechhh-hh-cc-CcEEecCHHHH
Confidence            1121 23669999999998 77 63 35555665543

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.85  E-value=1.2e-07  Score=95.88  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      -+.+.|+.|+++++.      +++  +|++|+|+|+|+.+++..+ ..+||+|+ ..-.+..  ....+...|++++.++
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~--~v~it~G~~~al~l~~~~l-~~~Gd~Vlv~~P~y~~--y~~~~~~~g~~~~~~~  169 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTD--DIYLTAGCAQAIEIIMSVL-AQPGANILLPRPGYPL--YEARAVFSGLEVRHFD  169 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChh--hEEEeCCHHHHHHHHHHHh-cCCCCEEEEcCCCCcc--HHHHHHHcCCEEEEee
Confidence            356688889988853      444  7999999999999999988 47899865 4434332  2233445688988877


Q ss_pred             CCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCc--C-CccCC
Q 035915          230 EAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVV--G-EDRLN  299 (344)
Q Consensus       230 ~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~--G-~~~LD  299 (344)
                      ... .+..++.++|++++++     +++++.+..-+|  |.++|.+.   |. .++++|+++++|.+-.-.  + ...+.
T Consensus       170 ~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~  244 (430)
T PLN00145        170 LLPERGWEVDLEGVEALADE-----NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVP  244 (430)
T ss_pred             CCcccCCcCCHHHHHHHhCc-----CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccc
Confidence            532 2346889999888765     356677666666  99999543   33 358899999999985520  1 11122


Q ss_pred             C---CCCCCcEEEEccccCCCCCCC-ceEEEEE
Q 035915          300 L---ALHRPDFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       300 L---s~l~~DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      +   .....=+++.|+=|. |+.|- .+|.+++
T Consensus       245 ~~~~~~~~~vi~~~S~SK~-~~~pG~RlG~iv~  276 (430)
T PLN00145        245 MGVFGEVAPVLTLGSISKR-WVVPGWRLGWIAT  276 (430)
T ss_pred             hhhhcccCcEEEEeccccc-cCCCCeeEEEEEE
Confidence            2   222234888999998 88773 4888887

>PRK06290 aspartate aminotransferase; Provisional

Probab=98.85  E-value=9.1e-08  Score=96.06  Aligned_cols=165  Identities=11%  Similarity=0.096  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHc----C---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHC----G---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~L----g---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.||+++    |   +++++ +|++|+|+++++.+++..+ ..+||.++ ..-.+..  ....++..|+++..+|
T Consensus        83 ~~~lr~aia~~~~~~~g~~~~~~~~-~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~--~~~~~~~~g~~v~~v~  158 (410)
T PRK06290         83 IQEFKEAAARYMEKVFGVKDIDPVT-EVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPV--TGTHTKYYGGEVYNLP  158 (410)
T ss_pred             cHHHHHHHHHHHHHHcCCCcCCCcc-eEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCcc--HHHHHHHcCCEEEEEe
Confidence            456777777775    4   44432 6999999999999999887 46899864 3333331  2344566799999999


Q ss_pred             CCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCC---ccCC
Q 035915          230 EAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGE---DRLN  299 (344)
Q Consensus       230 ~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~---~~LD  299 (344)
                      .+.. +..++.+++++.+..     +++++.+..-+|  |.++|.+.+.    .|+++++++++|-+..- -.   .+..
T Consensus       159 ~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~-~~~~~~~~s  232 (410)
T PRK06290        159 LLEENNFLPDLDSIPKDIKE-----KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAA-LTFDGKPLS  232 (410)
T ss_pred             cCCCcCCcCCHHHHHHhhcc-----cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhh-ceeCCCCcC
Confidence            8643 234578888777754     356666664456  9999985443    35789999999998774 21   1112


Q ss_pred             ---CCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 ---LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 ---Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                         +.. .+.++++.|+=|. ||.| |  +|+++..+++.+
T Consensus       233 ~~~~~~~~~~~I~i~SfSK~-~g~~-GlRiG~ii~~~~l~~  271 (410)
T PRK06290        233 FLSVPGAKEVGVEIHSLSKA-YNMT-GWRLAFVVGNELIVK  271 (410)
T ss_pred             hhcCCCccccEEEEeechhh-cCCc-hhheEeEEeCHHHHH
Confidence               211 2457999999999 8866 6  799988765544

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=98.84  E-value=7.4e-08  Score=94.78  Aligned_cols=167  Identities=15%  Similarity=0.103  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC-CC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYM-TIIGEELDYVREFASFKESKVILAPEAW-LD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~-~~  234 (344)
                      ..+.|+.||+++|++++  +|++|+|+++++++++..+ ..+| +.++ ..-.  .......++..|++++.+|.+. .+
T Consensus        61 ~~~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~-~~~g~~~vlv~~p~--y~~~~~~~~~~g~~~~~v~~~~~~~  135 (364)
T PRK04781         61 PPGLRSALAALYGCAPE--QLLIGRGSDEAIDLLVRAL-CVPGRDAVLVTPPV--FGMYAVCARLQNAPLVEVPLVDGAD  135 (364)
T ss_pred             HHHHHHHHHHHhCcChH--HEEEeCCHHHHHHHHHHHh-cCCCCCeEEEcCCC--hHHHHHHHHHcCCEEEEEecCCCcc
Confidence            46789999999999876  7999999999999999887 3567 5654 2222  2223444566799999998742 12


Q ss_pred             C-ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-H--hCCcEEEecccccCc-CC-ccCCC-CCCCC
Q 035915          235 L-RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-H--RNSWHVLLDATALVV-GE-DRLNL-ALHRP  305 (344)
Q Consensus       235 g-~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r--~~g~~vlvDAaQa~~-G~-~~LDL-s~l~~  305 (344)
                      + .++.+++.+.+..    .+++++.++..+|  |.++|.+.+.++ +  +.++++++|.+-.-. .. ..+.+ ...+-
T Consensus       136 ~~~~d~~~l~~~~~~----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~  211 (364)
T PRK04781        136 GFHADVPAIVAAALA----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDN  211 (364)
T ss_pred             CCCcCHHHHHHHHhc----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCC
Confidence            2 3566776544321    2467888876666  999999777543 3  247889999986420 11 11111 11122


Q ss_pred             cEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      =+++.|+=|. ||.|. .+|.++..++..+
T Consensus       212 vi~~~SfSK~-~gl~GlRvGy~v~~~~l~~  240 (364)
T PRK04781        212 LAVLRTLSKA-HALAAARIGSLIANAELIA  240 (364)
T ss_pred             EEEEecChhh-cccccceeeeeeCCHHHHH
Confidence            3788999999 88662 4899988765544

>PLN02187 rooty/superroot1

Probab=98.84  E-value=1.3e-07  Score=96.64  Aligned_cols=161  Identities=15%  Similarity=0.087  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ....|+.||++++      ++++  +|++|+|+++|+.+++.++ ..+||.|+ ..-.++.  ....++..|++++.++.
T Consensus       110 ~~~lR~aiA~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~--y~~~~~~~g~~~~~~~l  184 (462)
T PLN02187        110 ILPARRAVADYMNRDLPHKLTPE--DIFLTAGCNQGIEIVFESL-ARPNANILLPRPGFPH--YDARAAYSGLEVRKFDL  184 (462)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCcc--cEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCcc--HHHHHHHcCCEEEEEeC
Confidence            5668888999884      5665  7999999999999999988 57899864 4444442  23345667999998876


Q ss_pred             CC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      .. .+..++.++|++++++     +++++.+..-+|  |.+++.+.+.    .|+++|+++++|-+..-.   +.....+
T Consensus       185 ~~~~~~~~d~~~l~~~~~~-----~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~  259 (462)
T PLN02187        185 LPEKEWEIDLEGIEAIADE-----NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSM  259 (462)
T ss_pred             ccccCCccCHHHHHHhcCC-----CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeH
Confidence            32 2346788999887754     356666665556  9999964433    358899999999986520   1111122


Q ss_pred             CCCC---CcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          301 ALHR---PDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       301 s~l~---~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      ..+.   .=+++.|+=|. |+.|. .+|.+++.
T Consensus       260 ~~~~~~~~vi~l~SfSK~-f~~pGlRiG~~v~~  291 (462)
T PLN02187        260 GKFASIVPVLTLAGISKG-WVVPGWKIGWIALN  291 (462)
T ss_pred             HHhccCCcEEEEecchhh-cCCccceeEEEEec
Confidence            2221   23677899999 88773 48988873

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=98.84  E-value=9e-08  Score=98.79  Aligned_cols=169  Identities=12%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ..+.|+.||++++        ++|+  +|++|+|+++|+.+++.++ ..+||.|+. .-.++. ....+..+.|++++.+
T Consensus        96 ~~~LR~aiA~~l~~~~g~~v~v~pe--~Ivit~Ga~~al~~l~~~l-~~pGD~Vlv~~P~Y~~-~~~~~~~~~G~~vv~v  171 (496)
T PLN02376         96 LKKFRQAIAHFMGKARGGKVTFDPE--RVVMSGGATGANETIMFCL-ADPGDVFLIPSPYYAA-FDRDLRWRTGVEIIPV  171 (496)
T ss_pred             cHHHHHHHHHHHHHHhCCCCcCChh--hEEEccchHHHHHHHHHHh-CCCCCEEEECCCCccc-hHHHHHhhCCCEEEEE
Confidence            3568888888876        6666  7999999999999999988 468998653 222331 1122222469999999


Q ss_pred             eCCCC-CCccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCcc
Q 035915          229 PEAWL-DLRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDR  297 (344)
Q Consensus       229 p~~~~-~g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~  297 (344)
                      |.+.. +..++.+.+++.+... ....+++++.++.-+|  |+++|.+.+.    .|+++++++++|-+.+..   +...
T Consensus       172 ~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~  251 (496)
T PLN02376        172 PCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDF  251 (496)
T ss_pred             eCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCc
Confidence            98532 2457888887654321 0112467666665556  9999986654    347899999999987741   1111


Q ss_pred             CCCCC---------CCCc--EEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          298 LNLAL---------HRPD--FVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       298 LDLs~---------l~~D--Fvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                      ..+..         .++|  .++.|+-|. ||.|. .+|+++..++
T Consensus       252 ~si~~l~~~~~~~~~~~~~v~vv~S~SK~-~glpGlRvG~li~~~~  296 (496)
T PLN02376        252 VSVAEVVNDVDISEVNVDLIHIVYSLSKD-MGLPGFRVGIVYSFND  296 (496)
T ss_pred             ccHHHhhccccccccCCCeEEEEEecccc-CCCCcceEEEEEECCH
Confidence            22111         1234  346899999 88673 5999998543

>PRK06107 aspartate aminotransferase; Provisional

Probab=98.83  E-value=1.6e-07  Score=93.37  Aligned_cols=163  Identities=14%  Similarity=0.042  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHcCC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-HHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          159 IQARNKVLKHCGL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-LDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       159 e~AR~~IA~~Lga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      +...+.+.+.+|.  +++  +|++|+|+|+|+++++.++ +.+|+.++ ....+. ...+   ....+.++..++.+.. 
T Consensus        77 ~~ia~~l~~~~g~~~~~~--~i~~t~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~y~~~---~~~~~~~~~~v~~~~~~  150 (402)
T PRK06107         77 KAIIAKLERRNGLHYADN--EITVGGGAKQAIFLALMAT-LEAGDEVIIPAPYWVSYPDM---VLANDGTPVIVACPEEQ  150 (402)
T ss_pred             HHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCCCcCHHHH---HHHcCCEEEEecCCccc
Confidence            4555555666676  444  7999999999999998876 67899865 343332 1111   2234666666766422 


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhC-CcEEEecccccCc---CCccCCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRN-SWHVLLDATALVV---GEDRLNLALH  303 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~-g~~vlvDAaQa~~---G~~~LDLs~l  303 (344)
                      +..++.+.|++.+.+     +++++.++.-+|  |..+|.+.+.    .|+++ ++++++|-+-.-.   +.....+...
T Consensus       151 ~~~~~~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~  225 (402)
T PRK06107        151 GFKLTPEALEAAITP-----RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAA  225 (402)
T ss_pred             CCCCCHHHHHhhcCc-----CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHh
Confidence            235788888888764     356666665556  9999985443    35777 9999999765320   1111111111


Q ss_pred             -----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          304 -----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       304 -----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                           +--+++.|+.|. ||.| |  +|+++..+++.+
T Consensus       226 ~~~~~~~vi~~~S~SK~-~~~p-GlRiG~~~~~~~~~~  261 (402)
T PRK06107        226 APELRDRVLVTNGVSKT-YAMT-GWRIGYAAGPADLIA  261 (402)
T ss_pred             CcCccCCEEEEeccchh-hcCc-ccceeeeecCHHHHH
Confidence                 234777888999 8756 6  599988776554

>PRK06348 aspartate aminotransferase; Provisional

Probab=98.82  E-value=1.1e-07  Score=93.89  Aligned_cols=163  Identities=12%  Similarity=0.057  Sum_probs=107.7

Q ss_pred             HHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          160 QARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       160 ~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      +.|+.|++++      +++++  +|++|+|+++|+.+++.++ ..+|+.|+. .-.+.  .....++..|.+++.+|...
T Consensus        70 ~lr~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~--~~~~~~~~~g~~~~~~~~~~  144 (384)
T PRK06348         70 ELIEEIIKYYSKNYDLSFKRN--EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFT--PYKDQIEMVGGKPIILETYE  144 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCc--chHHHHHHcCCEEEEecCCc
Confidence            4667777766      45665  7999999999999999988 578998653 32222  12333445688888887632


Q ss_pred             -CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--CCccCCCCC-
Q 035915          233 -LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--GEDRLNLAL-  302 (344)
Q Consensus       233 -~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--G~~~LDLs~-  302 (344)
                       .+..++.++|++.+++     ++++|.++.-+|  |..++.+.+.    .++++++++++|-+-.-.  +.....+.. 
T Consensus       145 ~~~~~~d~~~l~~~~~~-----~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  219 (384)
T PRK06348        145 EDGFQINVKKLEALITS-----KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATL  219 (384)
T ss_pred             CcCCcCCHHHHHHhhCc-----CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhc
Confidence             2335788999888764     355666654445  9999975443    357899999999986630  111112211 


Q ss_pred             ---CCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          303 ---HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       303 ---l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                         .+-.+++.|+=|. ||.|. .+|++++.+++.
T Consensus       220 ~~~~~~vi~~~SfSK~-~~l~GlRiG~~v~~~~~~  253 (384)
T PRK06348        220 AGMPERTITFGSFSKD-FAMTGWRIGYVIAPDYII  253 (384)
T ss_pred             CCCcCcEEEEecchhc-cCCccccceeeecCHHHH
Confidence               1234788899999 87662 389988876543

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=98.82  E-value=7.6e-08  Score=94.80  Aligned_cols=174  Identities=11%  Similarity=0.040  Sum_probs=110.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcC--HHHHHHHHHc---------
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYM-TIIGEE--LDYVREFASF---------  220 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~--~~~ir~la~~---------  220 (344)
                      ......+..+.++++++.+.+  .|+||.|+|+|+..++..+ .+..++.++ ..-.+|  ......+...         
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~--~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  154 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLD--KVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGP  154 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCC
Confidence            345678899999999997555  7999999999999877754 244567754 343444  2222221111         


Q ss_pred             CCcEEEEEeCCCC-----CCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEecc
Q 035915          221 KESKVILAPEAWL-----DLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       221 ~G~kV~~vp~~~~-----~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvDA  288 (344)
                      ....+..+|.+..     +...+.++|++.+++.  ..++++|.+..+. + |.+.|    ++.|.+ ++++|+++++|-
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De  232 (413)
T cd00610         155 LLPGVLHVPYPYRYRPPAELADDLEALEEALEEH--PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE  232 (413)
T ss_pred             CCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC--CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            0223555665421     1123567788777641  1245666666554 3 99888    766654 689999999999


Q ss_pred             cccCcCCc----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          289 TALVVGED----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       289 aQa~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+-.|..    ..+.....+|++++|  |+ ++++-.+|+++.++++.+
T Consensus       233 v~~g~g~~g~~~~~~~~~~~~d~~t~s--K~-l~~g~~~g~~~~~~~~~~  279 (413)
T cd00610         233 VQTGFGRTGKMFAFEHFGVEPDIVTLG--KG-LGGGLPLGAVLGREEIMD  279 (413)
T ss_pred             cccCCCcCcchhhHhhcCCCCCeEEEc--cc-ccCccccEEEEEcHHHHH
Confidence            98741322    123334568988877  99 775455999998876554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=98.81  E-value=3.4e-08  Score=97.49  Aligned_cols=162  Identities=12%  Similarity=0.101  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.||+++|++++  +|++|+|+++++.+++..+ ..+||.++.. -.+  ......++..|++++.+|.+.  +.
T Consensus        66 ~~~Lr~aia~~~~~~~~--~I~vt~Gs~e~i~~~~~~l-~~~gd~vlv~~P~y--~~~~~~~~~~g~~v~~v~~~~--~~  138 (366)
T PRK01533         66 ATTLRQTIANKLHVKME--QVLCGSGLDEVIQIISRAV-LKAGDNIVTAGATF--PQYRHHAIIEGCEVKEVALNN--GV  138 (366)
T ss_pred             HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEcCCcH--HHHHHHHHHcCCEEEEeecCC--CC
Confidence            45699999999999886  7999999999999999987 4689886532 222  223344566799999999863  45


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH----HhCCcEEEecccccCc-CC----ccCC-CCCCC
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA----HRNSWHVLLDATALVV-GE----DRLN-LALHR  304 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a----r~~g~~vlvDAaQa~~-G~----~~LD-Ls~l~  304 (344)
                      ++.++|++.+++     +++++.++.-+|  |.++|.+++.++    ++++ .+++|-+..-. ..    ..+. +...+
T Consensus       139 ~d~~~l~~~~~~-----~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~  212 (366)
T PRK01533        139 YDLDEISSVVDN-----DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHK  212 (366)
T ss_pred             cCHHHHHHHhCc-----CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCC
Confidence            899999888764     356777776666  999999777543    3344 57778775310 10    0111 11122


Q ss_pred             CcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          305 PDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      --+++-|+=|. ||.|. .+|.++..+++.
T Consensus       213 ~vi~~~SfSK~-~~l~GlRiG~~i~~~~~~  241 (366)
T PRK01533        213 NILVLRTFSKA-YGLASFRVGYAVGHEELI  241 (366)
T ss_pred             CEEEEeCchHH-hcChHHHHhHHhCCHHHH
Confidence            34888999999 88662 378887765443

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=98.80  E-value=7.8e-08  Score=94.77  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHH-----HHHHHHHcCCcEEEEEeC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELD-----YVREFASFKESKVILAPE  230 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~-----~ir~la~~~G~kV~~vp~  230 (344)
                      ....++.+++++++|.  .  .++|++++|.|+.+.+.+.- ++|..+++.-+-|+.     .+..+.  .|.++..++ 
T Consensus        35 ~~~~~~e~~~ae~~g~--~--a~~Fv~sGT~aN~lal~~~~-~~~~~vi~~~~aHi~~~E~Ga~~~~~--~~~~~~~~~-  106 (342)
T COG2008          35 PTTNALEQRIAELFGK--E--AALFVPSGTQANQLALAAHC-QPGESVICHETAHIYTDECGAPEFFG--GGQKLPIVP-  106 (342)
T ss_pred             HHHHHHHHHHHHHhCC--c--eEEEecCccHHHHHHHHHhc-CCCCeEEEeccccceecccCcHHHHc--CCceeccCC-
Confidence            3567788899999998  3  59999999999998888764 678776644332311     222221  234443333 


Q ss_pred             CCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc--CCccCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV--GEDRLNLA  301 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~--G~~~LDLs  301 (344)
                       ..+|.++.++|+..++++. .+.++.++++-.+.|  |+++|++++..    ||++|+.+|+|+|=.+-  -...+++.
T Consensus       107 -g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~  185 (342)
T COG2008         107 -GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK  185 (342)
T ss_pred             -CCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH
Confidence             2468999999999887532 234566666554445  99999987754    48999999999985431  11124444


Q ss_pred             C--CCCcEEEEccccCCCCCCCceEEEEE
Q 035915          302 L--HRPDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       302 ~--l~~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      +  -.+|.++|++-|. .|.|  +|++++
T Consensus       186 ~~~~~~D~v~~~~tK~-g~~~--~gAiv~  211 (342)
T COG2008         186 TIKSYVDSVSFCLTKG-GGAP--VGAIVF  211 (342)
T ss_pred             HHHhhCCEEEEecccC-Ccce--eeeEEE
Confidence            3  4799999999998 7767  566655

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=98.79  E-value=6.6e-08  Score=95.18  Aligned_cols=163  Identities=12%  Similarity=0.049  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.||++++++++  +|++|+|+++++.++...+ ..+||.++.. -.|+.  ....++..|.++..+|.+. + .
T Consensus        69 ~~~Lr~~ia~~~~~~~~--~I~it~G~~~~l~~~~~~~-~~~gd~vlv~~p~y~~--~~~~~~~~g~~~~~vp~~~-~-~  141 (369)
T PRK08153         69 NHDLRHALAAHHGVAPE--NIMVGEGIDGLLGLIVRLY-VEPGDPVVTSLGAYPT--FNYHVAGFGGRLVTVPYRD-D-R  141 (369)
T ss_pred             cHHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCcchH--HHHHHHHcCCeEEEeeCCC-C-C
Confidence            46799999999999876  7999999999999998876 4689986643 23331  1222344689999999864 2 3


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH--hCCcEEEecccccCcCCc--cCCCCCCC-CcEE
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH--RNSWHVLLDATALVVGED--RLNLALHR-PDFV  308 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar--~~g~~vlvDAaQa~~G~~--~LDLs~l~-~DFv  308 (344)
                      ++.+++.+.+..    .+++++.++.-+|  |+++|.+.+.+ ++  +.++++++|-+..-.+..  ...+.... --++
T Consensus       142 ~~~~~l~~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~  217 (369)
T PRK08153        142 EDLDALLDAARR----ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIR  217 (369)
T ss_pred             CCHHHHHHHhcc----cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEE
Confidence            677777665542    2456776654445  99999976644 32  348899999986531111  11222212 2377


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +.|+=|. ||.| |  +|+++..++..
T Consensus       218 ~~SfSK~-~g~~-GlRiG~~v~~~~~~  242 (369)
T PRK08153        218 MRTFSKA-YGLA-GARVGYAIGAPGTI  242 (369)
T ss_pred             EecchHh-ccCc-chheeeeecCHHHH
Confidence            8899999 8867 6  69998876544

>PRK09148 aminotransferase; Validated

Probab=98.79  E-value=1.3e-07  Score=94.43  Aligned_cols=166  Identities=9%  Similarity=-0.019  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.+|+++    |  +++++ +|++|+|+++|+.+++..+ ..+||.|+ ..-.+..  ....+...|+++..+|.+
T Consensus        71 ~~lr~aia~~~~~~~g~~~~~~~-~I~it~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~--~~~~~~~~g~~v~~v~~~  146 (405)
T PRK09148         71 PGLRRAQAAYYARRFGVKLNPDT-QVVATLGSKEGFANMAQAI-TAPGDVILCPNPSYPI--HAFGFIMAGGVIRSVPAE  146 (405)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC-cEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCCcc--cHHHHHhcCCEEEEEeCC
Confidence            45777788776    4  44432 6999999999999999988 56899865 3344431  122234569999999886


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--CCcc-CCCCC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--GEDR-LNLAL  302 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--G~~~-LDLs~  302 (344)
                      ..+.  ..+++++.++..  ..+++++.+..-+|  |..+|.+.+.    .|+++++++++|-+..-.  +..+ ..+..
T Consensus       147 ~~~~--~~~~l~~~~~~~--~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~  222 (405)
T PRK09148        147 PDEE--FFPALERAVRHS--IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQ  222 (405)
T ss_pred             CCCC--CccCHHHHHhhc--cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhh
Confidence            4322  233455544321  12466777765455  9999985433    358899999999987530  1111 11211


Q ss_pred             C----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 H----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +    +..+++.|+-|. ||.| |  +|+++..+++.+
T Consensus       223 ~~~~~~~~i~~~SfSK~-~~~p-GlR~G~~v~~~~~i~  258 (405)
T PRK09148        223 VPGAKDVTVEFTSMSKT-FSMA-GWRMGFAVGNERLIA  258 (405)
T ss_pred             CCCccCcEEEEeccccc-cCCc-chheeeeeCCHHHHH
Confidence            1    234678999999 8867 6  999987765543

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=98.77  E-value=1.3e-07  Score=93.42  Aligned_cols=166  Identities=12%  Similarity=0.049  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHc--------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe--EEEc-CCcCHHHHHHHHHcCCcEEEE
Q 035915          159 IQARNKVLKHC--------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF--YMTI-IGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       159 e~AR~~IA~~L--------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~--ivS~-~eH~~~~ir~la~~~G~kV~~  227 (344)
                      .+.|+.||+++        |+++++ +|++|+|+++|+.+++..+ ..+|+.  ++.. -.+.  .....++..|++++.
T Consensus        67 ~~lr~aia~~~~~~~~~~~~~~~~~-~i~it~Ga~~al~~~~~~l-~~~gd~~~vlv~~P~y~--~~~~~~~~~g~~~~~  142 (393)
T TIGR03538        67 PELRQAIARWLERRFDLPTGVDPER-HVLPVNGTREALFAFAQAV-INPGQAPLVVMPNPFYQ--IYEGAALLAGAEPYF  142 (393)
T ss_pred             HHHHHHHHHHHHHhhCCcccCCCCc-eEEECCCcHHHHHHHHHHH-cCCCCcceEEecCCCCc--chHHHHHhcCCeEEE
Confidence            45778888877        355532 6999999999999999887 467875  4322 1222  123445667999999


Q ss_pred             EeCCCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcC-C---c
Q 035915          228 APEAWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVG-E---D  296 (344)
Q Consensus       228 vp~~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G-~---~  296 (344)
                      +|.+..+ ..++.+++++.+.+     +++++.++.-+|  |..++.+.+.    .|+++++++++|-+-.-.- .   .
T Consensus       143 v~~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~  217 (393)
T TIGR03538       143 LNCTAENGFLPDFDAVPESVWR-----RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNP  217 (393)
T ss_pred             eeccccCCCCCCHHHHHHHHhh-----cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCC
Confidence            9985332 34678888877754     356776664456  9999974443    3578999999999865311 0   1


Q ss_pred             cCCC----CCCCC-----cEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          297 RLNL----ALHRP-----DFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       297 ~LDL----s~l~~-----DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +..+    ...+.     -+++.|+=|. |+.|. .+|+++..+++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~-~~~~GlRvG~~i~~~~l~~  264 (393)
T TIGR03538       218 PAGLLQAAAQLGRDDFRRCLVFHSLSKR-SNLPGLRSGFVAGDAEILK  264 (393)
T ss_pred             CcCHHHhcccccccccccEEEEecchhh-cCCcccceEEEecCHHHHH
Confidence            1111    11111     2889999997 77663 4888887665543

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.76  E-value=1.1e-07  Score=96.50  Aligned_cols=170  Identities=9%  Similarity=0.038  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      ...+.+|.+..|+++|++.   ....|.|+|.|+..++.+. ..+||.|+..-.-|...+..+ .-.|++.++++.... 
T Consensus        65 ~G~I~eAe~~aA~~fGAd~---t~flvnGsT~g~~a~i~a~-~~~gd~VLv~RN~HkSv~~al-il~ga~Pvyi~p~~~~  139 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGADK---TFFLVNGSTSGNQAMIMAL-CRPGDKVLVDRNCHKSVYNAL-ILSGAIPVYIPPEDNE  139 (417)
T ss_dssp             BTHHHHHHHHHHHHHTESE---EEEESSHHHHHHHHHHHHH-TTTTCEEEEETT--HHHHHHH-HHHTEEEEEEEEEE-T
T ss_pred             ccHHHHHHHHHHHhcCCCe---EEEEecCchHHHHHHHHHh-cCCCCEEEEcCCcHHHHHHHH-HHcCCeEEEecCCccc
Confidence            3468899999999999962   3555677777888777765 478999876655341112222 124888888754321 


Q ss_pred             ---CCccCH-----HHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHH-HHHhCCcEEEecccccCcCCccCC----
Q 035915          234 ---DLRIKG-----SQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLN----  299 (344)
Q Consensus       234 ---~g~i~~-----~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LD----  299 (344)
                         -+.++.     ++|+++++........++|.++.-+- |+.++++.|. .+|++++.++||.||..  |..+.    
T Consensus       140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGa--h~~F~~lp~  217 (417)
T PF01276_consen  140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGA--HFGFHPLPR  217 (417)
T ss_dssp             TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-T--TGGCSGGGT
T ss_pred             cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccc--cccCCCCcc
Confidence               123555     88999887532111235677775443 9999998775 57999999999999985  33333    


Q ss_pred             -CCCCCCc-------EEEEccccCCCCCCCceEEEEEeCCC
Q 035915          300 -LALHRPD-------FVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       300 -Ls~l~~D-------Fvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                       -..+++|       +++-|.||. +++-+....|.++.+.
T Consensus       218 ~a~~~gad~~~~~~~~vvqS~HKt-L~altQts~lh~~~~~  257 (417)
T PF01276_consen  218 SALALGADRPNDPGIIVVQSTHKT-LPALTQTSMLHVKGDR  257 (417)
T ss_dssp             TCSSTTSS-CTSBEEEEEEEHHHH-SSS-TT-EEEEEETCC
T ss_pred             chhhccCccccccceeeeechhhc-ccccccceEEEecCCC
Confidence             2347899       999999999 7778899999999885

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK10534 L-threonine aldolase; Provisional

Probab=98.76  E-value=5e-08  Score=93.85  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHH-HHcC-CcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREF-ASFK-ESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~l-a~~~-G~kV~~vp~~~~  233 (344)
                      ...+.|+.|++++|+++    +++|.|+++++.+....+ ..+|++++.. ..|... .... +... +++++.++.+. 
T Consensus        35 ~~~~L~~~la~~~g~~~----~~v~~~g~~a~~~~l~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  107 (333)
T PRK10534         35 TVNALQDYAAELSGKEA----ALFLPTGTQANLVALLSH-CERGEEYIVGQAAHNYL-YEAGGAAVLGSIQPQPIDAAA-  107 (333)
T ss_pred             HHHHHHHHHHHHhCCCe----EEEeCchHHHHHHHHHHh-cCCCCeeEEechhhhhH-hcCCchHHhcCceEEeecCCC-
Confidence            45778999999999853    468888888877665554 5688886532 233211 1100 1112 35666677654 


Q ss_pred             CCccCHHHHHHHhhhcCCC-CCeeEEEEeCccccccccHHHHH----HHHhCCcEEEecccccCcCCc---cCCCC--CC
Q 035915          234 DLRIKGSQLSQYFRRKCKH-TPKGLFSYPADINGTRYSMHWIS----EAHRNSWHVLLDATALVVGED---RLNLA--LH  303 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~-~~t~LVa~~avSNG~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~---~LDLs--~l  303 (344)
                      +..++.++|+++++++... .++++|.+...+||+++|.+.+.    .++++++++++|.++.. +..   ...+.  ..
T Consensus       108 ~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~-~~~~~~~~~~~~~~~  186 (333)
T PRK10534        108 DGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVDGARIF-NAVVAYGCELKEITQ  186 (333)
T ss_pred             CCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHH-HHHHHcCCCHHHHHh
Confidence            4678899998888541100 13677777744469999997664    35778999999998765 421   11111  11


Q ss_pred             CCcEEEEccccCCCCCCCceEE-EEEeCCCc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITC-LLIRKKSF  333 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~-L~Vr~~~~  333 (344)
                      ..|.+++|+.|. ||.|  +|+ ++..++..
T Consensus       187 ~~~~~~~s~SK~-~~~~--~G~~~~~~~~~i  214 (333)
T PRK10534        187 YCDSFTICLSKG-LGTP--VGSLLVGNRDYI  214 (333)
T ss_pred             cCCEEEEEeEcC-CCCc--ccceEEcCHHHH
Confidence            357777899998 8866  774 54455443

>PRK08175 aminotransferase; Validated

Probab=98.76  E-value=2.4e-07  Score=91.79  Aligned_cols=167  Identities=10%  Similarity=0.013  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.|++++    |  +++++ +|++|+|+++++++++..+ ..+|+.|+ ..-.+...  ...++..|+++..+|.
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~-~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~--~~~~~~~g~~~~~v~~  144 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPES-EAIVTIGSKEGLAHLMLAT-LDHGDTVLVPNPSYPIH--IYGAVIAGAQVRSVPL  144 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcch--HHHHHHcCCeEEEEec
Confidence            345667777765    3  34432 5999999999999998877 57899865 33444311  1112346899999988


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc---CCccCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      +..+  ...++|++.++..  ..+++++.+...+|  |..++.+.   | ..|+++|+++++|-+..-.   +.....+.
T Consensus       145 ~~~~--~~~~~l~~~l~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~  220 (395)
T PRK08175        145 VEGV--DFFNELERAIRES--YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIM  220 (395)
T ss_pred             ccCC--CcHHHHHHHHhhc--cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchh
Confidence            7532  2467788777531  12467777764455  99999953   3 2358899999999876420   11112221


Q ss_pred             C----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          302 L----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       302 ~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .    .+..+++.|+=|. ||.| |  +|+++..+++.+
T Consensus       221 ~~~~~~~~~i~~~S~SK~-~g~p-GlRiG~~~~~~~l~~  257 (395)
T PRK08175        221 QVPGAKDVAVEFFTLSKS-YNMA-GWRIGFMVGNPELVS  257 (395)
T ss_pred             cCCCcccCEEEEeecccc-ccCc-chhheeeeCCHHHHH
Confidence            1    1233678999999 8877 5  798887665544

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=98.75  E-value=2.9e-07  Score=90.16  Aligned_cols=159  Identities=9%  Similarity=0.044  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC-Cc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD-LR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~-g~  236 (344)
                      ..+.|++||++++++++  +|++|+|+++++++++..+  .++..++..-.++  .+...++..|++++.+|.+..+ ..
T Consensus        56 ~~~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~~--~~~~v~i~~P~y~--~~~~~~~~~g~~~~~~~~~~~~~~~  129 (354)
T PRK06358         56 YLELRKRIASFEQLDLE--NVILGNGATELIFNIVKVT--KPKKVLILAPTFA--EYERALKAFDAEIEYAELTEETNFA  129 (354)
T ss_pred             HHHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHHh--CCCcEEEecCChH--HHHHHHHHcCCeeEEEeCccccCCC
Confidence            46899999999999887  7999999999999999886  3344344222222  2334456679999999876432 24


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--CCcc---CC-CCCCC
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--GEDR---LN-LALHR  304 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--G~~~---LD-Ls~l~  304 (344)
                      ++ +++.+.+.+     +++++.+..-+|  |..++.+.+.    .++++++++++|.+-.-.  ...+   +. +...+
T Consensus       130 ~d-~~~~~~~~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~  203 (354)
T PRK06358        130 AN-EIVLEEIKE-----EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFK  203 (354)
T ss_pred             cc-HHHHHhhcc-----CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCC
Confidence            66 455555533     356665554456  9999964333    357899999999985420  1001   11 11111


Q ss_pred             CcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          305 PDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      -=+++.|+=|. ||.|. .+|.+++.
T Consensus       204 ~vi~~~S~SK~-~gl~G~RiG~lv~~  228 (354)
T PRK06358        204 NLIIIRAFTKF-FAIPGLRLGYGLTS  228 (354)
T ss_pred             CEEEEEechhh-ccCcchhheeeecC
Confidence            22778999999 88663 48888774

>PRK07049 methionine gamma-lyase; Validated

Probab=98.73  E-value=4.8e-07  Score=91.75  Aligned_cols=162  Identities=11%  Similarity=0.005  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC-H-HHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE-L-DYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~-~-~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .....++++|++.|++    ++++++|+++|+.++..++ .++||+++.. --+. . ..+...++..|++++.++..  
T Consensus        84 t~~~Le~~lA~leg~~----~~iv~~sG~~Ai~~~l~al-~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~--  156 (427)
T PRK07049         84 NSEIVEDRLAVYEGAE----SAALFSSGMSAIATTLLAF-VRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG--  156 (427)
T ss_pred             CHHHHHHHHHHHhCCC----cEEEEccHHHHHHHHHHHH-hCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC--
Confidence            4567888999999864    3777888888999888776 4689986533 2233 2 22344455679886666521  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh------CCcEEEecccccC-cCCccCCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR------NSWHVLLDATALV-VGEDRLNLALH  303 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~------~g~~vlvDAaQa~-~G~~~LDLs~l  303 (344)
                         .+.+++++.+.+.....++++|.+..-+|  |.++|++.+.+ ++.      +++.+++|-+=+- +...++   ..
T Consensus       157 ---~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl---~~  230 (427)
T PRK07049        157 ---LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPL---EH  230 (427)
T ss_pred             ---CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCcc---cc
Confidence               34566776664322112577887776666  99999988765 454      6899999998322 022333   35


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      ++|+++.|+-|. ||+..|  +|+++.++++
T Consensus       231 g~divv~S~SK~-~gG~~glr~G~vv~~~~l  260 (427)
T PRK07049        231 GADLSVYSLTKY-VGGHSDLVAGAVLGRKAL  260 (427)
T ss_pred             CCCEEEEcCcee-ecCCCCcEEEEEECCHHH
Confidence            789999999999 885333  6776655543

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=98.72  E-value=2e-07  Score=90.98  Aligned_cols=164  Identities=11%  Similarity=0.096  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCC-CC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWL-DL  235 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~-~g  235 (344)
                      ..+.|+.||++++++++  +|++|+|+++++++++..+ .++||.++. .-.+..  ....+...|.+++.+|.+.. +.
T Consensus        67 ~~~lr~~ia~~~~~~~~--~I~it~G~~~al~~~~~~~-~~~gd~V~v~~P~y~~--~~~~~~~~g~~~~~~~l~~~~~~  141 (357)
T PRK14809         67 HADLTAALADRWDVSPE--QVWLANGGDGALDYLARAM-LDPGDTVLVPDPGFAY--YGMSARYHHGEVREYPVSKADDF  141 (357)
T ss_pred             HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCChHH--HHHHHHHcCCeEEEEecccCcCC
Confidence            45789999999999887  7999999999999999887 578998643 222221  12234456888888887532 23


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH--hCCcEEEecccccCcCCc--cCCC-CCCCCcE
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH--RNSWHVLLDATALVVGED--RLNL-ALHRPDF  307 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar--~~g~~vlvDAaQa~~G~~--~LDL-s~l~~DF  307 (344)
                      .++.+++.+...      +++++.++.-+|  |+.+|.+.+.+ ++  +.++++++|-+..-....  .+.+ ...+--+
T Consensus       142 ~~~~~~~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi  215 (357)
T PRK14809        142 EQTADTVLDAYD------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVA  215 (357)
T ss_pred             CcCHHHHHHhhc------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEE
Confidence            455666655432      256666665556  99999976644 32  237889999987631111  1111 1111226


Q ss_pred             EEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++.|+=|. ||.| |  +|.++..++..+
T Consensus       216 ~~~SfSK~-~~~~-GlRiG~~~~~~~~~~  242 (357)
T PRK14809        216 VLRTFSKA-YGLA-GLRLGYAVVPEEWAD  242 (357)
T ss_pred             EEecchhH-hcCc-chhheeeecCHHHHH
Confidence            77899999 8856 5  799888765544

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.72  E-value=5.4e-07  Score=90.14  Aligned_cols=160  Identities=15%  Similarity=0.103  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.||+++      +++++  +|++|+|+++|+.+++..+ ..+|+.++ ..-.++.  ....++..|++++.++.+
T Consensus        77 ~~lr~aia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~v~~P~y~~--~~~~~~~~g~~~~~~~~~  151 (409)
T PLN00143         77 LPARRAIADYLSNDLPYQLSPD--DVYLTLGCKHAAEIIIKVL-ARPEANILLPRPGFPD--VETYAIFHHLEIRHFDLL  151 (409)
T ss_pred             HHHHHHHHHHHHhhcCCCCCHh--hEEEecChHHHHHHHHHHH-cCCCCEEEEcCCCCcC--HHHHHHHcCCEEEEEecc
Confidence            44788888887      35655  7999999999999999987 46888864 3333331  233455578999888874


Q ss_pred             C-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--CCcc-CCCC
Q 035915          232 W-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--GEDR-LNLA  301 (344)
Q Consensus       232 ~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--G~~~-LDLs  301 (344)
                      . .+..++.++|++++++     +++++.+..-+|  |.+++.+.+.    .|+++++++++|-+..-.  ...+ ..+.
T Consensus       152 ~~~~~~~d~~~l~~~~~~-----~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~  226 (409)
T PLN00143        152 PEKGWEVDLDAVEAIADE-----NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMG  226 (409)
T ss_pred             CCCCCcCCHHHHHHhccc-----CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchh
Confidence            2 2235788999887754     345555554456  9999975443    357899999999987530  1111 1122


Q ss_pred             CCC---CcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          302 LHR---PDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       302 ~l~---~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      .+.   .=+++.|+=|. |+.|. .+|.++..
T Consensus       227 ~~~~~~~vi~~~SfSK~-f~~pGlRvG~~v~~  257 (409)
T PLN00143        227 LFASIVPVITLGSISKR-WMIPGWGLGWLVTC  257 (409)
T ss_pred             hhcccCcEEEEccchhh-cCCCccceEEEEee
Confidence            121   23788999999 88773 48988883

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.71  E-value=1.2e-07  Score=93.78  Aligned_cols=193  Identities=18%  Similarity=0.171  Sum_probs=117.0

Q ss_pred             cCCCCCC---cccccchHHHHHHhhccC-C----CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHHHHHHH
Q 035915          122 FGSNLPD---LDRTQLEPSRLLDILTKK-S----SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTP-NYRDAMMLVG  192 (344)
Q Consensus       122 ~Ga~lp~---~s~v~~~~~~L~~~L~gn-s----s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTs-naTeAlnlva  192 (344)
                      |++. |+   .++++..++.+.+..--. |    |.-+......+.+|++.+.++|+++ ++|+|.|.. |+|..+.++.
T Consensus         9 FsaG-Pa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iP-d~Y~VlflqGGat~qf~~~p   86 (365)
T COG1932           9 FSAG-PAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIP-DDYKVLFLQGGATGQFAMAP   86 (365)
T ss_pred             CCCC-cccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCccHHHHHHHH
Confidence            5555 43   344555666666643211 1    1223344556799999999999996 689999995 8888888888


Q ss_pred             hhCCCCCCC-eEE-EcCCcCHHHHHHHHHcCCc--EEEEEe-CCCCCCcc-CHHHHHHHhhhcCCCCCeeEEEEeCccc-
Q 035915          193 ESYPFFRGN-FYM-TIIGEELDYVREFASFKES--KVILAP-EAWLDLRI-KGSQLSQYFRRKCKHTPKGLFSYPADIN-  265 (344)
Q Consensus       193 ~sl~~~~Gd-~iv-S~~eH~~~~ir~la~~~G~--kV~~vp-~~~~~g~i-~~~~L~~~l~~~~~~~~t~LVa~~avSN-  265 (344)
                      .++--..+- .+. ..++.-  +..+ |+..+.  ++...- ....-+.+ +.+...  +.+     ....|.+++..+ 
T Consensus        87 ~nLl~~~~~~yv~~g~Ws~~--a~~e-A~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-----~~ayv~~~~NeTi  156 (365)
T COG1932          87 MNLLGKRGTDYVDTGAWSEF--AIKE-AKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-----NDAYVHFCWNETI  156 (365)
T ss_pred             HhhhcccCceeEeeeehhHh--HHHH-HHHhcccccccccceeccCccCCCChhhcc--cCC-----CccEEEEecCCcc
Confidence            776433332 232 233311  1111 222221  111111 01001111 111100  111     134577776554 


Q ss_pred             -cccccH-HHHHHHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          266 -GTRYSM-HWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       266 -G~i~Pl-~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                       |+..|. ..+.    .+.++++|++..+ ...++|++.  .|.+.++..|- +| |.|++++++|++++++
T Consensus       157 ~Gv~v~~~p~~~----~~~~~v~D~SS~i-lsr~iDvsk--~dviyagaQKn-lG-paGltvvIvr~~~l~r  219 (365)
T COG1932         157 SGVEVPELPDIG----SDGLLVADASSAI-LSRPIDVSK--YDVIYAGAQKN-LG-PAGLTVVIVRPDLLER  219 (365)
T ss_pred             cceEccCCCCCC----CCceEEEecccHH-hcCCCChhH--cceEEEehhhc-cC-ccceEEEEEcHHHHhc
Confidence             887773 2221    1288999999999 999999985  79999999999 88 9999999999999887

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.71  E-value=2.1e-07  Score=91.03  Aligned_cols=152  Identities=13%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             HHHHHHHHc-------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          161 ARNKVLKHC-------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       161 AR~~IA~~L-------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .|+.+++++       |++++  +|++|+|+++++.++...+..++||.++. ...+.  .....++..|++++.++.  
T Consensus        61 lr~~ia~~~~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~--~~~~~~~~~g~~~~~v~~--  134 (357)
T TIGR03539        61 LREAIVDWLERRRGVPGLDPT--AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYP--TYEVGALLAGATPVAADD--  134 (357)
T ss_pred             HHHHHHHHHHHhcCCCCCCcC--eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcH--HHHHHHHhcCCEEeccCC--
Confidence            455566655       46665  79999999999999887765678998764 33333  223334556888776531  


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCcCCccCCCCCC---
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVVGEDRLNLALH---  303 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~G~~~LDLs~l---  303 (344)
                            .+.+    .+    .+++++.++..+|  |..+|.+.   | +.|+++|+++++|.+........-.+..+   
T Consensus       135 ------~~~l----~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  200 (357)
T TIGR03539       135 ------PTEL----DP----VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPR  200 (357)
T ss_pred             ------hhhc----Cc----cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecc
Confidence                  1112    11    1467777765556  99999754   3 33588999999999875212111011111   


Q ss_pred             ------CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          304 ------RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       304 ------~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                            .-.+++.|+-|. ||.| |  +|.++..++..+
T Consensus       201 ~~~~~~~~vi~~~S~SK~-~~~~-G~R~G~~i~~~~~~~  237 (357)
T TIGR03539       201 VCGGDHTGLLAVHSLSKR-SNLA-GYRAGFVAGDPALVA  237 (357)
T ss_pred             cCCCccccEEEEeccccc-cCCC-ceeEEEEecCHHHHH
Confidence                  123888899998 8766 6  688877655443

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=98.68  E-value=6e-09  Score=108.58  Aligned_cols=198  Identities=17%  Similarity=0.124  Sum_probs=129.9

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCC---hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSF---PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF  198 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~---~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~  198 (344)
                      .|++++..++....+.....+-..|++.   .++.....+++.|-+|..+++.+..+|.++||. .|+|+++++++|||-
T Consensus        27 ag~tl~sesq~~g~~~~sq~~e~~nphs~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae~fp~~  105 (728)
T KOG2142|consen   27 AGRTLFSESQLEGVAFQSQSSENANPHSHLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAEAFPFY  105 (728)
T ss_pred             hhhhhhhhcccchhhhhhhccccCCCcccccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHHhCccc
Confidence            6889898888777666666655555322   344455677999999999999998999999999 999999999999984


Q ss_pred             -CCCeE---EEcC-CcCHHH---HHHHHHcCCcEEEEE-eCC--CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--
Q 035915          199 -RGNFY---MTII-GEELDY---VREFASFKESKVILA-PEA--WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--  265 (344)
Q Consensus       199 -~Gd~i---vS~~-eH~~~~---ir~la~~~G~kV~~v-p~~--~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--  265 (344)
                       .+.++   =+.. .|-+..   ++.  ...|+-+..+ ...  |. .  +...+.+... +.  ....|++.++++|  
T Consensus       106 s~tekid~lrs~~y~hls~s~~~~~~--~~~~~gl~sy~q~~~i~~-~--~~~sls~~~~-~l--s~~~L~~g~a~~nfe  177 (728)
T KOG2142|consen  106 SQTEKIDNLRSDEYGHLSSSGHLMRL--DYSGIGLFSYSQTNEISD-S--EEFSLSESEA-NL--SEHSLFGGAAQSNFE  177 (728)
T ss_pred             cccccccchhhhhhcccccccceeee--eeeccceEEeeeeeeccc-c--cccccccccc-Cc--ccchhcccchhcccc
Confidence             23222   1111 111111   111  1112222221 111  11 1  1111111111 11  1357999999998  


Q ss_pred             cccccHHHHHHHH-hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          266 GTRYSMHWISEAH-RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       266 G~i~Pl~~Ia~ar-~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      |.++-...+..++ ..+|+++||++..+ ...+||++..++||... ++|+ ||+|+  |+|.+.++..
T Consensus       178 g~kik~ri~d~L~ipe~~y~lldtaSrv-Saf~Ldaesy~f~~~~~-llti-Fgyet--gAvlv~~r~A  241 (728)
T KOG2142|consen  178 GDKIKLRIMDRLNIPESEYVLLDTASRV-SAFPLDAESYPFDFNPK-LLTI-FGYET--GAVLVMNRSA  241 (728)
T ss_pred             cceeeeeeecccccCCceEEEEEeeccc-ccccchHhhCCCcccch-heee-cCCCc--hhhHHHhhhh
Confidence            8873333334443 57999999999999 99999999999999999 9999 99997  7777765543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.68  E-value=2.1e-06  Score=86.42  Aligned_cols=161  Identities=12%  Similarity=0.006  Sum_probs=111.8

Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEE
Q 035915          149 FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKV  225 (344)
Q Consensus       149 ~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV  225 (344)
                      ..++...-......++++.+-|+.    .++.++++-.|+..+..++ .++||+++ +..-+.  ...++.+..+.|+++
T Consensus        48 ~Y~R~gnPt~~~le~~la~Le~g~----~a~~~~SGmaAi~~~l~~l-l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v  122 (386)
T PF01053_consen   48 IYSRYGNPTVRALEQRLAALEGGE----DALLFSSGMAAISAALLAL-LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV  122 (386)
T ss_dssp             SBTTTC-HHHHHHHHHHHHHHT-S----EEEEESSHHHHHHHHHHHH-S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE
T ss_pred             ceeccccccHHHHHHHHHHhhccc----ceeeccchHHHHHHHHHhh-cccCCceEecCCccCcchhhhhhhhcccCcEE
Confidence            345555566778888899999983    4666788888887777776 57899965 333344  334555566789999


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC-cEEEecccccCcCC--ccCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS-WHVLLDATALVVGE--DRLN  299 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g-~~vlvDAaQa~~G~--~~LD  299 (344)
                      .+++.+      +.++|++++++     +|++|-+-..+|  ..+.||+.|++ +|++| +.++||.+-+- +.  .|++
T Consensus       123 ~~~d~~------d~~~l~~~l~~-----~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at-p~~~~pL~  190 (386)
T PF01053_consen  123 TFVDPT------DLEALEAALRP-----NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT-PYNQNPLE  190 (386)
T ss_dssp             EEESTT------SHHHHHHHHCT-----TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH-TTTC-GGG
T ss_pred             EEeCch------hHHHHHhhccc-----cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc-eeeeccCc
Confidence            888653      56789999976     488888887777  89999988865 69998 99999999876 42  2333


Q ss_pred             CCCCCCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                         +++|+++-|+-|+ ++|-..  .|+++++.
T Consensus       191 ---~GaDivv~S~TKy-l~Ghsdv~~G~vv~~~  219 (386)
T PF01053_consen  191 ---LGADIVVHSATKY-LSGHSDVMGGAVVVNG  219 (386)
T ss_dssp             ---GT-SEEEEETTTT-TTTSSSE-EEEEEESS
T ss_pred             ---CCceEEEeecccc-ccCCcceeeEEEEECc
Confidence               6799999999999 776632  56666654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK08068 transaminase; Reviewed

Probab=98.68  E-value=5.8e-07  Score=88.79  Aligned_cols=166  Identities=10%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|++||+++    |  +++++ +|+.|+|+++++.+++..+ ..+|+.++ ..-.+.  .....++..|++++.+|.
T Consensus        72 ~~~lr~aia~~~~~~~g~~~~~~~-~i~it~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~--~~~~~~~~~g~~~~~i~~  147 (389)
T PRK08068         72 YPFLKEAAADFYKREYGVTLDPET-EVAILFGGKAGLVELPQCL-MNPGDTILVPDPGYP--DYLSGVALARAQFETMPL  147 (389)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCc-cEEEcCCcHHHHHHHHHHh-CCCCCEEEEcCCCCc--chHHHHHhcCCEEEEeec
Confidence            345777777776    5  45542 5999999999999988877 46888754 333332  122334557999999998


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.. +..++.+++++.++.     ++++|.+..-+|  |++++.+.+.    .++++++++++|-+..-.   +..+..+
T Consensus       148 ~~~~~~~~d~~~l~~~~~~-----~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~  222 (389)
T PRK08068        148 IAENNFLPDYTKIPEEVAE-----KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSF  222 (389)
T ss_pred             ccccCCCCCHHHHHHhccc-----cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcCh
Confidence            643 234677888877754     356666653345  9999996543    347889999999987420   1112221


Q ss_pred             -C---CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 -A---LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 -s---~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       .   ..+..+++.|+=|. ||.| |  +|.++..++..+
T Consensus       223 ~~~~~~~~~~i~~~S~SK~-~g~~-GlRiG~~~~~~~l~~  260 (389)
T PRK08068        223 LQTPGAKDVGIELYTLSKT-FNMA-GWRVAFAVGNESVIE  260 (389)
T ss_pred             hhCCCccCCEEEEecchhc-cCCc-cceeEeEecCHHHHH
Confidence             1   11234788899999 8866 6  899987765543

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.66  E-value=2.1e-07  Score=93.38  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=104.5

Q ss_pred             HHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHH----HHHHHHHcCCcEEEEEeCCCCCCccCHHHH
Q 035915          167 KHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELD----YVREFASFKESKVILAPEAWLDLRIKGSQL  242 (344)
Q Consensus       167 ~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~----~ir~la~~~G~kV~~vp~~~~~g~i~~~~L  242 (344)
                      .+++++-.+ .++.+.|.+.|+-++..++.  .+.+++...+|.++    .+....+..|++++.+-..   .+-...++
T Consensus        76 ~~~~~~~ae-a~~ivnnn~aAVll~~~al~--~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n~t~~~d~  149 (395)
T COG1921          76 LLCGLTGAE-AAAIVNNNAAAVLLTLNALA--EGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---NRTHLKDY  149 (395)
T ss_pred             HHhcccchh-heeeECCcHHHHHHHHhhhc--cCCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc---CcCCHHHH
Confidence            345554222 57778888888877777764  35554433333321    2445556679988877543   34577889


Q ss_pred             HHHhhhcCCCCCeeEEEEeCccc-ccc--ccHHHH-HHHHhCCcEEEecccccCcCCccCCCC---CCCCcEEEEccccC
Q 035915          243 SQYFRRKCKHTPKGLFSYPADIN-GTR--YSMHWI-SEAHRNSWHVLLDATALVVGEDRLNLA---LHRPDFVLCNLDNT  315 (344)
Q Consensus       243 ~~~l~~~~~~~~t~LVa~~avSN-G~i--~Pl~~I-a~ar~~g~~vlvDAaQa~~G~~~LDLs---~l~~DFvv~S~HK~  315 (344)
                      +.++.++     |.+.-..+.+| |..  ++++.+ ..+|++|+++++|++...+=....+++   +.++|.+++|+||+
T Consensus       150 ~~AIne~-----ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKl  224 (395)
T COG1921         150 ELAINEN-----TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKL  224 (395)
T ss_pred             HHHhccC-----CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchh
Confidence            9999863     56666666666 443  456545 557999999999998865101123444   36899999999999


Q ss_pred             CCCCCCceEEEEEeCCCccc
Q 035915          316 QNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       316 l~G~P~GiG~L~Vr~~~~~~  335 (344)
                       ||||+ .|++..|+++.+.
T Consensus       225 -lgGPq-aGii~GkKelI~~  242 (395)
T COG1921         225 -LGGPQ-AGIIVGKKELIEK  242 (395)
T ss_pred             -cCCCc-cceEechHHHHHH
Confidence             99997 8999999887654

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=98.64  E-value=7.6e-07  Score=88.16  Aligned_cols=166  Identities=13%  Similarity=0.049  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHc----C---CCCCCCeEEEeCCHHHHHHHHHhhCCCCC---CCeEEEc-CCcCHHHHHHHHHcCCcEEEE
Q 035915          159 IQARNKVLKHC----G---LPDDEYLVLFTPNYRDAMMLVGESYPFFR---GNFYMTI-IGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       159 e~AR~~IA~~L----g---a~p~ey~VVFTsnaTeAlnlva~sl~~~~---Gd~ivS~-~eH~~~~ir~la~~~G~kV~~  227 (344)
                      .+.|+.||+++    |   +++++ +|+.|+|+++|+.+++..+. .+   |+.++.. -.+.  .....++..|++++.
T Consensus        68 ~~lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~--~~~~~~~~~g~~~~~  143 (396)
T PRK09147         68 PALREAIAAWLERRYGLPALDPAT-QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQ--IYEGAALLAGAEPYF  143 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCcCCccc-eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCcc--chHHHHHhcCCEEEE
Confidence            34677777765    6   44432 69999999999999998873 56   7775532 2222  123334557999999


Q ss_pred             EeCCCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--CC--c
Q 035915          228 APEAWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--GE--D  296 (344)
Q Consensus       228 vp~~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--G~--~  296 (344)
                      +|.+..+ ..++.++|++.+.+     +++++.++.-+|  |.+++.+.+.    .|+++++++++|=+-.-.  ..  .
T Consensus       144 vp~~~~~~~~~d~~~l~~~~~~-----~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  218 (396)
T PRK09147        144 LNCDPANNFAPDFDAVPAEVWA-----RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAP  218 (396)
T ss_pred             eccCccccCccCHHHHHHHHhh-----ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCC
Confidence            9986432 25788888877654     356666654446  9999886554    347899999999886531  11  1


Q ss_pred             cCC-CC---CCCCc-----EEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          297 RLN-LA---LHRPD-----FVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       297 ~LD-Ls---~l~~D-----Fvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +.. ++   ..+.|     +++.|+=|. ||.|. .+|.++..+++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~~~~GlRiG~~~~~~~l~~  265 (396)
T PRK09147        219 PLGLLEAAAELGRDDFKRLVVFHSLSKR-SNVPGLRSGFVAGDAALLK  265 (396)
T ss_pred             CchhhhhccccCccccccEEEEeccccc-cCCccceeeeecCCHHHHH
Confidence            111 11   11222     889999998 77672 4898887765544

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=98.61  E-value=1e-06  Score=86.85  Aligned_cols=166  Identities=10%  Similarity=0.047  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.||+++    |  +++++ +|+.|+|+++|+.++...+ ..+||.++ ..-.+..  ....++..|++++.+|.+
T Consensus        71 ~~lr~aia~~~~~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~  146 (388)
T PRK07366         71 LDFREAAAQWYEQRFGLAVDPET-EVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPS--HAGGVYLAGGQIYPMPLR  146 (388)
T ss_pred             HHHHHHHHHHHHHhhCCcCCCcC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcc--hHHHHHhcCCEEEEEECC
Confidence            45777788877    4  55542 5999999999999999876 35899864 2222221  233345579999999986


Q ss_pred             CCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc---CCc-cCCC
Q 035915          232 WLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV---GED-RLNL  300 (344)
Q Consensus       232 ~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~---G~~-~LDL  300 (344)
                      ..+ ..++.+++.+.+.+     +++++.++.-+|  |..++.+.+.+    |+++++++++|-+-.-.   +.. ...+
T Consensus       147 ~~~~~~~d~~~l~~~~~~-----~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~  221 (388)
T PRK07366        147 AENDFLPVFADIPTEVLA-----QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSI  221 (388)
T ss_pred             CccCCCCCHHHHHHhhcc-----cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCCh
Confidence            432 23566677666543     356666654446  99999965543    47889999999765420   111 1122


Q ss_pred             CCCC----CcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          301 ALHR----PDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l~----~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      ..+.    .-+++.|+=|. ||.|. .+|.++..+++.+
T Consensus       222 ~~~~~~~~~vi~~~SfSK~-~g~~GlRiG~~v~~~~li~  259 (388)
T PRK07366        222 LQADPEKSVSIEFFTLSKS-YNMGGFRIGFAIGNAQLIQ  259 (388)
T ss_pred             hhCCCCcccEEEEeecccc-cCCcchhheehcCCHHHHH
Confidence            2221    23677899999 87673 4888887765544

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.60  E-value=5.8e-07  Score=87.87  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             HHHHHHHHHc----C---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          160 QARNKVLKHC----G---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       160 ~AR~~IA~~L----g---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      +.|+.|++++    |   ++++  +|++|+|+++++.+++..+...+|+.|+. ...|..  ....++..|+++..++. 
T Consensus        66 ~lr~~ia~~l~~~~~~~~~~~~--~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~~~~-  140 (364)
T PRK07865         66 ELREAIVGWLARRRGVTGLDPA--AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPT--YEVGARLAGATVVRADS-  140 (364)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcc--cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCccc--HHHHHHhcCCEEEecCC-
Confidence            4566777776    4   5565  79999999999999877765578998653 333331  22334456888877642 


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccCCCCC---
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLNLAL---  302 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDLs~---  302 (344)
                             .+++.+        .+++++.+...+|  |.+++.+.+.    .++++|+++++|-+..-.....-.+..   
T Consensus       141 -------~~~l~~--------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  205 (364)
T PRK07865        141 -------LTELGP--------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDP  205 (364)
T ss_pred             -------hhhCCc--------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccc
Confidence                   122211        1356777764556  9999985443    357899999999997731111000111   


Q ss_pred             ------CCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          303 ------HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       303 ------l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                            .+-.+++.|+-|. ||.|. .+|+++..++..+
T Consensus       206 ~~~~~~~~~~i~~~S~SK~-~~~~GlRiG~i~~~~~~~~  243 (364)
T PRK07865        206 RVCGGDHTGLLAVHSLSKQ-SNLAGYRAGFVAGDPALVA  243 (364)
T ss_pred             cccCCccceEEEEeechhc-cCCCceeeEEEecCHHHHH
Confidence                  1224899999999 87662 3888877655433

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=98.57  E-value=1.1e-06  Score=86.48  Aligned_cols=170  Identities=7%  Similarity=0.005  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC-eEE-EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGN-FYM-TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd-~iv-S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+.|+.||++++        ++++  +|++|+|+++++.+++.++- .+|+ .++ ..-.  .......++..|++++.
T Consensus        68 ~~~Lr~aia~~~~~~~~~~~~v~~~--~I~it~Ga~~al~~~~~~~~-~~g~~~Vlv~~P~--y~~~~~~~~~~g~~~~~  142 (374)
T PRK02610         68 HEALKQAIAEYVNESAAGSSQITPA--NISVGNGSDELIRSLLIATC-LGGEGSILVAEPT--FSMYGILAQTLGIPVVR  142 (374)
T ss_pred             hHHHHHHHHHHhCccccccCCCCHH--HEEEcCChHHHHHHHHHHHc-CCCCCeEEEcCCC--hHHHHHHHHHcCCEEEE
Confidence            4668899999988        6665  79999999999987665542 2454 443 2222  22234556667999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHH--hCCcEEEecccccCc-CCccC-CCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAH--RNSWHVLLDATALVV-GEDRL-NLA  301 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar--~~g~~vlvDAaQa~~-G~~~L-DLs  301 (344)
                      +|.+..+..++.++|+++++.. ...+++++.++.-+|  |+.++.+++..+.  .+++++++|-+-.-. +...+ .+.
T Consensus       143 ~~~~~~~~~~d~~~l~~~~~~~-~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~  221 (374)
T PRK02610        143 VGRDPETFEIDLAAAQSAIEQT-QNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELA  221 (374)
T ss_pred             ecCCcccCCCCHHHHHHHHHhh-cCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHh
Confidence            9876433468889998887530 001467776654455  9999997776543  248999999886521 11111 122


Q ss_pred             CCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      ...-=+++.|+=|. ||.|. .+|+++..+++.+
T Consensus       222 ~~~~~ivi~SfSK~-~g~~GlRiG~~v~~~~l~~  254 (374)
T PRK02610        222 QHPNWVILRTFSKA-FRLAAHRVGYAIGHPELIA  254 (374)
T ss_pred             cCCCEEEEEecchh-ccCcccceeeeecCHHHHH
Confidence            11112778999999 87673 4898887665543

>PTZ00377 alanine aminotransferase; Provisional

Probab=98.56  E-value=8.9e-07  Score=90.56  Aligned_cols=168  Identities=7%  Similarity=-0.084  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      -+.+.|+.||++++      ++++  +|++|+|+++|+.+++..+-..+||.|+. .-.++  .....++..|.+++.+|
T Consensus       116 G~~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~--~y~~~~~~~g~~~v~v~  191 (481)
T PTZ00377        116 GYPFVRKAVAAFIERRDGVPKDPS--DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYP--LYSAAITLLGGKQVPYY  191 (481)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChh--hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCch--hHHHHHHHcCCEEEEEE
Confidence            35668888888875      4555  79999999999999998874368998653 33333  12334455799999998


Q ss_pred             CCCCC-CccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCC---cc-
Q 035915          230 EAWLD-LRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGE---DR-  297 (344)
Q Consensus       230 ~~~~~-g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~---~~-  297 (344)
                      .+..+ ..++.++|++.+.+..+ ..+++++.+..-+|  |.+++.+.+   . .|++++++++.|-+-.-.-.   .+ 
T Consensus       192 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~  271 (481)
T PTZ00377        192 LDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPF  271 (481)
T ss_pred             eccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCc
Confidence            76432 35788999988864100 01466665554455  999996443   3 35889999999987542000   01 


Q ss_pred             CCC----CCCCCc-------EEEEccccCCCCCCC-ceEEEEE
Q 035915          298 LNL----ALHRPD-------FVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       298 LDL----s~l~~D-------Fvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      ..+    ..+..+       +++.|+=|.+++.|- .+|.+++
T Consensus       272 ~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~  314 (481)
T PTZ00377        272 ISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL  314 (481)
T ss_pred             ccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence            111    111111       566799996245342 4788876

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=98.53  E-value=3.8e-06  Score=85.65  Aligned_cols=167  Identities=10%  Similarity=0.064  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ..+.|+.||+|++        ++|+  +|++|+|+|+|+.+++.++ ..+||.++. .-.++. ....+..+.|++++.+
T Consensus        97 ~~~LR~aiA~~l~~~~~~~~~v~p~--~Ivit~G~t~al~~l~~~l-~~pGD~Vlv~~P~Y~~-f~~~~~~~~g~~vv~v  172 (447)
T PLN02607         97 LKSFRQAMASFMEQIRGGKARFDPD--RIVLTAGATAANELLTFIL-ADPGDALLVPTPYYPG-FDRDLRWRTGVKIVPI  172 (447)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCcCHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc-hHHHHHhcCCcEEEEE
Confidence            4568888888875        4555  7999999999999999887 468998652 222331 1122233468999888


Q ss_pred             eCCCCC-CccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCC---cc
Q 035915          229 PEAWLD-LRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGE---DR  297 (344)
Q Consensus       229 p~~~~~-g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~---~~  297 (344)
                      +.+..+ ..++.+.++++++.. ....+++++.++.-+|  |..+|-+.+.    .|+++++++++|-+-+. ..   .+
T Consensus       173 ~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~-~~f~~~~  251 (447)
T PLN02607        173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSG-SVFSASE  251 (447)
T ss_pred             eCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccc-cccCCCC
Confidence            876432 247888888887531 0112467777765556  9999976543    35789999999998663 21   11


Q ss_pred             -CCCC----CCC----Cc--EEEEccccCCCCCCC-ceEEEEEeC
Q 035915          298 -LNLA----LHR----PD--FVLCNLDNTQNAQPS-KITCLLIRK  330 (344)
Q Consensus       298 -LDLs----~l~----~D--Fvv~S~HK~l~G~P~-GiG~L~Vr~  330 (344)
                       ..+.    ..+    .+  .++.|+=|. ||.|- .+|+++..+
T Consensus       252 f~S~~s~~~~~~~~~~~~~v~vi~s~SK~-fg~~GlRvG~ivs~n  295 (447)
T PLN02607        252 FVSVAEIVEARGYKGVAERVHIVYSLSKD-LGLPGFRVGTIYSYN  295 (447)
T ss_pred             cccHHHHHhhcCCCCCcCcEEEEEcchhc-CCCCcceEEEEEEcC
Confidence             1110    111    22  567899998 88673 479999843

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=98.52  E-value=2.7e-06  Score=85.37  Aligned_cols=161  Identities=8%  Similarity=-0.026  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHcC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          159 IQARNKVLKHCG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       159 e~AR~~IA~~Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      .+.|+.++++++  ..+++ +|+.|+|+++|+.+++..+ ..+||.++. .-.+.  .....++..|++++.+|.+. ++
T Consensus       124 ~~lr~~ia~~~~~~~~~~~-~Iiit~G~~~al~~~~~~l-~~pgd~Vlv~~P~y~--~~~~~~~~~g~~~~~v~~~~-~g  198 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAF-EIDLTSGAIDAIERLLCAH-LLPGDSVAVEDPCFL--SSINMLRYAGFSASPVSVDA-EG  198 (431)
T ss_pred             HHHHHHHHHHHhhccCCcC-eEEEecCcHHHHHHHHHHh-CCCCCEEEEeCCCcH--HHHHHHHHcCCeEEeeccCC-CC
Confidence            447778888876  33322 7999999999999999987 368998642 22222  23444566799999999864 33


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc--cccccHH---HHH-HHHhC-CcEEEecccccCc---CCc-cCCCCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN--GTRYSMH---WIS-EAHRN-SWHVLLDATALVV---GED-RLNLALH  303 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN--G~i~Pl~---~Ia-~ar~~-g~~vlvDAaQa~~---G~~-~LDLs~l  303 (344)
                       ++.+.|++++++     +++++.+. .-+|  |+.++.+   .|. .|+++ +++++.|-+..-.   +.. .+.. ..
T Consensus       199 -~~~~~l~~~~~~-----~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~  271 (431)
T PRK15481        199 -MQPEKLERALAQ-----GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ-TT  271 (431)
T ss_pred             -CCHHHHHHHHhc-----CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC-CC
Confidence             788999888864     24554443 4445  9999996   443 35777 9999999765420   111 1111 11


Q ss_pred             CCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          304 RPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      +--+++.|+-|. || |. .+|+++..++..
T Consensus       272 ~~vi~~~SfSK~-~~-~GlRiG~~i~~~~~~  300 (431)
T PRK15481        272 QRWALIRSVSKA-LG-PDLRLAFVASDSATS  300 (431)
T ss_pred             CCEEEEeeeccc-cC-CCceeEEEeCCHHHH
Confidence            234889999999 88 82 478877765543

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=98.48  E-value=7.2e-06  Score=81.76  Aligned_cols=160  Identities=12%  Similarity=-0.008  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcC-CcC--HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTII-GEE--LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~-eH~--~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..+...++||.+=|--.    -+.|+++..|+-+++..+ .++||+|++.- =+.  .+......++.|++|+++..+  
T Consensus        63 T~~vlE~RiAaLEGG~a----a~a~aSG~AA~~~ai~~l-a~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~--  135 (426)
T COG2873          63 TTDVLEERIAALEGGVA----ALAVASGQAAITYAILNL-AGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD--  135 (426)
T ss_pred             hHHHHHHHHHHhhcchh----hhhhccchHHHHHHHHHh-ccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC--
Confidence            34556667887777542    255666667776666666 36899987432 233  444455557789999998754  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                          +.+.+++.+++     +|++|-+-...|  +.+.|++.|++ ||++|++++||-+=+- +.. +.--++++|.++-
T Consensus       136 ----d~~~~~~aI~~-----nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~at-pyl-~rP~~hGADIVvH  204 (426)
T COG2873         136 ----DPENFEAAIDE-----NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT-PYL-CRPIEHGADIVVH  204 (426)
T ss_pred             ----CHHHHHHHhCc-----ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCc-cee-cchhhcCCCEEEE
Confidence                46789999987     477777776777  99999999976 6999999999998776 432 2223479999999


Q ss_pred             ccccCCCCC-CCceEEEEEeCCCccc
Q 035915          311 NLDNTQNAQ-PSKITCLLIRKKSFDT  335 (344)
Q Consensus       311 S~HK~l~G~-P~GiG~L~Vr~~~~~~  335 (344)
                      |.-|| .|| -..+|..+|....++-
T Consensus       205 S~TK~-igGhGt~iGG~iVD~G~FDw  229 (426)
T COG2873         205 SATKY-IGGHGTAIGGVIVDGGKFDW  229 (426)
T ss_pred             eeccc-ccCCccccceEEEeCCcccc
Confidence            99999 665 4468999998877765

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.48  E-value=3.8e-07  Score=88.99  Aligned_cols=171  Identities=12%  Similarity=0.017  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCC---CCeEEEc-CCcC--HHHHHHHHHcCCcEEE----EE
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR---GNFYMTI-IGEE--LDYVREFASFKESKVI----LA  228 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~---Gd~ivS~-~eH~--~~~ir~la~~~G~kV~----~v  228 (344)
                      +-.-.-++..+||...  +|....+-|--++.+.-+| +++   ...|+-. -..+  .-++..-++-.|..+.    .+
T Consensus       114 e~il~l~~~iVGA~e~--EvavmNsLTvNlh~Ll~sF-yKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~i  190 (465)
T KOG3846|consen  114 EPILPLLAPIVGAQEN--EVAVMNSLTVNLHSLLISF-YKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQI  190 (465)
T ss_pred             hhhhhhhhhhccCCch--hhhhHhhhhhHHHHHHHHh-cCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEe
Confidence            3345567889999754  7998899999999888776 222   1223210 0011  1123333343454422    23


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccHHHHHHH-HhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSMHWISEA-HRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl~~Ia~a-r~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      ........+..+++...+..+.  ....+|+++.+.  +|..+++..|..+ +..|++|=.|-||++ |..|+-|.+|++
T Consensus       191 ePREGEetlRteDILd~IEkng--DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAv-gNVpL~LHdWgV  267 (465)
T KOG3846|consen  191 EPREGEETLRTEDILDTIEKNG--DEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAV-GNVPLQLHDWGV  267 (465)
T ss_pred             cccccccchhHHHHHHHHHhcC--CeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhh-cCCceEEeecCC
Confidence            2222123466777777776432  347899999887  5999999988887 668999999999999 999999999999


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ||.|.+.||.|..||.|+|.|+|..+....
T Consensus       268 DFACWCSYKYlnaGaGgIgGlFvHekh~~~  297 (465)
T KOG3846|consen  268 DFACWCSYKYLNAGAGGIGGLFVHEKHTKE  297 (465)
T ss_pred             ceEEEeeecccccCCCccceeeeehhhhcc
Confidence            999999999877789999999997765443

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=98.47  E-value=2.2e-06  Score=83.87  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc-
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLR-  236 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~-  236 (344)
                      .+.|+.||++++++++  +|++|+|+++++.+++..+.  +|+.++. .-.+  ......++..|++++.+|.+..++. 
T Consensus        60 ~~Lr~aia~~~~v~~~--~I~it~G~~~~i~~~~~~l~--~g~~vlv~~P~y--~~~~~~~~~~g~~~~~v~~~~~~~~~  133 (360)
T PRK07392         60 RELRLALAQHHQLPPE--WILPGNGAAELLTWAGRELA--QLRAVYLITPAF--GDYRRALRAFGATVKELPLPLDQPSP  133 (360)
T ss_pred             HHHHHHHHHHhCcChh--hEEECCCHHHHHHHHHHHhC--CCCeEEEECCCc--HHHHHHHHHcCCeEEEEecccccCCc
Confidence            4789999999999886  79999999999999988763  5676542 2222  2234455667999999998643321 


Q ss_pred             ---cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc---CCcc--CC-CCCCC
Q 035915          237 ---IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV---GEDR--LN-LALHR  304 (344)
Q Consensus       237 ---i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~---G~~~--LD-Ls~l~  304 (344)
                         .+.+++.+...      +++++.++.-+|  |..++-+++.+ ++++++ +++|-+..-.   +..+  +. +...+
T Consensus       134 ~~~~~~~~~~~~~~------~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~  206 (360)
T PRK07392        134 GLTLRLQTLPPQLT------PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYP  206 (360)
T ss_pred             ccccCHHHHHHhcc------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCC
Confidence               23444443221      356776664455  99999977755 577775 6669875420   1100  11 11111


Q ss_pred             CcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          305 PDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      -=+++.|+=|. ||.|. .+|+++..++..
T Consensus       207 ~vi~i~S~SK~-~~l~GlRiG~~v~~~~~~  235 (360)
T PRK07392        207 NLIILRSLTKF-YSLPGLRLGYAIAHPDRL  235 (360)
T ss_pred             CEEEEEechhh-hcCCchheeeeeCCHHHH
Confidence            12777899999 88663 489888766544

>PRK08636 aspartate aminotransferase; Provisional

Probab=98.45  E-value=6.4e-06  Score=81.97  Aligned_cols=169  Identities=10%  Similarity=0.079  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ...|+.||+++    |.  ++++ +|++|+|+++|+.+++..+ ..+||.|+. .-.+..  ....++..|++++.+|.+
T Consensus        74 ~~lR~~ia~~l~~~~~~~~~~~~-~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~  149 (403)
T PRK08636         74 YKLRLAICNWYKRKYNVDLDPET-EVVATMGSKEGYVHLVQAI-TNPGDVAIVPDPAYPI--HSQAFILAGGNVHKMPLE  149 (403)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC-eEEECCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc--hHHHHHhcCCEEEEEecc
Confidence            34677777766    64  4431 5999999999999999987 468998653 333331  233345579999998874


Q ss_pred             CC-CCccCHHH----HHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCcc
Q 035915          232 WL-DLRIKGSQ----LSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDR  297 (344)
Q Consensus       232 ~~-~g~i~~~~----L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~  297 (344)
                      .. +..++.+.    ++++++..  ..+++++.++.-+|  |..++.+.+.    .|++++++++.|-+-.-.   +...
T Consensus       150 ~~~~~~~d~~~l~~~l~~~~~~~--~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~  227 (403)
T PRK08636        150 YNEDFELDEDQFFENLEKALRES--SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKT  227 (403)
T ss_pred             ccccCccChhhhhhHHHHHHhhc--cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCC
Confidence            22 23466654    44444321  12466666664245  9999996443    358899999999875520   1111


Q ss_pred             CCCCCC----CCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          298 LNLALH----RPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       298 LDLs~l----~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      ..+..+    +.-+++.|+=|. ||.|. .+|+++..+++.+
T Consensus       228 ~~~~~~~~~~~~~i~~~S~SK~-~~~~GlRiG~iv~~~~li~  268 (403)
T PRK08636        228 PSILEVEGAKDVAVESYTLSKS-YNMAGWRVGFVVGNKKLVG  268 (403)
T ss_pred             CChhcCCCccccEEEEEecccc-cCCccceeeeeeCCHHHHH
Confidence            122222    123457899999 87673 4888877665443

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=98.45  E-value=4.9e-06  Score=82.18  Aligned_cols=163  Identities=12%  Similarity=0.009  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------C-CCCCeEE-EcCCcCHHHHHHHHHcCCc-
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------F-FRGNFYM-TIIGEELDYVREFASFKES-  223 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~-~~Gd~iv-S~~eH~~~~ir~la~~~G~-  223 (344)
                      ...++.+++.++++++.  +  .++|++++|+|+..++....        + ..++.++ ..-.+|-..+..++...+. 
T Consensus        72 ~~~~~~~~~~l~~~~~~--~--~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~  147 (400)
T PTZ00125         72 NDVLGLAEKYITDLFGY--D--KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPK  147 (400)
T ss_pred             CHHHHHHHHHHHhCCCC--C--EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcc
Confidence            44778999999999875  2  59999999998776655321        1 1234444 4444551111111111110 


Q ss_pred             ----------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEe
Q 035915          224 ----------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       224 ----------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                                .+..++.      .+.++|++.+..    .++++|.+..+.|  |.+.|    ++.|.+ |+++|+++++
T Consensus       148 ~~~~~~~~~~~~~~~~~------~d~~~le~~l~~----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~  217 (400)
T PTZ00125        148 CYNNFGPFVPGFELVDY------NDVEALEKLLQD----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIV  217 (400)
T ss_pred             hhccCCCCCCCceEeCC------CCHHHHHHHhCC----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence                      1111221      257888888852    2477777754443  99998    766654 6899999999


Q ss_pred             ccccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCccc
Q 035915          287 DATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFDT  335 (344)
Q Consensus       287 DAaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~~  335 (344)
                      |-+|. + |..    ..+.....+|++++|  |+ ++++- .+|++++++++.+.
T Consensus       218 Dev~~g~-g~~G~~~~~~~~~~~pd~~~~s--K~-l~~g~~~ig~v~~~~~~~~~  268 (400)
T PTZ00125        218 DEIQTGL-GRTGKLLAHDHEGVKPDIVLLG--KA-LSGGLYPISAVLANDDVMLV  268 (400)
T ss_pred             eccccCC-CccchhhHHHhcCCCCCEEEEc--cc-ccCCCcCcEEEEEcHHHHhh
Confidence            99986 4 532    233345678999988  99 66543 68999998876544

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=98.44  E-value=8.1e-06  Score=80.90  Aligned_cols=161  Identities=11%  Similarity=0.018  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------CCCC-CeE-EEcCCcC--HHHHHHHHH---
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------FFRG-NFY-MTIIGEE--LDYVREFAS---  219 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~~~G-d~i-vS~~eH~--~~~ir~la~---  219 (344)
                      .....+.-+++++++|.  +  .++|++++|+|+..++....        ..+| +.+ +....+|  ...+..+..   
T Consensus        82 ~~~~~~l~~~l~~~~~~--~--~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~  157 (401)
T PRK00854         82 NDQLAPLYEELAALTGS--H--KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPD  157 (401)
T ss_pred             CHHHHHHHHHHHhhCCC--C--EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcc
Confidence            34566777788888875  2  59999999999887665431        1233 344 4444444  211111100   


Q ss_pred             ------cCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEe
Q 035915          220 ------FKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       220 ------~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                            .....+..+|.      .+.++|++.+.+     ++++|.+....|  |.+.|    ++.|.+ |+++|+++++
T Consensus       158 ~~~~~~~~~~~~~~~~~------~d~~~le~~i~~-----~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~  226 (401)
T PRK00854        158 ARGGFGPFTPGFRVVPF------GDAEALEAAITP-----NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLIL  226 (401)
T ss_pred             ccccCCCCCCCeEEeCC------CCHHHHHHHhCC-----CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence                  00122333332      256788888864     467777776654  99998    776654 6899999999


Q ss_pred             ccccc-CcCCccC----CCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          287 DATAL-VVGEDRL----NLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa-~~G~~~L----DLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |.+|+ + |....    +.....+|+++++  |+ +++- --+|+++.+++..+
T Consensus       227 DEv~~g~-g~~g~~~~~~~~g~~~D~~~~~--K~-l~gg~~~ig~v~~~~~~~~  276 (401)
T PRK00854        227 DEIQTGL-GRTGKLLAEEHEGIEADVTLIG--KA-LSGGFYPVSAVLSNSEVLG  276 (401)
T ss_pred             echhhCC-CCCchHhHHhhcCCCCCEEEec--cc-ccCCccCeEEEEEcHHHHh
Confidence            99998 6 76542    2223568999997  98 5532 12788888876554

>PRK15029 arginine decarboxylase; Provisional

Probab=98.44  E-value=6.1e-06  Score=89.31  Aligned_cols=168  Identities=8%  Similarity=-0.019  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      ..+.+|.+..|+++|++.   ....|.|+|.|+..++.+. .++||.|+..-.-|...+..+ .-.|++.++++..+.  
T Consensus       205 G~I~eAq~~aA~~fgA~~---t~FlvNGST~gn~a~i~a~-~~~gd~Vlv~RN~HKSv~~al-~L~ga~Pvyl~P~~~~~  279 (755)
T PRK15029        205 GAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGL-ILTGAKPVYMVPSRNRY  279 (755)
T ss_pred             cHHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH-HHcCCeEEEeccccccc
Confidence            367899999999999963   4677789999988887765 478998765443231112222 235888888754331  


Q ss_pred             --CCccC-----HHHHHHHhhhcC--C---CCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCcc--
Q 035915          234 --DLRIK-----GSQLSQYFRRKC--K---HTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR--  297 (344)
Q Consensus       234 --~g~i~-----~~~L~~~l~~~~--~---~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~--  297 (344)
                        -+.++     .+++++.+....  +   ..+.+.+.++.-+- |+.++++.|.+ +|++|+.++||-||.+  |..  
T Consensus       280 Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGa--h~~F~  357 (755)
T PRK15029        280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYG--YARFN  357 (755)
T ss_pred             CCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccc--ccccC
Confidence              12344     788888885421  0   11223666664332 99999987765 6999999999999874  211  


Q ss_pred             --CC----C-----CCCCCc-EEEEccccCCCCCCCceEEEEEeCC
Q 035915          298 --LN----L-----ALHRPD-FVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       298 --LD----L-----s~l~~D-Fvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                        +.    +     ...++| +++-|.||+ +++-+....|-++.+
T Consensus       358 ~~~p~~sa~~~~~~~~~Gad~~vvqStHKt-L~alTQaS~LHv~~~  402 (755)
T PRK15029        358 PIYADHYAMRGEPGDHNGPTVFATHSTHKL-LNALSQASYIHVREG  402 (755)
T ss_pred             ccccccccccccccccCCCceEEEEchhhc-ccchhhhhhheeCCC
Confidence              11    1     115788 999999999 777878888888655

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=98.43  E-value=3.4e-06  Score=81.83  Aligned_cols=159  Identities=11%  Similarity=0.051  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      ..+.|+++|+++|.+++  .|+.|+|+++++.+++. + +.+|+.++..-.  .......++..|++++.+|.+..  ..
T Consensus        42 ~~~lr~~ia~~~~~~~~--~I~it~Gs~~~l~~~~~-~-~~~~~vv~~~P~--y~~y~~~~~~~G~~v~~vp~~~~--~~  113 (332)
T PRK06425         42 YTDIEDQIKIYTQGLKI--KVLIGPGLTHFIYRLLS-Y-INVGNIIIVEPN--FNEYKGYAFTHGIRISALPFNLI--NN  113 (332)
T ss_pred             HHHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHH-H-hCCCcEEEeCCC--hHHHHHHHHHcCCeEEEEeCCcc--cC
Confidence            46789999999999876  69999999999999886 3 356655443222  22344556778999999998642  23


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc-CCc--c-CCC-CCCCCc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV-GED--R-LNL-ALHRPD  306 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~-G~~--~-LDL-s~l~~D  306 (344)
                      +.+.+++        .+++++.++.-+|  |..++.+.+.    .++++++++++|-+=.-. ...  + ..+ ...+--
T Consensus       114 ~~~~l~~--------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~v  185 (332)
T PRK06425        114 NPEILNN--------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNV  185 (332)
T ss_pred             cHHHHhh--------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCE
Confidence            4443321        1356666654445  9999986543    347789999999874310 111  0 111 111223


Q ss_pred             EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .++.|+=|. ||.| |  +|.++..+++.+
T Consensus       186 i~~~SfSK~-~~l~-GlRiGy~v~~~~li~  213 (332)
T PRK06425        186 IIGRSLTKI-LGIP-SLRIGYIATDDYNMK  213 (332)
T ss_pred             EEEeecHHh-cCCc-hhhheeeecCHHHHH
Confidence            677899999 8867 6  799988766544

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.42  E-value=1.2e-07  Score=94.37  Aligned_cols=162  Identities=13%  Similarity=0.136  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHH---H--HHHHHHcCCcEEEEEeCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELD---Y--VREFASFKESKVILAPEA  231 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~---~--ir~la~~~G~kV~~vp~~  231 (344)
                      +.....+.++.+.||..    .+.+.|...|+.+++.++.  .|.+++..-+|-+.   .  +-+.-+..|++++.+-..
T Consensus        48 R~~~v~~ll~~ltgAea----A~VvNnnaAAv~L~l~~la--~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt  121 (367)
T PF03841_consen   48 RYAHVEELLCELTGAEA----ALVVNNNAAAVLLALNTLA--KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT  121 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccc----ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            34566777889999852    4666777788888887763  56665544444321   1  223334568887776543


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc----ccc--ccHHHH-HHHHhCCcEEEecccccCc--------CCc
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN----GTR--YSMHWI-SEAHRNSWHVLLDATALVV--------GED  296 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN----G~i--~Pl~~I-a~ar~~g~~vlvDAaQa~~--------G~~  296 (344)
                      .   +...+++++++++     +|.++-.-|.||    |..  .+++++ ..+|++++++++|+.....        +. 
T Consensus       122 N---~t~~~Dye~AI~e-----~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-  192 (367)
T PF03841_consen  122 N---RTHLSDYEKAITE-----NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-  192 (367)
T ss_dssp             -----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----
T ss_pred             c---ccccccccccccc-----cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-
Confidence            2   3456778888876     477777777777    433  456555 5579999999999988210        11 


Q ss_pred             cCCCC---CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          297 RLNLA---LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       297 ~LDLs---~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .-++.   +.++|.++||+.|. +|||. .|+++-|+++.+.
T Consensus       193 Ep~v~~~~~~GaDlV~fSGdKl-LGGPQ-aGiI~Gkk~lI~~  232 (367)
T PF03841_consen  193 EPTVQEYLAAGADLVTFSGDKL-LGGPQ-AGIIVGKKELIEK  232 (367)
T ss_dssp             ------CCCCT-SEEEEETTSS-SSS-S--EEEEEEHHHHHH
T ss_pred             ccHHHHHhhcCCCEEEEECCCc-CCCCC-eEEEEeCHHHHHH
Confidence            12333   36899999999999 99997 7999999987764

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=98.41  E-value=8e-06  Score=83.64  Aligned_cols=168  Identities=9%  Similarity=0.050  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEe
Q 035915          159 IQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       159 e~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.|+.||++++        ++++  +|+.|+|+++++.+++.++ ..+||.|+.. -.+.. ....+....|++++.+|
T Consensus        89 ~~LR~aiA~~l~~~~~~~~~v~~~--~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~-~~~~~~~~~g~~~v~v~  164 (468)
T PLN02450         89 PAFKNALAEFMSEIRGNKVTFDPN--KLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPG-FDRDLKWRTGVEIVPIH  164 (468)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcChH--HeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCc-hHHHHhhcCCcEEEEEe
Confidence            457888888875        4665  6999999999999999988 4689986532 22331 11222224699999998


Q ss_pred             CCC-CCCccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc--CCcc--
Q 035915          230 EAW-LDLRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV--GEDR--  297 (344)
Q Consensus       230 ~~~-~~g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~--G~~~--  297 (344)
                      .+. .+..++.++|++.+.+. ....+++++.++.-+|  |..+|.+.+.+    |+++++++++|=+-+..  ...+  
T Consensus       165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~  244 (468)
T PLN02450        165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV  244 (468)
T ss_pred             cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcc
Confidence            753 23456778888776531 0112456665554445  99999975543    47899999999876520  1111  


Q ss_pred             --CCCC---------CCCCcEEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          298 --LNLA---------LHRPDFVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       298 --LDLs---------~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                        +.+.         ...-=+++.|+=|. ||.|. .+|+++..++
T Consensus       245 s~l~~~~~~~~~~~~~~~~vi~l~S~SK~-~~l~GlRiG~li~~~~  289 (468)
T PLN02450        245 SVMEVLKDRKLENTDVSNRVHIVYSLSKD-LGLPGFRVGAIYSNDE  289 (468)
T ss_pred             cHHHHhhhcccccCCCCCcEEEEEecccc-CCCCCccEEEEEECCH
Confidence              1110         01112788999999 87563 4999988754

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.39  E-value=4.7e-06  Score=81.25  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHcC---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC-HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          158 EIQARNKVLKHCG---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE-LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       158 le~AR~~IA~~Lg---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~-~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ..+.|+.|+++++   ++++  +|++|+|+++++.++...+     +.++..  .+ .......++..|++++.+|.+. 
T Consensus        58 ~~~Lr~aia~~~~~~~~~~~--~i~it~Ga~~~i~~~~~~~-----d~v~v~--~P~y~~~~~~~~~~g~~~~~v~~~~-  127 (335)
T PRK14808         58 DEELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLMF-----DRSVFF--PPTYSCYRIFAKAVGAKFLEVPLTK-  127 (335)
T ss_pred             hHHHHHHHHHHhCCCCCCcc--eEEEcCCHHHHHHHHHHHh-----CcEEEC--CCCHHHHHHHHHHcCCeEEEecCCC-
Confidence            4668999999998   7766  7999999999999999887     333321  23 2334556677899999999864 


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCc-CCccCC-CCCCCCcEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVV-GEDRLN-LALHRPDFVL  309 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~-G~~~LD-Ls~l~~DFvv  309 (344)
                      ++.++...    +.      +++++.++.-+|  |..++.+.+.++-++++++++|-+-.-. +...++ +....-=+++
T Consensus       128 ~~~~~~~~----~~------~~~~i~i~nP~NPTG~~~s~~~l~~l~~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~  197 (335)
T PRK14808        128 DLRIPEVN----VG------EGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDLLKKYENLAVI  197 (335)
T ss_pred             cCCCChhH----cc------CCCEEEEeCCCCCCCCCcCHHHHHHHHhcCCEEEEECchhhhcCCchHHHHHhCCCEEEE
Confidence            34443321    22      246777776666  9999998877655689999999875420 211112 1122224788


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .|+=|. ||.| |  +|+++..+++.+
T Consensus       198 ~S~SK~-~~l~-GlRvG~~v~~~~~~~  222 (335)
T PRK14808        198 RTFSKA-FSLA-AQRIGYVVSSEKFID  222 (335)
T ss_pred             Eechhh-ccCc-ccceEEEEeCHHHHH
Confidence            999999 8856 5  799998765544

>PRK06855 aminotransferase; Validated

Probab=98.39  E-value=1.5e-05  Score=80.60  Aligned_cols=162  Identities=12%  Similarity=0.072  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.|++++    |  ++++  +|++|+|+++|+.+++. + ..+||.|+ ..-.++.. ........|++++.+|.
T Consensus        75 ~~~LReaia~~~~~~~g~~~~~~--~I~it~G~~~al~~~~~-l-~~~Gd~Vlv~~P~Y~~~-~~~~~~~~g~~~v~v~~  149 (433)
T PRK06855         75 VLETREFLAELNNKRGGAQITPD--DIIFFNGLGDAIAKIYG-L-LRREARVIGPSPAYSTH-SSAEAAHAGYPPVTYRL  149 (433)
T ss_pred             CHHHHHHHHHHHHhccCCCCCHh--HEEEcCcHHHHHHHHHH-h-cCCCCeEEEeCCCCchH-HHHHHHhcCCeEEEEec
Confidence            456778888876    3  4555  79999999999998874 4 56899864 33333321 11111234788888887


Q ss_pred             CCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCC
Q 035915          231 AWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       231 ~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +..+ ..++.++|++.++..   .+++++.++.-+|  |..++.+.+.    .|++++++++.|-+..-.   +.....+
T Consensus       150 ~~~~~~~~d~~~l~~~~~~~---~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl  226 (433)
T PRK06855        150 DPENNWYPDLDDLENKVKYN---PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPL  226 (433)
T ss_pred             ccccCCCCCHHHHHHHHhcC---CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCH
Confidence            5322 247889999888531   1345555554445  9999996554    247899999999986531   2111222


Q ss_pred             CCC---CCcEEEEccccCCCCCCC-ceEEEEE
Q 035915          301 ALH---RPDFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       301 s~l---~~DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      ..+   ..-+++.|+=|. |+.|. .+|.+++
T Consensus       227 ~~~~~~~~~I~~~S~SK~-~~~pGlRiG~ii~  257 (433)
T PRK06855        227 SEVIGDVPGIALKGISKE-LPWPGSRCGWIEV  257 (433)
T ss_pred             HHHcCcCCeEEEecCccc-cCCCcceEEEEEE
Confidence            211   123888999999 87673 4898887

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=98.35  E-value=1e-05  Score=82.88  Aligned_cols=152  Identities=15%  Similarity=0.118  Sum_probs=103.4

Q ss_pred             CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhc
Q 035915          171 LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRK  249 (344)
Q Consensus       171 a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~  249 (344)
                      |+++  +|++|+|+++||++++..+ ..+||.|+. .-.|+  .+....+..|++++.+|.|. +| ++.+.|++.+...
T Consensus       153 ~~~~--~IiiT~G~q~al~l~~~~l-~~pGd~v~vE~PtY~--~~~~~~~~~g~~~~~vp~d~-~G-~~~e~le~~~~~~  225 (459)
T COG1167         153 CEPE--QIVITSGAQQALDLLLRLL-LDPGDTVLVEDPTYP--GALQALEALGARVIPVPVDE-DG-IDPEALEEALAQW  225 (459)
T ss_pred             cCcC--eEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCcH--HHHHHHHHcCCcEEecCCCC-CC-CCHHHHHHHHhhc
Confidence            4554  7999999999999999987 458998653 22322  24455566799999999985 34 7999999988642


Q ss_pred             CCCCCeeEEEEeCccc--cccccHHH----HHHHHhCCcEEEecccccCc--C-CccCCCCCC---CCcEEEEccccCCC
Q 035915          250 CKHTPKGLFSYPADIN--GTRYSMHW----ISEAHRNSWHVLLDATALVV--G-EDRLNLALH---RPDFVLCNLDNTQN  317 (344)
Q Consensus       250 ~~~~~t~LVa~~avSN--G~i~Pl~~----Ia~ar~~g~~vlvDAaQa~~--G-~~~LDLs~l---~~DFvv~S~HK~l~  317 (344)
                         ...-+++.|...|  |..++++.    +..|++++++++=|-.-+-.  . .-+.++..+   +==+++.|+=|. +
T Consensus       226 ---~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l  301 (459)
T COG1167         226 ---KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-L  301 (459)
T ss_pred             ---CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-c
Confidence               1234555554446  99999952    23468899999988754431  1 111123322   334999999999 5


Q ss_pred             CCCC-ceEEEEEeCCCcc
Q 035915          318 AQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       318 G~P~-GiG~L~Vr~~~~~  334 (344)
                      . |. .+|.+++.+++.+
T Consensus       302 ~-PglRlG~vv~p~~~~~  318 (459)
T COG1167         302 A-PGLRLGYVVAPPELIE  318 (459)
T ss_pred             c-cccceeeeeCCHHHHH
Confidence            5 64 6888888766544

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=98.35  E-value=7.7e-06  Score=80.96  Aligned_cols=160  Identities=14%  Similarity=0.037  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHcCCC-CCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEE-EcCCcC--HHHHHHHHHc---------CCc
Q 035915          158 EIQARNKVLKHCGLP-DDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYM-TIIGEE--LDYVREFASF---------KES  223 (344)
Q Consensus       158 le~AR~~IA~~Lga~-p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~iv-S~~eH~--~~~ir~la~~---------~G~  223 (344)
                      ..+..+.++++++.+ ++  .|+||+|+++|+..++..... .| +.++ ..-.+|  ......+...         .+.
T Consensus        87 ~~~la~~l~~~~~~~~~~--~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  163 (398)
T PRK03244         87 QIALAERLVELLGAPEGG--RVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPG  163 (398)
T ss_pred             HHHHHHHHHHhCCCCCCC--EEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCC
Confidence            356777888888854 23  799999999999988764322 34 3344 323444  1111111100         011


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEecccccCcCCc
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLDATALVVGED  296 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~  296 (344)
                      .+..+|.      .+.+.|++.+.+     ++++|.+....|  |.+.|    ++.|.+ |+++|+++++|-+|+-.|..
T Consensus       164 ~~~~~~~------~d~~~l~~~~~~-----~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~  232 (398)
T PRK03244        164 GVEHVPY------GDVDALAAAVDD-----DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRT  232 (398)
T ss_pred             CceEeCC------CCHHHHHHhhcC-----CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccc
Confidence            2223332      146778877743     356666554443  99988    666654 68999999999999521321


Q ss_pred             ----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          297 ----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       297 ----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                          .+......+|++++|  |+ +|+.-.+|+++++++..+
T Consensus       233 g~~~~~~~~~~~pDi~t~s--K~-l~~G~~ig~~~~~~~~~~  271 (398)
T PRK03244        233 GAWFAHQHDGVTPDVVTLA--KG-LGGGLPIGACLAFGPAAD  271 (398)
T ss_pred             chHHhhhhhCCCCCEEEEc--hh-hhCCcccEEEEEcHHHHh
Confidence                123345679988775  99 774345899999876544

>PRK07505 hypothetical protein; Provisional

Probab=98.33  E-value=3e-05  Score=77.17  Aligned_cols=157  Identities=10%  Similarity=0.038  Sum_probs=90.7

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---CCCCCC--eEEEc-CCcCHHH-HHHHHHcCCcE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---PFFRGN--FYMTI-IGEELDY-VREFASFKESK  224 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd--~ivS~-~eH~~~~-ir~la~~~G~k  224 (344)
                      .......++.++++++++|.  +  .++|++|+ +|+..++...   -+.+|+  .++.. ..|.... ...+.+ .+.+
T Consensus        87 ~~~~~~~~~l~~~la~~~~~--~--~~~~~sG~-~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~  160 (402)
T PRK07505         87 RVRSQILKDLEEALSELFGA--S--VLTFTSCS-AAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETE  160 (402)
T ss_pred             hhhhHHHHHHHHHHHHHhCC--C--EEEECChH-HHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCe
Confidence            34566779999999999997  3  46677654 4544333211   122233  33333 3344221 122222 3567


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Ccc-ccccccHHHHHH-HHhCCcEEEecccccCcCCcc----
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADI-NGTRYSMHWISE-AHRNSWHVLLDATALVVGEDR----  297 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~----  297 (344)
                      ++.+|..      +.++|++.++++     ++++.+. -++ +|.+.|++.|.+ ++++|+++++|.+|+..+..+    
T Consensus       161 v~~~~~~------d~~~l~~~~~~~-----~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~  229 (402)
T PRK07505        161 VETIDHN------DLDALEDICKTN-----KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEG  229 (402)
T ss_pred             EEEeCCC------CHHHHHHHHhcC-----CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCc
Confidence            7777753      467788877542     2334333 222 499999988865 688999999999996411111    


Q ss_pred             CC---CC--CCCCcEEEEccccCCCCCCCceEEEEE
Q 035915          298 LN---LA--LHRPDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       298 LD---Ls--~l~~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      ..   +.  ..+..+++.|+=|. ||.+ | |++.+
T Consensus       230 ~~~~~~~~~~~d~~i~~~s~sK~-~~~~-G-g~~~~  262 (402)
T PRK07505        230 YVRSELDYRLNERTIIAASLGKA-FGAS-G-GVIML  262 (402)
T ss_pred             hHHHHcCCCCCCCeEEEEechhh-hhcc-C-eEEEe
Confidence            11   11  11234667789998 8844 4 66554

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.31  E-value=1.1e-05  Score=89.00  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCC--CCCeE-EEcCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF--RGNFY-MTIIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~--~Gd~i-vS~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+-+-+..|+++.|.+..  +.-+-.++|++.+.++.++...  ++++| ++...|+  ...++..++..|++|+.++. 
T Consensus       110 ~l~e~Qt~i~eLtGm~~a--NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~-  186 (939)
T TIGR00461       110 ALLNFQTVVSDLTGLPVA--NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC-  186 (939)
T ss_pred             HHHHHHHHHHHHHCCChh--hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH-
Confidence            567889999999999755  5678889999887766665432  33554 6777788  34566667778999988743 


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                              ++|++.+       ++  +++..++ |  |.+-+++.|. .+|++|+++++++-+.. .....+-.++++|+
T Consensus       187 --------~~l~~~~-------~~--~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~a-l~ll~~Pge~GaDi  248 (939)
T TIGR00461       187 --------SDIKKAV-------DV--FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMA-LTLLTPPGHYGADI  248 (939)
T ss_pred             --------HHHhhcC-------CE--EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHH-hCCcCCHHHcCCcE
Confidence                    2343332       13  3333333 4  9999997774 57999999999888888 66777778899999


Q ss_pred             EEEccccC----CCCCCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNT----QNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~----l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++.++++|    -|||| +.|++.+|++...
T Consensus       249 ~vg~~q~fg~p~g~GGP-~aG~~a~~~~l~r  278 (939)
T TIGR00461       249 VLGSSQRFGVPMGYGGP-HAAFFAVKDEYNR  278 (939)
T ss_pred             EeeCCCccCCCCCCCCC-ceeeeeecHhhHh
Confidence            99988887    26778 7999999986543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=98.31  E-value=2.1e-06  Score=83.47  Aligned_cols=167  Identities=15%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHH--HHHHcCCcEEEEEeCCCCCCccC
Q 035915          161 ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVR--EFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       161 AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir--~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      ..+++|+++|-..    -.|++++|-++.+.+..---++|.+++.....|...|.  .++.-.|+.++.+.... |+.++
T Consensus        61 LE~~vA~l~GKEA----gLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~-dgtm~  135 (384)
T KOG1368|consen   61 LEQRVAELFGKEA----GLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNEN-DGTMD  135 (384)
T ss_pred             HHHHHHHHhCccc----eeeecccccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeCC-CCeee
Confidence            4456899999753    48999999997766554323578886543332211111  11222477777765443 68899


Q ss_pred             HHHHHHHhhhc---CCCCCeeEEEEeCcc-c--cccccHHHHHH----HHhCCcEEEecccccCcCC--ccCCCCC--CC
Q 035915          239 GSQLSQYFRRK---CKHTPKGLFSYPADI-N--GTRYSMHWISE----AHRNSWHVLLDATALVVGE--DRLNLAL--HR  304 (344)
Q Consensus       239 ~~~L~~~l~~~---~~~~~t~LVa~~avS-N--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~--~~LDLs~--l~  304 (344)
                      .++|++.++.+   +..+.|+|+++--.. |  |..+|++|+.+    ++++|+.+|+|+|-.+-..  ..+.+++  -.
T Consensus       136 ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~  215 (384)
T KOG1368|consen  136 LEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSA  215 (384)
T ss_pred             HHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHh
Confidence            99999999842   334679999997433 3  69999998864    4789999999998654111  1233333  24


Q ss_pred             CcEEEEccccCCCCCCCceEEEEE-eCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLI-RKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~V-r~~~~~~  335 (344)
                      +|-+.+++-|- +|+|  +|-.+| .+++.+.
T Consensus       216 fDSVsiCLSKg-lgAP--VGSViVG~k~FI~k  244 (384)
T KOG1368|consen  216 FDSVSICLSKG-LGAP--VGSVIVGSKDFIDK  244 (384)
T ss_pred             hhhhhhhhhcc-CCCC--cccEEEccHHHHHH
Confidence            89999999999 9999  554555 4454444

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=98.30  E-value=3.7e-05  Score=77.62  Aligned_cols=183  Identities=10%  Similarity=0.045  Sum_probs=119.5

Q ss_pred             cccchHHHHHHhhccCCCCh-hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCc
Q 035915          131 RTQLEPSRLLDILTKKSSFP-GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGE  209 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~-g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH  209 (344)
                      .++++.+.+...-.+-+.+. =.-......+.-+++|+|+|.+.   -++|+||-+.-+- ++.++. +++|.++++--.
T Consensus        58 ~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~---al~f~SGy~AN~~-~i~~l~-~~~dli~~D~ln  132 (388)
T COG0156          58 LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA---ALLFSSGFVANLG-LLSALL-KKGDLIFSDELN  132 (388)
T ss_pred             HHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc---EEEEcccchhHHH-HHHHhc-CCCcEEEEechh
Confidence            56667777776533332110 01122355778889999999963   5999999875443 445553 468888887655


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCC-CeeEEEEeCc-cc-cccccHHHHHH-HHhCCcEEE
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHT-PKGLFSYPAD-IN-GTRYSMHWISE-AHRNSWHVL  285 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~-~t~LVa~~av-SN-G~i~Pl~~Ia~-ar~~g~~vl  285 (344)
                      |.. +..-++-.+++++...-+      |.+.|++.+.+..... +.++|++..+ |. |.+-||..|.. +++++++++
T Consensus       133 HAS-iidG~rls~a~~~~f~Hn------D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~  205 (388)
T COG0156         133 HAS-IIDGIRLSRAEVRRFKHN------DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLY  205 (388)
T ss_pred             hhh-HHHHHHhCCCcEEEecCC------CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEE
Confidence            522 222233456777766532      4578888886521111 3567777665 44 99999977755 588999999


Q ss_pred             ecccccCcCCccCC---------CCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          286 LDATALVVGEDRLN---------LALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       286 vDAaQa~~G~~~LD---------Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ||=||++ |..-=+         +..-.+|+++.++-|- ||   +.|+.+.-.
T Consensus       206 VDEAHa~-Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKA-lG---s~Gg~v~g~  254 (388)
T COG0156         206 VDEAHAV-GVLGPNGRGLAEHFGLEPEEVDIIVGTLGKA-LG---SSGGYIAGS  254 (388)
T ss_pred             EEccccc-cccCCCCccHHHHhCCCCccceEEEEEchhh-hc---ccCceeeCc
Confidence            9999999 865422         2234569999999999 88   677766543

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=98.29  E-value=1.5e-05  Score=79.40  Aligned_cols=160  Identities=9%  Similarity=0.009  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHc---CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCc----------
Q 035915          158 EIQARNKVLKHC---GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKES----------  223 (344)
Q Consensus       158 le~AR~~IA~~L---ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~----------  223 (344)
                      ....|+.||+++   +++++  +|++|+|+++++.++.. + +.+|+.|+ ..-.+.  .....++..|+          
T Consensus        77 ~~~lr~aia~~~~~~~~~~d--~I~it~Ga~~al~~l~~-l-~~~gd~Vlv~~P~y~--~~~~~~~~~g~~~~~~~~~~~  150 (402)
T TIGR03542        77 YPFLREAIAENDYRGRIDPE--EIFISDGAKCDVFRLQS-L-FGSDNTVAVQDPVYP--AYVDSNVMAGRAGVLDDDGRY  150 (402)
T ss_pred             CHHHHHHHHHHHHhcCCCHH--HEEECCCcHHHHHHHHH-h-cCCCCEEEEeCCCCc--chHHHHHHcCCcccccccccc
Confidence            456888888876   67776  79999999999998754 3 35788754 223333  12334455677          


Q ss_pred             -EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---H-HHHHhCCcEEEecccccCc---
Q 035915          224 -KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---I-SEAHRNSWHVLLDATALVV---  293 (344)
Q Consensus       224 -kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---I-a~ar~~g~~vlvDAaQa~~---  293 (344)
                       +++.+|.+..++ ...+ +.+   .    .++++|.++.-+|  |+.++.+.   | ..|+++++++++|-+..-.   
T Consensus       151 ~~~~~v~~~~~~~-~~~~-~~~---~----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~  221 (402)
T TIGR03542       151 SKITYLPCTKENN-FIPD-LPE---E----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISD  221 (402)
T ss_pred             ceEEEeecchhhC-CCCC-ccc---c----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccC
Confidence             888888753211 2221 111   0    1356777664445  99999643   3 2357899999999987631   


Q ss_pred             CCccCCCCCCC----CcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          294 GEDRLNLALHR----PDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       294 G~~~LDLs~l~----~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      +..+..+..+.    .-+++.|+=|. ||.|. .+|++++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~vi~~~SfSK~-~g~pGlRiG~~i~~~~l~  265 (402)
T TIGR03542       222 PSLPHSIFEIPGAKECAIEFRSFSKT-AGFTGVRLGWTVVPKELT  265 (402)
T ss_pred             CCCCcchhhCCCCcccEEEEecCccc-cCCCCcceEEEEecHHHh
Confidence            11122222221    23667899999 88662 489998876543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=98.24  E-value=2.3e-05  Score=76.47  Aligned_cols=167  Identities=10%  Similarity=0.034  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C-C----CCCeEEE-cCCcC--HHHHHHHHHcCCcEE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F-F----RGNFYMT-IIGEE--LDYVREFASFKESKV  225 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~-~----~Gd~ivS-~~eH~--~~~ir~la~~~G~kV  225 (344)
                      .....+..+++++++|.+    .++|+.|+++|+.+++.... + .    +|+.+++ .-.+|  ...............
T Consensus        68 ~~~~~~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~  143 (379)
T TIGR00707        68 TEPQEELAEKLVEHSGAD----RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK  143 (379)
T ss_pred             CHHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence            345678899999999873    59999999999887766431 1 1    2577653 32333  111111100000000


Q ss_pred             EEEeCCCCCCcc----CHHHHHHHhhhcCCCCCeeEEEEeCccc--ccc-cc---HHHHH-HHHhCCcEEEeccccc-Cc
Q 035915          226 ILAPEAWLDLRI----KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR-YS---MHWIS-EAHRNSWHVLLDATAL-VV  293 (344)
Q Consensus       226 ~~vp~~~~~g~i----~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i-~P---l~~Ia-~ar~~g~~vlvDAaQa-~~  293 (344)
                      ...+... +-..    +.+.|++.+.+     ++++|.+...+|  |.. .+   ++.|. .++++|+++++|.++. + 
T Consensus       144 ~~~~~~~-~~~~~~~~d~~~l~~~~~~-----~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~-  216 (379)
T TIGR00707       144 GFEPLVP-GFSYAPYNDIESLKKAIDD-----ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGI-  216 (379)
T ss_pred             cCCCCCC-CceeeCCCCHHHHHHHhhh-----CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC-
Confidence            0111110 0011    57788887764     366777765554  554 34   44443 3588999999999997 4 


Q ss_pred             CCc----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          294 GED----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       294 G~~----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |..    +++.....+|++++  .|. +++.-.+|+++.+++..+.
T Consensus       217 ~~~g~~~~~~~~~~~~d~~t~--sK~-~~~G~riG~~~~~~~~~~~  259 (379)
T TIGR00707       217 GRTGKFFAYEHYGIEPDIITL--AKG-LGGGVPIGATLAKEEVAEA  259 (379)
T ss_pred             CccchhhhHHhcCCCCCEEEE--ccc-ccCCcccEEEEEcHHHHhh
Confidence            432    12233456787765  699 8733459999988765443

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=98.23  E-value=4.5e-05  Score=75.68  Aligned_cols=163  Identities=12%  Similarity=-0.024  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeE--EEeCCHHHHHHHHHhhCC-CCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCG------LPDDEYLV--LFTPNYRDAMMLVGESYP-FFRGNFYMT-IIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~V--VFTsnaTeAlnlva~sl~-~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+.|+.|++++.      ++++  +|  +.|+|+++|+.+++..+. ..+||.++. .-.++  .....++..|++++.
T Consensus        71 ~~~lR~aia~~~~~~~~~~~~~~--~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~--~~~~~~~~~g~~~v~  146 (396)
T PRK09257         71 LAAYRQAVQELLFGADSPALAAG--RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWP--NHRAIFEAAGLEVKT  146 (396)
T ss_pred             CHHHHHHHHHHhcCCCCcccccC--eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcc--cHHHHHHHcCCcEEE
Confidence            4557777887752      2344  45  999999999999987664 368998642 22222  123344557999999


Q ss_pred             EeC-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc----
Q 035915          228 APE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED----  296 (344)
Q Consensus       228 vp~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~----  296 (344)
                      +|. +.++..++.+.+++.+...  ..++.++.++.-+|  |..++.+...    .|++++++++.|-+=.-....    
T Consensus       147 v~~~~~~~~~~d~~~l~~~~~~~--~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~  224 (396)
T PRK09257        147 YPYYDAATKGLDFDAMLADLSQA--PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEED  224 (396)
T ss_pred             EeccccccCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHH
Confidence            986 2223457889998887531  11355666665556  9999996543    357899999998763210100    


Q ss_pred             cCC---CCCCC-CcEEEEccccCCCCCCCc--eEEEEE
Q 035915          297 RLN---LALHR-PDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       297 ~LD---Ls~l~-~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                      ...   +.... --+++.|+=|. |+ |.|  +|++++
T Consensus       225 ~~~~~~~~~~~~~vi~i~SfSK~-~~-~~GlRiG~~~~  260 (396)
T PRK09257        225 AYGLRAFAAAGLELLVASSFSKN-FG-LYGERVGALSV  260 (396)
T ss_pred             HHHHHHHHhcCCcEEEEEEcCCc-Cc-cccccceeEEE
Confidence            000   11111 23788999999 88 544  788874

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.22  E-value=3.8e-05  Score=74.54  Aligned_cols=150  Identities=11%  Similarity=0.007  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      ...|+.|++++|.  +  +|++|+|+++++.++..   ..+||.++. .-.  .......++..|++++.+|.+      
T Consensus        52 ~~Lr~~ia~~~~~--~--~I~it~Gs~~al~~~~~---~~~gd~v~v~~P~--y~~~~~~~~~~g~~~~~v~~~------  116 (330)
T PRK05664         52 DGLEAAARAYYGA--P--QLLPVAGSQAAIQALPR---LRAPGRVGVLSPC--YAEHAHAWRRAGHQVRELDEA------  116 (330)
T ss_pred             HHHHHHHHHHhCC--C--CEEECcCHHHHHHHHHH---ccCCCEEEEcCCC--hHHHHHHHHHcCCeEEEechh------
Confidence            4569999999986  3  69999999999998864   357888653 222  223455566779999888763      


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCccCCCCCCC--C-cEE
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDRLNLALHR--P-DFV  308 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~-DFv  308 (344)
                         ++.+.+.      +++++.+..-+|  |.+++.+.+.+    ++++++++++|=+-.- ......+..+.  . =++
T Consensus       117 ---~~~~~~~------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~-~~~~~s~~~~~~~~~vi~  186 (330)
T PRK05664        117 ---EVEAALD------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMD-NTPQHSLAACAHRPGLIV  186 (330)
T ss_pred             ---hHhhhhc------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCccc-CCCcccccccccCCCEEE
Confidence               2333342      234444332345  99999865543    4678999999987643 22111222221  1 288


Q ss_pred             EEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +.|+-|. ||.|. .+|.++..++..+
T Consensus       187 ~~SfSK~-~gl~GlRiG~~v~~~~l~~  212 (330)
T PRK05664        187 LRSFGKF-FGLAGARLGFVLAEPALLR  212 (330)
T ss_pred             Eeecccc-ccCCCcceEEEEeCHHHHH
Confidence            9999999 88672 3899988765544

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.21  E-value=8.5e-06  Score=81.64  Aligned_cols=168  Identities=14%  Similarity=-0.015  Sum_probs=110.9

Q ss_pred             ChhhhhhH-HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HHHHHHHHHcCCc
Q 035915          149 FPGSFISI-PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LDYVREFASFKES  223 (344)
Q Consensus       149 ~~g~~as~-~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~~ir~la~~~G~  223 (344)
                      |.|-+.-+ ..+-|.++..++||++-.  + |=--+++.|+..|..++ +++||.++. .+.|.   ....+.-...+=+
T Consensus        64 YgGce~VD~vE~laierak~LFga~~a--n-VQPhSGs~AN~av~~Al-l~pGDtimgm~l~~GGHltHg~~v~~sG~~~  139 (413)
T COG0112          64 YGGCEYVDEVEELAIERAKKLFGAEYA--N-VQPHSGSQANQAVYLAL-LQPGDTIMGLDLSHGGHLTHGSPVNFSGKLF  139 (413)
T ss_pred             cCCCeeHHHHHHHHHHHHHHHhCCCcc--c-cCCCCchHHHHHHHHHH-cCCCCeEecccCCCCCcccCCCCCCccceeE
Confidence            34444334 447889999999999632  2 22346677777777776 578999864 33332   1111110010114


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCcc----
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR----  297 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~----  297 (344)
                      ++..-+++.+++.||.+++++.....    +++|+.+- .|. -...|++.+++ +.+.|+++++|+||.+ |.+-    
T Consensus       140 ~~v~Y~vd~et~~IDyD~~~k~a~e~----kPK~ii~G-~SaY~r~id~~~~reIad~VGA~L~~DmAHia-GLVA~G~~  213 (413)
T COG0112         140 NVVSYGVDPETGLIDYDEVEKLAKEV----KPKLIIAG-GSAYSRPIDFKRFREIADEVGAYLMVDMAHVA-GLIAGGVH  213 (413)
T ss_pred             EeEecccccccCccCHHHHHHHHHHh----CCCEEEEC-ccccccccCHHHHHHHHHHhCceEEehHHHHH-HHHhcccC
Confidence            45556777667899999999887653    45676665 444 78889988876 5889999999999998 7642    


Q ss_pred             -CCCCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          298 -LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       298 -LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                       =.+.  .+|+++.|-||. |.||+| |+++.++
T Consensus       214 p~P~~--~AdvVTtTTHKT-lrGPrG-G~Il~~~  243 (413)
T COG0112         214 PNPLP--HADVVTTTTHKT-LRGPRG-GIILTND  243 (413)
T ss_pred             CCCCC--ccceEeCCcccC-CCCCCc-eEEEecc
Confidence             1222  289999999999 666975 5555554

>PRK08354 putative aminotransferase; Provisional

Probab=98.21  E-value=5.9e-05  Score=72.51  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      ...|+.++++.|.     +|++|+|+++++.+++..+  .+|+.++. .-.+.  .....++..|++++.++       +
T Consensus        43 ~~l~~~ia~~~~~-----~I~vt~G~~~al~~~~~~~--~~gd~vlv~~P~y~--~~~~~~~~~g~~~~~~~-------~  106 (311)
T PRK08354         43 EWLEEEFSKLFGE-----PIVITAGITEALYLIGILA--LRDRKVIIPRHTYG--EYERVARFFAARIIKGP-------N  106 (311)
T ss_pred             HHHHHHHHHHHCC-----CEEECCCHHHHHHHHHHhh--CCCCeEEEeCCCcH--HHHHHHHHcCCEEeecC-------C
Confidence            4568899999983     5999999999999887544  37888653 22222  23445566788886654       3


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                      +.+.|++.+++      ++++.+..-+|  |..++.+.+.+    ++++|+++++|-+-.-.....-... ..--+++-|
T Consensus       107 d~~~l~~~~~~------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~-~~~vi~~~S  179 (311)
T PRK08354        107 DPEKLEELVER------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPE-GENIIKLRT  179 (311)
T ss_pred             CHHHHHHhhcC------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccC-CCcEEEEec
Confidence            45677766642      23444433345  99999865543    4678999999998743010110111 223488899


Q ss_pred             cccCCCCCCCc--eEEEEE
Q 035915          312 LDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       312 ~HK~l~G~P~G--iG~L~V  328 (344)
                      +=|. ||.| |  +|.++.
T Consensus       180 ~SK~-~~l~-GlRiG~~v~  196 (311)
T PRK08354        180 FTKS-YGLP-GIRVGYVKG  196 (311)
T ss_pred             cHhh-cCCc-cceeeeeee
Confidence            9999 8867 5  788775

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.19  E-value=1.9e-05  Score=80.81  Aligned_cols=182  Identities=10%  Similarity=0.012  Sum_probs=110.2

Q ss_pred             HHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcC-----CcC--HH
Q 035915          140 LDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTII-----GEE--LD  212 (344)
Q Consensus       140 ~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~-----eH~--~~  212 (344)
                      ..++.|...|.+...   +.+-.+.++++||-.    .++||..++.+-+++...+.-.+|+++....     -|+  ..
T Consensus        61 aAM~~GDD~Y~gdpS---v~~Lee~vael~G~E----~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fe  133 (467)
T TIGR02617        61 AAMMRGDEAYSGSRS---YYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD  133 (467)
T ss_pred             HHHHcCCcccccCch---HHHHHHHHHHHhCCc----eEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEe
Confidence            333446655555443   344566788999974    3899988898888877665433566654222     233  11


Q ss_pred             HHHHHHHcCCcEEEEEeCC---------CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHHHH----
Q 035915          213 YVREFASFKESKVILAPEA---------WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWISE----  276 (344)
Q Consensus       213 ~ir~la~~~G~kV~~vp~~---------~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~Ia~----  276 (344)
                      ..+..+.-.|+.+..++.+         ..+|.++.++|++++++.. ..+...+..+..+|   |..+|++.+.+    
T Consensus       134 tt~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g-~~~i~~v~~tlt~N~~GGqpvslenlr~V~~l  212 (467)
T TIGR02617       134 TTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITCNSAGGQPVSLANLKAVYEI  212 (467)
T ss_pred             cchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcC-CCCceeeeeeEEEecCCCEEeCHHHHHHHHHH
Confidence            2233344468777665321         1258899999999997521 01122222222334   99999987754    


Q ss_pred             HHhCCcEEEecccccCc----------CCccCCCCC------CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          277 AHRNSWHVLLDATALVV----------GEDRLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~----------G~~~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      |+++|+.+|+|||=.+-          +....++++      -.+|.+++|+=|- +|.|.| |+|..+++
T Consensus       213 a~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKg-lgApvG-g~Lag~d~  281 (467)
T TIGR02617       213 AKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKD-AMVPMG-GLLCFKDD  281 (467)
T ss_pred             HHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCC-CCCccc-ceEEecch
Confidence            47899999999964330          122233321      3699999999999 888943 24444544

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PLN02368 alanine transaminase

Probab=98.19  E-value=3.3e-05  Score=77.95  Aligned_cols=166  Identities=11%  Similarity=-0.011  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      +.+.|+.||+++    |  ++++  +|++|+|+++|+.+++..+-..+||.++ ..-.++.  ....++..|.+++.+|.
T Consensus       109 ~~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~--y~~~~~~~g~~~v~v~~  184 (407)
T PLN02368        109 LPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL--YSATISLLGGTLVPYYL  184 (407)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChh--hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc--HHHHHHHcCCEEEEEec
Confidence            345777777776    6  4555  7999999999999998877435899865 3333331  23334556889988887


Q ss_pred             CCC-CCccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc---CCcc-C
Q 035915          231 AWL-DLRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV---GEDR-L  298 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~---G~~~-L  298 (344)
                      +.. +..++.++|++.+++. .+..+++++.+..-+|  |.+++.+.+.+    |++++++++.|-+-.-.   +..+ .
T Consensus       185 ~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~  264 (407)
T PLN02368        185 EESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFI  264 (407)
T ss_pred             ccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcc
Confidence            642 2357889999888631 0111466555543455  99999976543    47899999999865431   1101 1


Q ss_pred             CCC----CCC-------CcEEEEccccCCC-CCCC-ceEEEEE
Q 035915          299 NLA----LHR-------PDFVLCNLDNTQN-AQPS-KITCLLI  328 (344)
Q Consensus       299 DLs----~l~-------~DFvv~S~HK~l~-G~P~-GiG~L~V  328 (344)
                      .+.    .+.       -=+++.|+-|. | |.|. .+|.+++
T Consensus       265 s~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~~~~GlRiGy~i~  306 (407)
T PLN02368        265 SAKKVLMDMGPPISKEVQLVSFHTVSKG-YWGECGQRGGYFEM  306 (407)
T ss_pred             cHHHHHhhhcccccccceEEEEecCCcc-cccCCccceEEEEE
Confidence            110    111       22667899998 7 5552 3788874

>PRK05839 hypothetical protein; Provisional

Probab=98.18  E-value=7.8e-05  Score=73.61  Aligned_cols=162  Identities=12%  Similarity=0.062  Sum_probs=98.8

Q ss_pred             HHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCC-CCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          160 QARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPF-FRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       160 ~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~-~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      +.|+.+|+++    |  ++++  +|++|+|+++++.+++..+-+ .+|+.++. .-.+.  .....++..|++++.+|.+
T Consensus        64 ~lr~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~--~~~~~~~~~g~~v~~v~~~  139 (374)
T PRK05839         64 SLREAQRGFFKRRFKIELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQ--IYEGAAIASRAKVLLMPLT  139 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCch--hhHHHHHhcCCEEEEeecc
Confidence            3455555443    6  5565  799999999999988876543 46777643 22222  1233345679999999886


Q ss_pred             CCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc-CCcc----CC
Q 035915          232 WLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV-GEDR----LN  299 (344)
Q Consensus       232 ~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~-G~~~----LD  299 (344)
                      ..+ ..++....  .+.      +++++.++.-+|  |+.++.+.+.    .++++|+++++|-+-+-. ...+    ++
T Consensus       140 ~~~~~~~d~~~~--~~~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~  211 (374)
T PRK05839        140 KENDFTPSLNEK--ELQ------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLE  211 (374)
T ss_pred             cccCCcCCcchh--hhc------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhh
Confidence            322 22332221  121      356777664445  9999996554    357899999999875421 1111    11


Q ss_pred             C------CCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          300 L------ALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       300 L------s~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +      ...+-=+++.|+=|. ||.|. .+|.++..++..+
T Consensus       212 ~~~~~~~~~~~~vi~~~SfSK~-~~~~GlRiG~ii~~~~~~~  252 (374)
T PRK05839        212 ASILVGNESFKNVLVINSISKR-SSAPGLRSGFIAGDASILK  252 (374)
T ss_pred             hhcccCccccCcEEEEeccccc-cCCccceeEEEecCHHHHH
Confidence            1      011122788999998 88773 4899888665543

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=98.17  E-value=5.5e-05  Score=75.74  Aligned_cols=187  Identities=17%  Similarity=0.093  Sum_probs=113.9

Q ss_pred             cccccchHHHHHHhhccC-CCChhhhhhHHHHHHHHHHHHHcCCCCC----CCeEEEeCCHHHHHHHHHhhCCCCCCCeE
Q 035915          129 LDRTQLEPSRLLDILTKK-SSFPGSFISIPEIQARNKVLKHCGLPDD----EYLVLFTPNYRDAMMLVGESYPFFRGNFY  203 (344)
Q Consensus       129 ~s~v~~~~~~L~~~L~gn-ss~~g~~as~~le~AR~~IA~~Lga~p~----ey~VVFTsnaTeAlnlva~sl~~~~Gd~i  203 (344)
                      ...+++..+.++...++. +...|      +..||++||++++-+++    ..+|+.|+|+++|+.+++.++. ++|..|
T Consensus        81 ~~a~~Av~~al~Sgk~N~Yaps~G------~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNI  153 (447)
T KOG0259|consen   81 QEAEQAVVDALRSGKGNGYAPSVG------ILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANI  153 (447)
T ss_pred             HHHHHHHHHHHhcCCCCCcCCccc------cHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCce
Confidence            344555555555543333 22333      45599999999875431    1279999999999999999986 677665


Q ss_pred             E-EcCCcCHHHHHHHHHcCCcEEEEEeCC-CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHH---HHHH-
Q 035915          204 M-TIIGEELDYVREFASFKESKVILAPEA-WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMH---WISE-  276 (344)
Q Consensus       204 v-S~~eH~~~~ir~la~~~G~kV~~vp~~-~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~---~Ia~-  276 (344)
                      + ---+.+..  ..+|...|.+|++..+- ..+-+||.++++.++++++    ..+|.+--.| +|.++.-+   .|++ 
T Consensus       154 LlPrPGfp~Y--~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT----~AivviNP~NPcGnVys~~HL~kiae~  227 (447)
T KOG0259|consen  154 LLPRPGFPLY--DTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENT----VAIVVINPNNPCGNVYSEDHLKKIAET  227 (447)
T ss_pred             ecCCCCCchH--HHhhhhcCceeEeecccCcccceechHHHHHhhccCe----eEEEEeCCCCCCcccccHHHHHHHHHH
Confidence            4 33333322  23466789999984321 1134799999999998742    4555554332 39988873   4443 


Q ss_pred             HHhCCcEEEecccc--cCcCCcc-CCCC---CCCCcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          277 AHRNSWHVLLDATA--LVVGEDR-LNLA---LHRPDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       277 ar~~g~~vlvDAaQ--a~~G~~~-LDLs---~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      |++.|+.++-|=+=  .+-|-.| +.+.   ..=|=..+.+.-|- +-.|. .+|-+.+.
T Consensus       228 A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKr-W~VPGWRlGWi~~h  286 (447)
T KOG0259|consen  228 AKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKR-WIVPGWRLGWIALH  286 (447)
T ss_pred             HHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccc-cccCCceeeeEEEe
Confidence            58999999988642  2213222 2233   22334445556664 34473 47877664

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=98.17  E-value=4.3e-05  Score=76.03  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CC-------CCC-CeEE-EcCCcC--HHHHHHHHHc---
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PF-------FRG-NFYM-TIIGEE--LDYVREFASF---  220 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~-------~~G-d~iv-S~~eH~--~~~ir~la~~---  220 (344)
                      ....+.-++++++++.  +  .++|++++|||+..++... .+       .+| +.++ ..-.+|  ......+...   
T Consensus        82 ~~~~~l~~~l~~~~~~--~--~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~  157 (396)
T PRK04073         82 DQLGPWYEKVAKLTGK--D--MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY  157 (396)
T ss_pred             HHHHHHHHHHHhcCCC--C--eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccc
Confidence            3445566777777764  2  6999999999877654422 11       134 4454 334444  2111111110   


Q ss_pred             -CCc-----EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEec
Q 035915          221 -KES-----KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       221 -~G~-----kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvD  287 (344)
                       .+.     .+..+|.+      +.++|++.+++     ++++|.+...+|  |.+.|    ++.|.+ |+++|+++++|
T Consensus       158 ~~~~~~~~~~~~~~~~~------d~~~l~~~i~~-----~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D  226 (396)
T PRK04073        158 KRGFGPMLPGIKKIPYG------DLEALKAAITP-----NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIAD  226 (396)
T ss_pred             ccCCCCCCCCceEeCCC------CHHHHHHhccc-----CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence             000     12223321      45778887754     467777776654  99987    555644 68999999999


Q ss_pred             cccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          288 ATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                      -+|. + |..    ..+.....+|++++|  |. +|++ --+|+++.+++..+.
T Consensus       227 Ev~~g~-g~~g~~~~~~~~~~~pdi~~~s--K~-lg~gg~~ig~~~~~~~i~~~  276 (396)
T PRK04073        227 EIQTGL-GRTGKLFACDWDNVTPDMYILG--KA-LGGGVFPISCVAANRDILGV  276 (396)
T ss_pred             cchhCC-CcCcHHHHhhhcCCCCCEEEec--cc-ccCCCCcceEEEEcHHHHhh
Confidence            9998 4 532    224445679999886  98 7765 238999988766543

>PRK08637 hypothetical protein; Provisional

Probab=98.15  E-value=0.00011  Score=72.91  Aligned_cols=168  Identities=12%  Similarity=0.068  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHcC-----CCCCC-CeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG-----LPDDE-YLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg-----a~p~e-y~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ....|+.+++++.     .++++ .+|++|+|+++++.+++..+. .+||.|+. .-.++ .....++...|++++.+|.
T Consensus        46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~-~~~~~~~~~~g~~vv~v~~  123 (388)
T PRK08637         46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPDHNWG-NYKLTFNTRRGAEIVTYPI  123 (388)
T ss_pred             CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcCCCCc-cHHHHHHHhcCCEEEEecc
Confidence            4557777776652     33221 268999999999999998874 68888642 22222 1122223346899999887


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHh-----CCcEEEecccccCc---CCc
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHR-----NSWHVLLDATALVV---GED  296 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~-----~g~~vlvDAaQa~~---G~~  296 (344)
                      ..++..++.++|++.++... ...+.++.++.-+|  |..++.+.+.+    |++     ++++++.|-+-.-.   +..
T Consensus       124 ~~~~~~~d~~~l~~~~~~~~-~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~  202 (388)
T PRK08637        124 FDEDGGFDTDALKEALQAAY-NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSY  202 (388)
T ss_pred             cCCCCcCCHHHHHHHHHhhc-cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCcc
Confidence            32234578999988876100 01345555554345  99999854432    343     79999999875310   221


Q ss_pred             cCCC-C---CCCCcE--E-EEccccCCCCCCC-ceEEEEEe
Q 035915          297 RLNL-A---LHRPDF--V-LCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       297 ~LDL-s---~l~~DF--v-v~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      ..++ .   ...-..  + +.|+-|. |+.|. .+|.+++.
T Consensus       203 ~~~~~~~~~~~~~~vi~i~~~s~SK~-~~~pGlRlG~~~~~  242 (388)
T PRK08637        203 KESLFAALANLHSNILAVKLDGATKE-EFVWGFRVGFITFG  242 (388)
T ss_pred             chhhHHHhhcccccceEEEecccccc-CCCcccceEEEEEc
Confidence            1111 1   111122  2 2389997 77673 38888764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=98.13  E-value=6.7e-05  Score=74.87  Aligned_cols=160  Identities=11%  Similarity=-0.000  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcE------
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESK------  224 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~k------  224 (344)
                      ..+.|+.||+++      +++++  +|++|+|+++++.++...  +.+||.|+. .-.+..  ....++..|.+      
T Consensus        78 ~~~LR~aia~~~~~~~g~~~~~~--~I~it~Ga~~al~~l~~~--~~~gd~V~v~~P~Y~~--~~~~~~~~g~~~~~~~~  151 (409)
T PRK07590         78 YDFLREKIAENDYQARGCDISAD--EIFISDGAKCDTGNILDI--FGPDNTIAVTDPVYPV--YVDTNVMAGRTGEANED  151 (409)
T ss_pred             CHHHHHHHHHHHHHhcCCcCChh--hEEECCCHHHHHHHHHHh--cCCCCEEEEeCCCCcc--hHHHHHHcCCccccccc
Confidence            345788888875      67776  799999999999987543  368998653 222321  22334445765      


Q ss_pred             -----EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc
Q 035915          225 -----VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV  293 (344)
Q Consensus       225 -----V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~  293 (344)
                           ++.+|.+..++ +..+ +    ..    .+++++.++.-+|  |..++.+.+.    .|++++++++.|-+..-.
T Consensus       152 ~~~~~~~~v~~~~~~~-~~~d-~----~~----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~  221 (409)
T PRK07590        152 GRYSGIVYLPCTAENN-FVPE-L----PE----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAF  221 (409)
T ss_pred             ccccceeEeecccccC-Cccc-C----cc----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhh
Confidence                 77788753221 2221 1    11    2456666653345  9999986543    247899999999876520


Q ss_pred             ---CCccCCCCCCC----CcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          294 ---GEDRLNLALHR----PDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       294 ---G~~~LDLs~l~----~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                         +..+..+..+.    --+++.|+=|. ||.|. .+|.++..++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~-~~~pGlRiG~~i~~~~li~  269 (409)
T PRK07590        222 ISDPSLPHSIYEIEGARECAIEFRSFSKT-AGFTGTRCAYTVVPKELKG  269 (409)
T ss_pred             ccCCCCCcchhhCCCcccceEEEecCccc-cCCcCceeEEEEcCHHHhh
Confidence               11112232221    23667899999 87672 3899888766554

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.12  E-value=6.2e-05  Score=81.19  Aligned_cols=169  Identities=12%  Similarity=0.065  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      ..+.+|.+..|+.+|++.   ....|.|+|.|+..++.+. ..+||.|+..-.-|........--.|++-++++....  
T Consensus       174 G~i~eAq~~AA~~fgAd~---tyFlvNGTS~gn~a~i~a~-~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~  249 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNAL-LTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPF  249 (720)
T ss_pred             hHHHHHHHHHHHHhCCCc---eEEEeCChhHHHHHHHHHh-cCCCCEEEeecccHHHHHHHHHHHcCCeEEEeecccccc
Confidence            467889999999999963   4666788888888888765 4789997755543311122111225888888764431  


Q ss_pred             --CCccCHHH-----HHHHhhhcC-C---C-CCeeEEEEeCccc-cccccHHHHHHH--HhCCcEEEecccccCcCCc--
Q 035915          234 --DLRIKGSQ-----LSQYFRRKC-K---H-TPKGLFSYPADIN-GTRYSMHWISEA--HRNSWHVLLDATALVVGED--  296 (344)
Q Consensus       234 --~g~i~~~~-----L~~~l~~~~-~---~-~~t~LVa~~avSN-G~i~Pl~~Ia~a--r~~g~~vlvDAaQa~~G~~--  296 (344)
                        -+.|+.++     |++.+.... .   . .+.+++.++.-+- |+.++++.|.+.  |..+ ++|+|-||..  |.  
T Consensus       250 Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhga--h~~F  326 (720)
T PRK13578        250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVG--YEQF  326 (720)
T ss_pred             CCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchh--hhcc
Confidence              12345444     887776420 0   0 1246777764332 999999888653  6777 9999998874  33  


Q ss_pred             -cC--CCC----CCCCc----EEEEccccCCCCCCCceEEEEEeCCC
Q 035915          297 -RL--NLA----LHRPD----FVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       297 -~L--DLs----~l~~D----Fvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                       ++  ++.    +.++|    |++-|.||. +++=+....|-++.+.
T Consensus       327 ~p~~~~~p~~al~~GaD~p~i~v~QStHKt-L~alTQaS~LHvk~~~  372 (720)
T PRK13578        327 IPMMADCSPLLLELNENDPGIFVTQSVHKQ-QAGFSQTSQIHKKDNH  372 (720)
T ss_pred             CcccccCChhhhhcCCCCCCeEEEEChhhc-chhhhhHhhhhcCCcc
Confidence             21  121    35899    999999999 7667677777776644

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.11  E-value=0.00016  Score=72.81  Aligned_cols=161  Identities=14%  Similarity=0.122  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHcC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC--C
Q 035915          159 IQARNKVLKHCG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW--L  233 (344)
Q Consensus       159 e~AR~~IA~~Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~--~  233 (344)
                      +...+...+..|  .++++ +|+.|.|+++|+.++..++ ..+||+++ ..-.+..  ...+.+-.|.++..+|.+.  .
T Consensus        72 eaia~~~~~~~~~~~~~~~-eiivt~Ga~~al~~~~~a~-~~pGDeVlip~P~Y~~--y~~~~~~~gg~~v~v~l~~~~~  147 (393)
T COG0436          72 EAIAEKYKRRYGLDVDPEE-EIIVTAGAKEALFLAFLAL-LNPGDEVLIPDPGYPS--YEAAVKLAGGKPVPVPLDEEEN  147 (393)
T ss_pred             HHHHHHHHHHhCCCCCCCC-eEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCCcC--HHHHHHhcCCEEEEEeCCcCcc
Confidence            333344444444  34443 6999999999999998887 57899854 3333331  2333344689999998642  2


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCc---C---CccCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVV---G---EDRLNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~---G---~~~LDLs  301 (344)
                      +-.++.++|++.+++     +|+++.+.-=||  |.+++-+.+.+    |++++++++.|-+=.-.   |   +..+.+.
T Consensus       148 ~f~~d~~~l~~~i~~-----ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~  222 (393)
T COG0436         148 GFKPDLEDLEAAITP-----KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELA  222 (393)
T ss_pred             CCcCCHHHHHhhcCc-----cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcC
Confidence            457899999999986     477777765556  99999865543    58899999998652210   1   0111222


Q ss_pred             CC-CCcEEEEccccCCCCCCC-ceEEEEEe
Q 035915          302 LH-RPDFVLCNLDNTQNAQPS-KITCLLIR  329 (344)
Q Consensus       302 ~l-~~DFvv~S~HK~l~G~P~-GiG~L~Vr  329 (344)
                      .. ..-+.+-|+=|. |+.+- .+|.++..
T Consensus       223 ~~~~~~i~i~s~SK~-~~mtGwRvG~~v~~  251 (393)
T COG0436         223 GARDRTITINSFSKT-YGMTGWRIGWVVGP  251 (393)
T ss_pred             CCcceEEEEeccccc-ccccccceeEeecC
Confidence            11 223566699998 88552 48999887

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=98.09  E-value=2.9e-05  Score=77.36  Aligned_cols=162  Identities=7%  Similarity=-0.026  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCC----CCCCeEEE--cCCcCHHHHHHHHHcCC----
Q 035915          159 IQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPF----FRGNFYMT--IIGEELDYVREFASFKE----  222 (344)
Q Consensus       159 e~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~----~~Gd~ivS--~~eH~~~~ir~la~~~G----  222 (344)
                      .+.|+.||+++      +++++  +|++|+|+++|+.+++..+.-    .+|+.++.  .-.++.  ....+...+    
T Consensus        77 ~~LR~aia~~~~~~~g~~v~~~--~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~--y~~~~~~~~~~~~  152 (416)
T PRK09440         77 DELIEALAALLNERYGWNISPQ--NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIG--YADAGLEEDLFVS  152 (416)
T ss_pred             HHHHHHHHHHHHHHhCCCCChh--hEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchh--hHHHhhccCceee
Confidence            45777777776      36665  799999999999999887732    35777654  233331  111111111    


Q ss_pred             cEEEEEeCCCC--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcC
Q 035915          223 SKVILAPEAWL--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVG  294 (344)
Q Consensus       223 ~kV~~vp~~~~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G  294 (344)
                      .....++.+..  +..++.++|+  +..     +++++.++.-+|  |++++.+++.    .|+++++++++|-+... .
T Consensus       153 ~~~~~~~~~~~~~~~~~d~~~l~--~~~-----~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~-~  224 (416)
T PRK09440        153 YRPNIELLPEGQFKYHVDFEHLH--IDE-----DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP-P  224 (416)
T ss_pred             cccccccccccccccCCCHHHcc--cCC-----CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc-c
Confidence            11122232211  1246777765  222     356666664456  9999985443    35789999999999863 2


Q ss_pred             CccC---CCCC--CCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          295 EDRL---NLAL--HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       295 ~~~L---DLs~--l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      ...+   ++..  .+-=+++.|+-|+  +.|. .+|.++..+++.+
T Consensus       225 ~~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~~~l~~  268 (416)
T PRK09440        225 FPGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIADEEIIE  268 (416)
T ss_pred             CCCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCCHHHHH
Confidence            2111   1111  1122678899996  4452 4898887665543

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.08  E-value=8.6e-05  Score=72.60  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      .+.|+.+|+++|+++.+ +|++|+|+++++.++...  +.+|+.++..-.  -......++..|++++.+|.+.      
T Consensus        56 ~~L~~~ia~~~~~~~~~-~I~i~~Gs~e~i~~l~~~--~~~g~v~v~~P~--y~~y~~~~~~~g~~~~~v~~~~------  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAA-HVLPVAGSQAAIRALPAL--LPRGRVGIAPLA--YSEYAPAFARHGHRVVPLDEAA------  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcc-cEEECcCHHHHHHHHHHh--cCCCeEEEcCCC--cHHHHHHHHHCCCEEEeecccc------
Confidence            57899999999996422 799999999999987653  456764432212  1223344566799988887643      


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCccCCCCCC-CCc--EEE
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDRLNLALH-RPD--FVL  309 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~LDLs~l-~~D--Fvv  309 (344)
                       +.+.    .     .++++.+..-+|  |+.++.+++.+    +++++.++++|=+-.- -.....+..+ +.+  +++
T Consensus       125 -~~~~----~-----~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~-~~~~~s~~~~~~~~~vi~l  193 (339)
T PRK06959        125 -DTLP----A-----ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFAD-TLPAASLAAHTDRPGLVVL  193 (339)
T ss_pred             -hhcc----c-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc-CCCcccchhccCCCCEEEE
Confidence             1111    1     122333333345  99999976653    3467888899987553 2111122111 112  788


Q ss_pred             EccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      .|+=|. ||.|. .+|.++..++..+
T Consensus       194 ~SfSK~-~gl~GlRiGy~v~~~~li~  218 (339)
T PRK06959        194 RSVGKF-FGLAGVRAGFVLAAPALLA  218 (339)
T ss_pred             ecChhh-cCCcchheEEEecCHHHHH
Confidence            899999 88672 3799988765544

>PLN02231 alanine transaminase

Probab=98.05  E-value=0.0001  Score=77.07  Aligned_cols=168  Identities=7%  Similarity=-0.066  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      -+.+.|+.||+++    |  ++++  +|++|+|+++|+.+++..+--.+||.|+.. -.++.  ....++..|.+++.+|
T Consensus       169 G~~~lReaIA~~~~~r~g~~~~pe--~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~--y~~~~~~~g~~~v~~~  244 (534)
T PLN02231        169 GIKGLRDAIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPL--YSASIALHGGTLVPYY  244 (534)
T ss_pred             CcHHHHHHHHHHHHhccCCCCCcc--cEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChh--HHHHHHHcCCEEEEEe
Confidence            3567888888877    4  3454  799999999999999998743468886532 22331  1222345688998888


Q ss_pred             CCCCC-CccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc----CCcc
Q 035915          230 EAWLD-LRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV----GEDR  297 (344)
Q Consensus       230 ~~~~~-g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~----G~~~  297 (344)
                      .+..+ ..++.++|++.++... +..+++++.+..-+|  |.+++.+.+.    .|++++++++.|-+-.-.    +...
T Consensus       245 l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~  324 (534)
T PLN02231        245 LDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKF  324 (534)
T ss_pred             cCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCc
Confidence            76432 2578899998886411 111356655543345  9999996554    357899999999765420    1111


Q ss_pred             CCCCCC---------CCc-EEEEccccCCCCCCC-ceEEEEE
Q 035915          298 LNLALH---------RPD-FVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       298 LDLs~l---------~~D-Fvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      ..+..+         ++. +++.|+=|.++|.|- .+|.+.+
T Consensus       325 ~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~  366 (534)
T PLN02231        325 HSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  366 (534)
T ss_pred             ccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence            111111         112 344589996245452 4788776

>PLN02955 8-amino-7-oxononanoate synthase

Probab=97.98  E-value=0.00046  Score=71.41  Aligned_cols=157  Identities=12%  Similarity=0.059  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC------------CC-CCCCeEEEcCCcC---HHHHHHHHHc
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY------------PF-FRGNFYMTIIGEE---LDYVREFASF  220 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl------------~~-~~Gd~ivS~~eH~---~~~ir~la~~  220 (344)
                      ..++.-+++|+|+|.+.   .++|.+|....+- ++.++            +. .+++.++++-..|   .+.++ +++.
T Consensus       148 ~h~~LE~~LA~f~g~e~---all~sSGy~AN~~-~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~  222 (476)
T PLN02955        148 YHRLLESSLADLKKKED---CLVCPTGFAANMA-AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAER  222 (476)
T ss_pred             HHHHHHHHHHHHHCCCc---EEEECChHHHHHH-HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccc
Confidence            44778889999999853   4677666655333 22222            11 2445566665544   22332 2333


Q ss_pred             C-CcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-cccccHHHHHH-HHhCCcEEEecccccCcCCc
Q 035915          221 K-ESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYSMHWISE-AHRNSWHVLLDATALVVGED  296 (344)
Q Consensus       221 ~-G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~  296 (344)
                      + ++++...+-+      |.++|++.+... .. ...+|.+..+- . |.+.|++++.+ ++++|++++||=+|+. |..
T Consensus       223 ~~~a~~~~f~HN------D~~~Le~~L~~~-~~-~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~-Gv~  293 (476)
T PLN02955        223 QGNVEVFVYRHC------DMYHLNSLLSSC-KM-KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGT-FVC  293 (476)
T ss_pred             cCCceEEEeCCC------CHHHHHHHHHhC-CC-CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccC-cee
Confidence            3 4777766643      467888888642 11 23455555554 3 99999987765 5789999999999997 643


Q ss_pred             c---------CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          297 R---------LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       297 ~---------LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      -         +++. .++|+++.++=|. ||..  -|++..+++
T Consensus       294 G~~G~G~~e~~g~~-~di~ii~~TLsKA-~G~~--GGfi~gs~~  333 (476)
T PLN02955        294 GENGGGVAEEFNCE-ADVDLCVGTLSKA-AGCH--GGFIACSKK  333 (476)
T ss_pred             cCCCCcHHHHhCCC-CCCcEEEEeCccc-hhcc--CceeecHHH
Confidence            2         2232 3689999999999 8743  344555553

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.96  E-value=0.00013  Score=74.44  Aligned_cols=166  Identities=13%  Similarity=0.070  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CC-CC-C--eEEEcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FF-RG-N--FYMTIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~-~G-d--~ivS~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ...++-+-++.+||++++.-. .-|.|.||++-+.-..+.   .. +| +  ++++..- -..+|..+++..+++++.+|
T Consensus       121 ~e~~~Vnm~~~L~~~~~~~~g-~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~-v~~a~eK~a~yf~v~l~~V~  198 (491)
T KOG1383|consen  121 LEAECVNMIANLFNAPSDSCG-CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN-VHAAFEKAARYFEVELREVP  198 (491)
T ss_pred             HHHHHHHHHHHHhcCCccccC-ccccccchHHHHHHHHHHHHHHhccCCCCccccchHH-HHHHHHHHHhhEEEEEEeee
Confidence            456778889999999865322 345678888333222221   11 12 1  1222211 02357778888899999999


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccHHHHHH-HHh-CCcEEEecccccC--c-----CCccC
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSMHWISE-AHR-NSWHVLLDATALV--V-----GEDRL  298 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl~~Ia~-ar~-~g~~vlvDAaQa~--~-----G~~~L  298 (344)
                      ++..+-++|...+.+.+++     +|.+++..+-+  +|.+=|++.+.+ +.+ .++.+|+||+-.=  .     .-.++
T Consensus       199 ~~~~~~~~D~~k~~~~i~e-----Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~f  273 (491)
T KOG1383|consen  199 LDEGDYRVDPGKVVRMIDE-----NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEF  273 (491)
T ss_pred             ccccceEecHHHHHHHhcc-----ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccc
Confidence            9876778999999999876     47777777666  499999998875 455 9999999997531  0     22357


Q ss_pred             CCCCCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          299 NLALHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       299 DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ||..-++--+++++||. -..|+|+|..+-|.
T Consensus       274 dFr~p~V~Sisa~~HKY-Gl~~~G~~~vl~r~  304 (491)
T KOG1383|consen  274 DFRVPGVTSISADGHKY-GLAPAGSSWVLYRN  304 (491)
T ss_pred             ccCCCCceeEeecccee-eeeecCcEEEEEcc
Confidence            77777888999999995 33499999766554

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.96  E-value=0.00019  Score=72.59  Aligned_cols=153  Identities=11%  Similarity=0.017  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      .......++.+-|+..   .++|.||.+.....+..-.  ..|++++ +..-+.  ...++.+..+.|+++..+..+   
T Consensus        79 ~~~le~~iaal~ga~~---~l~fsSGmaA~~~al~~L~--~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~---  150 (409)
T KOG0053|consen   79 RDVLESGIAALEGAAH---ALLFSSGMAAITVALLHLL--PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD---  150 (409)
T ss_pred             hHHHHHHHHHHhCCce---EEEecccHHHHHHHHHHhc--CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh---
Confidence            3445667888888852   5777777765544444333  4677765 333344  446777778889998887654   


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                         +.+.++..+.+     ++++|-+-.-+|  ..+.||+.|++ +|++|+.++||.+=+- + ...|-=.+++|.++-|
T Consensus       151 ---~~~~~~~~i~~-----~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~-p-~~~~pL~lGADIV~hS  220 (409)
T KOG0053|consen  151 ---DLKKILKAIKE-----NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGS-P-YNQDPLPLGADIVVHS  220 (409)
T ss_pred             ---hHHHHHHhhcc-----CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCc-c-cccChhhcCCCEEEEe
Confidence               34567777765     477888877778  99999988865 6999999999998776 4 2334335789999999


Q ss_pred             cccCCCCCCCc--eEEEEEe
Q 035915          312 LDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       312 ~HK~l~G~P~G--iG~L~Vr  329 (344)
                      +=|| ++|-..  .|++.++
T Consensus       221 aTKy-i~Ghsdvi~G~iv~n  239 (409)
T KOG0053|consen  221 ATKY-IGGHSDVIGGSVVLN  239 (409)
T ss_pred             eeee-ecCCcceeeeEEecC
Confidence            9999 886543  3455444

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=97.95  E-value=0.00024  Score=70.19  Aligned_cols=163  Identities=12%  Similarity=0.018  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---CCCCCCC----eEEE-cCCcC--HHHHHHHHHcCCcEE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---YPFFRGN----FYMT-IIGEE--LDYVREFASFKESKV  225 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l~~~~Gd----~ivS-~~eH~--~~~ir~la~~~G~kV  225 (344)
                      ....+.-++++++.+.  +  .|+||+|+|||+..++..   +.+.+|+    ++++ .-.+|  ...+.. +  .+...
T Consensus        73 ~~~~~la~~l~~~~~~--~--~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~-~--~~~~~  145 (389)
T PRK01278         73 PEQERLAERLVENSFA--D--KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIA-A--GGQEK  145 (389)
T ss_pred             hHHHHHHHHHHhhCCC--C--EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHh-c--cCChh
Confidence            3445566667776643  3  699999999998877543   3233454    5543 33344  211111 1  11111


Q ss_pred             EE---EeCCCC---CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--c-ccccHH---HHH-HHHhCCcEEEecccccC
Q 035915          226 IL---APEAWL---DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--G-TRYSMH---WIS-EAHRNSWHVLLDATALV  292 (344)
Q Consensus       226 ~~---vp~~~~---~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G-~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~  292 (344)
                      ..   .|....   -...+.+++++.+++     ++++|.+...+|  | ..+|-+   .|. .|+++|+++++|-+|.-
T Consensus       146 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g  220 (389)
T PRK01278        146 YLEGFGPLVPGFDQVPFGDIEALKAAITP-----NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCG  220 (389)
T ss_pred             hcccCCCCCCCceEeCCCCHHHHHHhhCC-----CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            10   011000   001367788888864     466777665554  6 444554   443 35899999999999982


Q ss_pred             cCCc----cCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          293 VGED----RLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       293 ~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      .|..    ..+.....+|.+++  -|. ++ + |  +|+++.+++..+.
T Consensus       221 ~g~~g~~~~~~~~~~~pdi~t~--sK~-l~-~-G~~ig~~~~~~~~~~~  264 (389)
T PRK01278        221 MGRTGKLFAHEWAGVTPDIMAV--AKG-IG-G-GFPLGACLATEEAAKG  264 (389)
T ss_pred             CCcCCcceeecccCCCCCEEEE--ehh-cc-C-CcceEEEEEcHHHHhc
Confidence            1432    11222456887655  588 66 3 4  9999988765443

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=97.93  E-value=0.0002  Score=70.40  Aligned_cols=163  Identities=12%  Similarity=0.069  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CC-----CCCeEE-EcCCcC-HHHHHHHHHcCCcEEE-
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FF-----RGNFYM-TIIGEE-LDYVREFASFKESKVI-  226 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~-----~Gd~iv-S~~eH~-~~~ir~la~~~G~kV~-  226 (344)
                      ...++..+.++++.|.  +  .|+||+|+++|+.+++.... +.     ..+.++ ..-.+| .. ...+.. .+.... 
T Consensus        81 ~~~~~la~~l~~~~~~--~--~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~-~~~~~~-~~~~~~~  154 (396)
T PRK02627         81 EPQEELAEKLVELSGM--D--KVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRT-LATLSA-TGQPKYQ  154 (396)
T ss_pred             HHHHHHHHHHHhhcCC--C--EEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCccc-HHHHHh-cCCcccc
Confidence            3445666777777765  3  69999999999998777331 11     114444 333333 11 111111 111111 


Q ss_pred             --EEeCCCCCC----ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--c-ccccH---HHHH-HHHhCCcEEEeccccc-C
Q 035915          227 --LAPEAWLDL----RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--G-TRYSM---HWIS-EAHRNSWHVLLDATAL-V  292 (344)
Q Consensus       227 --~vp~~~~~g----~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G-~i~Pl---~~Ia-~ar~~g~~vlvDAaQa-~  292 (344)
                        ..|... +-    .-+.++|++.+.+     ++++|.+....|  | ..+|.   +.|. .|+++|+++++|-++. +
T Consensus       155 ~~~~~~~~-~~~~~~~~d~~~l~~~i~~-----~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~  228 (396)
T PRK02627        155 EGFEPLVE-GFIYVPFNDIEALKAAITD-----KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGM  228 (396)
T ss_pred             ccCCCCCC-CceEeCCCCHHHHHHhcCC-----CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCC
Confidence              111110 00    0167788888753     467777654443  6 34554   3443 3588999999999998 4


Q ss_pred             cCCc----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          293 VGED----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       293 ~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                       |..    .++.....+|++++|  |. +++--.+|+++.+++..+
T Consensus       229 -g~~g~~~~~~~~~~~pdi~t~s--K~-~~~G~rig~~~~~~~~~~  270 (396)
T PRK02627        229 -GRTGKLFAYQHYGIEPDIMTLA--KG-LGGGVPIGAVLAKEKVAD  270 (396)
T ss_pred             -CccCceeeehhcCCCCCEEEEc--ch-hhCCcccEEEEEcHHHHh
Confidence             432    122334568988776  98 772223899998876544

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.91  E-value=0.00052  Score=74.13  Aligned_cols=165  Identities=12%  Similarity=0.044  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      ..+.+|.+..|+.+||+.   ....|.|+|.|++.++.+. ..+||.++..-.-|......+ .-.|++-++++..+.  
T Consensus       195 G~i~eAe~~aA~~fgAd~---tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~~aL-ilsga~PVYl~P~~n~~  269 (713)
T PRK15399        195 GPHLEAEEYIARTFGAEQ---SYIVTNGTSTSNKIVGMYA-APAGSTLLIDRNCHKSLAHLL-MMSDVVPIWLKPTRNAL  269 (713)
T ss_pred             hHHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH-HHcCCeeEEeccccccc
Confidence            467889999999999963   4666788888888888776 578999775554331112222 235888888764431  


Q ss_pred             --CCccCH-----HHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEE-EecccccCcCCc---cC--
Q 035915          234 --DLRIKG-----SQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHV-LLDATALVVGED---RL--  298 (344)
Q Consensus       234 --~g~i~~-----~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~v-lvDAaQa~~G~~---~L--  298 (344)
                        -+.|+.     +.|++.+....+..+.+.+.++.- |  |+.+++++|.+.-  |+.+ |+|-||..  |.   |+  
T Consensus       270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~--g~~~ilvDEAhga--h~~F~p~~~  344 (713)
T PRK15399        270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL--DVPSIHFDSAWVP--YTHFHPIYQ  344 (713)
T ss_pred             CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh--CCCEEEEeccchh--hhhcCcccC
Confidence              123454     788888864321112245555533 4  9999999886533  6666 79999873  22   21  


Q ss_pred             CCCCC----CCcEE---EEccccCCCCCCCceEEEEEeCC
Q 035915          299 NLALH----RPDFV---LCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       299 DLs~l----~~DFv---v~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +.+.+    ++|.+   +-|.||. +++-+....|-++..
T Consensus       345 ~~sam~~~~~aD~~i~~tQStHKt-L~alTQaS~iHvk~~  383 (713)
T PRK15399        345 GKSGMSGERVPGKVIFETQSTHKM-LAAFSQASLIHIKGE  383 (713)
T ss_pred             CcChhhCCCCCCeeeeeeeehhcc-ccccchheeeeecCC
Confidence            12222    45666   9999999 776778888888764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.88  E-value=0.00023  Score=76.84  Aligned_cols=165  Identities=10%  Similarity=0.013  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC-
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD-  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~-  234 (344)
                      ..+.+|.+.+|+.+||+.   ....|.|+|.|++.++.+. ..+||.++..-.-|......+ .-.|++-++++..+.. 
T Consensus       195 G~i~eAe~~AA~~fgAd~---tyfvvNGTS~~n~av~~a~-~~~Gd~VLvdRN~HKSv~haL-ilsga~PVYl~P~rn~~  269 (714)
T PRK15400        195 GPHKEAEEYIARVFNADR---SYMVTNGTSTANKIVGMYS-APAGSTVLIDRNCHKSLTHLM-MMSDVTPIYFRPTRNAY  269 (714)
T ss_pred             hHHHHHHHHHHHHhCCCc---EEEEeCchHHHHHHHHHHh-cCCCCEEEeecccHHHHHHHH-HHcCCeEEEeccccccc
Confidence            467889999999999963   3566678888888887765 578999775554331112222 2358888887654311 


Q ss_pred             ---CccC-----HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccC-----
Q 035915          235 ---LRIK-----GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL-----  298 (344)
Q Consensus       235 ---g~i~-----~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L-----  298 (344)
                         +.|+     .+.|++.+....+..+...+.++. +|  |+.++++.|.+ ++.++  +|+|-||..  |..+     
T Consensus       270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~-pTYdG~~yd~~~I~~~~~~~~--ilvDEAwga--h~~F~p~~~  344 (714)
T PRK15400        270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITN-STYDGLLYNTDFIKKTLDVKS--IHFDSAWVP--YTNFSPIYE  344 (714)
T ss_pred             CCccCCCccccCHHHHHHHHHhCccccCccEEEEEC-CCCccEecCHHHHHHHhCCCC--EEEEccchh--hhccCcccC
Confidence               2345     788888886432111222455553 34  99999988865 67766  789998874  3211     


Q ss_pred             CCCC--CCC---c--EEEEccccCCCCCCCceEEEEEeCC
Q 035915          299 NLAL--HRP---D--FVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       299 DLs~--l~~---D--Fvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +.+.  .++   |  |++-|.||. +++-+....|-++..
T Consensus       345 ~~sam~~ga~~~~~i~vtQStHKt-L~alTQaS~LHvkg~  383 (714)
T PRK15400        345 GKCGMSGGRVEGKVIYETQSTHKL-LAAFSQASMIHVKGD  383 (714)
T ss_pred             CcChhhcCCCCCCceEEEEchhhc-ccchhHHhHHHHcCC
Confidence            1121  234   5  999999999 665666666666553

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00029  Score=71.71  Aligned_cols=160  Identities=18%  Similarity=0.117  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHH-----HHHHHHhhCCCCCCC----e-EEEcCCcCHHHHHHHHHcCCcE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRD-----AMMLVGESYPFFRGN----F-YMTIIGEELDYVREFASFKESK  224 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTe-----Alnlva~sl~~~~Gd----~-ivS~~eH~~~~ir~la~~~G~k  224 (344)
                      .+.+.+..+.+.+.-|-+    .|-+.+|+-.     ++ ++++.|....|+    . ++-..-|..|...  |.-.|.+
T Consensus       108 l~li~~Lq~~L~~ITG~D----avsLQP~AGAqGE~aGl-l~Ir~YHe~rG~~~R~~~LIP~SAHGTNPAS--Aam~G~~  180 (496)
T COG1003         108 LELIYELQEWLKEITGMD----AVSLQPNAGAQGEYAGL-LAIRAYHESRGEGHRNICLIPDSAHGTNPAS--AAMAGFK  180 (496)
T ss_pred             HHHHHHHHHHHHHhcCCc----eeeccCCCCcchhhHHH-HHHHHHHHHcCCCcCcEEEeeccccCCChhh--HhhcCce
Confidence            346678888888888874    4888876543     23 345555433343    3 3434445555332  2335999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c--ccc-ccHHHHHH-HHhCCcEEEecccccC--cCCcc
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N--GTR-YSMHWISE-AHRNSWHVLLDATALV--VGEDR  297 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N--G~i-~Pl~~Ia~-ar~~g~~vlvDAaQa~--~G~~~  297 (344)
                      |+.|+.+. +|.+|.++|++.+..       ++-+++..+ |  |.- ..|.+|++ +|++|..|..|+|-.=  +|..+
T Consensus       181 VV~V~~~~-~G~VDlddLk~k~~~-------~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r  252 (496)
T COG1003         181 VVVVKCDE-NGNVDLDDLRAKAED-------NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLAR  252 (496)
T ss_pred             EEEEecCC-CCCccHHHHHHHhcc-------ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccc
Confidence            99999987 689999999998864       356666554 3  765 45666765 5999999999999763  13322


Q ss_pred             CCCCCCCCcEEEEccccCCCCCCC-----ceEEEEEeCCC
Q 035915          298 LNLALHRPDFVLCNLDNTQNAQPS-----KITCLLIRKKS  332 (344)
Q Consensus       298 LDLs~l~~DFvv~S~HK~l~G~P~-----GiG~L~Vr~~~  332 (344)
                        -.+++.|.+-+++||. |+.|-     |.|=+-|+..+
T Consensus       253 --PGd~G~DV~HlNLHKT-F~iPHGGGGPG~GPvgVk~~L  289 (496)
T COG1003         253 --PGDMGFDVVHLNLHKT-FCIPHGGGGPGAGPVGVKAHL  289 (496)
T ss_pred             --ccccccceEEeecccc-cccCCCCCCCCCCceehHhhc
Confidence              2467899999999999 75443     66766666544

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00065  Score=67.77  Aligned_cols=163  Identities=14%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHcC-CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKVLKHCG-LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lg-a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...+.|+.++++.| .+++  .|+.+.|++|.|.++.+.+. .+||.++.. -.+.  .-...|+..|++++.+|...  
T Consensus        58 ~~~~l~~a~a~~~~~~~~~--~V~~gnGsde~i~~l~~~~~-~~gd~vl~~~Ptf~--~Y~~~a~~~g~~~~~v~~~~--  130 (356)
T COG0079          58 DYRELRAALAEYYGVVDPE--NVLVGNGSDELIELLVRAFV-EPGDTVLIPEPTFS--MYEIAAQLAGAEVVKVPLKE--  130 (356)
T ss_pred             cHHHHHHHHHHHhCCCCcc--eEEEcCChHHHHHHHHHHhh-cCCCEEEEcCCChH--HHHHHHHhcCCeEEEecccc--
Confidence            35678999999999 6655  68889999999999999884 578876533 2211  12334566799999999864  


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHh---CCcEEEeccccc--CcCCccCCCCCCCCc-
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHR---NSWHVLLDATAL--VVGEDRLNLALHRPD-  306 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~---~g~~vlvDAaQa--~~G~~~LDLs~l~~D-  306 (344)
                      ..++.+.+...+.+     ++++|-+..=||  |..++.+.|..+.+   .+++|+||-|=.  . +..-+++-. ..+ 
T Consensus       131 ~~~d~~~~~~~~~~-----~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~-~~~~~~l~~-~~~n  203 (356)
T COG0079         131 FRLDLDAILAAIRD-----KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFS-PESSLELLK-YPPN  203 (356)
T ss_pred             cccCHHHHHHhhhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcC-Cchhhhhcc-CCCC
Confidence            46777888877765     356666664555  99999988865432   288999998532  2 211122222 344 


Q ss_pred             -EEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          307 -FVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       307 -Fvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                       ++.=|+=|. ||-|. -+|..+..+++.+
T Consensus       204 livlRTfSKa-~gLAGlRlGy~ia~~~~i~  232 (356)
T COG0079         204 LIVLRTFSKA-FGLAGLRVGYAIANPELIA  232 (356)
T ss_pred             EEEEEecHHh-hhcchhceeeccCCHHHHH
Confidence             677799998 88773 3788777665543

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.74  E-value=0.00027  Score=70.77  Aligned_cols=162  Identities=15%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             HHHHHHHHcCCCCCCCeEEEe--CCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHH----------HcCCcEEEEE
Q 035915          161 ARNKVLKHCGLPDDEYLVLFT--PNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFA----------SFKESKVILA  228 (344)
Q Consensus       161 AR~~IA~~Lga~p~ey~VVFT--snaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la----------~~~G~kV~~v  228 (344)
                      .-+..|+.||+..   -+|=.  -++|+|+.+.+.++ +++||++++..+-+.+++++.-          +..|++...+
T Consensus        59 le~iyA~vfgaE~---ALVRpq~vSGTHAi~~~Lfg~-LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v  134 (403)
T PF06838_consen   59 LERIYADVFGAED---ALVRPQFVSGTHAIALALFGV-LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREV  134 (403)
T ss_dssp             HHHHHHHHCT-SE---EEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE-
T ss_pred             HHHHHHHHhCchh---hhhcccccchHHHHHHHHHhc-CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEE
Confidence            3444688999852   24433  28899999999887 6799999988887654454432          3468899999


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccc--ccHHHHHH----HH--hCCcEEEecccccCcCCc--c
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTR--YSMHWISE----AH--RNSWHVLLDATALVVGED--R  297 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i--~Pl~~Ia~----ar--~~g~~vlvDAaQa~~G~~--~  297 (344)
                      |+.. ++.+|.+.+++.+++     +|++|.+.--.. ..|  +.++.|++    +|  +.++.++||=+=   |..  .
T Consensus       135 ~L~~-dg~~D~~~i~~~~~~-----~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY---GEFvE~  205 (403)
T PF06838_consen  135 PLTE-DGTIDWEAIKKALKP-----NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY---GEFVET  205 (403)
T ss_dssp             -B-T-TSSB-HHHHHHHHHT-----TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT---TTTTSS
T ss_pred             eecC-CCCcCHHHHHHhhcc-----CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc---ceeccc
Confidence            9876 589999999999985     589999884322 333  33456653    23  478999999743   322  1


Q ss_pred             CCCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCccccc
Q 035915          298 LNLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFDTST  337 (344)
Q Consensus       298 LDLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~~~~  337 (344)
                      ..-.+.++|.++.|+=|- .||   |+ =|.+.-|+++.+.++
T Consensus       206 ~EP~~vGADl~aGSLIKN-pGGgiApt-GGYIaGr~~lVe~~a  246 (403)
T PF06838_consen  206 QEPTEVGADLMAGSLIKN-PGGGIAPT-GGYIAGRKDLVERAA  246 (403)
T ss_dssp             S-GGGGT-SEEEEETTSG-GGTTT-SS--EEEEESHHHHHHHH
T ss_pred             cCccccchhheeccceeC-CCCCccCc-CCEEechHHHHHHHH
Confidence            112246899999999998 554   53 255555777766633

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=97.70  E-value=0.0025  Score=66.82  Aligned_cols=148  Identities=11%  Similarity=0.014  Sum_probs=91.0

Q ss_pred             eEEEeCCHHHHHHHHHhhC----CCCCCCeEEE-cCCcC-HHHHHHHHHcCCcEEEEEeCCCCC------CccCHHHHHH
Q 035915          177 LVLFTPNYRDAMMLVGESY----PFFRGNFYMT-IIGEE-LDYVREFASFKESKVILAPEAWLD------LRIKGSQLSQ  244 (344)
Q Consensus       177 ~VVFTsnaTeAlnlva~sl----~~~~Gd~ivS-~~eH~-~~~ir~la~~~G~kV~~vp~~~~~------g~i~~~~L~~  244 (344)
                      +|+.|+|+|+|+..++.++    -..+||.|+. .-.+. ...+-.+ ...|++++.++.+..+      -.++.++|++
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l-~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~  235 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPEL-PRYDFEVVRIKADEMTEDGTHTWQYPDKELEK  235 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHH-hcCCcEEEEeecccccccccccCCCCHHHHHH
Confidence            7999999999999888763    2578998652 22222 1111111 2347787777764211      3467888887


Q ss_pred             HhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhC--CcEEEecccccCcCCccCCCCCCCC--cEEEEcccc
Q 035915          245 YFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRN--SWHVLLDATALVVGEDRLNLALHRP--DFVLCNLDN  314 (344)
Q Consensus       245 ~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~--g~~vlvDAaQa~~G~~~LDLs~l~~--DFvv~S~HK  314 (344)
                      ++++     +++++.+..-+|  |.+++.+.+.    .|+++  +++++.|=+-.-.......+-...+  -+++.|+=|
T Consensus       236 ~~~~-----~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK  310 (521)
T TIGR03801       236 LRDP-----SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSK  310 (521)
T ss_pred             hcCC-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchh
Confidence            7654     356666543345  9999975443    24554  8999999875420111112211222  378889999


Q ss_pred             CCCCCCC-ceEEEEEeCC
Q 035915          315 TQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       315 ~l~G~P~-GiG~L~Vr~~  331 (344)
                      . ||.|. .+|.++..++
T Consensus       311 ~-fg~~G~RlG~i~~~~~  327 (521)
T TIGR03801       311 Y-FGATGWRLGTIALHKD  327 (521)
T ss_pred             h-ccCchhhhhhhhcCch
Confidence            9 88662 3898887654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=97.68  E-value=0.00073  Score=68.31  Aligned_cols=190  Identities=12%  Similarity=0.063  Sum_probs=113.0

Q ss_pred             cccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC
Q 035915          131 RTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG  208 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e  208 (344)
                      .|.++.+.......-|..+.|.-..+.....++.++.|.|.  ++++ +|.-|.||.+|+-....++ +.+||+|+.. |
T Consensus        48 fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~-eVlVT~GA~~ai~~~~~~l-~~~GDeVii~-e  124 (420)
T KOG0257|consen   48 FVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDD-EVLVTAGANEAISSALLGL-LNPGDEVIVF-E  124 (420)
T ss_pred             HHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcc-cEEEecCchHHHHHHHHHH-cCCCCEEEEe-c
Confidence            44444444333332222223333444556677778887774  3433 7999999999998666665 5789996522 2


Q ss_pred             cCHHHHHHHHHcCCcEEEEEeCC-------CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---HH
Q 035915          209 EELDYVREFASFKESKVILAPEA-------WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---SE  276 (344)
Q Consensus       209 H~~~~ir~la~~~G~kV~~vp~~-------~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a~  276 (344)
                      ---++--...+-.|.+.+.+|..       ..+..+|.++|+..+++     +|+++.+..-+|  |.+++=+++   ++
T Consensus       125 P~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-----kTk~Ii~ntPhNPtGkvfsReeLe~ia~  199 (420)
T KOG0257|consen  125 PFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-----KTKAIILNTPHNPTGKVFSREELERIAE  199 (420)
T ss_pred             CcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC-----CccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            00111111112247777777655       34556899999999986     467777665556  999887544   43


Q ss_pred             -HHhCCcEEEecccccCc---CCccCCCCC----CCCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          277 -AHRNSWHVLLDATALVV---GEDRLNLAL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa~~---G~~~LDLs~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                       |+++|.+++.|=+=...   |..-+.+..    ...-.-+.|+=|. || -+|  +|-++..+
T Consensus       200 l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKt-f~-~TGWrlGW~igp~  261 (420)
T KOG0257|consen  200 LCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKT-FG-VTGWRLGWAIGPK  261 (420)
T ss_pred             HHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccce-ee-eeeeeeeeeechH
Confidence             58999999988653320   110011111    2245568899998 88 556  67666643

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=97.67  E-value=0.001  Score=66.83  Aligned_cols=148  Identities=11%  Similarity=0.022  Sum_probs=82.4

Q ss_pred             eEEEeCCHHHHHHHHHhhCC-C----CCC-CeEEE-cCCcC--H-HHHHHHHHcCCcEEEEEeCCCC---CCccCHHHHH
Q 035915          177 LVLFTPNYRDAMMLVGESYP-F----FRG-NFYMT-IIGEE--L-DYVREFASFKESKVILAPEAWL---DLRIKGSQLS  243 (344)
Q Consensus       177 ~VVFTsnaTeAlnlva~sl~-~----~~G-d~ivS-~~eH~--~-~~ir~la~~~G~kV~~vp~~~~---~g~i~~~~L~  243 (344)
                      .++|++++|||+..++.... +    .+| ..+++ .-.+|  . ..+ .+....+....+.|....   ...-+.++|+
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~  173 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATM-SASGKPGWDTIFAPQVPGFPKAELNDIASVE  173 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHH-hhcCCcccccCCCCCCCCceeeCCchHHHHH
Confidence            69999999999877655321 1    123 33443 33344  1 122 111111111111111100   0012467787


Q ss_pred             HHhhhcCCCCCeeEEEEeCc-cc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEcc
Q 035915          244 QYFRRKCKHTPKGLFSYPAD-IN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNL  312 (344)
Q Consensus       244 ~~l~~~~~~~~t~LVa~~av-SN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~  312 (344)
                      +.+.+     .+..|.+..+ ++ |.+.|    ++.+.+ |+++|+++++|-+|.-.|..-    .+.-...||+++++ 
T Consensus       174 ~~l~~-----~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g-  247 (395)
T PRK03715        174 KLITD-----KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG-  247 (395)
T ss_pred             HHcCC-----CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeeh-
Confidence            77753     3556666544 44 88877    766654 689999999999997213221    12223469999886 


Q ss_pred             ccCCCCCCCceEEEEEeCCCc
Q 035915          313 DNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       313 HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                       |. +|+-..+|+++++++..
T Consensus       248 -K~-lg~G~p~~av~~~~~i~  266 (395)
T PRK03715        248 -KG-IGGGVPLAALLAKAEVA  266 (395)
T ss_pred             -hh-hhCCcceEEEEEccccc
Confidence             87 66422388898888865

>PTZ00376 aspartate aminotransferase; Provisional

Probab=97.60  E-value=0.0011  Score=66.26  Aligned_cols=162  Identities=10%  Similarity=-0.099  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEE--eCCHHHHHHHHHh---hCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEE
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLF--TPNYRDAMMLVGE---SYPFFRGNFYMT-IIGEELDYVREFASFKESKV  225 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVF--TsnaTeAlnlva~---sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV  225 (344)
                      +.+.|+.|++++.      ++++  +|++  |.|+++|+.++..   .+ ..+||.++. .-.++  .....++..|+++
T Consensus        74 ~~~lR~aia~~~~~~~~~~~~~~--~v~~~~t~G~~~al~~~~~~l~~~-~~~Gd~Vlv~~P~y~--~~~~~~~~~G~~~  148 (404)
T PTZ00376         74 LQSFIEAAQKLLFGEASYALAEK--RIATVQALSGTGALRLGFEFLKRF-LPAGTTVYVSNPTWP--NHVNIFKSAGLNV  148 (404)
T ss_pred             CHHHHHHHHHHhcCCCccccccC--eEEEeeccCcchHHHHHHHHHHHh-cCCCCEEEEcCCCch--hHHHHHHHcCCce
Confidence            4568888888752      3444  6885  8999999987764   34 468998652 22222  1234456679999


Q ss_pred             EEEeCCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCcc-
Q 035915          226 ILAPEAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDR-  297 (344)
Q Consensus       226 ~~vp~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~-  297 (344)
                      +.+|... .+..++.+.+++.+...  ..+++++.++.-+|  |..++.+.+.    .|++++++++.|-+=.-.-... 
T Consensus       149 ~~v~l~~~~~~~~d~~~l~~~~~~~--~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~  226 (404)
T PTZ00376        149 KEYRYYDPKTKGLDFDGMLEDLRTA--PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDL  226 (404)
T ss_pred             eeccccCcccCCcCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCH
Confidence            9998732 23457888888887531  12356666665556  9999986553    3578999999998743100000 


Q ss_pred             -------CCCCCCC-CcEEEEccccCCCCCCC-ceEEEE
Q 035915          298 -------LNLALHR-PDFVLCNLDNTQNAQPS-KITCLL  327 (344)
Q Consensus       298 -------LDLs~l~-~DFvv~S~HK~l~G~P~-GiG~L~  327 (344)
                             ..+.... -=+++.|+=|. |+.|. .+|.++
T Consensus       227 ~~~~~~~~~~~~~~~~vi~i~SfSK~-~~~~GlRvG~~~  264 (404)
T PTZ00376        227 DKDAYAIRLFAERGVEFLVAQSFSKN-MGLYGERIGALH  264 (404)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEeCCCc-ccccccccceEE
Confidence                   1111111 12888999999 88552 488874

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.58  E-value=0.0019  Score=67.87  Aligned_cols=164  Identities=15%  Similarity=0.038  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEE-eCCCC-
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILA-PEAWL-  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~v-p~~~~-  233 (344)
                      ..+.+|.+.+|+.+|++.   .-..+.|+|.|+..+..+. ..+||.|+-.-.-|......+.- .|+.=+++ |...+ 
T Consensus        70 G~i~eAqe~aA~~fgAd~---tyFvvNGTS~ank~vi~a~-~~~GD~VLvdRN~HKSi~~glil-aGa~Pvyl~p~~np~  144 (557)
T COG1982          70 GPIKEAQELAARVFGADH---TYFVVNGTSTANKAVINAV-LTPGDKVLVDRNCHKSIHHGLIL-AGATPVYLEPSRNPL  144 (557)
T ss_pred             ccHHHHHHHHHHHhCCCc---eEEEECCccHHHHHHHHhh-cCCCCEEEecCCccHHHHHHHHH-cCCceEEecCCCCcc
Confidence            357889999999999963   3566688888888888876 57899987665544221222222 36665554 32211 


Q ss_pred             ---CCccCHHHHHHHhhhcCCCCCe-eEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCC----CC-
Q 035915          234 ---DLRIKGSQLSQYFRRKCKHTPK-GLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN----LA-  301 (344)
Q Consensus       234 ---~g~i~~~~L~~~l~~~~~~~~t-~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD----Ls-  301 (344)
                         -+.|+.+.+.+.+.+..   .. +++.++ ..|  |+.+++++|.+ ++..++++++|-+|-+ -...-+    .. 
T Consensus       145 ~gi~ggI~~~~~~~~l~~~~---~~~k~~vit-npTYdGv~~n~~~i~~~~~~~~a~v~~deah~~-~~~~~~~l~~~~~  219 (557)
T COG1982         145 YGIIGGIPLETFKEALLAHP---DAEKLAVIT-NPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPA-HFDFSPMLPESAL  219 (557)
T ss_pred             ccccCCCCHHHHHHHHHhCh---hhheeEEEe-cCccceEeecHHHHHHHHhhcCceEEhhhcCcc-cccccccCcchhh
Confidence               24578888887765431   23 556655 334  99999987764 6889999999999876 322211    11 


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      +.+.||++=|.||. +++=+-...|-++.
T Consensus       220 ~~~~~~~tqS~HK~-l~alSQaS~iHv~~  247 (557)
T COG1982         220 NGGADFVTQSTHKL-LAALSQASMIHVKD  247 (557)
T ss_pred             hcCceEEEechhhh-hhhhhhhHHHhhCC
Confidence            25799999999998 66555555666664

>PLN02624 ornithine-delta-aminotransferase

Probab=97.55  E-value=0.0023  Score=65.90  Aligned_cols=164  Identities=10%  Similarity=0.089  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCC-C----CCC-eEEEcCC-cC--HHHHHHHH----
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPF-F----RGN-FYMTIIG-EE--LDYVREFA----  218 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~-~----~Gd-~ivS~~e-H~--~~~ir~la----  218 (344)
                      .....+.-++++++++.  +  .+.|+.+++||+..++.   .+.. .    ++. .+++..+ +|  ......+.    
T Consensus       116 ~~~~~~la~~L~~~~~~--~--~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~  191 (474)
T PLN02624        116 NDKFPEFAEYLTSMFGY--D--MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNE  191 (474)
T ss_pred             CHHHHHHHHHHHhhcCC--C--eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcc
Confidence            34556667778888764  2  69999999998765543   2100 1    133 3444322 33  11111110    


Q ss_pred             HcCC-----cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEe
Q 035915          219 SFKE-----SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       219 ~~~G-----~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                      ...+     ..+..+|.+      +.+.|++.+...  ..++..|.+..+.|  |.++|    ++.|.+ |+++|+++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~--~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~  263 (474)
T PLN02624        192 ATRGFGPLLPGHLKVDFG------DLDALEKIFEED--GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIA  263 (474)
T ss_pred             ccccCCCCCCCceEeCCC------CHHHHHHHHHhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0011     112233332      456788888532  13466666654443  99999    766654 6899999999


Q ss_pred             ccccc-CcCC----ccCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          287 DATAL-VVGE----DRLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa-~~G~----~~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |-+|. + |.    ...+.....+|++++|  |- +|+. -.+|++++++++.+
T Consensus       264 DEv~tG~-GrtG~~~a~~~~~i~pDiv~ls--K~-lggG~~pigav~~~~~i~~  313 (474)
T PLN02624        264 DEIQTGL-ARTGKMLACDWEEVRPDVVILG--KA-LGGGVIPVSAVLADKDVML  313 (474)
T ss_pred             eccccCc-CcCcchhhHHhcCCCCCEEEec--cc-ccCCCCcceeeeecHHHHh
Confidence            99998 4 42    1234445679999997  98 6654 34888888865543

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=97.50  E-value=0.0044  Score=62.23  Aligned_cols=191  Identities=15%  Similarity=0.082  Sum_probs=119.0

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN  201 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd  201 (344)
                      |.++ |.  .+++..+++..-.+|-+.    ...+.++....-..+--+-......|+|+++.--++.++++.+. ++||
T Consensus        37 f~~p-p~--i~~Al~~rvdhGvfGY~~----~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd  108 (388)
T COG1168          37 FPTP-PE--IIEALRERVDHGVFGYPY----GSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGD  108 (388)
T ss_pred             CCCC-HH--HHHHHHHHHhcCCCCCCC----CCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCC
Confidence            4454 43  333444444444455441    11123355555555544443222269999999999999999985 6888


Q ss_pred             eEE--EcCCcC-HHHHHHHHHcCCcEEEEEeCCCCCCcc--CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH
Q 035915          202 FYM--TIIGEE-LDYVREFASFKESKVILAPEAWLDLRI--KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI  274 (344)
Q Consensus       202 ~iv--S~~eH~-~~~ir~la~~~G~kV~~vp~~~~~g~i--~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I  274 (344)
                      .|+  ++.-++ .+.    -+..|-++...|.-..+++.  |.++|++.|...    +++|+.+..-.|  |++..-+++
T Consensus       109 ~Vvi~tPvY~PF~~~----i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~----~vkl~iLCnPHNP~Grvwt~eeL  180 (388)
T COG1168         109 GVVIQTPVYPPFYNA----IKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDE----RVKLFILCNPHNPTGRVWTKEEL  180 (388)
T ss_pred             eeEecCCCchHHHHH----HhhcCcEEEeccccccCCcEEecHHHHHHHHhcC----CccEEEEeCCCCCCCccccHHHH
Confidence            853  555444 333    24468889888876555655  999999998752    456666654445  999888655


Q ss_pred             H----HHHhCCcEEEecccccCc---CCccCCCCCCC-----CcEEEEccccCCCCCCCceE--EEEEeC
Q 035915          275 S----EAHRNSWHVLLDATALVV---GEDRLNLALHR-----PDFVLCNLDNTQNAQPSKIT--CLLIRK  330 (344)
Q Consensus       275 a----~ar~~g~~vlvDAaQa~~---G~~~LDLs~l~-----~DFvv~S~HK~l~G~P~GiG--~L~Vr~  330 (344)
                      .    .|+++|+.|+.|=.|+-.   |+..+.+..+.     --+.+.|.-|. |.-| |+.  .+++.+
T Consensus       181 ~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKt-FNla-GL~~a~~Ii~n  248 (388)
T COG1168         181 RKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKT-FNLA-GLKCAYIIISN  248 (388)
T ss_pred             HHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccc-ccch-hhhheeEEecC
Confidence            4    358999999999999832   43333333222     33677777998 7755 544  444444

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=97.48  E-value=0.0055  Score=61.02  Aligned_cols=165  Identities=12%  Similarity=0.021  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------CCCCC-eEEEcC-CcCHHHHHHHHH-----
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------FFRGN-FYMTII-GEELDYVREFAS-----  219 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~~~Gd-~ivS~~-eH~~~~ir~la~-----  219 (344)
                      .....+..+++++++|.  +  .++|++++++|+..+.....        ...|+ .|++.- .||-..+..+..     
T Consensus        78 ~~~~~~l~~~l~~~~~~--~--~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~  153 (401)
T TIGR01885        78 NDVFGEFAEYVTKLFGY--D--KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPD  153 (401)
T ss_pred             CHHHHHHHHHHHhhcCC--C--EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcc
Confidence            44567778889999874  2  69999999999877665421        11333 455443 345111111111     


Q ss_pred             ---cCC---cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHHH-HHhCCcEEEe
Q 035915          220 ---FKE---SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       220 ---~~G---~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                         ..+   ..+..+|.+      +.++|++.+...  ..+...|.+- ..++ |.+.|    ++.|.+ ++++|+++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~--~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~  225 (401)
T TIGR01885       154 SRTNFGPYVPGFKKIPYN------NLEALEEALEDH--GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIA  225 (401)
T ss_pred             cccccCCCCCCceEeCCC------CHHHHHHHHHhc--CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence               011   112223321      457788877532  1234455553 3343 99998    766654 6899999999


Q ss_pred             cccccCcCCc--c--CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          287 DATALVVGED--R--LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa~~G~~--~--LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |-+|.-.|..  .  ++...+.+|+++++  |. +++. --+|+++.++++.+
T Consensus       226 DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~-l~~g~~~ig~v~~~~~i~~  275 (401)
T TIGR01885       226 DEIQTGLGRTGKLLCVDHENVKPDIVLLG--KA-LSGGVYPVSAVLADDDVML  275 (401)
T ss_pred             echhhCCCccchhhHHhhcCCCCCEEEee--cc-ccCCCCCcEEEEEcHHHHh
Confidence            9998521311  1  22334679999887  98 6642 12788887766543

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK09275 aspartate aminotransferase; Provisional

Probab=97.46  E-value=0.0025  Score=66.90  Aligned_cols=147  Identities=10%  Similarity=0.015  Sum_probs=90.3

Q ss_pred             CeEEEeCCHHHHHHHHHhhC----CCCCCCeEEEc-CCcCHHHHHHHHHc--CCcEEEEEeCCCC-CCccCHHHHHHHhh
Q 035915          176 YLVLFTPNYRDAMMLVGESY----PFFRGNFYMTI-IGEELDYVREFASF--KESKVILAPEAWL-DLRIKGSQLSQYFR  247 (344)
Q Consensus       176 y~VVFTsnaTeAlnlva~sl----~~~~Gd~ivS~-~eH~~~~ir~la~~--~G~kV~~vp~~~~-~g~i~~~~L~~~l~  247 (344)
                      .+|+.|+|+|+|+..+..++    -+.+||+|+.. -.+. . ....++-  .|++++.++.+.. +-.++.++|+++++
T Consensus       162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~-~-Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~  239 (527)
T PRK09275        162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFT-P-YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD  239 (527)
T ss_pred             CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChH-H-HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC
Confidence            37999999999999888763    25789986532 2222 1 1222222  2556666654322 23578888988776


Q ss_pred             hcCCCCCeeEEEEeCccc--cccccHHHHH----HHH--hCCcEEEecccccCcCCccCCCCCC--CCcEEEEccccCCC
Q 035915          248 RKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAH--RNSWHVLLDATALVVGEDRLNLALH--RPDFVLCNLDNTQN  317 (344)
Q Consensus       248 ~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar--~~g~~vlvDAaQa~~G~~~LDLs~l--~~DFvv~S~HK~l~  317 (344)
                      +     +++++.+..-+|  |.+++-+.+.    .|+  +++++++.|-+-.-.......+...  .--+++.|+=|. |
T Consensus       240 ~-----~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~-f  313 (527)
T PRK09275        240 P-----SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKY-F  313 (527)
T ss_pred             C-----CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhh-c
Confidence            4     356666554455  9999975443    243  3599999998754211011111111  124778899999 8


Q ss_pred             CCCCc--eEEEEEeCC
Q 035915          318 AQPSK--ITCLLIRKK  331 (344)
Q Consensus       318 G~P~G--iG~L~Vr~~  331 (344)
                      |.| |  +|.++..++
T Consensus       314 ~mt-G~RlG~i~~~~~  328 (527)
T PRK09275        314 GAT-GWRLGVIALHED  328 (527)
T ss_pred             cCc-HhHHhhhhcCch
Confidence            866 5  798887765

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.44  E-value=0.0053  Score=62.34  Aligned_cols=149  Identities=12%  Similarity=0.020  Sum_probs=98.6

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC-cC--HHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG-EE--LDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e-H~--~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..-++++.+=|+..   .++|-| +-.|+..+..++ +++||+++..-+ +.  ......+.++.|++|.+++...    
T Consensus        67 ~lE~~~a~LEg~~~---~~afsS-GmaAI~~~~l~l-l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~----  137 (396)
T COG0626          67 ALEEALAELEGGED---AFAFSS-GMAAISTALLAL-LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGD----  137 (396)
T ss_pred             HHHHHHHHhhCCCc---EEEecC-cHHHHHHHHHHh-cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCC----
Confidence            34445666667741   355554 455777666555 567999764333 33  2233445567899999876432    


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC--ccCCCCCCCCcEEEEc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE--DRLNLALHRPDFVLCN  311 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~--~~LDLs~l~~DFvv~S  311 (344)
                        .+.+.+.+.+    .+|++|-+-.-+|  -.++||..|++ +|++|+.++||-+=+- |.  .||+   +++|+++=|
T Consensus       138 --~~~~~~~~~~----~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat-P~~q~PL~---~GaDIVvhS  207 (396)
T COG0626         138 --DEALEAAIKE----PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT-PVLQRPLE---LGADIVVHS  207 (396)
T ss_pred             --hHHHHHHhcc----cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-ccccChhh---cCCCEEEEe
Confidence              2345555542    1478888877777  99999988865 6999999999999886 43  3444   579999999


Q ss_pred             cccCCCCCCCc-eEEEEE
Q 035915          312 LDNTQNAQPSK-ITCLLI  328 (344)
Q Consensus       312 ~HK~l~G~P~G-iG~L~V  328 (344)
                      +=|. ++|=.. +|.+++
T Consensus       208 aTKy-l~GHsDvl~G~v~  224 (396)
T COG0626         208 ATKY-LGGHSDVLGGVVL  224 (396)
T ss_pred             cccc-ccCCcceeeeEEe
Confidence            9999 775432 455555

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.38  E-value=0.0018  Score=65.28  Aligned_cols=171  Identities=12%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCC---CCCCC-eEEE-cCCcC--HHHHHHHHHcC----
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYP---FFRGN-FYMT-IIGEE--LDYVREFASFK----  221 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~---~~~Gd-~ivS-~~eH~--~~~ir~la~~~----  221 (344)
                      ....+..+++++.+...  ...|.|+.++|||+..+..   .+.   -..|. .|++ .-.+|  ......+....    
T Consensus        85 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~  162 (423)
T PRK05964         85 EPAERLAQRLVALTPGG--LDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHA  162 (423)
T ss_pred             HHHHHHHHHHHHhCCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccc
Confidence            33445566677776422  1279999999998775443   221   01233 4553 33344  22221111100    


Q ss_pred             ---C--cEEEEEeCCCCC-CccCHHHHHHHhhhcCCCCCee-EEEEeC-ccc-ccccc----HHHHH-HHHhCCcEEEec
Q 035915          222 ---E--SKVILAPEAWLD-LRIKGSQLSQYFRRKCKHTPKG-LFSYPA-DIN-GTRYS----MHWIS-EAHRNSWHVLLD  287 (344)
Q Consensus       222 ---G--~kV~~vp~~~~~-g~i~~~~L~~~l~~~~~~~~t~-LVa~~a-vSN-G~i~P----l~~Ia-~ar~~g~~vlvD  287 (344)
                         +  ..+..+|....+ ...+.+.|++.+...  ..+.. ++.-+. +.+ |.+.|    ++.+. .|+++|+++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~--~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D  240 (423)
T PRK05964        163 LYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH--AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD  240 (423)
T ss_pred             cccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC--CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence               0  112334432211 111256677777532  12343 444453 334 77775    44444 368999999999


Q ss_pred             cccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          288 ATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       288 AaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      -+|. + |..    ..+.....||+++++  |+ +++. -.+|+++.+++..+
T Consensus       241 Ev~tg~-gr~G~~~a~~~~~v~pDi~~~~--K~-l~gG~~p~~av~~~~~i~~  289 (423)
T PRK05964        241 EIATGF-GRTGTLFACEQAGVSPDIMCLS--KG-LTGGYLPLAATLCTAEIFE  289 (423)
T ss_pred             chhhCC-CcCcchhHHHhcCCCCCeeeee--hh-hhcCcccceEEEEcHHHHH
Confidence            9996 3 421    113334679999887  99 6554 35888888877554

>PLN02672 methionine S-methyltransferase

Probab=97.33  E-value=0.0048  Score=69.52  Aligned_cols=167  Identities=13%  Similarity=0.074  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHcCCCCC-CCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCC-CC
Q 035915          158 EIQARNKVLKHCGLPDD-EYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAW-LD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~-ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~-~~  234 (344)
                      .+..++.+++..|++.+ +.+|++|+|+++++.++..++ ..+||.++.. -.+.  .....++..|++++.+|.+. .+
T Consensus       736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aL-l~pGD~VLVp~PtY~--~Y~~~a~~~Ga~vv~Vpl~~e~g  812 (1082)
T PLN02672        736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCC-VQEGGTLCFPAGSNG--TYVSAAKFLKANFRRIPTKSSDG  812 (1082)
T ss_pred             HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCChH--HHHHHHHHcCCEEEEEecccccC
Confidence            46677888888888653 237999999999999888877 3689986532 2222  12334556799999999863 23


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeE-EEEeCcc-ccccccHHHHHH----HHhCCcEEEecccccCc---CCc--cCCCC--
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGL-FSYPADI-NGTRYSMHWISE----AHRNSWHVLLDATALVV---GED--RLNLA--  301 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~L-Va~~avS-NG~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~---G~~--~LDLs--  301 (344)
                      -.++.++|++++++..   +..+ ++.|..| +|.+++.+++.+    |+++++++++|-+.+-.   +..  ..++.  
T Consensus       813 f~lD~d~Le~al~~~~---~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~  889 (1082)
T PLN02672        813 FKLTAKTLASTLETVK---KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSI  889 (1082)
T ss_pred             CCCCHHHHHHHhccCC---CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhH
Confidence            4677888988885421   1223 3334323 399999966543    47889999999988620   211  11111  


Q ss_pred             --CCC---C---cEEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          302 --LHR---P---DFVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       302 --~l~---~---DFvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                        ...   .   =+++.|+=|. |+.|. .+|.++..+.
T Consensus       890 l~~~~~~sks~nVIvL~SfSKk-f~lpGLRIGylIap~~  927 (1082)
T PLN02672        890 LSRLKSSNPSFAVALLGGLSTE-LLSGGHEFGFLALNDS  927 (1082)
T ss_pred             HHHhccccCCceEEEEeCcHHh-hccHHHHheeEEeCCH
Confidence              111   1   1455688887 77663 3899988544

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0014  Score=66.78  Aligned_cols=195  Identities=16%  Similarity=0.136  Sum_probs=120.5

Q ss_pred             ccccchHHHHHHhhccC-CCC---hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHH----h-hCCC--C
Q 035915          130 DRTQLEPSRLLDILTKK-SSF---PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVG----E-SYPF--F  198 (344)
Q Consensus       130 s~v~~~~~~L~~~L~gn-ss~---~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva----~-sl~~--~  198 (344)
                      +.+..+...+.+..+.| -.|   +.--.  +.++.-.+.-+..|-+.. -+=+|++|++-+..-+.    . .+|-  .
T Consensus       113 D~~~Lag~wlT~t~Ntn~~TYEiAPvF~l--mE~~vl~km~~ivGw~~~-~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~  189 (510)
T KOG0629|consen  113 DPIGLAGEWLTSTANTNMFTYEIAPVFVL--MEEEVLAKMREIVGWEEG-GDGIFAPGGSISNMYAMNCARYKNFPEVKT  189 (510)
T ss_pred             CHHHHHHHHHHhccCCCCceEEecceEEe--ehHHHHHHHHHHhCCCCC-CCceecCCchhHHHHHHHHHHhhcCchhhh
Confidence            35667777777765555 122   11111  234445555566677653 24599998887643222    1 1231  1


Q ss_pred             CCC-----eEE-EcCCcCHHHHHHHHHcCC---cEEEEEeCCCCCCccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--c
Q 035915          199 RGN-----FYM-TIIGEELDYVREFASFKE---SKVILAPEAWLDLRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--G  266 (344)
Q Consensus       199 ~Gd-----~iv-S~~eH~~~~ir~la~~~G---~kV~~vp~~~~~g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G  266 (344)
                      .|-     -++ ++-+-| -.+...|+-.|   -.++.++.+. .|.+..++|++.+-.. .+...+-+|+.++-++  |
T Consensus       190 ~Gm~~~p~lilFtSeesH-YSi~kaAa~lg~gtd~c~~v~t~e-~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~G  267 (510)
T KOG0629|consen  190 KGMFALPPLILFTSEESH-YSIKKAAAFLGLGTDHCIKVKTDE-RGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLG  267 (510)
T ss_pred             hhhhcCCcEEEEecccch-hhHHHHHHHhccCCceeEEecccc-cCccchHHHHHHHHHHHhcCCCCeEEEecCCceeee
Confidence            222     233 332222 22444444344   4677788876 5899999999887532 1112245777777666  9


Q ss_pred             ccccHHHHHH-HHhCCcEEEecccccCcCCccCC------CCC-CCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          267 TRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN------LAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       267 ~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD------Ls~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ..=||+.|+. |++++.++|||||-.- |.. +.      |+- -++|-++.++||+ .|+|--+++++.|.+-
T Consensus       268 AFDdL~~iadiC~k~~lWmHvDAAwGG-glL-mS~k~R~kl~Giera~SvtwnpHK~-~gaplqCsa~l~r~~g  338 (510)
T KOG0629|consen  268 AFDDLNGIADICEKHKLWMHVDAAWGG-GLL-MSRKHRHKLTGIERANSVTWNPHKL-MGAPLQCSAFLTREEG  338 (510)
T ss_pred             ccCcHHHHHHHHHhcCEEEEeeccccc-ccc-cChhhHhhccCccccCceeecHHHh-hcCcchhhHHHHHHHH
Confidence            9999988875 6889999999997654 322 22      111 3689999999999 9999999998888654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=97.27  E-value=0.0047  Score=60.87  Aligned_cols=164  Identities=10%  Similarity=-0.015  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEEE-cCCcCHHHHHHH--HHc----C--CcEEEEE
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYMT-IIGEELDYVREF--ASF----K--ESKVILA  228 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~ivS-~~eH~~~~ir~l--a~~----~--G~kV~~v  228 (344)
                      .+.+..+++.|+..++ ..++|++++|||+..+.... .+..++.+++ ...+|-..+..+  ...    .  +..+..+
T Consensus        69 ~~~~~~la~~l~~~~~-~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~  147 (375)
T PRK04260         69 NSLQEEVAQKLIGDKD-YLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHF  147 (375)
T ss_pred             CHHHHHHHHHHhcCcC-CEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCe
Confidence            4567778876644433 24789999999988655432 1233455553 444441111111  100    0  1111001


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHH-HHHhCCcEEEecccccCcCCcc--C-
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWIS-EAHRNSWHVLLDATALVVGEDR--L-  298 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~~~--L-  298 (344)
                      +...   .-+.+.+++.+.+     ++.+|.+..++|  |++.|    ++.+. .++++|+++++|.+|.-.|...  + 
T Consensus       148 ~~~~---~~dl~~l~~~l~~-----~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~  219 (375)
T PRK04260        148 SYAI---FNDLNSVKALVNK-----NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYA  219 (375)
T ss_pred             EEeC---CCCHHHHHHhcCC-----CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhh
Confidence            1000   1256777777643     356777765553  88876    55554 4688999999999985213221  1 


Q ss_pred             -CCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          299 -NLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       299 -DLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                       ....+.+|.+  ++-|. ++ | --+|+++++++..+.
T Consensus       220 ~~~~~~~pdi~--t~sK~-l~-~G~~ig~~~~~~~~~~~  254 (375)
T PRK04260        220 FEHYGIEPDIF--TLAKG-LA-NGVPVGAMLAKSSLGGA  254 (375)
T ss_pred             hHhhCCCCCEE--Eeccc-cc-CCcceEEEEEcHHHHhh
Confidence             1234678965  67898 76 3 128999998765543

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=97.25  E-value=0.012  Score=58.60  Aligned_cols=158  Identities=9%  Similarity=0.011  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---CCC---CCCC-eEE-EcCCcC-H-HHHHHHH------H--
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---YPF---FRGN-FYM-TIIGEE-L-DYVREFA------S--  219 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l~~---~~Gd-~iv-S~~eH~-~-~~ir~la------~--  219 (344)
                      ..+.-++++++++.  +  .+.|+.+++||+..+..-   +..   ..+. .++ ..-.+| . .....+.      .  
T Consensus        84 ~~~l~~~l~~~~~~--~--~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~  159 (403)
T PRK05093         84 ALRLAKKLIDATFA--E--RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF  159 (403)
T ss_pred             HHHHHHHHHhhCCC--C--EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence            34666777777654  2  699999999987665442   210   1222 343 333344 1 1111110      0  


Q ss_pred             -cCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHH-HHHhCCcEEEeccccc
Q 035915          220 -FKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWIS-EAHRNSWHVLLDATAL  291 (344)
Q Consensus       220 -~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa  291 (344)
                       .....+..+|.+      |.+++++.+.+     +++.|.+. ..++ |.+.|    ++.|. .|+++|+++++|=+|.
T Consensus       160 ~~~~~~~~~~~~~------d~~~l~~~l~~-----~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~  228 (403)
T PRK05093        160 GPKPADITHVPFN------DLAAVKAVIDD-----HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT  228 (403)
T ss_pred             CCCCCCcEEeCCC------CHHHHHHHhcC-----CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence             001123333332      45778877753     35555554 3334 55433    44444 4689999999999987


Q ss_pred             CcCCcc----CCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          292 VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       292 ~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      -.|...    .......+|++++|  |. ++ | |  +|+++.++++.+.
T Consensus       229 g~g~~g~~~~~~~~~~~pdi~s~s--K~-l~-~-G~rig~vv~~~~i~~~  273 (403)
T PRK05093        229 GMGRTGDLFAYMHYGVTPDILTSA--KA-LG-G-GFPIGAMLTTAEIASH  273 (403)
T ss_pred             CCCCCccchhhhhcCCCCCEEEec--cc-cc-C-CcceEEEEEcHHHHhh
Confidence            214321    12234568987765  98 76 5 6  9999988776443

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=97.24  E-value=0.0039  Score=61.19  Aligned_cols=158  Identities=9%  Similarity=-0.005  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcC---HHHHHHHHHcCCc---------EEE
Q 035915          161 ARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYM-TIIGEE---LDYVREFASFKES---------KVI  226 (344)
Q Consensus       161 AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~---~~~ir~la~~~G~---------kV~  226 (344)
                      .+..+++.++.......++|++++++|+..+.... .+..++.++ ..-.+|   ...+. +......         .+.
T Consensus        72 ~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~-~~~~~~~~~~~~~~~~~~~  150 (377)
T PRK02936         72 LQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMS-ATGQEKIKEGFGPLLPGFT  150 (377)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhh-ccCCccccccCCCCCCCce
Confidence            44455555543211116999999999988776632 122224454 333444   12222 1100000         112


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHH-HHHhCCcEEEecccccCcCCc--c
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWIS-EAHRNSWHVLLDATALVVGED--R  297 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~~--~  297 (344)
                      .+|.+      +.++|++.+.+     +++.|.+..+.+  |...+    ++.|. .|+++|+++++|-+|.-.|..  .
T Consensus       151 ~~~~~------d~~~l~~~~~~-----~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~  219 (377)
T PRK02936        151 HVPFN------DIKALKEVMNE-----EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL  219 (377)
T ss_pred             EeCCC------CHHHHHHhccC-----CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence            22221      46778877754     366777755443  55533    55554 368999999999998621321  1


Q ss_pred             CC--CCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          298 LN--LALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       298 LD--Ls~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      +.  .....+|.+  ++-|. ++ + |  +|+++.+++..+.
T Consensus       220 ~~~~~~~~~~di~--t~sK~-l~-~-G~~ig~v~~~~~~~~~  256 (377)
T PRK02936        220 FAYEQFGLDPDIV--TVAKG-LG-N-GIPVGAMIGKKELGTA  256 (377)
T ss_pred             hHHHhhCCCCcEE--EEccc-cc-C-CCccEEEEEcHHHHhh
Confidence            11  123457865  56898 77 4 5  8888887765543

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=97.12  E-value=0.0096  Score=61.04  Aligned_cols=157  Identities=11%  Similarity=0.040  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHH---HHHHHHhhCCCCCCCe-EEEcCCcC--HHHHHHHHHcCCcEEEEEeC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRD---AMMLVGESYPFFRGNF-YMTIIGEE--LDYVREFASFKESKVILAPE  230 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTe---Alnlva~sl~~~~Gd~-ivS~~eH~--~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+-+-...|+++.|.+-.  +.-+-.++|.   |+.++.+... ++++. +++..-|+  ...++..+...|++|+.+|.
T Consensus       111 ~lfe~Qs~i~eLTGmdva--NaSlyd~atA~aEa~~ma~r~~~-~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~  187 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVA--NASLYDGATAAAEAMLMAVRATK-RKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPL  187 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE---SEBSSCCHHHHHHHHHHHHHHT-T---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-B
T ss_pred             HHHHHHHHHHHhhCCCcc--CCCCCChhHHHHHHHHHHHHhcc-cCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecc
Confidence            467888999999998521  1122246665   4444443322 22345 55666677  33456667778999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCccC-CCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL-NLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L-DLs~l~~DF  307 (344)
                      +.. +..+        +     .++.-|.++.-|+ |.+-+++.|.. +|++|+++++ ++-.. ...-+ .-.++++|.
T Consensus       188 ~~~-~~~d--------~-----~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~~-aL~~l~~Pge~GADI  251 (429)
T PF02347_consen  188 DED-GTTD--------D-----DDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADPN-ALGGLKSPGEYGADI  251 (429)
T ss_dssp             BTT-CSB---------S-----TTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGCC-GCCTC--GGGGT-SE
T ss_pred             ccc-CCcc--------c-----cCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCHH-HHhCcCChhhcCccE
Confidence            753 4333        1     1354555554444 99999987765 6999999887 54443 21111 123579999


Q ss_pred             EEEccccC-----CCCCCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNT-----QNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~-----l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++.+ ||-     -|||| |.|++-+|++...
T Consensus       252 ~vg~-~Q~fg~p~~~GGP-~~G~~a~~~~l~r  281 (429)
T PF02347_consen  252 VVGE-HQTFGIPMGFGGP-GAGFFAVREDLVR  281 (429)
T ss_dssp             EEEC-CTTTT---CCC-S---EEEEE-GGGGG
T ss_pred             EeeC-CCCCcccCCCCCC-CeeeEEEhhhhhh
Confidence            9666 664     26778 8999999987544

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=97.09  E-value=0.0024  Score=64.69  Aligned_cols=171  Identities=13%  Similarity=0.088  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC-cCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG-EELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e-H~~~~ir~la~~~G~kV~~v  228 (344)
                      +-.-|+.+|+|+.        .+|+  .||.|.|+|.++++++-.+. .+|+.++...- ++ -.-|.+.-+.|++++.+
T Consensus       123 l~~frqa~A~Fm~~~r~~~v~fdP~--~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~-gfdrdl~~rTgveivpv  198 (471)
T KOG0256|consen  123 LPSFRQAVAEFMERARGNRVKFDPE--RVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYP-GFDRDLRWRTGVEIVPV  198 (471)
T ss_pred             chHHHHHHHHHHHHHhCCCCccCcc--ceEEecccchhhHHHHHHhc-CCCceeeecCCCCC-cccccceeccCceEEEE
Confidence            3456777787764        2455  79999999999999988875 48888653322 22 11133333579999888


Q ss_pred             eCCCCCC-ccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHHH-H---HHhCCcEEEecccccCc--CCccC
Q 035915          229 PEAWLDL-RIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWIS-E---AHRNSWHVLLDATALVV--GEDRL  298 (344)
Q Consensus       229 p~~~~~g-~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia-~---ar~~g~~vlvDAaQa~~--G~~~L  298 (344)
                      .....++ +|+.+.|++++.+..+ ..+.+=+.++--+|  |+.++=+.+. .   +.++++++++|=.=+..  +...+
T Consensus       199 ~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F  278 (471)
T KOG0256|consen  199 HCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEF  278 (471)
T ss_pred             EeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCc
Confidence            7755443 7888888887764222 12345455554567  9999987554 2   37899999999654430  11100


Q ss_pred             -CC---C-C--CCCc--EEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          299 -NL---A-L--HRPD--FVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       299 -DL---s-~--l~~D--Fvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                       .+   . .  .++|  -++.|.-|= ||-|. .+|++|-.++-.
T Consensus       279 ~Sv~ev~~~~~~~~~rvHivyslSKD-~GlpGfRvGviYS~ne~V  322 (471)
T KOG0256|consen  279 RSVLEVRKDPHLDPDRVHIVYSLSKD-FGLPGFRVGVIYSNNEDV  322 (471)
T ss_pred             eEHHHHhhccccCCCcEEEEEEeccc-cCCCceEEEEEEecChHH
Confidence             00   0 1  1334  578889998 89883 489999866543

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=97.02  E-value=0.0076  Score=61.21  Aligned_cols=151  Identities=11%  Similarity=0.155  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHH---HHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRD---AMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTe---Alnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      .+..+.+|++=.-+.   -++|+|.--.   -+.+++.-+   +|.+|.|+-++|...+.-. +..++.-....-+    
T Consensus       219 v~LE~eLA~LHqK~a---ALlFsSCfVANDstLftLak~l---pgcei~SD~gNHASMI~GI-rns~v~K~IFrHN----  287 (570)
T KOG1360|consen  219 VRLEAELADLHQKEA---ALLFSSCFVANDSTLFTLAKKL---PGCEIFSDEGNHASMIQGI-RNSRVPKHIFRHN----  287 (570)
T ss_pred             hhHHHHHHHHhcCcc---eeeeeeeeeccchHHHHHHHHC---CCcEEeccccchHHHHHHh-hhcCCcceeeccC----
Confidence            344556777765443   4888874322   255666665   5889999888774333322 2234433333322    


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCC---CC-----CCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLN---LA-----LHR  304 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LD---Ls-----~l~  304 (344)
                        |.+.|+++|..- .....++|+|-.+-.  |.+-||++|. .+|++|+++++|-+|++ |..--.   +.     ...
T Consensus       288 --D~~hL~~lL~~~-~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAV-GlYG~rGaGvgerdGvm~k  363 (570)
T KOG1360|consen  288 --DLDHLEQLLQSS-PKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAV-GLYGPRGAGVGERDGVMHK  363 (570)
T ss_pred             --CHHHHHHHHHhC-CCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhh-ccccCCCCCccccCCcchh
Confidence              456777777642 123578999987653  9999998775 57999999999999999 864211   21     146


Q ss_pred             CcEEEEccccCCCCCCCceEEEEE
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      +|.++..+-|- ||   -+|.-+.
T Consensus       364 vDiIsGTLgKa-fG---cVGGYIA  383 (570)
T KOG1360|consen  364 VDIISGTLGKA-FG---CVGGYIA  383 (570)
T ss_pred             hhhcccchhhh-cc---cccceeh
Confidence            89999999999 88   3555443

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0087  Score=58.92  Aligned_cols=142  Identities=14%  Similarity=0.009  Sum_probs=96.3

Q ss_pred             HHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHH----------HHcCCcEEEEEeCCCCC
Q 035915          165 VLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREF----------ASFKESKVILAPEAWLD  234 (344)
Q Consensus       165 IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~l----------a~~~G~kV~~vp~~~~~  234 (344)
                      -|+.||+...--..-|. ++|+|+..++.++ +++||++++..+-+.+.+.+.          .+..|++.+.+|+.. +
T Consensus        74 yA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~-LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~-~  150 (416)
T COG4100          74 YAQVFGAEAALVRPQII-SGTHAIACALFGI-LRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTA-D  150 (416)
T ss_pred             HHHHhccccceeeeeee-cchhHHHHHHHhc-cCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeeccccc-C
Confidence            46788886432123344 5688999988887 689999887777664444332          234578888899886 5


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccc--ccHHHHHHH----Hh--CCcEEEecccccCcCCccCCCCCCCC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTR--YSMHWISEA----HR--NSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i--~Pl~~Ia~a----r~--~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      |.||.+.+...+++     +|+|+.+.--.. +-+  +++++|++.    |+  .++.++||-+=.= =.....-...++
T Consensus       151 gkiD~~~v~~~i~~-----~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE-FvE~~EPt~vGa  224 (416)
T COG4100         151 GKIDIQAVKTAISD-----RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE-FVEEKEPTHVGA  224 (416)
T ss_pred             CcccHHHHHHhcCc-----cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh-hhhccCccccch
Confidence            89999999998876     589999985433 444  444666542    33  5899999975331 012222334689


Q ss_pred             cEEEEccccC
Q 035915          306 DFVLCNLDNT  315 (344)
Q Consensus       306 DFvv~S~HK~  315 (344)
                      |.+..|+=|-
T Consensus       225 DliAGSLIKN  234 (416)
T COG4100         225 DLIAGSLIKN  234 (416)
T ss_pred             hhhccceeeC
Confidence            9999999998

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=96.95  E-value=0.0073  Score=58.97  Aligned_cols=190  Identities=15%  Similarity=0.218  Sum_probs=113.8

Q ss_pred             cCCCCCC---cccccchHHHHHHhhccC------CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHH----
Q 035915          122 FGSNLPD---LDRTQLEPSRLLDILTKK------SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTP-NYRDA----  187 (344)
Q Consensus       122 ~Ga~lp~---~s~v~~~~~~L~~~L~gn------ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTs-naTeA----  187 (344)
                      ||+. |+   .+.+.+.++.|.+. .|-      -+.-++.....++++...+-+++|++ +.|.|+|.. |+|+.    
T Consensus        11 FaaG-PAklp~~VL~e~qkdl~n~-~g~GisV~EmSHRsk~f~kii~~tes~lreLlniP-dn~~vlf~QGGGt~qFaAv   87 (370)
T KOG2790|consen   11 FAAG-PAKLPESVLLEAQKDLLNF-NGSGISVMEMSHRSKDFAKIINDTESLLRELLNIP-DNYKVLFLQGGGTGQFAAV   87 (370)
T ss_pred             cCCC-cccCCHHHHHHHHHHhhcc-CCCcceEEEecccchhHHHHHHHHHHHHHHHHcCC-CceeEEEEeCCCccccccc
Confidence            6666 54   33455566666653 221      12345566677899999999999996 678999995 55654    


Q ss_pred             -HHHHHhhCCCCCC---CeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC-C-CCcc-CHHHHHHHhhhcCCCCCeeEEE
Q 035915          188 -MMLVGESYPFFRG---NFYMT-IIGEELDYVREFASFKESKVILAPEAW-L-DLRI-KGSQLSQYFRRKCKHTPKGLFS  259 (344)
Q Consensus       188 -lnlva~sl~~~~G---d~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~-~-~g~i-~~~~L~~~l~~~~~~~~t~LVa  259 (344)
                       +|+++    ++.|   |.++| .+.  ..+..+ |++.|..-..+|... . -|.+ +.+.++  +++     +.+.|=
T Consensus        88 ~lNL~g----lK~g~~AdYiVTGsWS--~KA~~E-Akk~~~~~~V~~~~k~y~ygkvPd~~~w~--~~~-----da~yvy  153 (370)
T KOG2790|consen   88 PLNLIG----LKHGRCADYVVTGSWS--AKAAEE-AKKYGTPNIVIPKLKSYTYGKVPDPSTWE--LNP-----DASYVY  153 (370)
T ss_pred             chhhhc----cccCCccceEEecccc--HHHHHH-HHhhCCceEEeccccccccCcCCChhhcc--cCC-----CccEEE
Confidence             45554    3444   34443 333  222223 444554333333211 1 1122 222221  122     234555


Q ss_pred             EeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          260 YPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       260 ~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +.+.-+  |+-++-  +..---+|+.+++|.+.-+ -..|+|++++  +.+.....|. .| |.|+.+.+||++++..
T Consensus       154 yCaNETVHGVEf~~--~P~~~~~~~vlVaDmSSnf-lSrpvDvsk~--gvi~aGAQKN-~G-~aG~Tvvivr~dllg~  224 (370)
T KOG2790|consen  154 YCANETVHGVEFDF--IPVNDPKGAVLVADMSSNF-LSRPVDVSKF--GVIFAGAQKN-VG-PAGVTVVIVRKDLLGN  224 (370)
T ss_pred             EecCceeeceecCC--CCCCCCCCceEEEecccch-hcCCccchhc--ceEEeccccc-cC-ccccEEEEEehhhhcc
Confidence            554333  665442  1111246888899999998 7899999975  6677889998 77 9999999999998866

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=96.94  E-value=0.041  Score=55.05  Aligned_cols=162  Identities=11%  Similarity=0.002  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CC-----CCC-CeEE-EcCCcC-H-HHHHHHHHc----
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PF-----FRG-NFYM-TIIGEE-L-DYVREFASF----  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~-----~~G-d~iv-S~~eH~-~-~~ir~la~~----  220 (344)
                      .....+.-++++++++.  +  .+.|+++++||+..++... .+     ..| +.++ ..-.+| . .....+...    
T Consensus        76 ~~~~~~la~~L~~~~~~--~--~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~  151 (397)
T TIGR03246        76 NEPVLRLAKKLVDATFA--D--KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYS  151 (397)
T ss_pred             CHHHHHHHHHHHhhCCC--C--EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence            34456777788888764  3  6999999999977655532 11     023 3344 343444 2 111111100    


Q ss_pred             C-----CcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCc-cc-cccc-cH---HHHHH-HHhCCcEEEecc
Q 035915          221 K-----ESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPAD-IN-GTRY-SM---HWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       221 ~-----G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~av-SN-G~i~-Pl---~~Ia~-ar~~g~~vlvDA  288 (344)
                      .     ...+..+|.+      +.++|++.+.+     +++.|.+.-+ ++ |.+. |.   +.+.+ |+++|+++++|=
T Consensus       152 ~~~~~~~~~~~~~~~~------d~~~l~~~l~~-----~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  220 (397)
T TIGR03246       152 QGFAPLPGGIKHAPYN------DLAAAKALISD-----KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDE  220 (397)
T ss_pred             cCCCCCCCceEEeCCC------CHHHHHHHhcc-----CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            0     0122233322      46778888753     3555555434 34 6554 43   44433 589999999999


Q ss_pred             cccCcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          289 TALVVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       289 aQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|.-.|...    .......||.+++  =|. +|+=--+|+++.++++.+
T Consensus       221 v~tG~Gr~G~~~a~~~~gv~pDi~t~--~K~-lggG~pigav~~~~~i~~  267 (397)
T TIGR03246       221 VQTGVGRTGELYAYMHYGVTPDILTS--AKA-LGGGFPIGAMLTTTEIAA  267 (397)
T ss_pred             hhhcCCccccchhhhhcCCCCCEEEe--ehh-hhCCcceeEEEEcHHHHH
Confidence            994112211    1111246898865  577 541012888888877644

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=96.76  E-value=0.015  Score=58.57  Aligned_cols=169  Identities=12%  Similarity=0.028  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeC-CHHHHHHHHHhhCCCCCCCeEEE-cCCc--C-HHHHHHHHHcC-CcEE--EEE
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTP-NYRDAMMLVGESYPFFRGNFYMT-IIGE--E-LDYVREFASFK-ESKV--ILA  228 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTs-naTeAlnlva~sl~~~~Gd~ivS-~~eH--~-~~~ir~la~~~-G~kV--~~v  228 (344)
                      ...=++++.++.||++|+.+.|-.-+ +++-|+-.|-.++ +.+++.||. ++-|  | +.....-.++- ...+  ..+
T Consensus        87 iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal-l~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSm  165 (477)
T KOG2467|consen   87 IELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL-LKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESM  165 (477)
T ss_pred             HHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh-cCCCCeeeeccCCCCCccccccccCCceeeeeeeecccC
Confidence            33568899999999999888776554 5666655555555 567888873 2221  1 11110000100 1111  113


Q ss_pred             e--CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC---
Q 035915          229 P--EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL---  302 (344)
Q Consensus       229 p--~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~---  302 (344)
                      |  ++...|.||.+.|++.... .   +++|+..-.-+--..++...+++ +.+.|+++++|.||-- |..--.+-.   
T Consensus       166 PYkv~~~TG~IDYD~Le~~A~~-f---rPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHIS-gLVAA~vipsPF  240 (477)
T KOG2467|consen  166 PYKVDPSTGYIDYDKLEKTATL-F---RPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHIS-GLVAAGVIPSPF  240 (477)
T ss_pred             ceeeCCCCCceehHHHHHHHHh-c---CCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHH-HHHhcccCCCcc
Confidence            3  3545688999999875432 1   34555554332478888888876 4779999999999975 543222211   


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ..+|.++-+-||- +-||+| |+++.|+...
T Consensus       241 ey~DiVTTTTHKs-LRGPRg-~mIFyRkGvk  269 (477)
T KOG2467|consen  241 EYCDIVTTTTHKS-LRGPRG-AMIFYRKGVK  269 (477)
T ss_pred             cccceeecccccc-ccCCcc-eeEEEeccCC
Confidence            2589999999999 666974 5555676543

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=96.69  E-value=0.029  Score=57.33  Aligned_cols=156  Identities=13%  Similarity=0.010  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCC--CCe-EEEcCCcC--HHHHHHHHHcCCcEEEEEeCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR--GNF-YMTIIGEE--LDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~--Gd~-ivS~~eH~--~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+-+-+..|+++.|.+-.  +--.=-++|.+-..+.-+....+  .+. +++..-|+  ...++..++..|++|+..+.+
T Consensus       121 aLfefQtlv~dLTGm~VA--NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~  198 (450)
T COG0403         121 ALFEFQTLVADLTGLDVA--NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD  198 (450)
T ss_pred             HHHHHHHHHHHHhCCCcc--cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc
Confidence            456778889999998522  11222355655433333333322  344 45555576  556787888888998887765


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-c-ccccHHHH-HHHHhCCcEEEecccccCcCCccCCC------CC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-G-TRYSMHWI-SEAHRNSWHVLLDATALVVGEDRLNL------AL  302 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G-~i~Pl~~I-a~ar~~g~~vlvDAaQa~~G~~~LDL------s~  302 (344)
                            +.++|++. ..    ..+--+.+..-+. | ...++..+ ..+|+.|++++|       +..|+.|      .+
T Consensus       199 ------d~~~l~~~-~~----~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v-------~aDplaL~LL~pPGe  260 (450)
T COG0403         199 ------DLDDLESA-DD----GDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIV-------AADPLALGLLKPPGE  260 (450)
T ss_pred             ------hhhhhhhc-cc----cCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEE-------EechhHhhccCCccc
Confidence                  34455554 22    1233333333333 8 66668655 567999998876       2233333      25


Q ss_pred             CCCcEEEEccccC----CCCCCCceEEEEEeCCCc
Q 035915          303 HRPDFVLCNLDNT----QNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       303 l~~DFvv~S~HK~----l~G~P~GiG~L~Vr~~~~  333 (344)
                      +++|.++.+++-+    -|||| .+|++-+|++..
T Consensus       261 ~GADIvvG~~QrfGvPmgfGGP-hag~fA~~~~~~  294 (450)
T COG0403         261 FGADIVVGSAQRFGVPMGFGGP-HAGYFAVKDEFK  294 (450)
T ss_pred             cCCceEEecCcccCCCcCCCCc-ceeeeeEhHhHh
Confidence            7899999999994    26667 688998887654

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=96.68  E-value=0.1  Score=52.65  Aligned_cols=89  Identities=13%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             HHHHHHHhhhcCC-CCCeeEEEE-eCccc-ccc-ccHHHHH----HHHhCCcEEEeccccc-CcCCc----cCCCCCCCC
Q 035915          239 GSQLSQYFRRKCK-HTPKGLFSY-PADIN-GTR-YSMHWIS----EAHRNSWHVLLDATAL-VVGED----RLNLALHRP  305 (344)
Q Consensus       239 ~~~L~~~l~~~~~-~~~t~LVa~-~avSN-G~i-~Pl~~Ia----~ar~~g~~vlvDAaQa-~~G~~----~LDLs~l~~  305 (344)
                      .+.+++.+.+... ......|.+ +.+++ |.+ .|-+.+.    .|+++|+++++|-+|. + |..    ..+.....|
T Consensus       178 ~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~-GRtG~~~a~~~~~v~P  256 (412)
T TIGR02407       178 IAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGC-GRTGTFFSFEPAGIEP  256 (412)
T ss_pred             HHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CccchhHHhcccCCCC
Confidence            4557777753110 012344444 44554 774 4445443    3588999999999997 3 431    233345689


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      |+++++  |+ +| +.|  +|+++++++.
T Consensus       257 Di~~~~--K~-lg-~~G~pigav~~~~~~  281 (412)
T TIGR02407       257 DIVCLS--KS-IS-GYGLPLALTLIKPEL  281 (412)
T ss_pred             CEEEec--hh-cc-CCccceeEEEEchhh
Confidence            999988  99 66 333  8999998775

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=96.60  E-value=0.11  Score=53.20  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             CeeEEEEe-Cccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc--CCCC--CCCCcEEEEccccCCCCCCC
Q 035915          254 PKGLFSYP-ADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR--LNLA--LHRPDFVLCNLDNTQNAQPS  321 (344)
Q Consensus       254 ~t~LVa~~-avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~--LDLs--~l~~DFvv~S~HK~l~G~P~  321 (344)
                      ....|.+- .+++ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-  +-..  ...||+++++  |. +|+-.
T Consensus       221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~-gr~G~~~a~~~~gv~pDivt~~--K~-l~~G~  296 (441)
T PRK05769        221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGM-GRTGKMFAIEHFGVEPDIITLA--KA-IAGGL  296 (441)
T ss_pred             ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC-CcccceehhhccCCCCCEEEEc--cc-ccCCc
Confidence            35555554 4444 99999    766654 689999999999998 4 5432  1111  2468999886  76 55323


Q ss_pred             ceEEEEEeCCCcc
Q 035915          322 KITCLLIRKKSFD  334 (344)
Q Consensus       322 GiG~L~Vr~~~~~  334 (344)
                      .+|+++.+++..+
T Consensus       297 p~gav~~~~~i~~  309 (441)
T PRK05769        297 PLGAVIGRAELMF  309 (441)
T ss_pred             ccEEEEEehhhhh
Confidence            4899999887654

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=96.59  E-value=0.082  Score=53.60  Aligned_cols=91  Identities=11%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             CHHHHHHHhhhcCC-CCCeeEEEE-eCccc-ccccc----HHHHH-HHHhCCcEEEecccccCcCC---c-cCCCCCCCC
Q 035915          238 KGSQLSQYFRRKCK-HTPKGLFSY-PADIN-GTRYS----MHWIS-EAHRNSWHVLLDATALVVGE---D-RLNLALHRP  305 (344)
Q Consensus       238 ~~~~L~~~l~~~~~-~~~t~LVa~-~avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~---~-~LDLs~l~~  305 (344)
                      +.++|++.+..... ......|.+ +.+++ |.+.|    ++.|. .|+++|+++++|-+|.-.|.   . ..+.....|
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P  260 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP  260 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence            44667777753110 012444444 44555 77653    35554 36899999999999961131   1 223334679


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      |+++++  |. +| +.|  +|+++++++.
T Consensus       261 Di~t~~--K~-l~-~~G~pigav~~~~~i  285 (425)
T PRK09264        261 DIVTLS--KS-IS-GYGLPMALVLIKPEL  285 (425)
T ss_pred             CEEEec--cc-cC-CCccceEEEEEchhh
Confidence            999997  98 76 334  6999998775

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=96.54  E-value=0.062  Score=53.76  Aligned_cols=186  Identities=10%  Similarity=0.056  Sum_probs=99.8

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-  200 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-  200 (344)
                      +|-.-|.  .+++..+.+....+...    .+......+.-++++++++.  +  .++|+.++|||+..+........| 
T Consensus        38 lGh~~p~--v~~ai~~ql~~~~~~~~----~~~~~~~~~la~~l~~~~~~--~--~v~~~~SGseA~e~Alklar~~~gr  107 (364)
T PRK04013         38 LGHNHPE--WVEEMSEQLEKLVVAGP----MFEHEEKEEMLEELSKWVNY--E--YVYMGNSGTEAVEAALKFARLYTGR  107 (364)
T ss_pred             CCCCCHH--HHHHHHHHHHhcCCccC----CcCCHHHHHHHHHHHhhcCC--C--EEEEeCchHHHHHHHHHHHHHHhCC
Confidence            6666444  44444444444222122    12344455566677888764  2  699999999998876553222234 


Q ss_pred             CeEEE-cCCcC--HHHHHHHH----HcCCc-----EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-c
Q 035915          201 NFYMT-IIGEE--LDYVREFA----SFKES-----KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-G  266 (344)
Q Consensus       201 d~ivS-~~eH~--~~~ir~la----~~~G~-----kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G  266 (344)
                      ++|++ ...+|  ......+.    .+.+.     .+..+|.+      +.+.+++.+.+     ++.-|.+ +.+.+ |
T Consensus       108 ~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~------d~~~l~~~i~~-----~~aAvivEpi~g~gG  176 (364)
T PRK04013        108 KEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN------DVEAAKEAITK-----ETAAVIFEPIQGEGG  176 (364)
T ss_pred             CEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC------CHHHHHHHhcC-----CcEEEEEcCCcCCCC
Confidence            55553 33344  21111100    01111     12223322      34667777753     2444444 44444 6


Q ss_pred             cccc----HHHHHH-HHhCCcEEEeccccc---CcCCc-cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          267 TRYS----MHWISE-AHRNSWHVLLDATAL---VVGED-RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       267 ~i~P----l~~Ia~-ar~~g~~vlvDAaQa---~~G~~-~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      .+.|    ++.+.+ |+++|+++++|-+|+   . |+. -.+.-...||++++  =|. +|+=--+|+++.+++.
T Consensus       177 ~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~Rt-G~~~a~~~~gv~PDiv~~--gK~-lggG~P~~a~~~~~~~  247 (364)
T PRK04013        177 IVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRT-GKFLAIEHYKVEPDIVTM--GKG-IGNGVPVSLTLTNFDV  247 (364)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCC-CchhHHHhcCCCCCEEEe--ccc-ccCCceeEEEEecccc
Confidence            5543    556654 689999999999998   3 331 11122467999998  466 3321127888888765

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=96.50  E-value=0.03  Score=56.19  Aligned_cols=163  Identities=11%  Similarity=0.038  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEc-CCcC--HHHHHHHHHcCCc-------
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTI-IGEE--LDYVREFASFKES-------  223 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~-~eH~--~~~ir~la~~~G~-------  223 (344)
                      .....+.+++|++.+... +  .|+||.++|||+..++.. ..+..+++|++. -.+|  ...+..+ ...+.       
T Consensus        87 ~~~~~~lae~l~~~~~~~-~--~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~-~~~~~~~~~~~~  162 (423)
T TIGR00713        87 TEAEILLAKEIISRVPSV-E--MVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVK-AGSGAATLGLPT  162 (423)
T ss_pred             CHHHHHHHHHHHHhCCcc-c--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhcc-ccCcccccCCCC
Confidence            345577888999888643 3  799999999998765542 112234555532 2233  2211110 00010       


Q ss_pred             ----------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEe
Q 035915          224 ----------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       224 ----------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                                .+..+|.      -+.++|++.+...  ..+++.|.+ +..+| |.+.|    ++.+.+ |+++|+++++
T Consensus       163 ~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~  234 (423)
T TIGR00713       163 SPGVPEDFAKLTLVLPY------NDLEALEEVFEEY--GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIF  234 (423)
T ss_pred             CCCCCcccccceEEeCC------CCHHHHHHHHHHc--CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEE
Confidence                      0111121      1567888888631  123555555 56666 98888    344443 5889999999


Q ss_pred             cccccCcCC--c-cCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          287 DATALVVGE--D-RLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa~~G~--~-~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      |=+|.-...  . ........+|.+  ++=|. ++ + |  +|+++.++++.+
T Consensus       235 DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~-l~-~-G~pig~v~~~~~i~~  282 (423)
T TIGR00713       235 DEVMTGFRVALGGAQEYFGVEPDLT--TLGKI-IG-G-GLPVGAFGGRREIME  282 (423)
T ss_pred             EccccccccCcchhHHHhCCCcchh--hhhhh-hc-C-CCceeeeeEHHHHHH
Confidence            999952011  0 011123468865  46788 66 3 4  899998876544

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=96.32  E-value=0.00066  Score=68.45  Aligned_cols=173  Identities=10%  Similarity=-0.003  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHH-HHHHHHhhCCC-CCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeC--CCC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRD-AMMLVGESYPF-FRGNF-YMTIIGEELDYVREFASFKESKVILAPE--AWL  233 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTe-Alnlva~sl~~-~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~--~~~  233 (344)
                      ...-..+.+.+|+..- ...+.++-||. ++.+...++.. ..++. +.+-++|.+- ... +...|.+++.+|.  ..+
T Consensus        59 n~l~~d~~~~~G~~~~-~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc-~ka-i~~AGl~~~vV~~~~~~d  135 (389)
T PF05889_consen   59 NSLVLDALRLAGLRSV-KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSC-FKA-IERAGLEPVVVENVLEGD  135 (389)
T ss_dssp             HHHHHHHHHHTTHTTH-CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHH-HHH-HHHTT-EEEEE-EEEETT
T ss_pred             HHHHHHHHHHcCCccc-cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccch-HHH-HHhcCCeEEEeeccCCCC
Confidence            3444556677888632 25777788887 45555555531 13455 4588887632 222 2335888888773  222


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc-HHHHHH-HHhCCcEEEecccccC--------------cCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS-MHWISE-AHRNSWHVLLDATALV--------------VGE  295 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P-l~~Ia~-ar~~g~~vlvDAaQa~--------------~G~  295 (344)
                      ....+.+.+++.+....  ....|..+++.+ + |...| ++.|++ |+++|+..+|-.|=.+              .|.
T Consensus       136 ~l~td~~~ie~~i~~~G--~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GR  213 (389)
T PF05889_consen  136 ELITDLEAIEAKIEELG--ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGR  213 (389)
T ss_dssp             EEEEHHHHHHHHHHHHC--GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHST
T ss_pred             eeeccHHHHHHHHHHhC--CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCC
Confidence            23445666777775421  234677778777 5 99999 888876 6999999999876443              177


Q ss_pred             ccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccccc
Q 035915          296 DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTST  337 (344)
Q Consensus       296 ~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~~~  337 (344)
                      ++.+++.++.||++-+|||. ..++.-.|++-+++..-.+++
T Consensus       214 vda~vqS~dkNF~VPvGgai-~As~~~~~i~~vs~~YpGRas  254 (389)
T PF05889_consen  214 VDAFVQSTDKNFMVPVGGAI-MASFDPSGILAVSKEYPGRAS  254 (389)
T ss_dssp             CSEEEEEHHHHHCEESSHEE-EEESSHHHHHHHHHTSHSHBT
T ss_pred             cceeeeecCCCEEecCCCcE-EEecCHHHHHHHHHHhhhhhh
Confidence            78888889999999999998 555654566666655555433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.028  Score=57.84  Aligned_cols=147  Identities=13%  Similarity=0.116  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCC-HHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPN-YRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsn-aTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      .-.+.-+.+|+|+|+..   .+||--| +|-++|  +-++ ..+|.-++|+--+|.. ++-=|+-.|+.++...-+.   
T Consensus       183 ~hkelE~l~A~f~g~e~---a~vF~mGf~TNs~~--~p~l-~~~gsLIiSDelNHaS-i~~GaRLSgAtiRVfkHNd---  252 (519)
T KOG1357|consen  183 EHKELEELVARFLGVED---AIVFSMGFATNSMN--IPSL-LGKGSLIISDELNHAS-LITGARLSGATTRVFRHND---  252 (519)
T ss_pred             HHHHHHHHHHHhcCCcc---eEEEeccccccccC--ccee-ecCCcceeeccccchh-eeccccccCceEEEEecCC---
Confidence            44677788999999963   5899866 232322  1222 3467667765444421 3333555688888776542   


Q ss_pred             ccCHHHHHHHhh-------hcCCCC-CeeEEEEeCccc--cccccHHHH-HHHHhCCcEEEecccccCcCCcc-------
Q 035915          236 RIKGSQLSQYFR-------RKCKHT-PKGLFSYPADIN--GTRYSMHWI-SEAHRNSWHVLLDATALVVGEDR-------  297 (344)
Q Consensus       236 ~i~~~~L~~~l~-------~~~~~~-~t~LVa~~avSN--G~i~Pl~~I-a~ar~~g~~vlvDAaQa~~G~~~-------  297 (344)
                         ..+|++.|+       +++... +..+++.-....  |.+..+.++ +..|++.+++++|.+|++ |...       
T Consensus       253 ---m~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSi-GA~g~tGrgvc  328 (519)
T KOG1357|consen  253 ---MQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSI-GAMGATGRGVC  328 (519)
T ss_pred             ---HHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccc-cccCCCCccee
Confidence               345555554       222111 233555555553  999999555 555889999999999999 8762       


Q ss_pred             --CCCCCCCCcEEEEccccCCCC
Q 035915          298 --LNLALHRPDFVLCNLDNTQNA  318 (344)
Q Consensus       298 --LDLs~l~~DFvv~S~HK~l~G  318 (344)
                        .-+...++|.|-..+-|. ||
T Consensus       329 e~~g~d~~dvDImMGtftKS-fg  350 (519)
T KOG1357|consen  329 EYFGVDPEDVDIMMGTFTKS-FG  350 (519)
T ss_pred             eccCCCchhheeecceehhh-cc
Confidence              123446799999999998 77

>PLN02397 aspartate transaminase

Probab=96.25  E-value=0.11  Score=52.51  Aligned_cols=165  Identities=8%  Similarity=-0.072  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHcCCC-C-C--CCeE--EEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHCGLP-D-D--EYLV--LFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~Lga~-p-~--ey~V--VFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.|++++.-. . .  +..|  +-|.+++++..++...+. +.+||+++ ..-.+. + ....++..|++++.+|
T Consensus        93 ~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~-~-y~~~~~~~g~~~~~v~  170 (423)
T PLN02397         93 LAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWG-N-HHNIFRDAGVPVRTYR  170 (423)
T ss_pred             CHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCch-h-HHHHHHHcCCeEEEee
Confidence            456788888876321 1 0  1134  224444445433322111 24899864 333322 1 2233455699999888


Q ss_pred             C-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCc------
Q 035915          230 E-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGED------  296 (344)
Q Consensus       230 ~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~------  296 (344)
                      . +..+..++.+.+.+.+...  ..+++++.++.-+|  |..++.+.+.+    +++++++++.|-+=.-....      
T Consensus       171 l~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~  248 (423)
T PLN02397        171 YYDPKTRGLDFDGLLEDLKAA--PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADA  248 (423)
T ss_pred             cccCcCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhh
Confidence            6 2222357888787776531  12466777764455  99999965532    47899999998763310100      


Q ss_pred             -cC-CCCCCCC-cEEEEccccCCCCCCC-ceEEEE
Q 035915          297 -RL-NLALHRP-DFVLCNLDNTQNAQPS-KITCLL  327 (344)
Q Consensus       297 -~L-DLs~l~~-DFvv~S~HK~l~G~P~-GiG~L~  327 (344)
                       ++ .+...+. =+++.|+=|. |+.|. .+|.++
T Consensus       249 ~~~~~~~~~~~~vI~~~SfSK~-~~~~G~RvG~~v  282 (423)
T PLN02397        249 QSVRMFVEDGHEILVAQSYAKN-MGLYGERVGALS  282 (423)
T ss_pred             HHHHHHHhcCCcEEEEEECccc-CCCccccceEEE
Confidence             00 1111111 2667799999 88441 378885

>PRK06062 hypothetical protein; Provisional

Probab=96.24  E-value=0.16  Score=52.15  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             HHHHHHHhhhcCCCCCeeEE-EEeCccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCCCCcE
Q 035915          239 GSQLSQYFRRKCKHTPKGLF-SYPADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR----LNLALHRPDF  307 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LV-a~~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DF  307 (344)
                      .++|++.|... ...+...| .=+.+++ |.+.|    ++.+.+ |+++|+++++|=+|.-.|..-    .+.-...||+
T Consensus       200 ~~~le~~l~~~-~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi  278 (451)
T PRK06062        200 LAHLERVIELE-GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDL  278 (451)
T ss_pred             HHHHHHHHHhc-CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCe
Confidence            35567777431 11233334 3455555 99988    666654 689999999999998325321    1222357998


Q ss_pred             EEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      +++  =|. +|+   |  +|+++.++++.+.
T Consensus       279 ~t~--gK~-lggG~~P--igav~~~~~i~~~  304 (451)
T PRK06062        279 ITF--AKG-VNSGYVP--LGGVAISEAIAAT  304 (451)
T ss_pred             eee--chh-hhcCCcC--cEEEEEcHHHHHH
Confidence            876  587 553   5  8889998876553

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=96.19  E-value=0.016  Score=57.06  Aligned_cols=180  Identities=10%  Similarity=0.008  Sum_probs=94.4

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC------CCCC-CeEEEcC-CcC--HH-HHH----
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP------FFRG-NFYMTII-GEE--LD-YVR----  215 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~------~~~G-d~ivS~~-eH~--~~-~ir----  215 (344)
                      .........+.-+++.+.++-.  ...|.|+.++|||+..++.--.      ..++ ..|++.. .+|  .. ++.    
T Consensus        54 ~~~~~~~~~~la~~L~~~~p~~--~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~  131 (339)
T PF00202_consen   54 SGFTHPEAAELAEKLAELFPGG--LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGN  131 (339)
T ss_dssp             TTSEEHHHHHHHHHHHHHSSTT--EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSS
T ss_pred             cceeccchhhhhhhhhhccccc--cceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCC
Confidence            3444555566667777777432  2379999999999776544221      1123 3455432 344  11 111    


Q ss_pred             -HHHHcC---CcEEEEEeCCCCCC----ccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-cccccH-HHHH----HHHhC
Q 035915          216 -EFASFK---ESKVILAPEAWLDL----RIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYSM-HWIS----EAHRN  280 (344)
Q Consensus       216 -~la~~~---G~kV~~vp~~~~~g----~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl-~~Ia----~ar~~  280 (344)
                       .+....   ...+..+|......    .-....+.+.+.... ......|.+ |.+.+ |.+.|- +++.    .|+++
T Consensus       132 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~  210 (339)
T PF00202_consen  132 PPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN-ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH  210 (339)
T ss_dssp             THHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhc-CCcEEEEEEeccccccCccccccchhhehccccccc
Confidence             111111   12345567653211    000111222221110 012434444 55555 766653 4443    35889


Q ss_pred             CcEEEecccccCcCCccCCC----CCCCCcEEEEccccCCCCCCCceEEEEEeCCCcccc
Q 035915          281 SWHVLLDATALVVGEDRLNL----ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTS  336 (344)
Q Consensus       281 g~~vlvDAaQa~~G~~~LDL----s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~~  336 (344)
                      |+++++|=+|.-.|..---+    ..+.||+++++  |.|-|| --+|++++++++.+..
T Consensus       211 gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG-~p~sav~~~~~i~~~~  267 (339)
T PF00202_consen  211 GILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGG-LPISAVLGSEEIMEAF  267 (339)
T ss_dssp             T-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTT-SSEEEEEEEHHHHTTS
T ss_pred             ccceecccccccccccCCccceecccccCcccccc--cchhhh-hhcccccccchhhccc
Confidence            99999999998324332112    24679999998  884444 4599999999877653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=96.18  E-value=0.15  Score=52.67  Aligned_cols=166  Identities=9%  Similarity=0.025  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCCCC-eEEE-cCCcC--HHHHHHHHHcCCc----
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFRGN-FYMT-IIGEE--LDYVREFASFKES----  223 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~Gd-~ivS-~~eH~--~~~ir~la~~~G~----  223 (344)
                      .....+.-+++++++....+  .|.|+.++|||+.....   .+.-.+|. .|++ .-.+|  ......+......    
T Consensus       123 ~~~~~~lae~L~~~~p~~~~--~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~  200 (459)
T PRK11522        123 DPLRAMLAKTLAALTPGKLK--YSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF  200 (459)
T ss_pred             CHHHHHHHHHHHHhCCCCCC--EEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence            33445555666666543222  69999999998776443   33212233 3543 33344  2111111000000    


Q ss_pred             -----EEEEEeCCCCCCccCHHHHHHHhhhc-CCCCCee-EEEEeCccc-ccccc----HHHHHH-HHhCCcEEEecccc
Q 035915          224 -----KVILAPEAWLDLRIKGSQLSQYFRRK-CKHTPKG-LFSYPADIN-GTRYS----MHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       224 -----kV~~vp~~~~~g~i~~~~L~~~l~~~-~~~~~t~-LVa~~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                           .+..+|.+      +.+++++.+... ....+.. ++.=+.+++ |.+.|    ++.+.+ |+++|+++++|=+|
T Consensus       201 ~~~~~~~~~~~~~------d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~  274 (459)
T PRK11522        201 MPLLPGFRHVPFG------NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ  274 (459)
T ss_pred             CCCCCCCcccCCC------CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccce
Confidence                 11122221      346677766421 0012333 444455555 99888    666654 68999999999999


Q ss_pred             c-CcCCcc----CCCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCcc
Q 035915          291 L-VVGEDR----LNLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       291 a-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      . + |..-    .......||.+++  =|. +|+   |  +|+++++++..+
T Consensus       275 tG~-GRtG~~~a~e~~gv~PDivt~--gK~-lggG~~P--igav~~~~~i~~  320 (459)
T PRK11522        275 TGM-GRTGKMFACEHENVQPDILCL--AKA-LGGGVMP--IGATIATEEVFS  320 (459)
T ss_pred             ecC-CccchhhhhhccCCCCCEEEe--chh-hhCCCcc--ceeEEEcHHHHH
Confidence            5 3 3221    1122356998866  587 553   5  899999877654

>PRK06105 aminotransferase; Provisional

Probab=96.01  E-value=0.13  Score=52.99  Aligned_cols=88  Identities=15%  Similarity=0.215  Sum_probs=54.8

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DF  307 (344)
                      +++++.+... ...+..-|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-    .+.....||+
T Consensus       205 ~~le~~~~~~-~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~-GRtG~~f~~~~~~v~PDi  282 (460)
T PRK06105        205 NELEALILAE-GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGF-GRTGNMFGCETFGIKPDI  282 (460)
T ss_pred             HHHHHHHHHc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCC-CcCchhhhHHhcCCCCCe
Confidence            4566666421 1123344444 55555 88877    555544 589999999999995 5 6421    2233467999


Q ss_pred             EEEccccCCCCC---CCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      ++++  |- +|+   |  +|++++++++.+
T Consensus       283 ~~~g--K~-lggG~~P--~~av~~~~~i~~  307 (460)
T PRK06105        283 LVMS--KQ-LSSSYQP--LSAVLMNEKVYD  307 (460)
T ss_pred             eeee--cc-cccCccc--ceEEEEcHHHHH
Confidence            8775  66 432   5  888888877654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=95.89  E-value=0.23  Score=51.07  Aligned_cols=167  Identities=9%  Similarity=-0.000  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCCCC-eEEE-cCCcC--HHHHHHHHH----cCC-
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFRGN-FYMT-IIGEE--LDYVREFAS----FKE-  222 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~Gd-~ivS-~~eH~--~~~ir~la~----~~G-  222 (344)
                      .....+.-+++++.+...-  ..|.|+.++|||+.....   .+.-..|. .|++ .-.+|  ......+-.    +.+ 
T Consensus       116 ~~~~~~lAe~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~  193 (442)
T TIGR03372       116 DPLRALLAKTLAALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPF  193 (442)
T ss_pred             CHHHHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence            3344555556666654322  269999999998776443   33111243 3543 33344  211111100    001 


Q ss_pred             ----cEEEEEeCCCCCCccCHHHHHHHhhhc-CCCCCeeE-EEEeCccc-ccccc----HHHHHH-HHhCCcEEEecccc
Q 035915          223 ----SKVILAPEAWLDLRIKGSQLSQYFRRK-CKHTPKGL-FSYPADIN-GTRYS----MHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       223 ----~kV~~vp~~~~~g~i~~~~L~~~l~~~-~~~~~t~L-Va~~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                          ..+..+|.+      +.+.+++.+... ....+... +.=+.+++ |.+.|    ++.+.+ |+++|+++++|=+|
T Consensus       194 ~p~~~~~~~~p~~------d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~  267 (442)
T TIGR03372       194 MPLLPGFHHVAFG------DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQ  267 (442)
T ss_pred             CCCCCCCEEeCCC------CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecc
Confidence                113334432      234555555320 01123443 43455555 99888    766654 68999999999999


Q ss_pred             c-CcCCcc----CCCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          291 L-VVGEDR----LNLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       291 a-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      . + |..-    .......||++++  =|- +|+   |  +|+++.++++.+.
T Consensus       268 tG~-GRtG~~~a~e~~gv~PDivt~--gK~-lg~G~~P--igavv~~~~i~~~  314 (442)
T TIGR03372       268 TGM-GRTGKMFACEHEGVQPDILCL--AKA-LGGGVMP--IGATIATEAVFSV  314 (442)
T ss_pred             cCC-CccccchhhhhcCCCCCeeee--hhh-hcCCccc--ceEEEecHHHHHh
Confidence            5 3 4221    1112346999875  587 552   5  7888888876543

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=95.78  E-value=0.51  Score=48.32  Aligned_cols=77  Identities=12%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             CeeEEEE-eCccc-ccccc----HHHHH-HHHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCCCCCCc
Q 035915          254 PKGLFSY-PADIN-GTRYS----MHWIS-EAHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQNAQPSK  322 (344)
Q Consensus       254 ~t~LVa~-~avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~G  322 (344)
                      ++..|.+ |.+++ |.+.|    ++.+. .|+++|+++++|=+|.-.|...    .......+|++++  =|. +| + |
T Consensus       204 ~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~-l~-~-G  278 (443)
T PRK08360        204 GVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKP-LG-G-G  278 (443)
T ss_pred             CeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--ccc-cc-C-C
Confidence            3554444 54444 88887    34443 3588999999999987314322    1112357898866  788 76 3 4


Q ss_pred             --eEEEEEeCCCccc
Q 035915          323 --ITCLLIRKKSFDT  335 (344)
Q Consensus       323 --iG~L~Vr~~~~~~  335 (344)
                        +|+++.++++.+.
T Consensus       279 ~pigav~~~~~i~~~  293 (443)
T PRK08360        279 LPISATIGRAEIMDS  293 (443)
T ss_pred             ceeEEEEEcHHHHhh
Confidence              8999988765543

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=95.74  E-value=0.077  Score=53.74  Aligned_cols=167  Identities=8%  Similarity=-0.042  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEE-cCCcC--HHHHHHHHH----c------C
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMT-IIGEE--LDYVREFAS----F------K  221 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS-~~eH~--~~~ir~la~----~------~  221 (344)
                      ....+.++++++.+. ..+  .|.||.+++||+..+... ..+..++.+++ .-.+|  ......+..    .      .
T Consensus        90 ~~~~~la~~L~~~~~-~~~--~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  166 (426)
T PRK00062         90 ELEVELAELVIELVP-SIE--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP  166 (426)
T ss_pred             HHHHHHHHHHHHhCC-CCC--EEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence            344566777776653 123  699999999998876653 22223445543 22344  211111100    0      0


Q ss_pred             CcEE----EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHH-HHHhCCcEEEecccc
Q 035915          222 ESKV----ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWIS-EAHRNSWHVLLDATA  290 (344)
Q Consensus       222 G~kV----~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQ  290 (344)
                      +...    .......    -+.+++++.+.+.  ..++..|.+- ..++ |.+.|    ++.+. .|+++|+++++|=+|
T Consensus       167 ~~~~~~~~~~~~~~~----~d~~~l~~~i~~~--~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~  240 (426)
T PRK00062        167 GVPEDFAKHTLTAPY----NDLEAVEELFEEY--GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVM  240 (426)
T ss_pred             CCCcccccceEEcCC----CCHHHHHHHHHhC--CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeech
Confidence            1100    0011111    1567788777531  1235555554 5565 99988    65554 468999999999999


Q ss_pred             cCcCCcc---CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          291 LVVGEDR---LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       291 a~~G~~~---LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .-.....   .+.-...||++++  -|. +++=-.+|+++.++++.+
T Consensus       241 ~G~r~g~~~~~~~~~~~pDi~~~--gK~-l~~G~p~ga~~~~~~i~~  284 (426)
T PRK00062        241 TGFRVALGGAQGYYGVTPDLTTL--GKI-IGGGLPVGAFGGRREIME  284 (426)
T ss_pred             hccccCCccHHHHhCCCcchHhh--hhH-hhCCCcceeeeEHHHHHH
Confidence            7311111   1111235887655  598 652011788888766544

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=95.73  E-value=0.34  Score=49.04  Aligned_cols=174  Identities=11%  Similarity=0.045  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEc-CCcC--HH-HH--HH-HH-HcCC---
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTI-IGEE--LD-YV--RE-FA-SFKE---  222 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~-~eH~--~~-~i--r~-la-~~~G---  222 (344)
                      .....+.-+++++++.-.  ...|.|+.+++||+..++.. ..+.....+++. -.+|  .. .+  .. .. .+.+   
T Consensus        85 ~~~~~~la~~L~~~~~~~--~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~  162 (433)
T PRK08117         85 YESILKLAEELAEITPGG--LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQP  162 (433)
T ss_pred             CHHHHHHHHHHHHhCCCC--CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCC
Confidence            344566777788877322  22799999999987765442 111122345432 2234  11 11  10 00 0001   


Q ss_pred             --cEEEEEeCCCCC----C----c---cCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCc
Q 035915          223 --SKVILAPEAWLD----L----R---IKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSW  282 (344)
Q Consensus       223 --~kV~~vp~~~~~----g----~---i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~  282 (344)
                        ..+..+|.....    +    .   -+.++|++.+.......+...|.+ +.+++ |.+.|    ++.+.+ |+++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~  242 (433)
T PRK08117        163 LLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI  242 (433)
T ss_pred             CCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC
Confidence              112333332100    0    0   133456666642111123444444 44455 99988    766654 689999


Q ss_pred             EEEecccccCcCCcc--C--CCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          283 HVLLDATALVVGEDR--L--NLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       283 ~vlvDAaQa~~G~~~--L--DLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      ++++|=+|.-.|..-  +  .--...||++  ++=|. +| + |  +|+++.+++..+.
T Consensus       243 llI~DEv~tG~gr~G~~~~~~~~gv~pDi~--t~sK~-lg-~-G~pigav~~~~~i~~~  296 (433)
T PRK08117        243 LLIFDEVQTGFGRTGEWFAAQTFGVVPDIM--TIAKG-IA-S-GLPLSAVVASKELMEQ  296 (433)
T ss_pred             EEEEecchhccCccccchhHhhcCCCCCEe--ehhhh-cc-C-CCcceeEEEcHHHHhh
Confidence            999999988323321  1  1112458875  55688 66 2 4  8889888776543

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=95.70  E-value=0.21  Score=52.21  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=56.2

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCccC----CCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDRL----NLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~L----DLs~l~~DF  307 (344)
                      ++|++.+... .......|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|=+|. + |..--    +.....||+
T Consensus       247 ~~le~~l~~~-~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGf-GRtG~~~a~e~~gv~PDi  324 (504)
T PLN02760        247 DNLENLILKE-GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAF-GRLGTMFGCDKYNIKPDL  324 (504)
T ss_pred             HHHHHHHHhc-CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCC-cccchhhHHHhcCCCCcE
Confidence            3466665421 1123444444 44455 99988    777754 699999999999994 5 54321    222346998


Q ss_pred             EEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      +++  =|. +|+   |  +|++++++++.+.
T Consensus       325 vtl--gK~-lggG~~P--igAv~~~~~i~d~  350 (504)
T PLN02760        325 VSL--AKA-LSSAYMP--IGAVLVSPEISDV  350 (504)
T ss_pred             EEe--ccc-ccCCccc--cceEeecHHHHhh
Confidence            777  477 543   5  7888888876553

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=95.68  E-value=0.2  Score=51.86  Aligned_cols=260  Identities=15%  Similarity=0.178  Sum_probs=136.0

Q ss_pred             hHHHHHHhhhccccccccCCCCCchhhHHHHHHHHhcCcccCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 035915           38 HIVAEAISTLHGLDLRWSGPITPTEMQYVEQYVLAKYPQYAGLVEGEKVDLSSLCINEESSETGPDDRRKSPRNGFRSEP  117 (344)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (344)
                      .+||.-..+||.     -+++...+.+|..+.+=.+=||=..-.++==.|+.+..+      ++..| -.+|+       
T Consensus        15 D~IadY~e~ir~-----r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~------PGitH-w~hP~-------   75 (511)
T KOG0628|consen   15 DYIADYLENIRK-----RRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIM------PGITH-WQHPH-------   75 (511)
T ss_pred             HHHHHHHHhhhc-----cCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHcc------CCCcc-cCCCc-------
Confidence            357777777776     466777788898888877777654222201112333333      22333 11444       


Q ss_pred             CCCCcCCCCCCcccccchHHHHHHhhccC---CCC---hhhhhhHHHHHHHHHHHHHcCCCC--------CCCeEEEeCC
Q 035915          118 STPSFGSNLPDLDRTQLEPSRLLDILTKK---SSF---PGSFISIPEIQARNKVLKHCGLPD--------DEYLVLFTPN  183 (344)
Q Consensus       118 ~~~~~Ga~lp~~s~v~~~~~~L~~~L~gn---ss~---~g~~as~~le~AR~~IA~~Lga~p--------~ey~VVFTsn  183 (344)
                          |=|=.|..   ...++-+-++|.+.   -.|   .+...++..--.=+-++++++.+.        +--.|++. +
T Consensus        76 ----fhAyfpa~---~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~-t  147 (511)
T KOG0628|consen   76 ----FHAYFPAG---NSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQG-T  147 (511)
T ss_pred             ----eeeEccCc---cchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEec-C
Confidence                22222221   12233344444333   111   112233333445566666666531        11145554 4


Q ss_pred             HHHHHHHH--Hh----------hCC-CCCC----CeEE--EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHH
Q 035915          184 YRDAMMLV--GE----------SYP-FFRG----NFYM--TIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQ  244 (344)
Q Consensus       184 aTeAlnlv--a~----------sl~-~~~G----d~iv--S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~  244 (344)
                      ++|+.-++  +.          +-| +...    +.|+  |+-.|.  .+..-|--.|++.+.++.+. +-.+..+.|++
T Consensus       148 ases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahs--sveka~~i~~VklR~l~td~-n~~mr~~~L~~  224 (511)
T KOG0628|consen  148 ASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHS--SVEKACLIAGVKLRALPTDE-NFGMRGDTLRK  224 (511)
T ss_pred             cchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccc--hHHHhHhhcceeEEEeeccc-CcCCCHHHHHH
Confidence            45553321  11          111 1111    1233  333333  24443444578899999886 56788999999


Q ss_pred             HhhhcCCCCCeeEEEEeCccc-c-----ccccHHHHHH-HHhCCcEEEeccccc----CcCCccCCCCC-CCCcEEEEcc
Q 035915          245 YFRRKCKHTPKGLFSYPADIN-G-----TRYSMHWISE-AHRNSWHVLLDATAL----VVGEDRLNLAL-HRPDFVLCNL  312 (344)
Q Consensus       245 ~l~~~~~~~~t~LVa~~avSN-G-----~i~Pl~~Ia~-ar~~g~~vlvDAaQa----~~G~~~LDLs~-l~~DFvv~S~  312 (344)
                      ++.++..   .+++=+..+-| |     ..=+|+++.. ++++|+++|||||=+    +|.-.+--+.- -.+|-+.++.
T Consensus       225 AIe~D~a---rGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~  301 (511)
T KOG0628|consen  225 AIEEDIA---RGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNP  301 (511)
T ss_pred             HHHHHHh---CCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCCh
Confidence            8875432   23333322222 2     3344566654 689999999999866    32222211221 2589999999


Q ss_pred             ccCCCCCCCceEEEEEeCC
Q 035915          313 DNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       313 HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ||| +-.=..+..||+|+.
T Consensus       302 hK~-~~vnfDCs~lWvkd~  319 (511)
T KOG0628|consen  302 HKW-LLVNFDCSPLWVKDG  319 (511)
T ss_pred             hhe-eEEeeeeecceeecC
Confidence            999 433457888999987

>PRK12566 glycine dehydrogenase; Provisional

Probab=95.65  E-value=0.12  Score=57.86  Aligned_cols=152  Identities=13%  Similarity=0.088  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHH---HHHHHHHhhCCCCCCCe-EEEcCCcC--HHHHHHHHHcCCcEEEEEeC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYR---DAMMLVGESYPFFRGNF-YMTIIGEE--LDYVREFASFKESKVILAPE  230 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaT---eAlnlva~sl~~~~Gd~-ivS~~eH~--~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+-+-+.-|+++.|.+-..  --.=.++|   ||+.+..+.-. .+.+. +++..-|+  ...++..++..|++++.-  
T Consensus       125 al~e~Qtmi~~LtGm~vaN--ASl~D~atA~aEA~~ma~~~~~-~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~--  199 (954)
T PRK12566        125 ALLNFQQMTIDLTGLDLAN--ASLLDEATAAAEAMALAKRVAK-SKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVVD--  199 (954)
T ss_pred             HHHHHHHHHHHHhCchhhh--hhhccchhHHHHHHHHHHHHhh-cCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEEc--
Confidence            4567778899999875211  11112333   55655443211 11344 45555577  345677777788888751  


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c--cccccHHHH-HHHHhCCcEEEecccccCcCCccC-CCCCCCC
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N--GTRYSMHWI-SEAHRNSWHVLLDATALVVGEDRL-NLALHRP  305 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N--G~i~Pl~~I-a~ar~~g~~vlvDAaQa~~G~~~L-DLs~l~~  305 (344)
                                ++++.+..       .++++..++ |  |.+.+++.| ..+|+.|+++++ ++-.+ ...-| .-.++++
T Consensus       200 ----------~~~~~~~~-------~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~-~~d~l-aL~ll~~Pge~GA  260 (954)
T PRK12566        200 ----------AVDNLAAH-------AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACV-AADLL-SLLVLTPPGELGA  260 (954)
T ss_pred             ----------chhhcCCC-------CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEE-EeCHH-HHhCCCChhhcCC
Confidence                      12222221       244444444 4  999999766 557999998653 43332 11100 1146899


Q ss_pred             cEEEEccccC----CCCCCCceEEEEEeCCCc
Q 035915          306 DFVLCNLDNT----QNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       306 DFvv~S~HK~----l~G~P~GiG~L~Vr~~~~  333 (344)
                      |.++.+++-+    -|||| +.|++-+|++..
T Consensus       261 DI~vG~~Q~fGvp~~~GGP-~ag~~a~~~~~~  291 (954)
T PRK12566        261 DVVLGSTQRFGVPMGYGGP-HAAYFACRDDYK  291 (954)
T ss_pred             cEEeeCCCcCCCCCCCCCC-CeeeeeehHHHH
Confidence            9999988763    27778 799999887543

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=95.62  E-value=0.8  Score=45.92  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---CC---CC-CCCeEEE-cCCcC--HHHHHHHHHcC---
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---YP---FF-RGNFYMT-IIGEE--LDYVREFASFK---  221 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l~---~~-~Gd~ivS-~~eH~--~~~ir~la~~~---  221 (344)
                      .....+..++++++++.  +  .|.|+.+++||+..++..   +.   .. .++.|++ .-.+|  ......+....   
T Consensus        80 ~~~~~~la~~l~~~~~~--~--~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~  155 (406)
T PRK12381         80 NEPVLRLAKKLIDATFA--D--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYS  155 (406)
T ss_pred             CHHHHHHHHHHHhhCCC--C--eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccc
Confidence            33456677788887754  3  699999999987765543   21   01 2234543 22344  21111111000   


Q ss_pred             -C-----cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc-cccc-cHHH---HH-HHHhCCcEEEecc
Q 035915          222 -E-----SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRY-SMHW---IS-EAHRNSWHVLLDA  288 (344)
Q Consensus       222 -G-----~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~-Pl~~---Ia-~ar~~g~~vlvDA  288 (344)
                       +     ..+..+|.      -+.+.|++.+.+     +++.|.+. .+++ |.+. |.+.   +. .|+++|+++++|=
T Consensus       156 ~~~~~~~~~~~~~~~------~d~~~l~~~l~~-----~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DE  224 (406)
T PRK12381        156 QDFAPLPPDIRHAAY------NDLNSASALIDD-----QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDE  224 (406)
T ss_pred             cCCCCCCCCeeEeCC------CCHHHHHHhccC-----CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcc
Confidence             0     01222222      145678877753     35555554 3334 6543 3443   33 3588999999999


Q ss_pred             cccCcCCcc--C--CCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          289 TALVVGEDR--L--NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       289 aQa~~G~~~--L--DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|.-.|..-  +  ......+|.+++|  |. +|+=--+|+++.++++.+.
T Consensus       225 v~tG~gr~G~~~~~~~~~v~pDi~t~s--K~-l~gG~~ig~~~~~~~~~~~  272 (406)
T PRK12381        225 VQTGVGRTGELYAYMHYGVTPDVLTTA--KA-LGGGFPIGAMLTTEKCASV  272 (406)
T ss_pred             hhhCCCCCcchhhhHhhCCCCCEEEeh--hh-hhCCCceEEEEEcHHHHhh
Confidence            995113221  1  1223568986554  98 6511128999888776543

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=95.53  E-value=0.35  Score=49.29  Aligned_cols=164  Identities=15%  Similarity=0.195  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHH--HHHhh---------CCCCCCCe--EEEc-CCcCHHHHHHHHHcCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMM--LVGES---------YPFFRGNF--YMTI-IGEELDYVREFASFKE  222 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAln--lva~s---------l~~~~Gd~--ivS~-~eH~~~~ir~la~~~G  222 (344)
                      -+-++|+..|++||++++  +|+--.|.+=.|+  ++..+         -||...+.  +++. -++.-  =..+++..|
T Consensus        70 Gipe~r~l~a~llgv~~~--~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDR--HFai~E~~G  145 (425)
T PF12897_consen   70 GIPEARELFAELLGVPPE--NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDR--HFAITEHFG  145 (425)
T ss_dssp             --HHHHHHHHHHHTS-GG--GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HH--HHHHHHHCT
T ss_pred             ChHHHHHHHHHHhCCCHH--HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchH--HHHHHHhhC
Confidence            578899999999999987  5776667654433  12222         25654433  4543 23321  122356789


Q ss_pred             cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-----HhCCcEEEecccccCcCC
Q 035915          223 SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-----HRNSWHVLLDATALVVGE  295 (344)
Q Consensus       223 ~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-----r~~g~~vlvDAaQa~~G~  295 (344)
                      ++.+.||.+.+ | .|.+.+++++..+  ..-+++.++|.-||  |..+.=+.+.++     ...+..++-|=|=++ -|
T Consensus       146 iemi~VpM~~d-G-PDmD~Ve~LV~~D--~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~v-Hh  220 (425)
T PF12897_consen  146 IEMIPVPMTED-G-PDMDMVEELVAED--PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAV-HH  220 (425)
T ss_dssp             -EEEEEEEETT-E-E-HHHHHHHTHTS--TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT--B
T ss_pred             cEEEecCCCCC-C-CCHHHHHHHHhcC--CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceE-ee
Confidence            99999998864 4 4888899988532  12368999999888  999998877653     246777888877666 44


Q ss_pred             cc--------CCC-----CCCCCc--EEEEccccCCCCCCCceEEEEEeC
Q 035915          296 DR--------LNL-----ALHRPD--FVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       296 ~~--------LDL-----s~l~~D--Fvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      .-        +|+     +.-++|  |+.+|.-|+-|.| .|++++-.++
T Consensus       221 L~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~G-aGva~~aaS~  269 (425)
T PF12897_consen  221 LYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPG-AGVAFFAASE  269 (425)
T ss_dssp             SSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TT-SS-EEEEE-H
T ss_pred             ccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCC-cceeeeecCH
Confidence            41        111     012355  8889999983432 2666665543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK12403 putative aminotransferase; Provisional

Probab=95.31  E-value=0.28  Score=50.53  Aligned_cols=75  Identities=15%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             eeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCccC----CCCCCCCcEEEEccccCCCC-C--C
Q 035915          255 KGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDRL----NLALHRPDFVLCNLDNTQNA-Q--P  320 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~L----DLs~l~~DFvv~S~HK~l~G-~--P  320 (344)
                      ...|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+|.-.|..--    +.-...||++++  =|. +| |  |
T Consensus       223 iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gK~-lggG~~P  299 (460)
T PRK12403        223 VAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSI--AKG-LTSGYVP  299 (460)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEE--ccc-ccccccc
Confidence            433444 45554 88888    766654 6899999999999963243221    112356999984  577 44 2  5


Q ss_pred             CceEEEEEeCCCcc
Q 035915          321 SKITCLLIRKKSFD  334 (344)
Q Consensus       321 ~GiG~L~Vr~~~~~  334 (344)
                        +|+++++++..+
T Consensus       300 --iga~v~~~~i~~  311 (460)
T PRK12403        300 --MGGLVLSKRIAE  311 (460)
T ss_pred             --eEEEEECHHHHH
Confidence              788888876544

>PRK06541 hypothetical protein; Provisional

Probab=95.10  E-value=0.34  Score=49.94  Aligned_cols=88  Identities=11%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             HHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHHH-HHhCCcEEEecccc-cCcCCccCC--C--CCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWISE-AHRNSWHVLLDATA-LVVGEDRLN--L--ALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQ-a~~G~~~LD--L--s~l~~DF  307 (344)
                      +.+++.+... .......|.+. .+++ |.+.|    ++.+.+ |+++|+++++|=+| .+ |..---  .  -...||+
T Consensus       208 ~~l~~~l~~~-~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGf-GR~G~~~a~~~~gv~PDi  285 (460)
T PRK06541        208 DRIEEAIEFE-GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAF-GRLGEMFGCERFGYVPDI  285 (460)
T ss_pred             HHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CcCchhhhhhhcCCCCCE
Confidence            4566666531 11234455554 3444 89888    666654 68999999999999 45 533211  1  2346998


Q ss_pred             EEEccccCCCCC---CCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      +++  =|. +|+   |  +|+++++++..+
T Consensus       286 vt~--gK~-l~~G~~p--igav~~~~~i~~  310 (460)
T PRK06541        286 ITC--AKG-ITSGYSP--LGAMIASDRLFE  310 (460)
T ss_pred             EEe--ccc-ccCCccc--eeEEEEcHHHHH
Confidence            875  587 553   5  899999876544

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=95.07  E-value=0.43  Score=48.87  Aligned_cols=88  Identities=13%  Similarity=0.231  Sum_probs=55.7

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecccc-cCcCCcc----CCCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATA-LVVGEDR----LNLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQ-a~~G~~~----LDLs~l~~DF  307 (344)
                      ++|++++... ...+...|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+| .+ |..-    .+.....||+
T Consensus       202 ~~le~~l~~~-~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~-GrtG~~~a~~~~gv~PDi  279 (442)
T PRK13360        202 DELERLVTLH-DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGF-GRLGAPFAAQYFGVTPDL  279 (442)
T ss_pred             HHHHHHHHhc-CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchhhhhcCCCCce
Confidence            4667777531 1123444444 44444 99988    777755 68999999999999 45 5421    1222457998


Q ss_pred             EEEccccCCCC---CCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNA---QPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G---~P~GiG~L~Vr~~~~~  334 (344)
                      +++  =|. +|   .|  +|+++++++..+
T Consensus       280 vt~--gK~-l~gG~~P--~gav~~~~~i~~  304 (442)
T PRK13360        280 LTC--AKG-LTNGAIP--MGAVFVSSEIHD  304 (442)
T ss_pred             eee--eec-cccCccc--eEEEEEcHHHHH
Confidence            866  587 54   25  788888876543

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=95.00  E-value=0.58  Score=47.56  Aligned_cols=162  Identities=17%  Similarity=0.068  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh-hCCCCCCCeEEEc-CCcC--HHHHHHHHHc----------CCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE-SYPFFRGNFYMTI-IGEE--LDYVREFASF----------KES  223 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~-sl~~~~Gd~ivS~-~eH~--~~~ir~la~~----------~G~  223 (344)
                      ..+.-+++.+.+.. .+  .|.|+.++|||+..... +..+.....|++. -.+|  ......+...          .|+
T Consensus        95 ~~~la~~l~~~~p~-~~--~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~  171 (428)
T PRK12389         95 EIEFAKMLKEAIPS-LE--KVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGV  171 (428)
T ss_pred             HHHHHHHHHHhCCC-Cc--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCC
Confidence            34455555555531 22  79999999998776544 1122222345542 2244  2211111000          011


Q ss_pred             ------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecccc
Q 035915          224 ------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       224 ------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                            .+..+|.+      +.+.+++.+... . .....|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+|
T Consensus       172 ~~~~~~~~~~~~~~------d~~~l~~~l~~~-~-~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~  243 (428)
T PRK12389        172 PKSIAQEVITVPFN------DIEALKEALDKW-G-DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVI  243 (428)
T ss_pred             CCcccCceEEcCCC------CHHHHHHHHHhc-C-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence                  11112211      457787777532 1 23444444 45555 98888    766654 68999999999999


Q ss_pred             cCcCCccC---CCCCCCCcEEEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          291 LVVGEDRL---NLALHRPDFVLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       291 a~~G~~~L---DLs~l~~DFvv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      .-......   ..-...||++++  =|. +|+  |  +|++.++++..+.
T Consensus       244 tG~Rt~~~~a~~~~gv~PDivt~--gK~-lggG~P--i~av~~~~~i~~~  288 (428)
T PRK12389        244 TAFRFMYGGAQDLLGVEPDLTAL--GKI-IGGGLP--IGAYGGRKDIMEQ  288 (428)
T ss_pred             cccccCcchhhHHhCCCCCeeee--chh-hcCCCc--eeEEeEHHHHHhh
Confidence            84122111   111346998766  476 442  4  8889888776543

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=94.99  E-value=0.34  Score=49.69  Aligned_cols=89  Identities=11%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCc--c--CCCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGED--R--LNLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~--~--LDLs~l~~DF  307 (344)
                      +++++.+... ...+...|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+|. + |..  .  .+.....||+
T Consensus       205 ~~l~~~i~~~-~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~-GRtG~~~~~~~~gv~PDi  282 (445)
T PRK09221        205 DDLERLVALH-DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGF-GRLGAAFAAERFGVTPDI  282 (445)
T ss_pred             HHHHHHHHhc-CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC-CcCchhhHHHhcCCCCCE
Confidence            4566666531 1123444444 44454 99998    776654 689999999999995 4 531  1  1222356898


Q ss_pred             EEEccccCCC-C-CCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQN-A-QPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~-G-~P~GiG~L~Vr~~~~~  334 (344)
                      ++++  |.|- | .|  +|+++++++..+
T Consensus       283 ~~~g--K~l~gG~~P--i~av~~~~~i~~  307 (445)
T PRK09221        283 ITFA--KGLTNGAIP--MGAVIASDEIYD  307 (445)
T ss_pred             EEec--cccccCccc--ceeeEEcHHHHH
Confidence            8775  5512 2 25  788888876544

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=94.82  E-value=1.9  Score=44.19  Aligned_cols=76  Identities=12%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             CeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCC--C
Q 035915          254 PKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNA--Q  319 (344)
Q Consensus       254 ~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G--~  319 (344)
                      .+..|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-    .+.-...||++++  =|. +|  .
T Consensus       207 ~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~-GrtG~~~a~~~~gv~pDi~t~--gK~-l~~G~  282 (445)
T PRK08593        207 EVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL-GRTGKWSSISHFNITPDLMSF--GKS-LAGGM  282 (445)
T ss_pred             ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC-CcCchHHHHHhcCCCCCEeee--ccc-ccCCc
Confidence            3545554 44444 88766    555544 689999999999984 4 5321    1112346898876  466 44  2


Q ss_pred             CCceEEEEEeCCCccc
Q 035915          320 PSKITCLLIRKKSFDT  335 (344)
Q Consensus       320 P~GiG~L~Vr~~~~~~  335 (344)
                      |  +|+++.+++..+.
T Consensus       283 p--~gav~~~~~i~~~  296 (445)
T PRK08593        283 P--MSAIVGRKEIMES  296 (445)
T ss_pred             c--cEEEEEcHHHHhh
Confidence            4  8889988776543

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=94.71  E-value=0.28  Score=52.77  Aligned_cols=161  Identities=15%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHH-----HHHHHHhhCCCCCCC--e---EEEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRD-----AMMLVGESYPFFRGN--F---YMTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTe-----Alnlva~sl~~~~Gd--~---ivS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      +.+..+.+...-|-+    .+.|-+|.-.     ++ .++++|...+|+  .   ++...-|..|...  |.-.|.+|+.
T Consensus       584 f~~Le~~Lc~iTG~D----~~s~QPNsGA~GEYaGL-~~IRaY~~~kge~hRnvClIPvSAHGTNPAS--A~Magmkvvp  656 (1001)
T KOG2040|consen  584 FTELEKDLCEITGFD----SFSLQPNSGAQGEYAGL-RVIRAYLESKGEGHRNVCLIPVSAHGTNPAS--AAMAGMKVVP  656 (1001)
T ss_pred             HHHHHHHhheeeccc----ceeecCCCCcccchhhH-HHHHHHHHhccCCcceeEEEeecccCCChhh--HHhcCCEEEE
Confidence            455555666666653    5888876543     23 345666444443  2   2322234444321  2335999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC--ccc-ccccc-HHH-HHHHHhCCcEEEecccccCcCCccC-CCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA--DIN-GTRYS-MHW-ISEAHRNSWHVLLDATALVVGEDRL-NLA  301 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a--vSN-G~i~P-l~~-Ia~ar~~g~~vlvDAaQa~~G~~~L-DLs  301 (344)
                      +..+. +|.|+..+|+.......    ..|.+++.  -|+ |+--+ ++. +..+|++|-.|.+|+|-.= .+.-| .-.
T Consensus       657 V~~~~-~G~id~~dLk~kaekh~----~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMN-AqVGlc~pG  730 (1001)
T KOG2040|consen  657 VGCDA-NGNIDMVDLKAKAEKHK----DNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMN-AQVGLCRPG  730 (1001)
T ss_pred             eeccC-CCCccHHHHHHHHHHhh----hhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCcc-ceecccCCc
Confidence            98887 58999999988776532    23444442  244 76543 444 4567999999999999764 32221 123


Q ss_pred             CCCCcEEEEccccCCCCCCC-----ceEEEEEeCCC
Q 035915          302 LHRPDFVLCNLDNTQNAQPS-----KITCLLIRKKS  332 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~-----GiG~L~Vr~~~  332 (344)
                      +.+.|.--.++||. |+-|-     |+|=+-|++.+
T Consensus       731 d~GaDV~HLNLHKT-FcIPHGGGGPg~gPIgVK~HL  765 (1001)
T KOG2040|consen  731 DIGADVCHLNLHKT-FCIPHGGGGPGMGPIGVKKHL  765 (1001)
T ss_pred             cccccceeecccce-eeecCCCCCCCCCccchhhhc
Confidence            57899999999998 64333     66666666543

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=94.53  E-value=0.77  Score=47.67  Aligned_cols=88  Identities=14%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEE-eCccc-cccccH-H---HHH-HHHhCCcEEEecccccCcCCccCCC------CCCC
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYSM-H---WIS-EAHRNSWHVLLDATALVVGEDRLNL------ALHR  304 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl-~---~Ia-~ar~~g~~vlvDAaQa~~G~~~LDL------s~l~  304 (344)
                      +.+.|++.+...  ......|.+ +.+++ |.+.|. +   .+. .|+++|+++++|=+|.  |- +...      -...
T Consensus       232 d~~~l~~~l~~~--~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t--Gf-R~g~~ga~~~~gv~  306 (474)
T PLN02482        232 DLEAVKKLFEAN--KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT--GF-RIAYGGAQEYFGIT  306 (474)
T ss_pred             ChHHHHHHHHhC--CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc--Ce-ecCcchHhHHhCCC
Confidence            456788777532  123444444 45556 888885 3   343 3588999999999994  43 2221      1246


Q ss_pred             CcEEEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      ||.+++  =|. +|+  |  +|++..++++.+.
T Consensus       307 PDi~t~--gK~-lggG~P--igav~g~~ei~~~  334 (474)
T PLN02482        307 PDLTTL--GKV-IGGGLP--VGAYGGRREIMEM  334 (474)
T ss_pred             CCEEEe--cch-hhCCCc--eEEEEEcHHHHHh
Confidence            998776  587 553  5  8999888776543

>PRK07678 aminotransferase; Validated

Probab=94.52  E-value=0.73  Score=47.29  Aligned_cols=86  Identities=10%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             HHHHhhhcCCCCCeeEEEE-eCccc-cccccH----HHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEE
Q 035915          242 LSQYFRRKCKHTPKGLFSY-PADIN-GTRYSM----HWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVL  309 (344)
Q Consensus       242 L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl----~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv  309 (344)
                      +++.|.... ..+..-|.+ |.+.+ |.+.|-    +.+.+ |+++|+++++|=+|. + |..-    .+--...||+++
T Consensus       202 l~~~~~~~~-~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGf-GRtG~~~~~~~~gv~PDivt  279 (451)
T PRK07678        202 IDRVMTWEL-SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGF-GRTGKAFGFMNYGVKPDIIT  279 (451)
T ss_pred             HHHHHHhcC-CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcC-CcCchhHHHHhcCCCCCEEE
Confidence            455564211 123433333 55555 888773    34433 588999999999995 5 5421    121235699998


Q ss_pred             EccccCCCCC---CCceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      +  =|. +|+   |  +|++.+++++.+
T Consensus       280 ~--gK~-lggG~~P--i~av~~~~~i~~  302 (451)
T PRK07678        280 M--AKG-ITSAYLP--LSATAVKKEIYE  302 (451)
T ss_pred             e--ecc-cccCCcc--eeEEEEcHHHHH
Confidence            8  476 442   6  899999887654

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=94.45  E-value=2.3  Score=43.18  Aligned_cols=172  Identities=9%  Similarity=0.031  Sum_probs=85.0

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEcC-CcC--HHHHHHHH-----HcCCc-----EE
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTII-GEE--LDYVREFA-----SFKES-----KV  225 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~~-eH~--~~~ir~la-----~~~G~-----kV  225 (344)
                      +.-+++++++... ....++|+.++|||+...+.- ..+.....|++.. .+|  ......+.     .+.+.     .+
T Consensus        87 ~la~~l~~~~p~~-~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~  165 (421)
T PRK09792         87 TLAEKINALAPVS-GQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSV  165 (421)
T ss_pred             HHHHHHHHhCCCC-CCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCc
Confidence            3334456665421 123799999999987754431 1122223455433 244  21111110     01111     13


Q ss_pred             EEEeCCCCCCcc----CHHHHHHHhhhcCCCCCeeEEEE-eCccc-cccc-cH---HHHHH-HHhCCcEEEecccccCcC
Q 035915          226 ILAPEAWLDLRI----KGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRY-SM---HWISE-AHRNSWHVLLDATALVVG  294 (344)
Q Consensus       226 ~~vp~~~~~g~i----~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~-Pl---~~Ia~-ar~~g~~vlvDAaQa~~G  294 (344)
                      ..+|.......+    +.+.+++.+.......+...|.+ +.+++ |.+. |-   +.+.+ |+++|+++++|=+|.-.|
T Consensus       166 ~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g  245 (421)
T PRK09792        166 YHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA  245 (421)
T ss_pred             EEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            333432110011    23567776652111123445554 44444 7665 64   44433 588999999999988324


Q ss_pred             Ccc--CCCC--CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          295 EDR--LNLA--LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       295 ~~~--LDLs--~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ..-  +-+.  ...+|++++  =|. +++=--+|+++.++++.+.
T Consensus       246 r~G~~~a~~~~~~~pDi~t~--gK~-l~~G~pigav~~~~~i~~~  287 (421)
T PRK09792        246 RTGKLFAMDHYADKPDLMTM--AKS-LAGGMPLSGVVGNANIMDA  287 (421)
T ss_pred             CCCchhHHHhcCCCCcEEEe--ehh-hcCCCceEEEEEcHHHHhc
Confidence            321  1112  246897655  687 5421238999988776543

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=94.42  E-value=1.5  Score=44.73  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             eeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCCCCCCce
Q 035915          255 KGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKI  323 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~Gi  323 (344)
                      +..|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|=+|.-.|..-    .+.-...||.++++  |. +|+=--+
T Consensus       220 iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~-l~~G~Pi  296 (443)
T PRK06058        220 LAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KG-IAGGLPL  296 (443)
T ss_pred             eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--cc-ccCCCcc
Confidence            444444 44445 77765    455543 589999999999987214221    12223569999997  98 5520128


Q ss_pred             EEEEEeCCCccc
Q 035915          324 TCLLIRKKSFDT  335 (344)
Q Consensus       324 G~L~Vr~~~~~~  335 (344)
                      |+++.+++..+.
T Consensus       297 ~av~~~~~i~~~  308 (443)
T PRK06058        297 SAVTGRAEIMDA  308 (443)
T ss_pred             EEEEEcHHHHhh
Confidence            999998876554

>PRK07480 putative aminotransferase; Validated

Probab=94.25  E-value=0.83  Score=47.05  Aligned_cols=73  Identities=11%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             EEEEeCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCC---CCc
Q 035915          257 LFSYPADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQ---PSK  322 (344)
Q Consensus       257 LVa~~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~---P~G  322 (344)
                      ++.=|.+.+ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-    .+.-...||++++  =|. +++   |  
T Consensus       223 vi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGf-GRtG~~~a~~~~gv~PDiv~~--gK~-l~gG~~P--  296 (456)
T PRK07480        223 FIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF-GRTGEWFGSQHFGIKPDLMTI--AKG-LTSGYIP--  296 (456)
T ss_pred             EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CcCcchhhhhhcCCCCCeeee--ehh-hccCCcc--
Confidence            333355555 88877    455544 689999999999996 4 5322    1222457999887  476 442   5  


Q ss_pred             eEEEEEeCCCccc
Q 035915          323 ITCLLIRKKSFDT  335 (344)
Q Consensus       323 iG~L~Vr~~~~~~  335 (344)
                      +|+++++++..+.
T Consensus       297 i~av~~~~~i~~~  309 (456)
T PRK07480        297 MGAVGVGDRVAEV  309 (456)
T ss_pred             ceEEEEcHHHHHH
Confidence            8999998876543

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=94.19  E-value=0.64  Score=47.45  Aligned_cols=161  Identities=11%  Similarity=0.034  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCC-CCeEEEcCC--cC------HHHHHH-HHHcCC-
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFR-GNFYMTIIG--EE------LDYVRE-FASFKE-  222 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~-Gd~ivS~~e--H~------~~~ir~-la~~~G-  222 (344)
                      ..++.-+.++++.+ ..+  .|.|..++|||+..++.   -+...+ ..+|++...  |.      +.+++. +.+..+ 
T Consensus        85 ~~~~la~~L~~~s~-~~d--~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~P  161 (404)
T COG4992          85 PQAELAEKLVELSP-FAD--RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGP  161 (404)
T ss_pred             HHHHHHHHHHhhCc-ccc--EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCC
Confidence            33445555666665 333  79999999999876544   222111 224543322  22      112222 111111 


Q ss_pred             --cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH-HHHH---H-HHhCCcEEEecccccCc
Q 035915          223 --SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM-HWIS---E-AHRNSWHVLLDATALVV  293 (344)
Q Consensus       223 --~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl-~~Ia---~-ar~~g~~vlvDAaQa~~  293 (344)
                        -.+..+|.+      |.+.+++++++     .|.-|.+--+..  |++.|- +.+.   + |+++|+++++|=+|.=+
T Consensus       162 l~~g~~~vpfn------Di~al~~ai~~-----~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~  230 (404)
T COG4992         162 LLPGFRHVPFN------DIEALEAAIDE-----DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGL  230 (404)
T ss_pred             CCCCceecCCC------CHHHHHHHhcc-----CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCC
Confidence              124455654      46789999986     355555543443  777765 4443   2 57899999999999843


Q ss_pred             CCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          294 GEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      |..-    .......||.++.  =|- +|+=--+|++++++...+
T Consensus       231 GRTGk~fA~e~~gV~PDI~tl--aK~-LgGG~PigA~la~~~~~~  272 (404)
T COG4992         231 GRTGKLFAYEHYGVEPDILTL--AKA-LGGGFPIGAMLATEEIAS  272 (404)
T ss_pred             CccchHHHHHHhCCCCCEEEe--ecc-ccCCccceeeEEchhhhh
Confidence            4321    1122456998876  477 444244999999855444

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=94.19  E-value=0.49  Score=48.24  Aligned_cols=148  Identities=14%  Similarity=0.061  Sum_probs=88.3

Q ss_pred             ccchHHHHHHhhccCCCChhhh-hhHHHHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE
Q 035915          132 TQLEPSRLLDILTKKSSFPGSF-ISIPEIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM  204 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss~~g~~-as~~le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv  204 (344)
                      +...+.++++..-|   +.|+. .+.-++-.|+.||+|+-      ++|+  +|.+|.||+.|++.++.-+--.+.+-++
T Consensus        91 ai~RA~~~L~~~gG---s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~--dI~LT~GAS~ai~~il~l~~~~~~~Gvl  165 (475)
T KOG0258|consen   91 AIKRAKRILNDCGG---SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPE--DIFLTTGASPAIRSILSLLIAGKKTGVL  165 (475)
T ss_pred             HHHHHHHHHHhcCC---cccccccccCChhHHHHHHHHHHhccCCCCCHH--HeeecCCCcHHHHHHHHHHhcCCCCceE
Confidence            44445666654444   33333 23456778999999985      3454  7999999999999888765433444465


Q ss_pred             EcC-CcC--HHHHHHHHHcCCcEEEE-EeC--CCCCCccCHHHHHHHhhhcCCCCCe-eEEEEeCcc-ccccccHHHHHH
Q 035915          205 TII-GEE--LDYVREFASFKESKVIL-APE--AWLDLRIKGSQLSQYFRRKCKHTPK-GLFSYPADI-NGTRYSMHWISE  276 (344)
Q Consensus       205 S~~-eH~--~~~ir~la~~~G~kV~~-vp~--~~~~g~i~~~~L~~~l~~~~~~~~t-~LVa~~avS-NG~i~Pl~~Ia~  276 (344)
                      ..+ -++  +..+..   ..+..|-+ +..  +|   .++.++|++.+....+.-+. .||++.--| +|..+.-+-|..
T Consensus       166 iPiPQYPLYsAti~l---~~~~~v~YyLdEe~~W---~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~  239 (475)
T KOG0258|consen  166 IPIPQYPLYSATISL---LGGTQVPYYLDEESNW---SLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEG  239 (475)
T ss_pred             eecCCCchhHHHHHH---hCCcccceeeccccCC---CCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHH
Confidence            443 355  223322   22444444 433  45   36788898887653333333 444443333 498887765543


Q ss_pred             ----HHhCCcEEEecccc
Q 035915          277 ----AHRNSWHVLLDATA  290 (344)
Q Consensus       277 ----ar~~g~~vlvDAaQ  290 (344)
                          |++.|..++-|=+.
T Consensus       240 i~~fa~~~~l~llaDEVY  257 (475)
T KOG0258|consen  240 IICFAAEEGLVLLADEVY  257 (475)
T ss_pred             HHHHHHHcCeEEechHHH
Confidence                47889988888653

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=94.18  E-value=3.4  Score=42.12  Aligned_cols=175  Identities=8%  Similarity=-0.041  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEcC-CcC--HHHHHHH-----HHcCCc----
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTII-GEE--LDYVREF-----ASFKES----  223 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~~-eH~--~~~ir~l-----a~~~G~----  223 (344)
                      ...+.-+++++++.-... ..|.|+.++|||+...+.- ..+.....|++.. .+|  ......+     ..+.+.    
T Consensus        84 ~~~~la~~l~~~~p~~~~-~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~  162 (425)
T PRK07495         84 NYVRLAERLNALVPGDFA-KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMM  162 (425)
T ss_pred             HHHHHHHHHHHhCCCCCC-CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCC
Confidence            344455556666642211 2799999999987654431 1122223455432 234  1111111     011111    


Q ss_pred             -EEEEEeCCCCCCccC----HHHHHHHhhhcCCCCCeeEEEE-eCccc-cccc-cHHHH---H-HHHhCCcEEEeccccc
Q 035915          224 -KVILAPEAWLDLRIK----GSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRY-SMHWI---S-EAHRNSWHVLLDATAL  291 (344)
Q Consensus       224 -kV~~vp~~~~~g~i~----~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~-Pl~~I---a-~ar~~g~~vlvDAaQa  291 (344)
                       .+..+|.......++    .+.+++.+.......+...|.+ |.+.| |.+. |-+.+   . .|+++|+++++|=+|.
T Consensus       163 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  242 (425)
T PRK07495        163 PDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT  242 (425)
T ss_pred             CCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence             233444432110111    3344665542111123444444 45556 7554 44433   3 3578999999999987


Q ss_pred             CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          292 VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       292 ~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      -.|...    .+.....||++++  =|. +++---+|++..+++..+.
T Consensus       243 G~gr~G~~~a~~~~gv~pDi~tl--sK~-l~~G~pigav~~~~~i~~~  287 (425)
T PRK07495        243 GFARTGKLFAMEHHEVAADLTTM--AKG-LAGGFPLAAVTGRAEIMDA  287 (425)
T ss_pred             cCCcCCCceeecccCCCCCEEee--hhh-hcCCccceEEEEcHHHHhc
Confidence            214332    1212346888776  477 4421128999988776543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=94.04  E-value=0.72  Score=47.51  Aligned_cols=112  Identities=16%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             CCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC-HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcC---
Q 035915          175 EYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE-LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKC---  250 (344)
Q Consensus       175 ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~-~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~---  250 (344)
                      +++|+.|.|.|.|+-.+.+.+ ..+|+.++... |- ..++.. .+..|++++.|+.|.+ | ++.+.|++.++...   
T Consensus       124 ~wdiiit~G~t~~l~~~l~~~-~N~gd~vlie~-~ty~~AL~s-~~a~gv~~ipv~md~~-G-i~pE~l~~il~~w~~~~  198 (472)
T KOG0634|consen  124 NWDIIITNGNTDGLFKVLRTL-INRGDHVLIEE-YTYPSALQS-MEALGVKIIPVKMDQD-G-IDPESLEEILSNWKPGS  198 (472)
T ss_pred             CceEEEecCCchHHHHHHHHh-hcCCCceEEec-ccchHHHHh-ccccCceEEeccccCC-C-CCHHHHHHHHhcCCccc
Confidence            458999999999999998876 45777765432 22 222333 2446888877777653 4 78899988875321   


Q ss_pred             --CCCCeeEEEEeCccc--cccccHHHH----HHHHhCCcEEEeccccc
Q 035915          251 --KHTPKGLFSYPADIN--GTRYSMHWI----SEAHRNSWHVLLDATAL  291 (344)
Q Consensus       251 --~~~~t~LVa~~avSN--G~i~Pl~~I----a~ar~~g~~vlvDAaQa  291 (344)
                        +..+.-|-+++.-.|  |..++++.-    ..||+++.+++-|=.=.
T Consensus       199 ~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy  247 (472)
T KOG0634|consen  199 YKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYY  247 (472)
T ss_pred             ccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccc
Confidence              112345777775445  999999643    35689999998875443

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=93.78  E-value=2.1  Score=44.15  Aligned_cols=195  Identities=14%  Similarity=0.131  Sum_probs=97.2

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRG  200 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~G  200 (344)
                      +|=.-|.  .+++..+.+....+..+    ........+.-++++++++...+  .|.|++++|||+..+..- ..+...
T Consensus        85 lGh~~p~--v~~Ai~~ql~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~--~v~f~~sGseAve~AlklAr~~tgr  156 (459)
T PRK06082         85 LGYGHPH--VIEKVKEQMAKLPFSPR----RFTNETAIECAEKLTEIAGGELN--RVLFAPGGTSAIGMALKLARHITGN  156 (459)
T ss_pred             cCCCCHH--HHHHHHHHHHhCCCccC----ccCCHHHHHHHHHHHHhCCCCCC--EEEECCCcHHHHHHHHHHHHHhcCC
Confidence            5644354  45555555544222111    23344455666677777753222  799999999987764431 111222


Q ss_pred             CeEEEcCC--cC-H-HHHHHHHH----cCC-----cEEEEEeCCC------CCCc----cCHHHHHHHhhhcCCCCCeeE
Q 035915          201 NFYMTIIG--EE-L-DYVREFAS----FKE-----SKVILAPEAW------LDLR----IKGSQLSQYFRRKCKHTPKGL  257 (344)
Q Consensus       201 d~ivS~~e--H~-~-~~ir~la~----~~G-----~kV~~vp~~~------~~g~----i~~~~L~~~l~~~~~~~~t~L  257 (344)
                      ..+++..+  |. . .++. +..    +.+     ..+..+|...      .+..    -+.++|++.+...   .....
T Consensus       157 ~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~vAa  232 (459)
T PRK06082        157 FKVVSLWDSFHGASLDAIS-VGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE---GGIGA  232 (459)
T ss_pred             CEEEEEeCCCcCccHHHHh-hcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC---CCEEE
Confidence            44554322  33 2 1221 110    000     1122333210      0000    0123466666531   23444


Q ss_pred             EEE-eCccccc-ccc---HHHHHH-HHhCCcEEEecccccCcCCcc-C---CCCCCCCcEEEEccccCCCCC---CCceE
Q 035915          258 FSY-PADINGT-RYS---MHWISE-AHRNSWHVLLDATALVVGEDR-L---NLALHRPDFVLCNLDNTQNAQ---PSKIT  324 (344)
Q Consensus       258 Va~-~avSNG~-i~P---l~~Ia~-ar~~g~~vlvDAaQa~~G~~~-L---DLs~l~~DFvv~S~HK~l~G~---P~GiG  324 (344)
                      |.+ +.++.|. ..|   ++.+.+ |+++|+++++|=+|.-.|..- .   ..-...||++++  =|. +|+   |  +|
T Consensus       233 vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~--gKg-l~gG~~P--~~  307 (459)
T PRK06082        233 FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCI--GKG-LGGGLVP--IA  307 (459)
T ss_pred             EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEe--ccc-ccCCCCc--ce
Confidence            444 3333454 455   445544 589999999999988324321 1   122356999985  687 443   5  78


Q ss_pred             EEEEeCCCc
Q 035915          325 CLLIRKKSF  333 (344)
Q Consensus       325 ~L~Vr~~~~  333 (344)
                      +++++++..
T Consensus       308 av~~~~~i~  316 (459)
T PRK06082        308 AMITKDKYN  316 (459)
T ss_pred             EEEEcHHHH
Confidence            888887654

>PRK07481 hypothetical protein; Provisional

Probab=93.64  E-value=1.3  Score=45.35  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             eeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCCCC--CC
Q 035915          255 KGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQNAQ--PS  321 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~--P~  321 (344)
                      ...|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|=+|.-.|..-    .+.-...||+++++  |.|-||  | 
T Consensus       214 iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~P-  290 (449)
T PRK07481        214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVP-  290 (449)
T ss_pred             EEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcC-
Confidence            444444 44444 88766    344443 588999999999988215321    12234579999884  762322  5 


Q ss_pred             ceEEEEEeCCCccc
Q 035915          322 KITCLLIRKKSFDT  335 (344)
Q Consensus       322 GiG~L~Vr~~~~~~  335 (344)
                       +|+++++++..+.
T Consensus       291 -i~av~~~~~i~~~  303 (449)
T PRK07481        291 -LGATMVNARIADA  303 (449)
T ss_pred             -ceEEEEcHHHHHH
Confidence             8999998876543

>PLN00144 acetylornithine transaminase

Probab=93.53  E-value=1.9  Score=43.05  Aligned_cols=91  Identities=13%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CHHHHHHHhhhcCCCCCee-EEEEeCcccccccc-----HHHHH-HHHhCCcEEEecccccCcCCcc----CCCCCCCCc
Q 035915          238 KGSQLSQYFRRKCKHTPKG-LFSYPADINGTRYS-----MHWIS-EAHRNSWHVLLDATALVVGEDR----LNLALHRPD  306 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~-LVa~~avSNG~i~P-----l~~Ia-~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~D  306 (344)
                      +.+.|++.+.+    .+.. ++.-|.+++|..++     ++.+. .|+++|+++++|=+|.-.|...    .++....||
T Consensus       155 d~~~l~~~~~~----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD  230 (382)
T PLN00144        155 NLEAARKLIQK----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD  230 (382)
T ss_pred             CHHHHHHhcCC----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC
Confidence            45677777743    1344 44445543444444     33343 3588999999999987324332    124456799


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .+++  =|. +++=--+|+++++++..+.
T Consensus       231 i~t~--sK~-l~~G~pig~v~~~~~~~~~  256 (382)
T PLN00144        231 IMTL--AKP-LAGGLPIGAVLVTEKVASA  256 (382)
T ss_pred             EEEe--ccc-ccCCcceEEEEEcHHHHhc
Confidence            5555  688 4411238999998776654

>PRK07046 aminotransferase; Validated

Probab=93.52  E-value=1.5  Score=45.23  Aligned_cols=161  Identities=13%  Similarity=0.050  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEcCC-cC--HH-HHHHHHH-----cC---C
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTIIG-EE--LD-YVREFAS-----FK---E  222 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~~e-H~--~~-~ir~la~-----~~---G  222 (344)
                      ....+.-+++.+.+++  +  .|.|+.++|||.....+- ..+...+.|++..+ +|  .+ .+-....     +.   |
T Consensus       115 ~~~~~lAe~l~~~~~~--~--~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g  190 (453)
T PRK07046        115 EDAAWVGEELARRFGL--P--YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLG  190 (453)
T ss_pred             HHHHHHHHHHHHHhCC--C--EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCC
Confidence            3444555566666653  3  699999999987764431 11222344554322 33  22 1111100     00   1


Q ss_pred             c------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-cccccH----HHHHH-HHhCCcEEEeccc
Q 035915          223 S------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYSM----HWISE-AHRNSWHVLLDAT  289 (344)
Q Consensus       223 ~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl----~~Ia~-ar~~g~~vlvDAa  289 (344)
                      .      .+..+|.+      +.+++++.+..    .+...|.+ +.+.+ |.+.|-    +.+.+ |+++|+++++|=+
T Consensus       191 ~~~~~~~~~~~~~~n------d~~~l~~~l~~----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV  260 (453)
T PRK07046        191 QVHDLTATTRVVEFN------DLAALEAALAD----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDET  260 (453)
T ss_pred             CCccccCceEeeCCC------CHHHHHHHhCC----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence            1      11112221      46778877742    13444444 45555 888773    44543 6889999999999


Q ss_pred             cc----CcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          290 AL----VVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       290 Qa----~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |.    . |-.. ..-...||++++  =|. +|+=--+|++..|++..+.
T Consensus       261 ~tfr~g~-Gg~~-~~~gv~PDi~t~--gK~-lggG~Pi~av~g~~~i~~~  305 (453)
T PRK07046        261 HTISSGP-GGYT-RAHGLEPDFLVV--GKP-IAGGVPCAVYGFSAELAER  305 (453)
T ss_pred             ccCccCC-cchh-HHhCCCccceee--hhh-hcCCCcceeeeehHHHHHH
Confidence            95    3 3221 112357999986  576 4321228999998876554

>PRK07036 hypothetical protein; Provisional

Probab=93.35  E-value=1.7  Score=44.82  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             CeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc--CCC---CCCCCcEEEEccccCCCCC-
Q 035915          254 PKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR--LNL---ALHRPDFVLCNLDNTQNAQ-  319 (344)
Q Consensus       254 ~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~--LDL---s~l~~DFvv~S~HK~l~G~-  319 (344)
                      +...|.+ |.+.+ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-  +-.   -...||+++++  |. +|+ 
T Consensus       220 ~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGf-GRtG~~~~~~~~~gv~PDivt~g--K~-l~gG  295 (466)
T PRK07036        220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGF-GRLGHFFASEAVFGIQPDIITFA--KG-LTSG  295 (466)
T ss_pred             ceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC-CcCchhhhhhhhcCCCCCEEEEc--cc-cccC
Confidence            3444444 44555 88888    556654 689999999999995 4 5421  111   13569998884  76 443 


Q ss_pred             --CCceEEEEEeCCCcc
Q 035915          320 --PSKITCLLIRKKSFD  334 (344)
Q Consensus       320 --P~GiG~L~Vr~~~~~  334 (344)
                        |  +|++++++++.+
T Consensus       296 ~~P--i~av~~~~~i~~  310 (466)
T PRK07036        296 YQP--LGAVIISERLLD  310 (466)
T ss_pred             ccc--cEEEEEcHHHHH
Confidence              5  899999987654

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=93.23  E-value=2.8  Score=42.93  Aligned_cols=88  Identities=15%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEE-eCccc-cccccHH----HHH-HHHhCCcEEEecccccCcCCccCC------CCCCC
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYSMH----WIS-EAHRNSWHVLLDATALVVGEDRLN------LALHR  304 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl~----~Ia-~ar~~g~~vlvDAaQa~~G~~~LD------Ls~l~  304 (344)
                      +.+++++.+... . .+...|.+ +.+++ |.+.|..    .+. .|+++|+++++|=+|.  |- +..      .-...
T Consensus       187 d~~~l~~~l~~~-~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t--G~-R~G~~ga~~~~gv~  261 (433)
T PRK00615        187 DFQIFQTVMNSL-G-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT--GF-RVAQGGAAAIYHVK  261 (433)
T ss_pred             CHHHHHHHHHhc-C-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc--cc-cccHhHHHHhcCCC
Confidence            456788777532 1 23445554 44555 8888853    454 3688999999999994  43 111      12347


Q ss_pred             CcEEEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      ||++++  =|. +|+  |  +|++..+++..+.
T Consensus       262 PDi~~~--gK~-lggG~p--~~av~~~~~i~~~  289 (433)
T PRK00615        262 PDITVY--GKI-LGGGLP--AAAVVAHKSIMDH  289 (433)
T ss_pred             CCeEEE--ccc-ccCCcc--eeeeeecHHHHhh
Confidence            999875  687 652  5  7888888876543

>PRK07482 hypothetical protein; Provisional

Probab=93.16  E-value=1.4  Score=45.48  Aligned_cols=91  Identities=12%  Similarity=0.137  Sum_probs=53.6

Q ss_pred             HHHHHHHhhhcCCCCCeeEEEE-eCccc-cccccH-HHHH----HHHhCCcEEEecccccCcCCcc----CCCCCCCCcE
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYSM-HWIS----EAHRNSWHVLLDATALVVGEDR----LNLALHRPDF  307 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DF  307 (344)
                      .+.|++.+... ......-|.+ |.+.+ |.+.|- +.+.    .|+++|+++++|=+|.-.|..-    .+.-...||+
T Consensus       206 ~~~l~~~~~~~-~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDi  284 (461)
T PRK07482        206 ADELEELILAE-GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDL  284 (461)
T ss_pred             HHHHHHHHHhc-CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCE
Confidence            35566666421 1123333333 44444 877554 4443    3588999999999998214321    1122457999


Q ss_pred             EEEccccCCCCC--CCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQ--PSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~--P~GiG~L~Vr~~~~~  334 (344)
                      +++  =|.|-||  |  +|+++++++..+
T Consensus       285 v~~--gKgl~gG~~P--i~av~~~~~i~~  309 (461)
T PRK07482        285 ITV--AKGLTSAYAP--LSGSIVGEKVWD  309 (461)
T ss_pred             EEE--ccccccCccc--cceeeecHHHHH
Confidence            998  4773332  5  788888877643

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=92.89  E-value=1.3  Score=45.65  Aligned_cols=159  Identities=14%  Similarity=0.086  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHH---HhhCCCCCCCeEEEcCC-cC--HHHHHHHHH----------c
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLV---GESYPFFRGNFYMTIIG-EE--LDYVREFAS----------F  220 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlv---a~sl~~~~Gd~ivS~~e-H~--~~~ir~la~----------~  220 (344)
                      .++-| +.|.+.+..- +  .|=|++++|||.+.+   +++|.  ..+.|+---+ +|  .+.+..-+.          .
T Consensus        95 Ei~~A-ell~~~~p~~-e--~vrfvnSGTEAtmsAiRlARa~T--gR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s  168 (432)
T COG0001          95 EVELA-ELLIERVPSI-E--KVRFVNSGTEATMSAIRLARAYT--GRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSS  168 (432)
T ss_pred             HHHHH-HHHHHhcCcc-c--EEEEecchhHHHHHHHHHHHHhh--CCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCC
Confidence            34444 6666666642 2  699999999998764   44552  3344442111 22  333321110          0


Q ss_pred             CCc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCe-eEEEEeCccc-cccccHH----HHHH-HHhCCcEEEec
Q 035915          221 KES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPK-GLFSYPADIN-GTRYSMH----WISE-AHRNSWHVLLD  287 (344)
Q Consensus       221 ~G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t-~LVa~~avSN-G~i~Pl~----~Ia~-ar~~g~~vlvD  287 (344)
                      .|+      .+..+|.+      |.+.+++++... . .+. .++.=|.+.| |.+.|-+    .+.+ ++++|++++.|
T Consensus       169 ~Gvp~~~a~~ti~~~yN------D~~al~~~~~~~-g-~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~D  240 (432)
T COG0001         169 PGVPADVAKHTLVLPYN------DLEALEEAFEEY-G-DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFD  240 (432)
T ss_pred             CCCChhhhccEEEecCC------CHHHHHHHHHHc-C-CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Confidence            011      23334443      467788888752 1 123 3444456668 9999973    3333 48899999999


Q ss_pred             ccccCcCCccCCCC------CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          288 ATALVVGEDRLNLA------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa~~G~~~LDLs------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      =+..-   .++.+.      .+.||+.++  =|+ .|+=--+|++-.|++..+.
T Consensus       241 EViTG---FR~~~gGaq~~~gi~PDlttl--GKi-IGGGlP~ga~gGr~eiM~~  288 (432)
T COG0001         241 EVITG---FRVALGGAQGYYGVEPDLTTL--GKI-IGGGLPIGAFGGRAEIMEQ  288 (432)
T ss_pred             cchhh---cccCCcccccccCcCcchhhh--hhh-hcCCcceeeeccHHHHHhh
Confidence            88774   344432      256898776  488 6653348888888877664

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=92.74  E-value=2.2  Score=44.09  Aligned_cols=88  Identities=20%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-e-Cccc-cccccH-HHH---HH-HHhCCcEEEeccccc-CcCCccC----CCCCCCCc
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-P-ADIN-GTRYSM-HWI---SE-AHRNSWHVLLDATAL-VVGEDRL----NLALHRPD  306 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~-avSN-G~i~Pl-~~I---a~-ar~~g~~vlvDAaQa-~~G~~~L----DLs~l~~D  306 (344)
                      +.+++.+...  ..+..-|.+ + .+.+ |.+.|- +.+   .+ |+++|+++++|=+|. + |..--    +.-...||
T Consensus       202 ~~le~~~~~~--~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGf-GRtG~~~a~~~~gv~PD  278 (466)
T PRK07030        202 AHMEQTLAEH--HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGF-GRTGTMFACEQAGIRPD  278 (466)
T ss_pred             HHHHHHHHhC--CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCc-CccccchHHHhcCCCCC
Confidence            4456666521  123444444 4 3444 877664 333   33 588999999999987 4 53211    22245799


Q ss_pred             EEEEccccCCCCC--CCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQ--PSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~--P~GiG~L~Vr~~~~~  334 (344)
                      +++++  |.|-||  |  +|++++++++.+
T Consensus       279 iv~~g--Kgl~gG~~P--i~av~~~~ei~~  304 (466)
T PRK07030        279 FLCLS--KALTGGYLP--LAAVLTTDTVYQ  304 (466)
T ss_pred             EEeee--hhccCCccc--ceEEEecHHHHH
Confidence            99994  652333  5  899999987654

>PRK07483 hypothetical protein; Provisional

Probab=92.60  E-value=2.7  Score=43.05  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             HHHHHHhhhcCCCCCee-EEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCc
Q 035915          240 SQLSQYFRRKCKHTPKG-LFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPD  306 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~-LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~D  306 (344)
                      ++|++.+... ...+.. ++.=+.+. + |.+.|    ++.+.+ |+++|+++++|=+|. + |..-    .+.-...||
T Consensus       186 ~~l~~~~~~~-~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf-GRtG~~~a~~~~gv~PD  263 (443)
T PRK07483        186 DELEAKILEL-GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGM-GRTGTLFACEEDGVAPD  263 (443)
T ss_pred             HHHHHHHHhc-CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCc-ccCcHHHHHhhcCCCCC
Confidence            4555555421 112343 34445553 4 77766    344433 589999999999998 4 4321    111235799


Q ss_pred             EEEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          307 FVLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       307 Fvv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      .++++  |.|-||  |  +|++++++++.+.
T Consensus       264 iv~~g--K~l~gG~~P--i~av~~~~~i~~~  290 (443)
T PRK07483        264 LVTIA--KGLGAGYQP--IGAVLASDRIYDA  290 (443)
T ss_pred             eeeeh--hhhccCccc--cEEEEEcHHHHHH
Confidence            99984  652332  5  8999999876543

>PRK05965 hypothetical protein; Provisional

Probab=92.31  E-value=3.1  Score=42.82  Aligned_cols=91  Identities=12%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             HHHHHHhhhcCCCCCee-EEEEeCccc-cccccH-HHHH----HHHhCCcEEEecccccCcCCcc----CCCCCCCCcEE
Q 035915          240 SQLSQYFRRKCKHTPKG-LFSYPADIN-GTRYSM-HWIS----EAHRNSWHVLLDATALVVGEDR----LNLALHRPDFV  308 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~-LVa~~avSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFv  308 (344)
                      +.+++.+... ...+.. ++.=|.+.+ |.+.|- +.+.    .|+++|+++++|=+|.-.|..-    .+.-...||++
T Consensus       202 ~~l~~~i~~~-~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv  280 (459)
T PRK05965        202 AALRAKVAEL-GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLM  280 (459)
T ss_pred             HHHHHHHHhc-CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeE
Confidence            4566666531 112333 344454444 777654 5554    2578999999999998214331    11123569999


Q ss_pred             EEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          309 LCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       309 v~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      +++  |.|-||  |  +|++++++++.+.
T Consensus       281 ~~g--Kgl~gG~~P--i~av~~~~~i~~~  305 (459)
T PRK05965        281 TVA--KGLTSGYVP--MGAVLMSDHVYQG  305 (459)
T ss_pred             Eec--hhhccCCcc--eeEEEEcHHHHHH
Confidence            985  652332  5  8999999887543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=91.98  E-value=4.9  Score=41.44  Aligned_cols=173  Identities=14%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEcC-CcC--HHHHHHHH-----HcCCc----
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTII-GEE--LDYVREFA-----SFKES----  223 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~~-eH~--~~~ir~la-----~~~G~----  223 (344)
                      ...+.-+++++.+....+  .|.|+.++|||+...+.- ..+.....|++.. .+|  ......+.     .+.+.    
T Consensus        97 ~~~~lae~L~~~~p~~~~--~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~  174 (457)
T PRK05639         97 RAIRVAEKLAEISPIENP--KVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLM  174 (457)
T ss_pred             HHHHHHHHHHhhCCCCcC--EEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCC
Confidence            334455566666653222  799999999987754431 1122233455432 344  22111111     11111    


Q ss_pred             -EEEEEeCCCCCC-c------cCH--------HHHHHHhhhc-CCCCCeeEEEE-eCccc-cccccH-HHHH----HHHh
Q 035915          224 -KVILAPEAWLDL-R------IKG--------SQLSQYFRRK-CKHTPKGLFSY-PADIN-GTRYSM-HWIS----EAHR  279 (344)
Q Consensus       224 -kV~~vp~~~~~g-~------i~~--------~~L~~~l~~~-~~~~~t~LVa~-~avSN-G~i~Pl-~~Ia----~ar~  279 (344)
                       .+.++|...... .      -+.        +.|++.+... ....+..-|.+ +.+.+ |.+.|- +.+.    .|++
T Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~  254 (457)
T PRK05639        175 PNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE  254 (457)
T ss_pred             CCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence             244555432100 0      011        2244433210 01123444444 44444 877663 4443    3578


Q ss_pred             CCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          280 NSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       280 ~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+++++|=+|.-.|..-    .+.-...||++++  =|. +|+=.++|+++.+++..+
T Consensus       255 ~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~-l~gG~pi~av~~~~~i~~  310 (457)
T PRK05639        255 HGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIF--GKG-VASGMGLSGVIGRKELMD  310 (457)
T ss_pred             cCCEEEEechhhccCcCchHHHHHhcCCCCCEEEe--chh-hcCCCcceeEEehHHHHh
Confidence            999999999997214221    1112357999995  687 542234899999888765

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=91.63  E-value=7.1  Score=39.75  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=38.0

Q ss_pred             CeeEEEEe-Cccc-cccccH----HHHH-HHHhCCcEEEeccccc-CcCCc----cCCCCCCCCcEEEEccc
Q 035915          254 PKGLFSYP-ADIN-GTRYSM----HWIS-EAHRNSWHVLLDATAL-VVGED----RLNLALHRPDFVLCNLD  313 (344)
Q Consensus       254 ~t~LVa~~-avSN-G~i~Pl----~~Ia-~ar~~g~~vlvDAaQa-~~G~~----~LDLs~l~~DFvv~S~H  313 (344)
                      .+..|.+. .+.+ |.+.|-    +.|. .|+++|+++++|-+|. + |..    ..+.....||+++++-.
T Consensus       218 ~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~-GrtG~~~a~~~~gv~PDi~~~gK~  288 (431)
T TIGR03251       218 DIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGV-GLTGTAWAYQQLGVQPDIVAFGKK  288 (431)
T ss_pred             cEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcc-CccchHHHHHhcCCCCCEEEeccc
Confidence            35555554 4445 877532    3443 3589999999999999 5 765    12223457999987544

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=91.63  E-value=7.7  Score=40.33  Aligned_cols=210  Identities=10%  Similarity=0.016  Sum_probs=105.4

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-  200 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-  200 (344)
                      .|=+-|.  .+++..+.+....+-++.+.-.   +...+.=+++.+++-.+ ....+.|+.++|||+..++.--..-.| 
T Consensus        70 ~GH~hP~--Vv~Av~~q~~~~~h~~~~~~~~---e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr  143 (447)
T COG0160          70 LGHNHPR--VVEAVKRQLAKLNHTHTRDLYY---EPYVELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGR  143 (447)
T ss_pred             cCCCCHH--HHHHHHHHHHHhhcccCCcccc---hhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCC
Confidence            5655465  4555444455443233322211   23333334445554442 223699999999998875542111123 


Q ss_pred             CeEEE-cCCcC--HHHHHHH----H-HcCC-----cEEEEEeCCCCC-C----------ccCHHHHHHHhhh-cCCCCC-
Q 035915          201 NFYMT-IIGEE--LDYVREF----A-SFKE-----SKVILAPEAWLD-L----------RIKGSQLSQYFRR-KCKHTP-  254 (344)
Q Consensus       201 d~ivS-~~eH~--~~~ir~l----a-~~~G-----~kV~~vp~~~~~-g----------~i~~~~L~~~l~~-~~~~~~-  254 (344)
                      ..+++ .-.+|  ....-.+    . .++|     ..|..+|....- .          .-..+.+++++.. .....+ 
T Consensus       144 ~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~v  223 (447)
T COG0160         144 PGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEV  223 (447)
T ss_pred             CcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCce
Confidence            33443 22334  1111111    0 1111     235556643210 0          1122334553322 111112 


Q ss_pred             eeEEEEeCccc-cccccH-HHHHH----HHhCCcEEEecccccCcCCcc--CCCC--CCCCcEEEEccccCCCCCCCceE
Q 035915          255 KGLFSYPADIN-GTRYSM-HWISE----AHRNSWHVLLDATALVVGEDR--LNLA--LHRPDFVLCNLDNTQNAQPSKIT  324 (344)
Q Consensus       255 t~LVa~~avSN-G~i~Pl-~~Ia~----ar~~g~~vlvDAaQa~~G~~~--LDLs--~l~~DFvv~S~HK~l~G~P~GiG  324 (344)
                      ..+|+=+.++. |.+.|- .++..    |+++|+++++|=+|+=+|..-  +-++  ...||.+|++  |- +|+=--+|
T Consensus       224 AaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a--K~-ig~G~Pl~  300 (447)
T COG0160         224 AAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA--KS-LGGGLPLS  300 (447)
T ss_pred             eEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEec--cc-ccCCCcee
Confidence            34555566664 877665 66653    478999999999998434321  2222  3469999986  66 55422288


Q ss_pred             EEEEeCCCccccccccc
Q 035915          325 CLLIRKKSFDTSTSSAH  341 (344)
Q Consensus       325 ~L~Vr~~~~~~~~~~~~  341 (344)
                      +++.|++..+ .....|
T Consensus       301 avv~r~ei~~-~~~g~~  316 (447)
T COG0160         301 AVVGRAEIMD-WPPGGH  316 (447)
T ss_pred             EEeccHHhcc-cCCccc
Confidence            9999988776 344444

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=91.44  E-value=1.9  Score=43.53  Aligned_cols=92  Identities=10%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             HHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHH-HHHhCCcEEEecccccCcCCcc----CCCCCCCCcEE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWIS-EAHRNSWHVLLDATALVVGEDR----LNLALHRPDFV  308 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFv  308 (344)
                      +.|++.+...........|.+. .+++ |.+.|    ++.|. .|+++|++++.|=++.-.|...    ++.....+|+ 
T Consensus       185 ~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi-  263 (425)
T PRK08088        185 ASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL-  263 (425)
T ss_pred             HHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE-
Confidence            4577777521111234444444 4445 77766    44443 3688999999999987213321    2223356785 


Q ss_pred             EEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          309 LCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       309 v~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                       .|+=|. ++ | -.+|+++.++++.+.
T Consensus       264 -~s~sK~-l~-~G~rig~v~~~~~~~~~  288 (425)
T PRK08088        264 -TTFAKS-IA-GGFPLAGVTGRAEVMDA  288 (425)
T ss_pred             -EEEecc-cc-CCCcceeeEecHHHHhh
Confidence             455798 66 4 137999987665443

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=91.44  E-value=11  Score=39.31  Aligned_cols=72  Identities=15%  Similarity=0.308  Sum_probs=43.2

Q ss_pred             HHHHHHHhhhcCCCCCee-EEEEeCccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc-------CCCCCCC
Q 035915          239 GSQLSQYFRRKCKHTPKG-LFSYPADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR-------LNLALHR  304 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~-LVa~~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~-------LDLs~l~  304 (344)
                      .+.|++++... . .... ++.=+.+.+ |.+.|    ++.+.+ |+++|+++++|=+|.-.|..-       .++. ..
T Consensus       238 l~~l~~~l~~~-~-~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~-~~  314 (464)
T TIGR00699       238 LEEVEDLIKKW-H-KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLD-DP  314 (464)
T ss_pred             HHHHHHHHHhc-C-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCC-CC
Confidence            34566677531 1 1233 333355555 88888    666654 689999999999996214311       1222 24


Q ss_pred             CcEEEEccccC
Q 035915          305 PDFVLCNLDNT  315 (344)
Q Consensus       305 ~DFvv~S~HK~  315 (344)
                      ||++++  =|.
T Consensus       315 PDi~t~--gK~  323 (464)
T TIGR00699       315 PDMVTF--SKK  323 (464)
T ss_pred             CCEEEe--hhh
Confidence            999887  476

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=91.37  E-value=10  Score=38.29  Aligned_cols=93  Identities=9%  Similarity=0.041  Sum_probs=53.9

Q ss_pred             HHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc----CCCCCCCCcEE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR----LNLALHRPDFV  308 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFv  308 (344)
                      +.+++.+...........|.+- .+.+ |.+.|    ++.|.+ |+++|+++++|=+|.-.|..-    ++-....||.+
T Consensus       183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~  262 (420)
T TIGR00700       183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI  262 (420)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE
Confidence            3455555311111244555543 3444 88887    455544 689999999999987324321    11123468977


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCccc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +  +=|. +++=--+|++++++++.+.
T Consensus       263 ~--lsK~-l~~G~pig~v~~~~~i~~~  286 (420)
T TIGR00700       263 T--TAKS-LADGLPLSGVTGRAEIMDA  286 (420)
T ss_pred             E--eecc-ccCCcceEEEEecHHHHhh
Confidence            6  5687 5521238999998876554

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=91.13  E-value=2.2  Score=42.40  Aligned_cols=165  Identities=16%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             cccchHHHHHHhhccCCC--Ch-hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-
Q 035915          131 RTQLEPSRLLDILTKKSS--FP-GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-  206 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss--~~-g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-  206 (344)
                      .+.+.++.|.+.=.|-++  +- |.+.  .-.+...+||+|=+-. |   .+.-+++-+|+..+.+.+ +.+.+.+.|+ 
T Consensus        86 ii~a~~~aleeyGaGlssvrfIcGtq~--iHk~LE~kiAqfh~rE-D---~ilypscfdANag~feai-l~pedAvfSDe  158 (417)
T KOG1359|consen   86 IINAGQKALEEYGAGLSSVRFICGTQD--IHKLLESKIAQFHGRE-D---TILYPSCFDANAGAFEAI-LTPEDAVFSDE  158 (417)
T ss_pred             HHHHHHHHHHHhCCCccceeEEecchH--HHHHHHHHHHHHhCCC-c---eEEeccccccchHHHHHh-cChhhhhhccc
Confidence            566667777765444432  21 2221  2244556788887653 2   344444445555555554 3455555554 


Q ss_pred             CCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc--ccccccHHHHHH-HHhCC
Q 035915          207 IGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI--NGTRYSMHWISE-AHRNS  281 (344)
Q Consensus       207 ~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS--NG~i~Pl~~Ia~-ar~~g  281 (344)
                      +.|.  .+.+| +|++.+             .++.-+|+..+...+|. +.+||+-..+=  .|-+-|+++|.. ++++|
T Consensus       159 LNhASIIdGir-Lckry~-------------h~dv~~l~~~l~~a~k~-r~klv~TDg~FSMDGdiaPl~ei~~La~kYg  223 (417)
T KOG1359|consen  159 LNHASIIDGIR-LCKRYR-------------HVDVFDLEHCLISACKM-RLKLVVTDGVFSMDGDIAPLEEISQLAKKYG  223 (417)
T ss_pred             cccchhhhhhH-HHhhhc-------------cchhHHHHHHHHHhhhh-eEEEEEecceeccCCCcccHHHHHHHHHhcC
Confidence            3333  33443 454322             22333444333333332 45677766553  399999988865 58899


Q ss_pred             cEEEecccccCcCCcc---------CCCCCCCCcEEEEccccCCCCCC
Q 035915          282 WHVLLDATALVVGEDR---------LNLALHRPDFVLCNLDNTQNAQP  320 (344)
Q Consensus       282 ~~vlvDAaQa~~G~~~---------LDLs~l~~DFvv~S~HK~l~G~P  320 (344)
                      +++++|-+|+- |-.-         +++. -++|.+...+-|. +|+-
T Consensus       224 aLlfiDecHaT-gf~G~tGrGt~E~~~vm-~~vdiinsTLgKA-lGga  268 (417)
T KOG1359|consen  224 ALLFIDECHAT-GFFGETGRGTAEEFGVM-GDVDIINSTLGKA-LGGA  268 (417)
T ss_pred             cEEEEeecccc-eeecCCCCChHHHhCCC-Ccceehhhhhhhh-hcCC
Confidence            99999999986 4322         2221 3699999999998 6643

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=90.96  E-value=0.43  Score=42.27  Aligned_cols=43  Identities=12%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHc----C----CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE
Q 035915          159 IQARNKVLKHC----G----LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM  204 (344)
Q Consensus       159 e~AR~~IA~~L----g----a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv  204 (344)
                      .+.|+.||+++    |    ++++  +|++|+|+|+|+.+++.++ ..+||.|+
T Consensus        95 ~~lR~AiA~~l~~~~g~~v~~~pd--~Ivvt~Ga~~al~~l~~~l-~dpGD~Vl  145 (153)
T PLN02994         95 ANFRKAIANFMAEARGGRVKFDAD--MIVLSAGATAANEIIMFCI-ADPGDAFL  145 (153)
T ss_pred             HHHHHHHHHHHHHHhCCCCccchh--heEEcCCHHHHHHHHHHHH-cCCCCEEE
Confidence            34556666555    4    3455  7999999999999999988 46899865

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=90.93  E-value=3.9  Score=41.81  Aligned_cols=90  Identities=11%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeC-cc-c-ccccc----HHHHHH-HHhCCcEEEecccccCcCCc----cCCCCCCCCc
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPA-DI-N-GTRYS----MHWISE-AHRNSWHVLLDATALVVGED----RLNLALHRPD  306 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~a-vS-N-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~----~LDLs~l~~D  306 (344)
                      .+++++.+...  ..+...|.+-- .+ + |.+.|    ++.+.+ |+++|+++++|=+|.-.|..    -.+.....||
T Consensus       191 ~~~l~~~l~~~--~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PD  268 (428)
T PRK07986        191 IAPFARLMAAH--RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPD  268 (428)
T ss_pred             HHHHHHHHHhC--CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCC
Confidence            35666667531  12355555533 23 4 66543    344433 58899999999999411321    1122345799


Q ss_pred             EEEEccccCCCCC--CCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQ--PSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~--P~GiG~L~Vr~~~~~  334 (344)
                      ++++  =|.|-||  |  +|++++++++.+
T Consensus       269 i~t~--gK~l~gG~~p--~~av~~~~~i~~  294 (428)
T PRK07986        269 ILCL--GKALTGGTMT--LSATLTTREVAE  294 (428)
T ss_pred             EEEe--chhhhCCccc--CcchhchHHHHH
Confidence            9975  5763333  4  577777776554

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=90.51  E-value=3.8  Score=40.88  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             CeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccCCCCC----CCCc-EEEEccccCCCCCCC-
Q 035915          254 PKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLNLAL----HRPD-FVLCNLDNTQNAQPS-  321 (344)
Q Consensus       254 ~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDLs~----l~~D-Fvv~S~HK~l~G~P~-  321 (344)
                      +++.++++--.|  |.++-=+++.    .++++|+.+++|-|=.+ +--.+.+++    |+.. .+|+|+-|  .|-|. 
T Consensus       179 ~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~-PFP~iifsd~~~~w~~NiilC~SLSK--~GLPG~  255 (417)
T COG3977         179 STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV-PFPGIIFSDATPLWNENIILCMSLSK--LGLPGS  255 (417)
T ss_pred             ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC-CCCceecccccccCCCCEEEEeehhh--cCCCCc
Confidence            588999986665  8776655553    24889999999999888 555555554    3333 67899999  47784 


Q ss_pred             ceEEEEEeCCCccc
Q 035915          322 KITCLLIRKKSFDT  335 (344)
Q Consensus       322 GiG~L~Vr~~~~~~  335 (344)
                      .+|+.+.++++...
T Consensus       256 R~GIiIane~viqa  269 (417)
T COG3977         256 RCGIIIANEKVIQA  269 (417)
T ss_pred             ceeEEEccHHHHHH
Confidence            47888877766543

>PRK06917 hypothetical protein; Provisional

Probab=89.87  E-value=11  Score=38.70  Aligned_cols=89  Identities=10%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             HHHHHHhhhcCCCCCee-EEEEeCccc--ccccc-HHHHH----HHHhCCcEEEecccccCcCCccC----CCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKG-LFSYPADIN--GTRYS-MHWIS----EAHRNSWHVLLDATALVVGEDRL----NLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~-LVa~~avSN--G~i~P-l~~Ia----~ar~~g~~vlvDAaQa~~G~~~L----DLs~l~~DF  307 (344)
                      +.+++.+.... ..... ++.=|.+.+  |.+.| -+.+.    .|+++|+++++|=+|.-.|..--    +.-...||+
T Consensus       186 ~~le~~i~~~~-~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi  264 (447)
T PRK06917        186 TELETAIERIG-AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI  264 (447)
T ss_pred             HHHHHHHHhcC-CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence            45566665311 11343 333454543  56665 35443    35789999999999872132211    112356999


Q ss_pred             EEEccccCCCCC---CCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      +++  =|. +|+   |  +|++.++++..+
T Consensus       265 ~~~--gK~-l~~G~~P--i~a~~~~~~i~~  289 (447)
T PRK06917        265 MTL--GKG-LGAGYTP--IAATVVSDRVME  289 (447)
T ss_pred             EEe--eeh-hccCCcc--eEEEEEcHHHHH
Confidence            877  477 442   5  788988876654

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=89.52  E-value=6.3  Score=40.59  Aligned_cols=90  Identities=18%  Similarity=0.296  Sum_probs=54.2

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-eC-ccc-cccccH-HHHH---H-HHhCCcEEEecccccCcCCccC----CCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-PA-DIN-GTRYSM-HWIS---E-AHRNSWHVLLDATALVVGEDRL----NLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~a-vSN-G~i~Pl-~~Ia---~-ar~~g~~vlvDAaQa~~G~~~L----DLs~l~~DF  307 (344)
                      +.+++.+...  ..+..-|.+ |. +.+ |.+.|- +.+.   + |+++|+++++|=+|.-.|..--    +.-...||+
T Consensus       209 ~~l~~~l~~~--~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDi  286 (453)
T PRK06943        209 ADVRRLFAER--AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDF  286 (453)
T ss_pred             HHHHHHHHhC--CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCe
Confidence            4566666531  123444444 42 444 776553 4443   3 5789999999999972153321    122357999


Q ss_pred             EEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      ++++  |.|-||  |  +|++++++++.+.
T Consensus       287 vt~g--Kgl~gG~~P--i~av~~~~ei~~~  312 (453)
T PRK06943        287 LCLS--KGISGGYLP--LSLVLSRDAIFAA  312 (453)
T ss_pred             Eeee--hhhccCccc--ceEEEEcHHHHHh
Confidence            9994  652333  5  8999999876543

>PRK06149 hypothetical protein; Provisional

Probab=89.20  E-value=22  Score=40.22  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=49.7

Q ss_pred             eeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc--C-CC--CCCCCcEEEEccccCCCCCCC
Q 035915          255 KGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR--L-NL--ALHRPDFVLCNLDNTQNAQPS  321 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~--L-DL--s~l~~DFvv~S~HK~l~G~P~  321 (344)
                      ...|.+ +.+++ |.+.|    ++.+.+ |+++|+++++|=+|. + |..-  + -.  ....||.+++  =|. +|+=-
T Consensus       745 iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGf-GRtG~~~~a~e~~gv~PDivt~--gK~-lg~G~  820 (972)
T PRK06149        745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGY-GRLGHYFWGFEQQGVVPDIITM--AKG-MGNGH  820 (972)
T ss_pred             eEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcC-CccCccchhhhhcCCCCCEEEe--ccc-ccCCe
Confidence            444444 45555 88888    766654 689999999999993 4 4432  1 11  2356999976  577 44312


Q ss_pred             ceEEEEEeCCCcc
Q 035915          322 KITCLLIRKKSFD  334 (344)
Q Consensus       322 GiG~L~Vr~~~~~  334 (344)
                      -+|++++++++.+
T Consensus       821 Pl~av~~~~~i~~  833 (972)
T PRK06149        821 PLGAVITRREIAE  833 (972)
T ss_pred             eeEEEEEcHHHHh
Confidence            2899999987654

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=89.08  E-value=4.7  Score=41.05  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=44.9

Q ss_pred             EEEEeC-ccc-cccccH-HHHH----HHHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCC-CC-CCce
Q 035915          257 LFSYPA-DIN-GTRYSM-HWIS----EAHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQN-AQ-PSKI  323 (344)
Q Consensus       257 LVa~~a-vSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~-G~-P~Gi  323 (344)
                      ++.=|. +.+ |.+.|- +.+.    .|+++|+++++|=+|.-.|..-    .......||++++  =|. + || + -+
T Consensus       204 vi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~-l~gG~~-p~  279 (422)
T PRK05630        204 IIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKA-LTGGFM-SF  279 (422)
T ss_pred             EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--ech-hhcCcc-cc
Confidence            344443 444 776553 4443    3578999999999995213211    1222457999966  588 5 32 3 26


Q ss_pred             EEEEEeCCCcc
Q 035915          324 TCLLIRKKSFD  334 (344)
Q Consensus       324 G~L~Vr~~~~~  334 (344)
                      |++++++++.+
T Consensus       280 ~av~~~~~i~~  290 (422)
T PRK05630        280 AATLCTDKVAQ  290 (422)
T ss_pred             ceeeccHHHHH
Confidence            88888877654

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=88.78  E-value=3.4  Score=42.07  Aligned_cols=193  Identities=12%  Similarity=0.057  Sum_probs=112.9

Q ss_pred             cCCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHH-HcCCCC---CCCeEE--EeCCHHHHHHHHHhhC
Q 035915          122 FGSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLK-HCGLPD---DEYLVL--FTPNYRDAMMLVGESY  195 (344)
Q Consensus       122 ~Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~-~Lga~p---~ey~VV--FTsnaTeAlnlva~sl  195 (344)
                      -|.+ |-...|+.++++|.+.- .+.+|.+-.-.   ..-++.+++ +||.+.   ++..|+  =|.|+|.||.+.++-+
T Consensus        40 ~Gk~-pvl~aV~~Ae~~l~~~~-~~k~Yl~i~G~---~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl  114 (396)
T COG1448          40 DGKT-PVLRAVKKAEKRLLEQE-KTKNYLPIEGL---PEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFL  114 (396)
T ss_pred             CCCc-chhHHHHHHHHHhhccc-cccccCCcCCc---HHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHH
Confidence            4555 66667888888888754 33334332211   122233333 456441   112344  4579999999988765


Q ss_pred             CC-CCCC-eEEE--cCCcCHHHHHHHHHcCCcEEEEEeC-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c--cc
Q 035915          196 PF-FRGN-FYMT--IIGEELDYVREFASFKESKVILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N--GT  267 (344)
Q Consensus       196 ~~-~~Gd-~ivS--~~eH~~~~ir~la~~~G~kV~~vp~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N--G~  267 (344)
                      .. .+.. .+++  .+++|.+.+    ...|.+|..=|. +..+..++.+.+...|..-   +...+|.+...+ |  |.
T Consensus       115 ~~~~~~~~vwis~PtW~NH~~If----~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a---~~~~vvLLH~CcHNPTG~  187 (396)
T COG1448         115 ARFFPDATVWISDPTWPNHKAIF----EAAGLEVETYPYYDAETKGLDFDGMLADLKTA---PEGSVVLLHGCCHNPTGI  187 (396)
T ss_pred             HHhCCCceEEeCCCCcHhHHHHH----HhcCCceeeeeccccccccccHHHHHHHHHhC---CCCCEEEEecCCCCCCCC
Confidence            32 2222 3454  333333222    346999976553 3333447777777666532   234577777666 6  99


Q ss_pred             cccH-HHHHH---HHhCCcEEEeccc-ccCcCCccCCCC---------CCCCcEEEEccccCCCCC-CCceEEEEEe
Q 035915          268 RYSM-HWISE---AHRNSWHVLLDAT-ALVVGEDRLNLA---------LHRPDFVLCNLDNTQNAQ-PSKITCLLIR  329 (344)
Q Consensus       268 i~Pl-~~Ia~---ar~~g~~vlvDAa-Qa~~G~~~LDLs---------~l~~DFvv~S~HK~l~G~-P~GiG~L~Vr  329 (344)
                      .+.. +|...   +++++++.++|-| |.. |.. ++-+         ....=|++.|+-|. ||- =..+|++.+-
T Consensus       188 D~t~~qW~~l~~~~~~r~lip~~D~AYQGF-~~G-leeDa~~lR~~a~~~~~~lva~S~SKn-fgLYgERVGa~~vv  261 (396)
T COG1448         188 DPTEEQWQELADLIKERGLIPFFDIAYQGF-ADG-LEEDAYALRLFAEVGPELLVASSFSKN-FGLYGERVGALSVV  261 (396)
T ss_pred             CCCHHHHHHHHHHHHHcCCeeeeehhhhhh-ccc-hHHHHHHHHHHHHhCCcEEEEehhhhh-hhhhhhccceeEEE
Confidence            8888 56653   3899999999965 666 654 4432         12236888899998 441 2358888764

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=88.58  E-value=5.2  Score=41.25  Aligned_cols=89  Identities=13%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-e-Cccc-cccc-cHHHHHH----HHhCCcEEEecccccCcCCcc----CCCCCCCCcE
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-P-ADIN-GTRY-SMHWISE----AHRNSWHVLLDATALVVGEDR----LNLALHRPDF  307 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~-avSN-G~i~-Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DF  307 (344)
                      +.+++.+...  ..+..-|.+ | .+.+ |.+. |-+.+..    |+++|+++++|=+|.-.|..-    .+.-...||+
T Consensus       211 ~~l~~~l~~~--~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDi  288 (460)
T PRK06916        211 EELEELLKEK--HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDI  288 (460)
T ss_pred             HHHHHHHHhC--CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCe
Confidence            4456666521  123444444 4 2444 7765 4455542    578999999999986214321    1112357999


Q ss_pred             EEEccccCCCCC--CCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQ--PSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~--P~GiG~L~Vr~~~~~  334 (344)
                      +++  =|.|-||  |  +|++++++++.+
T Consensus       289 v~~--gK~l~gG~~P--i~av~~~~ei~~  313 (460)
T PRK06916        289 MTA--GKGLTGGYLP--IAITVTTDEIYN  313 (460)
T ss_pred             eee--ehhhhcCccc--cceeeecHHHHH
Confidence            987  4652333  5  899999887654

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=88.52  E-value=14  Score=37.33  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHH-HHHhCCcEEEecccccCcCCccCCC----CCCCCc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWIS-EAHRNSWHVLLDATALVVGEDRLNL----ALHRPD  306 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDL----s~l~~D  306 (344)
                      +.+.+++.+.++    ....|.+ |.+.+ |.+.|    +..+. .|+++|+++++|=+|.-.|...--+    ....||
T Consensus       175 d~~~l~~~~~~~----~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pd  250 (408)
T PRK04612        175 DVEALEAAMAGG----DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPD  250 (408)
T ss_pred             CHHHHHHhhCCC----CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCC
Confidence            456777777531    3444444 44445 55553    33443 3589999999999997324422101    123567


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++  =|. +|+=--+|+++.+++..+
T Consensus       251 i~t~--~K~-l~~G~piga~~~~~~~~~  275 (408)
T PRK04612        251 IVTL--AKA-LGGGFPIGAMLAGPKVAE  275 (408)
T ss_pred             EEEE--cch-hcCCCceEEEEECHHHHh
Confidence            7766  587 552012888888876543

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=87.42  E-value=24  Score=36.12  Aligned_cols=78  Identities=12%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             eeEEEE-eCccc-cccccH-HHHH----HHHhCCcEEEecccccCcCCcc--CCCCCC--CCcEEEEccccCCCCCCCce
Q 035915          255 KGLFSY-PADIN-GTRYSM-HWIS----EAHRNSWHVLLDATALVVGEDR--LNLALH--RPDFVLCNLDNTQNAQPSKI  323 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa~~G~~~--LDLs~l--~~DFvv~S~HK~l~G~P~Gi  323 (344)
                      ...|.+ |.+.+ |.++|- +.+.    .|+++|++++.|=++.-.|...  +-+..+  .||.+  ++=|. +++=--+
T Consensus       220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~-l~~G~pi  296 (451)
T PRK06918        220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKS-LGAGVPI  296 (451)
T ss_pred             eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehh-hcCCCcc
Confidence            433333 44445 876664 3233    3588999999999987314322  222223  48966  45687 5521238


Q ss_pred             EEEEEeCCCccc
Q 035915          324 TCLLIRKKSFDT  335 (344)
Q Consensus       324 G~L~Vr~~~~~~  335 (344)
                      |++++++++.+.
T Consensus       297 g~v~~~~~i~~~  308 (451)
T PRK06918        297 SGVIGRKEIMDE  308 (451)
T ss_pred             EEEEEcHHHHhc
Confidence            999998766543

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=87.36  E-value=7.6  Score=39.71  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhcCCCCCeeEEEE-eC-ccc-cccc-cHHHHHH----HHhCCcEEEecccccCcCCcc------CCCCCCC
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSY-PA-DIN-GTRY-SMHWISE----AHRNSWHVLLDATALVVGEDR------LNLALHR  304 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~-~a-vSN-G~i~-Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~------LDLs~l~  304 (344)
                      .+.|++.+...  ..+..-|.+ +. +.+ |.+. |-+.+.+    |+++|+++++|=+| . |..+      .+.....
T Consensus       193 l~~l~~~i~~~--~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-t-G~GrtG~~~a~~~~gv~  268 (429)
T PRK06173        193 IEPLQDLLEQK--GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-T-GFGRTGKLFALEHAGVV  268 (429)
T ss_pred             HHHHHHHHHhC--CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-c-CCCcCCcchHHHhcCCC
Confidence            44466666521  123444444 43 444 7764 4455542    57899999999999 4 4322      1222356


Q ss_pred             CcEEEEccccCCCCC-CCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQ-PSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~-P~GiG~L~Vr~~~~~  334 (344)
                      ||++++  =|.|-|| . -+++++++++..+
T Consensus       269 PDiv~~--gK~l~gG~~-p~~a~~~~~~i~~  296 (429)
T PRK06173        269 PDIMCI--GKALTGGYL-TLSATITTEAIAQ  296 (429)
T ss_pred             CCEEEe--ehhhhCCcc-ccceEEecHHHHH
Confidence            999985  6773333 1 2678888776543

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=85.54  E-value=12  Score=38.83  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             HHHHHHhhhcCCCCCeeEEEE-e-Cccc-cccccH-HHHH----HHHhCCcEEEeccccc-CcCCcc----CCCCCCCCc
Q 035915          240 SQLSQYFRRKCKHTPKGLFSY-P-ADIN-GTRYSM-HWIS----EAHRNSWHVLLDATAL-VVGEDR----LNLALHRPD  306 (344)
Q Consensus       240 ~~L~~~l~~~~~~~~t~LVa~-~-avSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~D  306 (344)
                      +.+++.+...  .....-|.+ | .+.+ |.+.|- +.+.    .|+++|+++++|=+|. + |..-    .+.-...||
T Consensus       224 ~~l~~~~~~~--~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGf-GRtG~~~a~e~~gv~PD  300 (472)
T PRK08742        224 DALQALFEQS--PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGF-GRTGTLFACEQAGVMPD  300 (472)
T ss_pred             HHHHHHHHhC--CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchHHHhcCCCCC
Confidence            4556666421  123444444 4 2444 776654 4443    3578999999999998 4 5422    122245799


Q ss_pred             EEEEccccCCCCC--CCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQ--PSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~--P~GiG~L~Vr~~~~~  334 (344)
                      +++++  |.|-||  |  +|++++++++.+
T Consensus       301 iv~~g--Kgl~gG~~P--laav~~~~ei~~  326 (472)
T PRK08742        301 LLCLS--KGLTGGFLP--LSAVLATQQLYD  326 (472)
T ss_pred             EEEEc--ccccCCCCC--cceeeccHHHHH
Confidence            99994  762232  5  899999887644

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=85.41  E-value=37  Score=34.40  Aligned_cols=93  Identities=11%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             HHHHHHHhhhcCCCCCeeEEEE-eCccc-cc-cccHHH---HH-HHHhCCcEEEecccccCcCCcc--CCC--CCCCCcE
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSY-PADIN-GT-RYSMHW---IS-EAHRNSWHVLLDATALVVGEDR--LNL--ALHRPDF  307 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~-i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~~~--LDL--s~l~~DF  307 (344)
                      .+.+++.+.......+...|.+ +.+++ |. ..|-+.   +. .|+++|+++++|=+|.-.|..-  +-.  -...+|+
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDi  262 (421)
T PRK06777        183 LSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL  262 (421)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCE
Confidence            4456666642111123444444 44444 75 456443   33 3588999999999987214321  111  1346897


Q ss_pred             EEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                      ++  +=|. ++ + --+|+++.++++.+.
T Consensus       263 v~--~sK~-l~-~G~pigav~~~~~i~~~  287 (421)
T PRK06777        263 IT--MAKS-LG-GGMPISAVVGRAEVMDA  287 (421)
T ss_pred             Ee--eehh-hc-CCCceEEEEEcHHHHhc
Confidence            75  5687 65 3 128999988766543

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=85.18  E-value=7.6  Score=39.65  Aligned_cols=185  Identities=12%  Similarity=0.050  Sum_probs=104.0

Q ss_pred             HHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC----CCCCCeEEEcCCcCH
Q 035915          136 PSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP----FFRGNFYMTIIGEEL  211 (344)
Q Consensus       136 ~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~----~~~Gd~ivS~~eH~~  211 (344)
                      .+.|..++.|.-.|.|+..--.+.+   .+-+.||.   + -++=|.-+..|=|++..-+-    ..+|+..+.....|-
T Consensus        62 ~~qwaamm~GDEAYagsrs~~~L~~---avkdifGf---q-~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~F  134 (471)
T COG3033          62 DKQWAAMMRGDEAYAGSRSYYALAD---AVKDIFGF---Q-YTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHF  134 (471)
T ss_pred             HHHHHHHhccchhhcccccHHHHHH---HHHHhcCc---e-eeeeccCCccHHHHHHHHHhhhccccCCcccccccccee
Confidence            4567778888877777766444433   35556675   2 46778777767665544321    124533222212222


Q ss_pred             HHHHHHHHcCCcEEEEEeCCC---------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHH---HH
Q 035915          212 DYVREFASFKESKVILAPEAW---------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWI---SE  276 (344)
Q Consensus       212 ~~ir~la~~~G~kV~~vp~~~---------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~I---a~  276 (344)
                      ++-+.-.+..|+..+-++.+.         -.|.+|.+.|++++.... ....-.++++..+|   |.-..++-+   .+
T Consensus       135 dTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG-~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~  213 (471)
T COG3033         135 DTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVG-ADNVPYIVLTITNNSAGGQPVSMANMKAVYE  213 (471)
T ss_pred             cchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhC-cccCcEEEEEEeccccCCCcchHHhHHHHHH
Confidence            222333344565554443321         136789999999987531 12344555555555   665555444   33


Q ss_pred             -HHhCCcEEEecccccCcCCc------cCCCCC-----------CCCcEEEEccccCCCCCCCce-EEEEEeCCC
Q 035915          277 -AHRNSWHVLLDATALVVGED------RLNLAL-----------HRPDFVLCNLDNTQNAQPSKI-TCLLIRKKS  332 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa~~G~~------~LDLs~-----------l~~DFvv~S~HK~l~G~P~Gi-G~L~Vr~~~  332 (344)
                       ++++++.|+.|++-.+ -..      .-.-.+           ..+|-.+.|+-|=  | -..+ |+|..+++.
T Consensus       214 ia~ky~ipvv~Da~Rfa-ENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD--~-lvnmGGfl~~~D~~  284 (471)
T COG3033         214 IAKKYDIPVVMDAARFA-ENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD--G-LVNMGGFLCFKDDS  284 (471)
T ss_pred             HHHHcCCcEEeehhhhh-hhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc--c-eeccccEEEecCcc
Confidence             5889999999998765 211      111111           2489999999995  3 2234 455667664

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=84.94  E-value=18  Score=37.25  Aligned_cols=169  Identities=14%  Similarity=0.086  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCC--C-C--CC-eEEEcC-CcC--HHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPF--F-R--GN-FYMTII-GEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~--~-~--Gd-~ivS~~-eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ..++-+.+.+.++-...+ .|.|..++|||+..++.. +.+  . .  +. .++... .+|  ....-..+...+.   -
T Consensus       100 av~l~~~l~~~~~~~~~~-rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y---~  175 (433)
T KOG1401|consen  100 AVELEEVLSAVLGKGSAE-RVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKY---G  175 (433)
T ss_pred             HHHHHHHHHhcccCCCcc-EEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhccccc---C
Confidence            555666777777433223 799999999998876652 211  1 1  11 244221 233  2211111111111   1


Q ss_pred             EeCCCC--C---C-ccCHHHHHHHhhhcCCCCCe-eEEEEeCccccccccH--HHH----HHHHhCCcEEEecccccCcC
Q 035915          228 APEAWL--D---L-RIKGSQLSQYFRRKCKHTPK-GLFSYPADINGTRYSM--HWI----SEAHRNSWHVLLDATALVVG  294 (344)
Q Consensus       228 vp~~~~--~---g-~i~~~~L~~~l~~~~~~~~t-~LVa~~avSNG~i~Pl--~~I----a~ar~~g~~vlvDAaQa~~G  294 (344)
                      +|.+..  +   . -=+..+|+++++...  ... .++.=|.+-+|-+.|.  +-+    .+|+++|++++.|=+|.  |
T Consensus       176 ~~~~p~~p~v~~~~ynd~t~l~k~~~~h~--~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t--G  251 (433)
T KOG1401|consen  176 LPFDPIAPDVVTAEYNDSTALEKLFESHK--GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT--G  251 (433)
T ss_pred             CCCCCCCCceeecccCCHHHHHHHHHhCC--CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh--C
Confidence            121100  0   0 014678888887642  122 3444455545666666  322    24688999999999987  2


Q ss_pred             CccCCCC------CCCCcEEEEccccCCCCCCCceEEEEEeCCCccccc
Q 035915          295 EDRLNLA------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDTST  337 (344)
Q Consensus       295 ~~~LDLs------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~~~  337 (344)
                      -.++-.-      ...||.+++.  |. +|+=--+|+..+++++.+.-+
T Consensus       252 ~gR~g~~~a~e~~~~~PDI~t~a--K~-L~gGlPigA~~v~~kV~~~i~  297 (433)
T KOG1401|consen  252 LGRLGYGWAQEYFGVTPDITTVA--KP-LGGGLPIGATGVRDKVAEMIS  297 (433)
T ss_pred             ccccchHHHHHHhCcCCcceeeh--hh-ccCCceeEEEeehHHHHhhcC
Confidence            2232211      1468988764  76 333244999999998887633

>PRK06148 hypothetical protein; Provisional

Probab=84.81  E-value=22  Score=40.57  Aligned_cols=71  Identities=10%  Similarity=0.100  Sum_probs=47.1

Q ss_pred             eCccc-ccccc----HHHHH-HHHhCCcEEEeccccc-CcCCcc-----CCCCCCCCcEEEEccccCCCCCCCceEEEEE
Q 035915          261 PADIN-GTRYS----MHWIS-EAHRNSWHVLLDATAL-VVGEDR-----LNLALHRPDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       261 ~avSN-G~i~P----l~~Ia-~ar~~g~~vlvDAaQa-~~G~~~-----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      +.+.+ |.+.|    ++.+. .|+++|+++++|=+|. + |..-     .......||++++  =|. +|+=.-+|+++.
T Consensus       792 Pv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGf-GRtG~~~~a~e~~gv~PDivt~--gK~-lggG~Plgav~~  867 (1013)
T PRK06148        792 SIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGF-GRVGSHWWAFETQGVVPDIVTM--GKP-IGNGHPMGAVVT  867 (1013)
T ss_pred             CCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCC-CCCCCcchhhhhcCCCcceeee--ccc-ccCCcceEEEEE
Confidence            45555 88877    45554 3689999999999996 4 4321     1112457999888  476 443123899999


Q ss_pred             eCCCccc
Q 035915          329 RKKSFDT  335 (344)
Q Consensus       329 r~~~~~~  335 (344)
                      +++..+.
T Consensus       868 ~~ei~~~  874 (1013)
T PRK06148        868 TREIADS  874 (1013)
T ss_pred             cHHHHhh
Confidence            9876543

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.47  E-value=19  Score=37.12  Aligned_cols=143  Identities=13%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHH-HHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELD-YVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~-~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      -+.-++||+|+|+..   .|++..|-+. ++-++-+|- ++||.+.....  ++ +++.-.+-.-.++.+..-+      
T Consensus       142 ldlE~~iakF~G~E~---aivYs~gF~t-i~S~ipafs-KrGDIi~~de~--~nfaIq~GlqlSRS~i~~Fkhn------  208 (467)
T KOG1358|consen  142 LDLEKRIAKFMGTED---AIVYSYGFST-IESAIPAFS-KRGDIIFVDEA--VNFAIQKGLQLSRSTISYFKHN------  208 (467)
T ss_pred             cccHHHHHHhhCCcc---eeeeccccch-hhhcchhhh-ccCcEEEEehh--hhHHHHHHHhhhhheeEEecCC------
Confidence            345677999999963   4777665543 333444442 47887664433  22 2221111112345554432      


Q ss_pred             CHHHHHHHhhhc----CCCC---CeeEEE-EeCcc-c-cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------
Q 035915          238 KGSQLSQYFRRK----CKHT---PKGLFS-YPADI-N-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------  297 (344)
Q Consensus       238 ~~~~L~~~l~~~----~~~~---~t~LVa-~~avS-N-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------  297 (344)
                      +.++|+..+..+    .|++   .++-|. .-+.. | |.+.|+..|-+ ..++...+++|=+-+. |...         
T Consensus       209 dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~Sf-G~lg~~GrGvteH  287 (467)
T KOG1358|consen  209 DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSF-GVLGKTGRGVTEH  287 (467)
T ss_pred             CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEeccccc-ccccccCcccccc
Confidence            334554444221    1222   223333 33443 6 99999966654 4678899999988776 5432         


Q ss_pred             CCCCCCCCcEEEEccccC
Q 035915          298 LNLALHRPDFVLCNLDNT  315 (344)
Q Consensus       298 LDLs~l~~DFvv~S~HK~  315 (344)
                      ..+..-.+|.+++|.---
T Consensus       288 ~~v~~~~iDiv~~sm~~a  305 (467)
T KOG1358|consen  288 FGVPITDIDIVTASMETA  305 (467)
T ss_pred             CCCCccceeeeeeccccc
Confidence            122224689999998776

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=80.98  E-value=73  Score=32.97  Aligned_cols=91  Identities=11%  Similarity=0.098  Sum_probs=52.6

Q ss_pred             HHHHHHHhhhcC-CCCCeeEEEE-eCccc-ccccc-HHHHH----HHHhCCcEEEecccccCcCCcc----CCCCCCCCc
Q 035915          239 GSQLSQYFRRKC-KHTPKGLFSY-PADIN-GTRYS-MHWIS----EAHRNSWHVLLDATALVVGEDR----LNLALHRPD  306 (344)
Q Consensus       239 ~~~L~~~l~~~~-~~~~t~LVa~-~avSN-G~i~P-l~~Ia----~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~D  306 (344)
                      .+.+++.+.... ......-|.+ |.+.+ |.+.| -+.+.    .|+++|+++++|=+|.-.|..-    .+.-...||
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PD  294 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD  294 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCC
Confidence            355666665310 0012333333 44545 77765 34443    3588999999999998214221    111235699


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCC
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +++++  |. +|+=--+|+++.+++.
T Consensus       295 iv~~g--Kg-lggG~PlsAv~~~~~~  317 (464)
T PRK06938        295 VVVLS--KA-IGGSLPLAVVVYREWL  317 (464)
T ss_pred             EEEee--cc-ccCCCceEEEeehhHh
Confidence            99995  66 3321228999998774

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=80.75  E-value=13  Score=40.71  Aligned_cols=147  Identities=16%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEE--LDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      +-+-+.-|+++-|.+-..  --+---+|.|-..++-++...++.. ++...-|+  ...++.-++..|++|...+...  
T Consensus       165 llNyQTmi~dlTGL~~aN--ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~~--  240 (1001)
T KOG2040|consen  165 LLNYQTMITDLTGLPMAN--ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIKE--  240 (1001)
T ss_pred             HhhhHHhhhhccCCcccc--hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecCHHH--
Confidence            345566788888875331  2222333443333333333334444 45566677  3345554555666655443211  


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHH-HHHHhCCcEEEecccccCcCCccC-CCCCCCCcEEEEcc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWI-SEAHRNSWHVLLDATALVVGEDRL-NLALHRPDFVLCNL  312 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~I-a~ar~~g~~vlvDAaQa~~G~~~L-DLs~l~~DFvv~S~  312 (344)
                        ++      ...++   -.-.||-++.. -|.+.|.+.+ +.+|.+|.++++ |+-.+ ...-| .-.++++|..+.|.
T Consensus       241 --~~------~s~~~---v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~-atDLL-aLtiLrpPgefGaDIavGSs  306 (1001)
T KOG2040|consen  241 --AD------YSSKD---VSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVM-ATDLL-ALTILRPPGEFGADIAVGSS  306 (1001)
T ss_pred             --hh------ccccc---eeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEE-eehhh-HHHccCChhhcCceeeeccc
Confidence              00      01110   01234444421 2999999655 557999988765 44443 21111 12368999999999


Q ss_pred             ccCCCCCCCceE
Q 035915          313 DNTQNAQPSKIT  324 (344)
Q Consensus       313 HK~l~G~P~GiG  324 (344)
                      ..  ||.|.|-|
T Consensus       307 QR--FGVPlGYG  316 (1001)
T KOG2040|consen  307 QR--FGVPLGYG  316 (1001)
T ss_pred             cc--cCccccCC
Confidence            99  57776644

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=80.10  E-value=77  Score=32.71  Aligned_cols=71  Identities=14%  Similarity=0.253  Sum_probs=43.1

Q ss_pred             EEEeCccc-cccccH-HHHH----HHHhCCcEEEecccccCcCCcc----CCCCCCCCcEEEEccccCCC-CCCCceEEE
Q 035915          258 FSYPADIN-GTRYSM-HWIS----EAHRNSWHVLLDATALVVGEDR----LNLALHRPDFVLCNLDNTQN-AQPSKITCL  326 (344)
Q Consensus       258 Va~~avSN-G~i~Pl-~~Ia----~ar~~g~~vlvDAaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~-G~P~GiG~L  326 (344)
                      +.=|.+.+ |.+.|- +.+.    .|+++|+++++|=+|.-.|..-    ...-...||+++++  |.|- |+|  +|++
T Consensus       230 I~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~P--i~av  305 (459)
T PRK06931        230 ILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLP--LAVL  305 (459)
T ss_pred             EEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEec--ccccCCcc--eeee
Confidence            33355555 776653 4443    3578999999999998214221    11123579999984  6522 225  7788


Q ss_pred             EEeCCC
Q 035915          327 LIRKKS  332 (344)
Q Consensus       327 ~Vr~~~  332 (344)
                      ..+++.
T Consensus       306 ~~~~~~  311 (459)
T PRK06931        306 GIKKEF  311 (459)
T ss_pred             eeHHHH
Confidence            777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 49/298 (16%), Positives = 84/298 (28%), Gaps = 88/298 (29%)

Query: 79  GLVEGEKVDLSSLCINEESSETGPDDRRKSPR------NGFRSEPSTPSF--GSNLPDLD 130
            L   E   L    ++    +   +    +PR         R   +T       N   L 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 131 RT------QLEPSRLLDILTKKSSFPGSFISIPEI-------------------QARNKV 165
                    LEP+    +  + S FP S   IP I                   +     
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 166 L--KH-----CGLPDDEYLVLFTPNYRDAMM---LVGESYPFFRGNFYMTIIGEELD-YV 214
           L  K        +P   YL L      +  +   +V + Y   +      +I   LD Y 
Sbjct: 416 LVEKQPKESTISIP-SIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQY- 472

Query: 215 REFASF---------KESKVILAPEAWLDLRIKGSQLSQYFRRKCKHT------PKGLFS 259
             F S             ++ L    +LD R        +  +K +H          + +
Sbjct: 473 --FYSHIGHHLKNIEHPERMTLFRMVFLDFR--------FLEQKIRHDSTAWNASGSILN 522

Query: 260 YPADINGTRYSMHWISEAHRNSWHVLLDA---------TALVVGE--DRLNLALHRPD 306
               +    Y  + I + +   +  L++A           L+  +  D L +AL   D
Sbjct: 523 TLQQLK--FYKPY-ICD-NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.93
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.93
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.91
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.88
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.88
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.88
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.87
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.86
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.86
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.86
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.86
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.86
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.86
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.85
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.85
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.85
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.85
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.85
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.84
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.84
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.84
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.84
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.84
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.83
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.83
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.83
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.83
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.83
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.82
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.82
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.81
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.81
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.8
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.79
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.79
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.79
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.78
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.78
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.77
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.76
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.76
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.75
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.73
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.73
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.73
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.73
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.72
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.72
1svv_A	359	Threonine aldolase; structural genomics, structura	99.71
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.71
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.71
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.71
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.7
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.7
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.69
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.69
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.68
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.68
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.68
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.68
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.68
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.68
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.68
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.67
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.67
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.65
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.65
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.65
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.64
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.64
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.64
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.64
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.63
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.63
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.63
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.61
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.61
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.61
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.61
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.61
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.6
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.6
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.6
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.6
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.6
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.59
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.59
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.59
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.58
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.58
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.57
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.57
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.57
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.57
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.57
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.57
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.56
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.56
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.56
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.56
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.56
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.56
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.56
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.55
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.55
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.55
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.55
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.55
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.55
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.55
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.54
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.54
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.54
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.54
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.54
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.53
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.53
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.53
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.52
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.52
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.52
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.52
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.51
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.51
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.51
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.51
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.51
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.5
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.5
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.49
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.49
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.49
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.49
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.48
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.48
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.48
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.48
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.48
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.47
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.46
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.46
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.46
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.46
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.45
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.45
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.45
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.45
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.44
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.44
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.43
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.42
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.42
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.41
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.41
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.41
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.4
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.4
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.4
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.39
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.39
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.38
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.37
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.37
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.36
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.36
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.34
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.33
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.33
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.33
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.32
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.32
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.31
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.31
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.28
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.27
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.27
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.26
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.26
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.26
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.24
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.24
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.23
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.23
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.23
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.23
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.23
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.22
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.21
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.2
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.2
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.19
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.17
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.16
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.07
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	98.63
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.04
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.03
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.02
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.02
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.0
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	98.99
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	98.92
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	98.91
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	98.9
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	98.88
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	98.86
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.83
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.81
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	98.78
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	98.74
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	98.7
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	98.7
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.66
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	98.66
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.65
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.65
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	98.61
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.61
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	98.57
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	98.56
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	98.56
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	98.53
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.52
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.43
3hmu_A	472	Aminotransferase, class III; structural genomics,	98.4
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	98.37
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	98.32
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.31
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	97.77
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	96.9
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	96.51
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	96.01
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	95.18
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	91.06
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	90.75

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.93  E-value=2.4e-27  Score=233.93  Aligned_cols=167  Identities=12%  Similarity=0.036  Sum_probs=132.9

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      +..+...++++|+.|+++||++ ++++|+| |+|+|+|+|+++.++ +.+|+++ +...+|..+.|...+++.| +|.++
T Consensus        67 ~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~ai~~l-~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v  143 (386)
T 3qm2_A           67 GKEFIQVAEEAEQDFRDLLNIP-SNYKVLFCHGGGRGQFAGVPLNL-LGDKTTADYVDAGYWAASAIKEAKKYC-APQII  143 (386)
T ss_dssp             ------CCHHHHHHHHHHHTCC-TTEEEEEEESCTTHHHHHHHHHH-CTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEE
Confidence            4455667899999999999995 4458999 699999999999988 5688885 3555555455666677889 89999


Q ss_pred             eCC--CCCCc-cCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccc-ccHHHHHHHHhCCcEEEecccccCcCCccCCCCC
Q 035915          229 PEA--WLDLR-IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR-YSMHWISEAHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       229 p~~--~~~g~-i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i-~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      |.+  . .|. ++.++++.++++     +|+||++++++|  |++ +|++.|.    +|++++|||+|++ |+.|+|+++
T Consensus       144 ~~~~~~-~G~~~~~~~~~~~l~~-----~t~lV~~~h~et~tG~~i~pi~~i~----~g~~~~vDa~qs~-g~~pidv~~  212 (386)
T 3qm2_A          144 DAKITV-DGKRAVKPMREWQLSD-----NAAYLHYCPNETIDGIAIDETPDFG----PEVVVTADFSSTI-LSAPLDVSR  212 (386)
T ss_dssp             ECEEEE-TTEEEECCGGGCCCCT-----TCSCEEECSEETTTTEECCCCCCCC----TTCCEEEECTTTT-TSSCCCGGG
T ss_pred             ecCccc-CCCCCCchHHHhhcCC-----CCcEEEEECCcCCcCEecCchhhhc----CCCEEEEEccccc-CCCCCCccc
Confidence            987  2 243 666667666654     578999999887  996 9998775    7999999999999 999999998


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++  ++++|+||| +| |+|+|+||+|+++++.
T Consensus       213 ~~--~~~~s~hK~-lG-P~G~g~l~v~~~~~~~  241 (386)
T 3qm2_A          213 YG--VIYAGAQKN-IG-PAGLTLVIVREDLLGK  241 (386)
T ss_dssp             CS--EEEEETTTT-TC-CTTEEEEEEEGGGCSC
T ss_pred             cC--EEEEecccc-cC-CCccEEEEECHHHHhh
Confidence            75  678999999 77 9999999999988654

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=229.00  Aligned_cols=170  Identities=13%  Similarity=0.087  Sum_probs=137.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCC-CCCCeE-EEcCCcCHHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPF-FRGNFY-MTIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~-~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~  226 (344)
                      .+..+.+.++++|+.++++||++ ++++|+| |+|+|+|+|+++.++.. ++||++ +...+|..+.|...+++.|+.++
T Consensus        52 r~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~  130 (377)
T 3e77_A           52 RSSDFAKIINNTENLVRELLAVP-DNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINI  130 (377)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceE
Confidence            35567778899999999999995 3468999 58999999999998753 348885 45666665556677888899888


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++|.++. +.++.++++..+++     ++++|++++++|  |+++|+  |  ++++|++++|||+|++ |+.|+|+++++
T Consensus       131 ~~~~~~~-~~~~~~~~~~~i~~-----~t~lV~~~h~et~tG~~~pi--i--~~~~~~~~~vD~~q~~-g~~~id~~~~~  199 (377)
T 3e77_A          131 VHPKLGS-YTKIPDPSTWNLNP-----DASYVYYCANETVHGVEFDF--I--PDVKGAVLVCDMSSNF-LSKPVDVSKFG  199 (377)
T ss_dssp             CSCCCSS-SCSCCCGGGCCCCT-----TCSCEEEESEETTTTEECSS--C--CCCTTCCEEEECTTTT-TSSCCCGGGCS
T ss_pred             EeccCCC-cCCCCChHHhccCC-----CccEEEEeCccCchheEchh--h--hccCCCEEEEEccccc-CCCCCchhhcC
Confidence            8888764 34455555544543     578999999887  999999  3  4678999999999999 99999999875


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                        ++++|+||| +| |+|+|+||+|+++++.
T Consensus       200 --~~~~s~~K~-~g-p~G~g~l~~~~~~l~~  226 (377)
T 3e77_A          200 --VIFAGAQKN-VG-SAGVTVVIVRDDLLGF  226 (377)
T ss_dssp             --EEEEEGGGT-TS-CTTCEEEEEETTSCSC
T ss_pred             --EEEEecccc-cC-CCccEEEEEcHHHHhh
Confidence              699999999 76 9999999999998765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.91  E-value=5.4e-25  Score=215.37  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCe---EE-EcCCcCHHHHHHHHHcCCcEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNF---YM-TIIGEELDYVREFASFKESKV  225 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~---iv-S~~eH~~~~ir~la~~~G~kV  225 (344)
                      +..+...++++|+.++++||+++ .++|+| |+|+|+++|+++.++.  +|++   ++ +.++|   .|...+++.|++|
T Consensus        45 ~~~~~~~~~~~r~~la~ll~~~~-~~~v~f~t~~~T~a~n~~~~~~~--~~~~~~~i~~~~~~~---~~~~~a~~~G~~v  118 (361)
T 3m5u_A           45 TKVFEEVHFGAQEKAKKLYELND-DYEVLFLQGGASLQFAMIPMNLA--LNGVCEYANTGVWTK---KAIKEAQILGVNV  118 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHHC--CSSCEEEEECSHHHH---HHHHHHHHTTCCE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCcHHHHHHHHHHhcC--CCCeEEEEeCCHHHH---HHHHHHHHcCCce
Confidence            55667788999999999999963 458999 9999999999999885  5664   22 23433   3455567789999


Q ss_pred             EEEeCCCCCCc--cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCC
Q 035915          226 ILAPEAWLDLR--IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLA  301 (344)
Q Consensus       226 ~~vp~~~~~g~--i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs  301 (344)
                      .+++.++. +.  ++.++  + +++     +|+||++++++|  |+++|.  |.  + .|++++|||+|++ |+.|+|++
T Consensus       119 ~~~~~~~~-g~~~~~~~~--~-l~~-----~t~lv~~~~~e~~tG~~~~~--i~--~-~~~~~~vD~~q~~-g~~~id~~  183 (361)
T 3m5u_A          119 KTVASSEE-SNFDHIPRV--E-FSD-----NADYAYICSNNTIYGTQYQN--YP--K-TKTPLIVDASSDF-FSRKVDFS  183 (361)
T ss_dssp             EEEEECTT-TTSCSCCCC--C-CCT-----TSSEEEEESEETTTTEECSS--CC--C-CSSCEEEECGGGT-TSSCCCCT
T ss_pred             EEEecccC-cCCCcCChh--h-cCC-----CCCEEEEeCCCCCcceeCCc--cc--c-cCCEEEEEccccc-CCCCCCcc
Confidence            99998874 42  34444  3 654     478999998887  999883  32  3 4999999999999 99999998


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +  +||+++|+||| +| |+|+|+||+|+++.+.
T Consensus       184 ~--~d~~~~s~~K~-~g-p~G~g~l~~~~~~~~~  213 (361)
T 3m5u_A          184 N--IALFYGGVQKN-AG-ISGLSCIFIRKDMLER  213 (361)
T ss_dssp             T--EEEEEEETTTT-SS-CTTCEEEEEEHHHHHH
T ss_pred             c--CCEEEEechhc-cC-CCccEEEEEcHHHHhh
Confidence            5  79999999999 77 9999999999887643

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.88  E-value=2.9e-22  Score=191.94  Aligned_cols=171  Identities=15%  Similarity=0.060  Sum_probs=141.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--CCCCCCeE-EEcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--PFFRGNFY-MTIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--~~~~Gd~i-vS~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      .....++++|+.+++++|++++  +|+||+|+|+++++++.++  .+.+|++| ++..+|+  ...+..++++.|++++.
T Consensus        66 ~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~  143 (406)
T 3cai_A           66 RSAAVLDAAREAVADLVNADPG--GVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKW  143 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGG--GEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC--eEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEE
Confidence            3455679999999999999765  7999999999999999887  46789985 4667777  34566666656999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +|.+..++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..++
T Consensus       144 v~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-g~~~~~~~~~~  217 (406)
T 3cai_A          144 AEVDIETGELPTWQWESLISK-----STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAA-PYRLLDIRETD  217 (406)
T ss_dssp             ECCCTTTCCCCGGGHHHHCCT-----TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTT-TTCCCCHHHHC
T ss_pred             EecCcccCCcCHHHHHHHhCC-----CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEccccc-CCCCCCchhcC
Confidence            998744577899999998864     478999988776  99999987764 6999999999999999 99888887788


Q ss_pred             CcEEEEccccCCCCCCCceE-EEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKIT-CLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG-~L~Vr~~~~~  334 (344)
                      +|++++|+||| +| |. +| +++++++..+
T Consensus       218 ~d~~~~s~~K~-~g-~~-~G~~~~~~~~~~~  245 (406)
T 3cai_A          218 ADVVTVNAHAW-GG-PP-IGAMVFRDPSVMN  245 (406)
T ss_dssp             CSEEEEEGGGG-TS-CS-CEEEEESCHHHHH
T ss_pred             CCEEEeehhhh-cC-CC-cCeEEEEehHHHh
Confidence            99999999998 87 84 99 9998876543

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.88  E-value=6.6e-22  Score=185.65  Aligned_cols=169  Identities=22%  Similarity=0.195  Sum_probs=140.9

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC---CCCCeEE-EcCCcCH--HHHHHHHHcCCcE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF---FRGNFYM-TIIGEEL--DYVREFASFKESK  224 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~---~~Gd~iv-S~~eH~~--~~ir~la~~~G~k  224 (344)
                      +......+++.|+.+++++|++++  +|+||+|+|+|+++++.++.+   ++|++++ +..+|+.  ..++.+ +..|++
T Consensus        38 ~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~  114 (382)
T 4hvk_A           38 GFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFE  114 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTE--EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcC--eEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCE
Confidence            344556679999999999999765  799999999999999988754   6899864 6667773  334433 457999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA  301 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs  301 (344)
                      ++.+|.+. ++.++.++|++.+++     ++++|.+++.+|  |.+.|++.|.+ ++++|+ +++|++|+. |..++++.
T Consensus       115 ~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~-~~~~~~~~  186 (382)
T 4hvk_A          115 VEYIPVGK-YGEVDVSFIDQKLRD-----DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASV-GQIEVDVE  186 (382)
T ss_dssp             EEEECBCT-TSCBCHHHHHHHCCT-----TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTB-TTBCCCHH
T ss_pred             EEEeccCC-CCCcCHHHHHHHhcc-----CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhc-CCCCCCch
Confidence            99999885 578999999998865     478999988776  99999987765 689999 999999999 99999888


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      .+++|++++|+||+ +| |.|+|+++++++.
T Consensus       187 ~~~~d~~~~s~~K~-~g-~~g~g~~~~~~~~  215 (382)
T 4hvk_A          187 KIGADMLTISSNDI-YG-PKGVGALWIRKEA  215 (382)
T ss_dssp             HHTCSEEEEESGGG-TS-CTTCEEEEEETTC
T ss_pred             hcCCCEEEEeHHHh-cC-CCceEEEEEcCcc
Confidence            78899999999998 87 7799999998764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.88  E-value=2.6e-21  Score=182.45  Aligned_cols=174  Identities=11%  Similarity=0.040  Sum_probs=146.1

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ......++++|+.+++++|++++..+|+||+|+|+|++ ++.++ +.+||+++ ...+|+...+..+++..|++++.+|.
T Consensus        31 ~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~  108 (384)
T 3zrp_A           31 KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL-LKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRP  108 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-CCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-cCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecC
Confidence            34456779999999999999863237999999999999 88877 67899865 55666555566777778999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      +. ++.++.++|++.+++.    ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|+
T Consensus       109 ~~-~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~~d~  182 (384)
T 3zrp_A          109 SP-GDYVKPGEVEEEVRKS----EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSV-GAEEVKAEEWNVDV  182 (384)
T ss_dssp             ST-TCCCCHHHHHHHHHHS----CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTT-TTSCCCTTTTTCSE
T ss_pred             CC-CCCCCHHHHHHHHHhC----CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccc-cCccccccccCCCE
Confidence            86 5778999999999762    478898887776  99999987765 6999999999999999 99999999889999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +++|+||+ +++|.|+|+++++++..+
T Consensus       183 ~~~s~~K~-~~~~~g~g~~~~~~~~~~  208 (384)
T 3zrp_A          183 YLTASQKA-LGSAAGLGLLLLSPKALS  208 (384)
T ss_dssp             EEEETTST-TCCCSSEEEEEECHHHHH
T ss_pred             EEecCccc-ccCCCceEEEEECHHHHH
Confidence            99999999 766889999999887644

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.87  E-value=7.1e-21  Score=180.27  Aligned_cols=171  Identities=15%  Similarity=0.088  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....+.|+.+++++|++++  +|+||+|+|+|+++++.++.+.+|++|+ ....|+.  ..+..+++..|++++.+|.+.
T Consensus        59 ~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  136 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAA  136 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGG--GEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCHH--HEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCC
Confidence            5678999999999999765  6999999999999999998778899865 5566663  335555666799999998852


Q ss_pred             -CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH----hCCcEEEecccccCcCCccCCCCCCC
Q 035915          233 -LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH----RNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       233 -~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar----~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                       .++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ ++    ++|+++++|.+|+. |..++++...+
T Consensus       137 ~~~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~-g~~~~~~~~~~  210 (390)
T 1elu_A          137 TLNQGDAAAVLANHLGP-----KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSA-GSLPLDFSRLE  210 (390)
T ss_dssp             GSSSSCHHHHHHTTCCT-----TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTB-TTBCCCTTTSC
T ss_pred             CCCccchHHHHHHhcCC-----CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEccccc-CCcCCChhhcC
Confidence             2456788888888764     478888888776  99999987765 68    89999999999999 99999988889


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|++++|+||| +++|.|+|+++++++..+.
T Consensus       211 ~d~~~~s~~K~-~~~~~g~G~~~~~~~~~~~  240 (390)
T 1elu_A          211 VDYYAFTGHKW-FAGPAGVGGLYIHGDCLGE  240 (390)
T ss_dssp             CSEEEEESSST-TCCCTTCEEEEECTTTGGG
T ss_pred             CCEEEcccccc-ccCCCceEEEEECHHhHhh
Confidence            99999999997 4447799999999887654

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.86  E-value=3.4e-21  Score=181.93  Aligned_cols=189  Identities=21%  Similarity=0.142  Sum_probs=147.0

Q ss_pred             cccchHHHHHHhhccCCC--Ch-hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE
Q 035915          131 RTQLEPSRLLDILTKKSS--FP-GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM  204 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss--~~-g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv  204 (344)
                      .|.++..+....+.+|+.  +. +......+++.|+.+++++|++++  +|+||+|+|+|+++++.++.   ..+|++|+
T Consensus        15 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl   92 (382)
T 4eb5_A           15 RILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAIIGYAMRNARKGKHIL   92 (382)
T ss_dssp             HHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE--EEEEESSHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEcCchHHHHHHHHHHHHhhccCCCCEEE
Confidence            344443333333455532  43 334556779999999999999765  79999999999999988874   25788864


Q ss_pred             -EcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          205 -TIIGEEL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       205 -S~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                       ...+|+.  ..++. ++..|++++.+|.++ ++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+
T Consensus        93 ~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~  165 (382)
T 4eb5_A           93 VSAVEHMSVINPAKF-LQKQGFEVEYIPVGK-YGEVDVSFIDQKLRD-----DTILVSVQHANNEIGTIQPVEEISEVLA  165 (382)
T ss_dssp             EETTCCHHHHHHHHH-HTTTTCEEEEECBCT-TSCBCHHHHHHHCCT-----TEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred             ECCCcchHHHHHHHH-HHhCCcEEEEeccCC-CCccCHHHHHHHhcC-----CCeEEEEeccCCCccccCCHHHHHHHHH
Confidence             5667762  33332 345799999999875 577899999998864     478888887776  99999987754 68


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ++|++ ++|++|+. |..++++..+++|++++|+||+ +| |.|+|+++++++.
T Consensus       166 ~~~~~-i~D~a~~~-g~~~~~~~~~~~di~~~s~sK~-~g-~~g~G~~~~~~~~  215 (382)
T 4eb5_A          166 GKAAL-HIDATASV-GQIEVDVEKIGADMLTISSNDI-YG-PKGVGALWIRKEA  215 (382)
T ss_dssp             TSSEE-EEECTTTB-TTBCCCHHHHTCSEEEEETGGG-TC-CSSCEEEEEETTC
T ss_pred             HCCCE-EEEcchhc-CCcccCccccCCCEEEeehHHh-cC-CCceEEEEEcccc
Confidence            99999 99999999 9888887767899999999998 87 8899999999873

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.86  E-value=2.1e-21  Score=191.58  Aligned_cols=173  Identities=12%  Similarity=0.100  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--CCCCCCeE-EEcCCcCH--HHHHHHHHcCCcEE-----E
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--PFFRGNFY-MTIIGEEL--DYVREFASFKESKV-----I  226 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--~~~~Gd~i-vS~~eH~~--~~ir~la~~~G~kV-----~  226 (344)
                      ..++.|+.+++++|++++  +|+||+|+|+++++++.++  +..+|++| +...+|+.  ..+...++..|+++     .
T Consensus       112 ~~~~l~~~la~~~g~~~~--~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~  189 (465)
T 3e9k_A          112 GDESIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRM  189 (465)
T ss_dssp             TTHHHHGGGHHHHTCCGG--GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEE
T ss_pred             hHHHHHHHHHHHcCCCcC--CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEE
Confidence            346789999999999876  7999999999999999887  44455665 46677773  34555667778764     3


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      ..|.+. ++.++.++|++++++..  .++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|++ |..++++.++
T Consensus       190 ~~~~~~-~~~~d~~~l~~~i~~~~--~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~-g~~~~~~~~~  265 (465)
T 3e9k_A          190 IKPREG-EETLRIEDILEVIEKEG--DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAV-GNVELYLHDW  265 (465)
T ss_dssp             ECCCTT-CSSCCHHHHHHHHHHHG--GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTT-TTSCCCHHHH
T ss_pred             EecCCC-CCccCHHHHHHHHHhcC--CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhc-CCcCCchhhc
Confidence            456554 46789999999996311  1489999999887  99999987765 6999999999999999 9999999999


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++||+++|+||++.|+|.|+|+++++++..+.
T Consensus       266 ~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~  297 (465)
T 3e9k_A          266 GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHT  297 (465)
T ss_dssp             TCCEEEECSSSTTCCCTTCCCEEEECGGGTTT
T ss_pred             CCCEEEECcccccccCCCceEEEEEcHHHHhh
Confidence            99999999999933579999999999887654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.86  E-value=4.3e-21  Score=182.34  Aligned_cols=171  Identities=15%  Similarity=0.175  Sum_probs=142.1

Q ss_pred             hhhHHHHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcC--HHHHHHHHHcCCcEE
Q 035915          153 FISIPEIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEE--LDYVREFASFKESKV  225 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV  225 (344)
                      .....+++.|+.+++++|+ +++  +|+||+|+|+|+++++.++.   +.+|+.|+ ...+|+  ...+..+++..|+++
T Consensus        64 ~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~  141 (406)
T 1kmj_A           64 QATEKMENVRKRASLFINARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL  141 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEE
Confidence            3455679999999999999 444  79999999999999999884   67899854 566777  335566666679999


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      +.+|.+. ++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..
T Consensus       142 ~~~~~~~-~~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~-g~~~~~~~~  214 (406)
T 1kmj_A          142 RVIPLNP-DGTLQLETLPTLFDE-----KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAV-MHHPVDVQA  214 (406)
T ss_dssp             EEECBCT-TSCBCGGGHHHHCCT-----TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT-TTSCCCHHH
T ss_pred             EEEecCC-CCCcCHHHHHHHhcc-----CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhc-CCCCCcccc
Confidence            9999875 467899999998864     478888888776  99999987754 7999999999999999 998888777


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +++|++++|+||+ || |.|+|+++++++..+
T Consensus       215 ~~~d~~~~s~~K~-~g-~~G~G~~~~~~~~~~  244 (406)
T 1kmj_A          215 LDCDFYVFSGHKL-YG-PTGIGILYVKEALLQ  244 (406)
T ss_dssp             HTCSEEEEEGGGT-TS-CTTCEEEEECHHHHH
T ss_pred             cCCCEEEEEchhc-cC-CCCcEEEEEeHHHHh
Confidence            7899999999998 86 779999999876544

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.86  E-value=4.4e-21  Score=182.55  Aligned_cols=173  Identities=10%  Similarity=0.083  Sum_probs=141.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .....+++.|+.+++++|++++  .|+||+|+|+|+++++.++ +++|++++ ...+|+...+..+++..|++++.+|.+
T Consensus        39 ~~~~~~~~l~~~la~~~g~~~~--~v~~t~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  115 (392)
T 2z9v_A           39 AFQLLYEKVVDKAQKAMRLSNK--PVILHGEPVLGLEAAAASL-ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP  115 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSC--CEEESSCTHHHHHHHHHHH-CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC--EEEEeCCchHHHHHHHHHh-cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCC
Confidence            3445678999999999999765  7999999999999999987 67898854 566676433445555569999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      . ++.++.++|++.++..   .++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|++
T Consensus       116 ~-~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-g~~~~~~~~~~~d~~  190 (392)
T 2z9v_A          116 Y-NEAIDPQAVADMLKAH---PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSF-GGMKTHPEDCKADIY  190 (392)
T ss_dssp             T-TSCCCHHHHHHHHHHC---TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTB-TTBSCCGGGGTCSEE
T ss_pred             C-CCCCCHHHHHHHHhcC---CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEccccc-CCcccccccccceEE
Confidence            6 4678999999998531   1467888887776  99999987754 6999999999999999 999888888889999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||| +++|.|+|+++++++..+
T Consensus       191 ~~s~sK~-~~~~~g~G~l~~~~~~~~  215 (392)
T 2z9v_A          191 VTGPNKC-LGAPPGLTMMGVSERAWA  215 (392)
T ss_dssp             EECSSST-TCCCSCCEEEEECHHHHH
T ss_pred             EecCccc-ccCCCceeEEEECHHHHH
Confidence            9999998 565889999999876543

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.86  E-value=1.3e-20  Score=180.29  Aligned_cols=172  Identities=12%  Similarity=0.085  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....++.|+.+++++|++++ ..++||+|+|+|+++++.++ +.+||+++ ...+|+.+.+...++..|++++.+|.+.
T Consensus        42 ~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  119 (416)
T 3isl_A           42 FTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASV-IEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW  119 (416)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHh-cCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC
Confidence            355679999999999999754 23459999999999999988 78899865 5666665446666777899999999886


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+++.    ++++|.+++.+|  |.+.|++.|.+ |+++|+++++|++|+. |..++++..+++|+++
T Consensus       120 -~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~~d~~~  193 (416)
T 3isl_A          120 -GTVFDPEDIIREIKKV----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATI-GGCEVKVDEWKIDAAI  193 (416)
T ss_dssp             -TCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTT-TTSCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhhC----CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccc-cCCCcchhhcCCCEEE
Confidence             4688999999999732    368888888776  99999987765 6999999999999999 9999999989999999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+||| +++|.|+|+++++++..+
T Consensus       194 ~s~~K~-l~g~~g~g~~~~~~~~~~  217 (416)
T 3isl_A          194 GGTQKC-LSVPSGMAPITYNERVAD  217 (416)
T ss_dssp             CCSSST-TCCCSSEEEEEECHHHHH
T ss_pred             ecCccc-cCCCCCeEEEEECHHHHH
Confidence            999998 555889999999887643

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.86  E-value=4.7e-21  Score=185.73  Aligned_cols=171  Identities=18%  Similarity=0.156  Sum_probs=138.7

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--C-----CCCC-------------e-EEEcCCc
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--F-----FRGN-------------F-YMTIIGE  209 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~-----~~Gd-------------~-ivS~~eH  209 (344)
                      +......+++.|+.+++++|++++  +|+||+|+|+|+++++.++.  |     ++|+             . +++..+|
T Consensus        56 ~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h  133 (432)
T 3a9z_A           56 GRKAKDIINTARASLAKMIGGKPQ--DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEH  133 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCGG--GEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcC--eEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcc
Confidence            334556779999999999999765  79999999999998887762  1     2453             4 4567777


Q ss_pred             CH--HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC---
Q 035915          210 EL--DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS---  281 (344)
Q Consensus       210 ~~--~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g---  281 (344)
                      +.  ..++.+++..|++++.+|.+..++.++.++|++.+++     ++++|.+++.+|  |.++|+++|.+ |+++|   
T Consensus       134 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~  208 (432)
T 3a9z_A          134 DSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRP-----TTCLVTIMLANNETGVIMPISEISRRIKALNQIR  208 (432)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCT-----TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccC-----CceEEEEECcccCcccccCHHHHHHHHHhcCccc
Confidence            73  3566777777999999998754567899999988864     478999888876  99999987754 68888   


Q ss_pred             -------cEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          282 -------WHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       282 -------~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                             +++++|++|+. |..++++..+++|++++|+||| || |. +|+++++++.
T Consensus       209 ~~~~~~~~~livDea~~~-~~~~~~~~~~~~d~~~~s~~K~-~g-~~-~G~~~~~~~~  262 (432)
T 3a9z_A          209 AASGLPRVLVHTDAAQAL-GKRRVDVEDLGVDFLTIVGHKF-YG-PR-IGALYVRGVG  262 (432)
T ss_dssp             HHHTCCCCEEEEECTTTT-TTSCCCHHHHCCSEEEEEGGGT-TC-CS-CEEEEETTBT
T ss_pred             ccccCCceEEEEEchhhh-CCcccChhhcCCCEEEEehhHh-cC-Cc-ceEEEEcccc
Confidence                   99999999999 9888888777899999999999 87 86 9999999865

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.85  E-value=2.5e-20  Score=175.71  Aligned_cols=169  Identities=20%  Similarity=0.176  Sum_probs=138.6

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcCH--HHHHHHHHcCCcEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEEL--DYVREFASFKESKV  225 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV  225 (344)
                      ......+.+.|+.+++++|++++  +|+||+|+|+|+++++.++.   +.+|++|+ ....|+.  ..+.. ++..|+++
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~  116 (384)
T 1eg5_A           40 IEANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKY-LSMKGFKV  116 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCC--eEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHH-HHhcCCEE
Confidence            33455679999999999999865  79999999999999998875   36899865 4555662  23332 24569999


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC--cEEEecccccCcCCccCCC
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS--WHVLLDATALVVGEDRLNL  300 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g--~~vlvDAaQa~~G~~~LDL  300 (344)
                      +.+|.+. ++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|  +++++|++|+. |..++++
T Consensus       117 ~~v~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~-~~~~~~~  189 (384)
T 1eg5_A          117 KYVPVDS-RGVVKLEELEKLVDE-----DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTI-GKIPFSL  189 (384)
T ss_dssp             EECCBCT-TSCBCHHHHHHHCCT-----TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTT-TTSCCCC
T ss_pred             EEEccCC-CCccCHHHHHHHhCC-----CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhc-CCcccCc
Confidence            9998875 577899999998864     478888887776  99999987754 68889  99999999999 9888888


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ..+++|++++|+||+ || |.|+|+++++++.
T Consensus       190 ~~~~~di~~~s~sK~-~g-~~G~G~~~~~~~~  219 (384)
T 1eg5_A          190 EKLEVDYASFSAHKF-HG-PKGVGITYIRKGV  219 (384)
T ss_dssp             TTTCCSEEEEEGGGG-TS-CTTCEEEEECTTS
T ss_pred             hhcCCCEEEecHHHh-cC-CCceEEEEEcCCC
Confidence            878899999999999 88 7799999999875

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.85  E-value=8.2e-21  Score=180.74  Aligned_cols=171  Identities=9%  Similarity=0.037  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....++++|+.+++++|++++ ++|+||+|+|+|+++++.++ +.+|++++ ...+|+...+..+++..|++++.+|.++
T Consensus        50 ~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  127 (393)
T 2huf_A           50 TLKIMDDIKEGVRYLFQTNNI-ATFCLSASGHGGMEATLCNL-LEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV  127 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCS-EEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEEcCcHHHHHHHHHHHH-hCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC
Confidence            345679999999999999753 36999999999999999987 67899854 5666664334445566799999999875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+++.    ++++|.+++.+|  |.++|++.|. .|+++|+++++|++|+. |..++++..+++|+++
T Consensus       128 -~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~-~~~~~~~~~~~~d~~~  201 (393)
T 2huf_A          128 -GQSLSLDEIRDALLIH----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASL-GGAPMFMDRWEIDAMY  201 (393)
T ss_dssp             -TCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTB-TTBCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhcc----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEccccc-CCCCcchhhcCccEEE
Confidence             4678999999998751    367888887776  9999997775 47999999999999999 9999998888999999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +|+||| +++|.|+|+++++++..
T Consensus       202 ~s~sK~-l~g~~G~G~~~~~~~~~  224 (393)
T 2huf_A          202 TGSQKV-LGAPPGITPVSFSHRAV  224 (393)
T ss_dssp             CCSSST-TCCCSSCEEEEECHHHH
T ss_pred             ECCCcc-cccCCCeEEEEECHHHH
Confidence            999998 66688999999986544

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.85  E-value=2.3e-20  Score=178.32  Aligned_cols=172  Identities=14%  Similarity=0.085  Sum_probs=143.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ....++++|+.+++++|++++ ..|+||+|+|+|+++++.++ +.+||+++ ...+|+.+.+...++..|++++.+|.+.
T Consensus        44 ~~~~~~~~~~~la~~~~~~~~-~~v~~~~sgt~al~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  121 (411)
T 3nnk_A           44 MTHYMNEVMALYRGVFRTENR-WTMLVDGTSRAGIEAILVSA-IRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPW  121 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCS-EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEECCCcHHHHHHHHHHh-cCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCC
Confidence            345679999999999999754 24899999999999999988 78899864 5666654435566677899999999875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+++.    ++++|.+.+.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|+++
T Consensus       122 -~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~d~~~  195 (411)
T 3nnk_A          122 -GEVFTPDQVEDAVKRI----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASL-GGNPLETDVWGLDAVS  195 (411)
T ss_dssp             -TCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTB-TTBCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhhC----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCccc-CCcccchhccCCcEEE
Confidence             5778999999999752    367888887766  99999987754 6999999999999999 9999999989999999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+||| +++|.|+|+++++++..+
T Consensus       196 ~s~~K~-l~~~~g~g~~~~~~~~~~  219 (411)
T 3nnk_A          196 AGMQKC-LGGPSGTSPITLSARMEE  219 (411)
T ss_dssp             CCSTTT-TCCCSSEEEEEECHHHHH
T ss_pred             ecCccc-cCCCCceEEEEECHHHHH
Confidence            999998 556889999999876543

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.85  E-value=2e-20  Score=178.46  Aligned_cols=186  Identities=14%  Similarity=0.071  Sum_probs=146.8

Q ss_pred             ccchHHHHHHhhccCCCC---hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C--CCCC-eEE
Q 035915          132 TQLEPSRLLDILTKKSSF---PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F--FRGN-FYM  204 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss~---~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~--~~Gd-~iv  204 (344)
                      +.+...+.....++|+..   .+......+++.|+.+++++|++++  +|+||+|+|+|+++++.++. +  ++|| +|+
T Consensus        36 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl  113 (400)
T 3vax_A           36 VADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD--ELIFTSGATESNNIALLGLAPYGERTGRRHII  113 (400)
T ss_dssp             HHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG--GEEEESCHHHHHHHHHHTTHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC--cEEEeCCHHHHHHHHHHHHHHhhccCCCCEEE
Confidence            433333333334555332   2334455679999999999999865  79999999999999998872 1  5788 754


Q ss_pred             -EcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH
Q 035915          205 -TIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH  278 (344)
Q Consensus       205 -S~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar  278 (344)
                       +..+|+  ...++.+ +..|++++.+|.+. ++.++.++|++.+++     ++++|.++..+|  |.++|++.|.+ |+
T Consensus       114 ~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~  186 (400)
T 3vax_A          114 TSAIEHKAVLEPLEHL-AGRGFEVDFLTPGP-SGRISVEGVMERLRP-----DTLLVSLMHVNNETGVIQPVAELAQQLR  186 (400)
T ss_dssp             EETTSCHHHHHHHHHH-HTTTCEEEEECCCT-TCCCCHHHHHTTCCT-----TEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred             ECccccHhHHHHHHHH-HhcCCeEEEEccCC-CCCcCHHHHHHhcCC-----CceEEEEECCCCCceeeCcHHHHHHHHH
Confidence             667777  3345544 45799999999886 578899999988864     478999888776  99999987765 68


Q ss_pred             hCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEE-EeC
Q 035915          279 RNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLL-IRK  330 (344)
Q Consensus       279 ~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~-Vr~  330 (344)
                      ++|+++++|++|+. |..++++..+ +|++++|+||+ +| |.|+|+++ +++
T Consensus       187 ~~~~~li~D~a~~~-~~~~~~~~~~-~d~~~~s~~K~-~g-~~g~g~~~~~~~  235 (400)
T 3vax_A          187 ATPTYLHVDAAQGY-GKVPGDLTTP-IDMISISGHKI-GA-PKGVGALVTRRR  235 (400)
T ss_dssp             TSSCEEEEECTTTT-TTSGGGGGSC-CSEEEEETGGG-TS-CSSCEEEEECBC
T ss_pred             hcCCEEEEEhhhhc-CCCCcChhhc-CcEEEEeHHHh-CC-CCceEEEEEecc
Confidence            99999999999999 9999998888 99999999997 87 88999999 887

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.85  E-value=2.6e-20  Score=178.08  Aligned_cols=169  Identities=18%  Similarity=0.163  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEE
Q 035915          155 SIPEIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEEL--DYVREFASFKESKVIL  227 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~  227 (344)
                      ...+++.|+.+++++|+ +++  +|+||+|+|+|+++++.++.   +.+|++|+ ....|+.  ..+..+++..|++++.
T Consensus        71 ~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~  148 (420)
T 1t3i_A           71 TDAYEAVRNKVAKFINARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF  148 (420)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE
Confidence            45679999999999999 554  79999999999999999883   67899854 5666763  3355666667999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +|.+. ++.++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..++
T Consensus       149 v~~~~-~~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~  221 (420)
T 1t3i_A          149 VQLDE-QESFDLEHFKTLLSE-----KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSA-PHYPLDVQLID  221 (420)
T ss_dssp             ECBCT-TSSBCHHHHHHHCCT-----TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTT-TTSCCCHHHHT
T ss_pred             eccCC-CCCcCHHHHHHhhCC-----CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhcc-CCccCchhhcC
Confidence            99874 567899999998864     478888888776  99999987754 6999999999999999 98888887788


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|++++|+||+ +| |.|+|+++++++..+
T Consensus       222 ~di~~~s~sK~-~~-~~g~G~~~~~~~~~~  249 (420)
T 1t3i_A          222 CDWLVASGHKM-CA-PTGIGFLYGKEEILE  249 (420)
T ss_dssp             CSEEEEEGGGT-TS-CTTCEEEEECHHHHH
T ss_pred             CCEEEEehhhh-cC-CCceEEEEEchHHHh
Confidence            99999999997 87 779999999876543

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.84  E-value=6.1e-20  Score=173.53  Aligned_cols=169  Identities=9%  Similarity=0.054  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHcCCC----CCCCeEEEeCCHHHHHHHHHhhCC--CCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCGLP----DDEYLVLFTPNYRDAMMLVGESYP--FFRGNFYMTI-IGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~----p~ey~VVFTsnaTeAlnlva~sl~--~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.+.|+.++++++..    ++  +|+||+|+|+|+++++.++.  +.+|++++.. ..+....+...++..|++++.+|
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~--~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~  116 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQ--PFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVR  116 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCE--EEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCc--eEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEe
Confidence            4677888899888863    33  79999999999999998874  3789986433 44333333344566799999999


Q ss_pred             C-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC--CcEEEecccccCcCCccCCCCCC
Q 035915          230 E-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN--SWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       230 ~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~--g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      . +. ++.++.++|++++++.    ++++|.+++.+|  |.++|++.|.+ |+++  |+++++|++|+. |..++++..+
T Consensus       117 ~~~~-~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~-~~~~~~~~~~  190 (385)
T 2bkw_A          117 PLKI-GESVPLELITEKLSQN----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSI-GCEEFEFDEW  190 (385)
T ss_dssp             CSST-TSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTT-TTSCCCTTTT
T ss_pred             cCCC-CCCCCHHHHHHHHhcC----CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECcccc-CCcccccccc
Confidence            8 64 5778999999998751    367888887776  99999987764 6888  999999999999 9999999888


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|++++|+||| +++|.|+|+++++++..+
T Consensus       191 ~~d~~~~s~~K~-~~~~~G~G~~~~~~~~~~  220 (385)
T 2bkw_A          191 GVDFALTASQKA-IGAPAGLSISLCSSRFMD  220 (385)
T ss_dssp             TCSEEEEESSST-TCCCSCEEEEEECHHHHH
T ss_pred             CceEEEecCccc-cccCCcceEEEEcHHHHH
Confidence            999999999998 666889999999876544

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.84  E-value=3.7e-20  Score=172.25  Aligned_cols=172  Identities=9%  Similarity=0.023  Sum_probs=138.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .....+++.|+.+++++|++.+.+.|+||+|+|+|+++++.++. .  ++ ++...+|+...+...++..|++++.+|.+
T Consensus        30 ~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  106 (353)
T 2yrr_A           30 EVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-R--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFP  106 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-C--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCC
Confidence            34456799999999999996223379999999999999998873 2  55 45666766434555567789999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      . ++.++.++|++.+++.    ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|++
T Consensus       107 ~-~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~~d~~  180 (353)
T 2yrr_A          107 P-GEPVDPEAVARALKRR----RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTL-GMLPFSMRAMGVDYA  180 (353)
T ss_dssp             T-TSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT-TTSCCCHHHHTCSEE
T ss_pred             C-CCCCCHHHHHHHHHhC----CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccc-ccccccccccCceEE
Confidence            5 4678999999998751    367888887776  99999987754 6899999999999999 988888877789999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||| +++|.|+|+++++++..+
T Consensus       181 ~~s~~K~-~~~~~g~G~~~~~~~~~~  205 (353)
T 2yrr_A          181 FTGSQKC-LSAPPGLAPIAASLEARK  205 (353)
T ss_dssp             ECCTTST-TCCCSSCEEEEECHHHHH
T ss_pred             EecCccc-ccCCCceEEEEECHHHHH
Confidence            9999998 655789999999887553

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.84  E-value=2.7e-20  Score=173.93  Aligned_cols=167  Identities=10%  Similarity=0.014  Sum_probs=135.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .....+++.|+.+++++|++++  +|+||+|+|+|+++++.++ +.+|++++ ...+|+...+..+++..|++++.+|.+
T Consensus        31 ~~~~~~~~l~~~la~~~g~~~~--~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  107 (352)
T 1iug_A           31 AAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYP  107 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCc--eEEEcCchHHHHHHHHHhc-cCCCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCC
Confidence            3445678999999999999764  7999999999999999987 67899865 566666432445556679999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC--CcEEEecccccCcCCccCCCCCCCCc
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN--SWHVLLDATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~--g~~vlvDAaQa~~G~~~LDLs~l~~D  306 (344)
                      . ++.++.++|++   +     ++++|.+++.+|  |.++|++.|.+ |+++  |+++++|++|+. |..++++..+++|
T Consensus       108 ~-~~~~d~~~l~~---~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~-~~~~~~~~~~~~d  177 (352)
T 1iug_A          108 Y-GDTPRPEDVAK---E-----GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSL-LVGEVALEAMGVD  177 (352)
T ss_dssp             T-TCCCCTTTSCC---S-----SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTB-TTBCCCSGGGTCS
T ss_pred             C-CCCCCHHHHhc---c-----CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccc-cCcceeccccCee
Confidence            5 45677776654   2     467888887776  99999987765 6888  999999999999 9998888878899


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++++|+||| +++|.|+|+++++++..
T Consensus       178 ~~~~s~~K~-~~~~~g~G~~~~~~~~~  203 (352)
T 1iug_A          178 AAASGSQKG-LMCPPGLGFVALSPRAL  203 (352)
T ss_dssp             EEEEESSST-TCCCSCEEEEEECHHHH
T ss_pred             EEEecCccc-ccCCCceeEEEECHHHH
Confidence            999999998 55588999999987654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.84  E-value=2.8e-20  Score=174.09  Aligned_cols=167  Identities=12%  Similarity=0.146  Sum_probs=134.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....++++|+.+++++|++. .++|+||+|+|+|+++++.++. .+ +.++...+|....+...++..|++++.+|.+.
T Consensus        40 ~~~~~~~~~~~~la~~~g~~~-~~~v~~~~g~t~al~~~~~~l~-~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  116 (362)
T 3ffr_A           40 KFEEVYKTASDNLKTLLELPS-NYEVLFLASATEIWERIIQNCV-EK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF  116 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCT-TEEEEEESCHHHHHHHHHHHHC-SS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCC-CcEEEEeCCchHHHHHHHHhcc-CC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC
Confidence            344677999999999999863 2389999999999999999875 34 44555655554445556677899999999875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC-CcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN-SWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~-g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                       ++.++.++|+  +++     ++++|.+.+.+|  |.++|++.|.+ |+++ |+++++|++|+. |..++++..  +|++
T Consensus       117 -~~~~d~~~l~--~~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~-~~~~~~~~~--~d~~  185 (362)
T 3ffr_A          117 -GKGFYPADIT--VPA-----DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSL-PYPKFDWTK--IDSV  185 (362)
T ss_dssp             -TCCCCGGGCC--CCT-----TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTT-TSSCCCTTS--CSEE
T ss_pred             -CCCCCHHHHh--ccC-----CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEeccccc-CCcccChhH--CcEE
Confidence             4567888776  332     578888888776  99999988865 6899 999999999999 998888875  9999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||| |++|.|+|+++++++..+
T Consensus       186 ~~s~~K~-~~~~~G~g~~~~~~~~~~  210 (362)
T 3ffr_A          186 FFSVQKC-FGLPAGLGVWILNDRVIE  210 (362)
T ss_dssp             EEETTST-TCCCSCCEEEEEEHHHHH
T ss_pred             EEecccc-cCCCCceEEEEECHHHHH
Confidence            9999999 887889999999887643

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.84  E-value=1.3e-19  Score=171.26  Aligned_cols=173  Identities=12%  Similarity=0.125  Sum_probs=141.4

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....+++++.+++++|++ +...|+||+|+|+|+++++.++ +.+|++++ ....|+...+...++..|++++.+|.+.
T Consensus        51 ~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  128 (386)
T 2dr1_A           51 YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNG-VSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP  128 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHH-SCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHh-hcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC
Confidence            3556799999999999997 2236999999999999999987 57898864 5556654335566677899999999875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+...   .++++|.+++.+|  |.+.|++.|.+ |+++|+++++|++|+. |..++++..+++|+++
T Consensus       129 -~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~~di~~  203 (386)
T 2dr1_A          129 -GKAVKPEDLDDALRKN---PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAM-GGADIKFDKWGLDVVF  203 (386)
T ss_dssp             -TCCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTB-TTBCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhcC---CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccc-cCccccccccCCcEEE
Confidence             5678999999998531   1467888887665  99999987754 7999999999999999 9888888888999999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+||+ |++|.|+|+++++++..+
T Consensus       204 ~s~sK~-~~~~~g~G~~~~~~~~~~  227 (386)
T 2dr1_A          204 SSSQKA-FGVPPGLAIGAFSERFLE  227 (386)
T ss_dssp             EETTST-TCCCSSCEEEEECHHHHH
T ss_pred             Eecccc-ccCCCceEEEEECHHHHH
Confidence            999999 887889999999876543

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.83  E-value=2.7e-20  Score=179.27  Aligned_cols=173  Identities=9%  Similarity=-0.015  Sum_probs=137.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCC--cEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKE--SKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G--~kV~  226 (344)
                      .+....+.++++|+.+++++|++ +  .|+||+|+|+|+++++..+  .+|++++ ...+|+...+..+++..|  +++.
T Consensus        29 ~~~~~~~~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~  103 (379)
T 3ke3_A           29 MSKAFQEVMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSST  103 (379)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceE
Confidence            45556678899999999999996 3  7999999999999988765  4789864 566676555555555445  4788


Q ss_pred             EEeCCCCC--------CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHHH-HHhCCcEEEecccccC
Q 035915          227 LAPEAWLD--------LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWISE-AHRNSWHVLLDATALV  292 (344)
Q Consensus       227 ~vp~~~~~--------g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia~-ar~~g~~vlvDAaQa~  292 (344)
                      .++.++.+        +.++.++|+++++..    ++++|++++.+|  |.++|   ++.|.+ |+++|+++++|++|+ 
T Consensus       104 ~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-  178 (379)
T 3ke3_A          104 VLTAERTEDTEAPKPFAPVDIETAVAKIKED----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-  178 (379)
T ss_dssp             EEECEESSCCSSCCCEECCCHHHHHHHHHHH----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-
T ss_pred             EEeccccccccccCCCCCCCHHHHHHHHhhc----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-
Confidence            88764311        257899999998642    367888888775  99999   877754 689999999999997 


Q ss_pred             cCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          293 VGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       293 ~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                       |..++++..+++|++++|+||+ +++|.|+|+++++++..+
T Consensus       179 -g~~~~~~~~~~~d~~~~s~~K~-l~~~~g~g~~~~~~~~~~  218 (379)
T 3ke3_A          179 -GCVWLDMKELGIDVLISAPQKG-WSSTPCAGLVMLSAAAIK  218 (379)
T ss_dssp             -TTCCCCHHHHTCSEEEECTTTT-TCSCCCEEEEEECHHHHH
T ss_pred             -CCccccccccCCCEEEecchhh-cCCCCceEEEEECHHHHH
Confidence             7788998888999999999999 777999999999987643

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.83  E-value=1.7e-19  Score=171.77  Aligned_cols=169  Identities=11%  Similarity=0.042  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+++.|+.+++++|++++ ++|+||+|+|+|+++++.++ +.+|++++ ...+|+...+...++..|++++.+|.+. +
T Consensus        51 ~~~~~l~~~la~~~~~~~~-~~v~~~~g~t~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  127 (396)
T 2ch1_A           51 RTMDEVKDGLRYIFQTENR-ATMCVSGSAHAGMEAMLSNL-LEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-D  127 (396)
T ss_dssp             HHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T
T ss_pred             HHHHHHHHHHHHHhCCCCC-cEEEECCcHHHHHHHHHHHh-cCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-C
Confidence            4578999999999999754 26999999999999999887 57898854 5566664333345667899999999875 5


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                      +.++.++|++.+++.    ++++|.+++.+|  |.++|++.|. .|+++|+++++|++|+. |..++++..+++|++++|
T Consensus       128 ~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~d~~~~s  202 (396)
T 2ch1_A          128 RPFSLETLARAIELH----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASL-CGVPFYMDKWEIDAVYTG  202 (396)
T ss_dssp             SCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTB-TTBCCCTTTTTCCEEECC
T ss_pred             CCCCHHHHHHHHHhC----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccc-cCCccchhhcCcCEEEEc
Confidence            678999999998752    367888887766  9999997665 57999999999999999 999999988899999999


Q ss_pred             cccCCCCCCCceEEEEEeCCCc
Q 035915          312 LDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       312 ~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +||+ +++|.|+|+++++++..
T Consensus       203 ~~K~-~~~~~g~g~~~~~~~~~  223 (396)
T 2ch1_A          203 AQKV-LGAPPGITPISISPKAL  223 (396)
T ss_dssp             CC-C-CCCCSSCEEEEECHHHH
T ss_pred             CCcc-ccCCCCeEEEEECHHHH
Confidence            9998 66688999999987544

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.83  E-value=9.5e-20  Score=175.40  Aligned_cols=173  Identities=19%  Similarity=0.148  Sum_probs=141.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcCH--HHHHHHHHcCCcE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEEL--DYVREFASFKESK  224 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~~--~~ir~la~~~G~k  224 (344)
                      +......++++|+.+++++|++++  .|+||+|+|+|+++++.++.   ..+|+.|+ ...+|+.  ..+..+ +..|++
T Consensus        63 ~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~  139 (423)
T 3lvm_A           63 GWQAEEAVDIARNQIADLVGADPR--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFE  139 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCE
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCC--eEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCE
Confidence            334455679999999999999865  79999999999999888663   13688865 5666762  344443 557999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA  301 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs  301 (344)
                      ++.+|.+. ++.++.++|++.+++     ++++|.++..+|  |.+.|++.|.+ |+++|+++++|++|+. |..++++.
T Consensus       140 ~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-~~~~~~~~  212 (423)
T 3lvm_A          140 VTYLAPQR-NGIIDLKELEAAMRD-----DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSV-GKLPIDLS  212 (423)
T ss_dssp             EEEECCCT-TSCCCHHHHHHHCCT-----TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT-TTSCCCTT
T ss_pred             EEEeccCC-CCccCHHHHHHhcCC-----CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhc-CCCCcChh
Confidence            99999886 578899999999875     478888887766  99999987765 6899999999999999 99999999


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .+++|++++|+||+ +| |.|+|+++++++..+.
T Consensus       213 ~~~~di~~~s~sK~-~g-~~g~G~~~~~~~~~~~  244 (423)
T 3lvm_A          213 QLKVDLMSFSGHKI-YG-PKGIGALYVRRKPRVR  244 (423)
T ss_dssp             TSCCSEEEEESTTT-TS-CSSCEEEEECBTTBCC
T ss_pred             hcCCCEEEechHHh-cC-CCCeEEEEEeccccCC
Confidence            89999999999997 87 7799999999776544

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.83  E-value=1.8e-19  Score=170.41  Aligned_cols=171  Identities=11%  Similarity=0.017  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.|+.+++++|++++ ..|+||+|+|+|+.+++.++ +.+|+.++ ....|....+...++..|++++.+|.+. 
T Consensus        55 ~~~~~~l~~~la~~~~~~~~-~~v~~~~gg~~al~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  131 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNP-LTLVVSGSGHCAMETALFNL-LEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKP-  131 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCS-EEEEESCCTTTHHHHHHHHH-CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-
T ss_pred             HHHHHHHHHHHHHHhCCCCC-cEEEEeCCcHHHHHHHHHhc-CCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCC-
Confidence            45668999999999999743 36999999999999999988 78899865 4444433334556667899999999876 


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLC  310 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~  310 (344)
                      ++.++.++|++.+++.    ++++|.+...+|  |.++|++.|. .|+++|+++++|++|+. |..++++...++|++++
T Consensus       132 ~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~-g~~~~~~~~~~~d~~~~  206 (393)
T 3kgw_A          132 GEHYTLQEVEEGLAQH----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASL-GGVPIYMDQQGIDIMYS  206 (393)
T ss_dssp             TCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTT-TTSCCCTTTTTCCEEEE
T ss_pred             CCCCCHHHHHHHHhhC----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccc-cCcccchhhcCCCEEEe
Confidence            4678999999999762    367888877766  9999997775 47999999999999999 99999998889999999


Q ss_pred             ccccCCCCCCCceEEEEEeCCCcc
Q 035915          311 NLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       311 S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      |+||+ +++|.|+|+++++++..+
T Consensus       207 s~sK~-~~~~~g~g~~~~~~~~~~  229 (393)
T 3kgw_A          207 SSQKV-LNAPPGISLISFNDKAKY  229 (393)
T ss_dssp             ESSST-TCCCSSCEEEEECHHHHH
T ss_pred             cCccc-ccCCCceeEEEECHHHHH
Confidence            99998 666889999999876543

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.83  E-value=1.4e-19  Score=171.28  Aligned_cols=171  Identities=14%  Similarity=0.156  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++++|+.+++++|++++. +++| |+|+|+|+++++.++ +.+||.++. ...+....+...+...|+++..+|.+
T Consensus        50 ~~~~~~~~~~~la~~~g~~~~~-~~i~~~~ggt~al~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~  127 (376)
T 3f0h_A           50 FSSTMLENEKFMLEYAKAPEGS-KAVFMTCSSTGSMEAVVMNC-FTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE  127 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTC-EEEEESSCHHHHHHHHHHHH-CCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCc-eEEEEcCChhHHHHHHHHhc-cCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC
Confidence            3456789999999999997533 4555 899999999999887 578988653 33333333334566679999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      . +..++.++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|++
T Consensus       128 ~-~~~~d~~~l~~~~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~-~~~~~~~~~~~~d~~  200 (376)
T 3f0h_A          128 H-GKKLTKEKLYEYDNQ-----NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAF-LADPFNMNECGADVM  200 (376)
T ss_dssp             T-TCCCCHHHHHTTTTS-----CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT-TTSCCCHHHHTCSEE
T ss_pred             C-CCCCCHHHHHHhhcc-----CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccc-cCccccccccCccEE
Confidence            5 467899999887654     477888887666  99999988865 6999999999999999 988888887889999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||+ |++|.|+|+++++++..+
T Consensus       201 ~~s~~K~-l~~~~G~g~~~~~~~~~~  225 (376)
T 3f0h_A          201 ITGSQKV-LACPPGISVIVLAPRGVE  225 (376)
T ss_dssp             EEETTTT-TCCCSSCEEEEECHHHHH
T ss_pred             EecCccc-ccCCCceEEEEECHHHHH
Confidence            9999999 887889999999887543

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.82  E-value=8.3e-20  Score=174.15  Aligned_cols=171  Identities=9%  Similarity=0.039  Sum_probs=141.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....+++++.+++++|++++ ++|+||+|+|+|+++++.++ +.+|+.++ ....|+.+.+...++..|++++.+|.+.
T Consensus        65 ~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  142 (393)
T 1vjo_A           65 FLALMDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW  142 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEEeCchHHHHHHHHHhc-cCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC
Confidence            445679999999999999653 36999999999999999987 57888854 5555554445566677899999999876


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+++.    ++++|.++..+|  |.++|++.|. .|+++|+++++|.+|++ |..++++...++|+++
T Consensus       143 -~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~di~~  216 (393)
T 1vjo_A          143 -GEVFSLEELRTALETH----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSL-GGVPIFLDAWGVDLAY  216 (393)
T ss_dssp             -TCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTT-TTSCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhhC----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccc-cCcCCcccccCccEEE
Confidence             4678999999998752    256888887766  9999997665 47889999999999999 9999999888999999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +|+||+ +++|.|+|+++++++..
T Consensus       217 ~s~sK~-l~~~~~~G~l~~~~~~~  239 (393)
T 1vjo_A          217 SCSQKG-LGCSPGASPFTMSSRAI  239 (393)
T ss_dssp             CCSSST-TCSCSSCEEEEECHHHH
T ss_pred             EcCccc-ccCCCceEEEEECHHHH
Confidence            999999 77788999999987654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.82  E-value=1.9e-19  Score=168.26  Aligned_cols=170  Identities=12%  Similarity=0.031  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCC-CeEEEeCCHHHHHHHHHhhCCCCCCCeEE-Ec-CCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDE-YLVLFTPNYRDAMMLVGESYPFFRGNFYM-TI-IGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~e-y~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~-~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.|+.+++++| .+++ ..|+||+|+|+|+++++.++ ..+|+.++ .. ..|.. .+...+...|++++.+|.+.
T Consensus        37 ~~~~~l~~~la~~~g-~~~~~~~v~~~~g~t~a~~~~~~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALAT-ASEGYTSVLLQGSGSYAVEAVLGSA-LGPQDKVLIVSNGAYGA-RMVEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHC-SSSSEEEEEEESCHHHHHHHHHHHS-CCTTCCEEEEESSHHHH-HHHHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhC-CCCcCcEEEEecChHHHHHHHHHHh-cCCCCeEEEEeCCCccH-HHHHHHHHhCCceEEEeCCC
Confidence            567899999999999 4322 26999999999999999988 46788754 33 33432 23444555699999999875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVL  309 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv  309 (344)
                       ++.++.++|++.+++.   .++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|+++
T Consensus       114 -~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~di~~  188 (366)
T 1m32_A          114 -VARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSF-GGIPMDIAALHIDYLI  188 (366)
T ss_dssp             -TSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT-TTSCCCTTTTTCSEEE
T ss_pred             -CCCCCHHHHHHHHhcC---CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccc-cCcCccccccCccEEE
Confidence             4678999999999752   1367777777666  99999987754 6899999999999999 9999998888899999


Q ss_pred             EccccCCCCCCCceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+||| +++|.|+|+++++++..+
T Consensus       189 ~s~~K~-~~~~~g~G~~~~~~~~~~  212 (366)
T 1m32_A          189 SSANKC-IQGVPGFAFVIAREQKLA  212 (366)
T ss_dssp             EESSST-TCCCSSEEEEEEEHHHHT
T ss_pred             ecCccc-ccCCCceEEEEECHHHHH
Confidence            999998 666889999999987654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.81  E-value=6.1e-19  Score=177.54  Aligned_cols=172  Identities=16%  Similarity=0.036  Sum_probs=132.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC------CC-CCC------e-EEEcCCcCHHHHHHHH
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP------FF-RGN------F-YMTIIGEELDYVREFA  218 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~------~~-~Gd------~-ivS~~eH~~~~ir~la  218 (344)
                      .....++++|+.+++++|++++  +++||+|+|+|+.+++....      ++ +|+      . +++..+|...  ...+
T Consensus       145 ~~~~le~~~~~~la~l~g~~~~--~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~--~~~~  220 (515)
T 2jis_A          145 VFVLMEEEVLRKLRALVGWSSG--DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI--QKGA  220 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSC--EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC--CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH--HHHH
Confidence            3445668899999999999754  79999999999777655431      12 353      4 4566677742  2223


Q ss_pred             HcCCc---EEEEEeCCCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEeccccc
Q 035915          219 SFKES---KVILAPEAWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATAL  291 (344)
Q Consensus       219 ~~~G~---kV~~vp~~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa  291 (344)
                      +..|.   +++.+|.+. ++.++.++|++++++.. ...++++|++++.+|  |.+.|++.|.+ |+++|+++|+|++|+
T Consensus       221 ~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~  299 (515)
T 2jis_A          221 AFLGLGTDSVRVVKADE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWG  299 (515)
T ss_dssp             HHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred             HHcCCCCCcEEEEecCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhh
Confidence            33455   899999875 58899999999987421 011378888888765  99999988865 699999999999999


Q ss_pred             CcCCccCC-----CCCC-CCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          292 VVGEDRLN-----LALH-RPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       292 ~~G~~~LD-----Ls~l-~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      . +..+.+     +..+ ++|++++|+||| +|+|.|+|+|++|++
T Consensus       300 ~-~~~~~~~~~~~~~g~~~aD~v~~s~hK~-l~~p~g~G~l~~~~~  343 (515)
T 2jis_A          300 G-SVLLSQTHRHLLDGIQRADSVAWNPHKL-LAAGLQCSALLLQDT  343 (515)
T ss_dssp             G-GGGGCTTTGGGGTTGGGCSEEEECTTST-TCCCSCCEEEEESCC
T ss_pred             h-HHHhChhhHhhcCCCccCCEEEECcccc-cCCCCCeeEEEEeCh
Confidence            9 887765     5554 899999999999 888999999999987

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.81  E-value=4.2e-19  Score=167.32  Aligned_cols=171  Identities=15%  Similarity=0.087  Sum_probs=137.4

Q ss_pred             hHHHHHHHHH-HHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe--C
Q 035915          155 SIPEIQARNK-VLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP--E  230 (344)
Q Consensus       155 s~~le~AR~~-IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp--~  230 (344)
                      ...+++.|+. +++++|++    .|+||+|+|+|+++++.++ +.+|++|+ ....|+..  ...++..|++++.+|  .
T Consensus        52 ~~~~~~l~~~~la~~~~~~----~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~--~~~~~~~g~~~~~v~~~~  124 (371)
T 2e7j_A           52 TPPIHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYSS--YVAAERAGLNIALVPKTD  124 (371)
T ss_dssp             -CCHHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHH--HHHHHHTTCEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHcCCC----EEEEeCChHHHHHHHHHHH-hCCCCEEEEccCcchHH--HHHHHHcCCeEEEeeccc
Confidence            3456889999 99999985    6999999999999999988 67899865 55666632  222456799999999  7


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      +. ++.++.++|++.++......++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++..+++|+
T Consensus       125 ~~-~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~-~~~~~~~~~~~~di  202 (371)
T 2e7j_A          125 YP-DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAI-GRMPVSLKEIGADF  202 (371)
T ss_dssp             TT-TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTB-TTBCCCHHHHTCSE
T ss_pred             CC-CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECcccc-CCCCCChhhcCCCE
Confidence            65 46789999999987311002578888888776  99999987754 6999999999999999 98888877778999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|+||+ +++|.|+|+++++++..+.
T Consensus       203 ~~~s~sK~-~~~~~~~G~~~~~~~~~~~  229 (371)
T 2e7j_A          203 IVGSGHKS-MAASGPIGVMGMKEEWAEI  229 (371)
T ss_dssp             EEEEHHHH-SSCCSSCEEEEECTTTTTT
T ss_pred             EEecCCcC-CCCCCCcEEEEEechhhhh
Confidence            99999998 7768899999999887553

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.80  E-value=5.7e-19  Score=169.59  Aligned_cols=163  Identities=11%  Similarity=0.019  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CC----CCCCe-EE-EcCCcCH--HHHHHHHHcC--CcE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PF----FRGNF-YM-TIIGEEL--DYVREFASFK--ESK  224 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~----~~Gd~-iv-S~~eH~~--~~ir~la~~~--G~k  224 (344)
                      ..++++|+.+++++|++++  +|+||+|+|+++.+++.++ .+    .+|+. ++ +...|+.  ..+..+++..  |++
T Consensus        71 ~~~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~  148 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT  148 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHHcCCCcc--cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence            5678999999999999765  6999999999998777765 34    67875 44 4556663  3445555444  899


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA  301 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs  301 (344)
                      ++.+|.        .++|++.+++     ++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |..++++.
T Consensus       149 ~~~v~~--------~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~-g~~~~~~~  214 (416)
T 1qz9_A          149 LRLVDS--------PEELPQAIDQ-----DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSA-GAVPVDLH  214 (416)
T ss_dssp             EEEESS--------GGGHHHHCST-----TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT-TTSCCCHH
T ss_pred             EEEeCc--------HHHHHHHhCC-----CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccc-cCcCCChh
Confidence            988875        4567777754     478999888876  99999987764 6899999999999999 99988887


Q ss_pred             CCCCcEEEEccccCCCCCCCce-EEEEEeCCCccc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKI-TCLLIRKKSFDT  335 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~Gi-G~L~Vr~~~~~~  335 (344)
                      .+++|++++|+||+ ++++.|+ |+++++++..+.
T Consensus       215 ~~~~d~~~~s~~K~-l~~g~~~~g~l~~~~~~~~~  248 (416)
T 1qz9_A          215 QAGADYAIGCTYKY-LNGGPGSQAFVWVSPQLCDL  248 (416)
T ss_dssp             HHTCSEEEECSSST-TCCCTTCCCEEEECTTTTTT
T ss_pred             hcCCCEEEecCccc-CCCCCCCeEEEEECHHHHhc
Confidence            77899999999999 5434466 999999887543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.79  E-value=3.4e-19  Score=176.86  Aligned_cols=168  Identities=10%  Similarity=-0.029  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHH-HHhhC-CCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMML-VGESY-PFFRGNFY-MTIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnl-va~sl-~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      +...++++|+.+++++|++++   ++||+|+||+.|+ ++.++ .+.+|+++ ++..+|+.  +...++..|++++.+|.
T Consensus       131 ~~~~~~~~~~~la~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s--~~~~~~~~G~~~~~v~~  205 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS--PIKAVSFVGMNMRLVET  205 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH--HHHHHHHcCCCceEEEE
Confidence            455679999999999999753   9999999975443 33332 11246664 46667764  33345567999998876


Q ss_pred             ---CCCCCccCHHHHHHHh-hhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEec---ccccCcCCccCCC
Q 035915          231 ---AWLDLRIKGSQLSQYF-RRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLD---ATALVVGEDRLNL  300 (344)
Q Consensus       231 ---~~~~g~i~~~~L~~~l-~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvD---AaQa~~G~~~LDL  300 (344)
                         +. ++.++.++|++++ +... ..++.+|+.+..+|  |.+.|++.|.+ |+++|+++|+|   +.|+. |..++++
T Consensus       206 ~~~~~-~~~~d~~~l~~~i~~~~~-~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~-g~~~~~~  282 (456)
T 2z67_A          206 VLDGD-RVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNN-YYLEKLK  282 (456)
T ss_dssp             EEETT-EEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH-HHHHHHH
T ss_pred             eccCC-CCCcCHHHHHHHHHHHhh-CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHH-HhhHHHH
Confidence               43 5789999999999 4200 01466676666655  99999988865 69999999999   55666 7667765


Q ss_pred             CCC--CCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          301 ALH--RPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       301 s~l--~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ..+  ++||+++|+||| +++|.|+|+|++|+
T Consensus       283 ~~~~~~~D~~~~s~hK~-~~~p~g~G~l~~~~  313 (456)
T 2z67_A          283 KAFKYRVDAVVSSSDKN-LLTPIGGGLVYSTD  313 (456)
T ss_dssp             HHHTSCCSEEEEEHHHH-HCCCSSCEEEEESC
T ss_pred             HhhCCCCCEEEEcCCCC-cCCCCCeEEEEEcC
Confidence            444  899999999999 77799999999964

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.79  E-value=3.3e-19  Score=168.83  Aligned_cols=162  Identities=12%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCe-EEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYL-VLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~-VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .....+++|+.+++++|++++ ++ |+||+|+|+|+++++.++ +.+||+++ ...+|....+...++..| +++.+|.+
T Consensus        47 ~~~~~~~~~~~la~~~g~~~~-~~~i~~t~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~  123 (362)
T 2c0r_A           47 YEAVHNEAQARLLALLGNPTG-YKVLFIQGGASTQFAMIPMNF-LKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASS  123 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSS-EEEEEESSHHHHHHHHHHHHH-CCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEEECCCchHHHHHHHHhc-CCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecc
Confidence            445679999999999999642 24 578899999999999988 47899864 334433332334455568 88888865


Q ss_pred             C---CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccc-ccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          232 W---LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR-YSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       232 ~---~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i-~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      .   .+..++.++++  +++     +|++|.+++.+|  |.+ .|++.|     +|+++++|++|+. |..++|+.++  
T Consensus       124 ~~~~~~~~~~~~~~~--i~~-----~t~~v~~~~~~n~tG~~~~~l~~i-----~~~~vivD~a~~~-~~~~~~~~~~--  188 (362)
T 2c0r_A          124 EASNYMTLPKLQEIQ--LQD-----NAAYLHLTSNETIEGAQFKAFPDT-----GSVPLIGDMSSDI-LSRPFDLNQF--  188 (362)
T ss_dssp             GGGTTCSCCCGGGCC--CCT-----TEEEEEEESEETTTTEECSSCCCC-----TTSCEEEECTTTT-TSSCCCGGGC--
T ss_pred             cccccccCCCHHHcc--cCC-----CcCEEEEeCCcCccceeccccccc-----CCCEEEEEChhhc-cCCccchhHC--
Confidence            2   11224544432  332     589999988876  996 677655     7999999999999 9999888764  


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |++++|+||| || |.|+|+++++++..+.
T Consensus       189 d~~~~s~~K~-~g-~~G~G~l~~~~~~~~~  216 (362)
T 2c0r_A          189 GLVYAGAQKN-LG-PSGVTVVIVREDLVAE  216 (362)
T ss_dssp             SEEEEETTTT-TC-CSSCEEEEEEGGGSSS
T ss_pred             cEEEEecccc-cc-CcCcEEEEEcHHHHhh
Confidence            9999999999 87 8899999999887654

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.79  E-value=6e-18  Score=159.43  Aligned_cols=168  Identities=13%  Similarity=0.017  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC------------CCCCeEE-EcCCcCHHHHHHHHHc
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF------------FRGNFYM-TIIGEELDYVREFASF  220 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~------------~~Gd~iv-S~~eH~~~~ir~la~~  220 (344)
                      .....+++|+.+++++|++++  +|+||+|+|+|+.+++..+..            .+|+.++ ....|+.  +...++.
T Consensus        67 ~~~~~~~l~~~la~~~~~~~~--~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~--~~~~~~~  142 (397)
T 3f9t_A           67 TKLLEEKAVALLGSLLNNKDA--YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFS--FEKGREM  142 (397)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTC--EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCC--CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhH--HHHHHHH
Confidence            345668999999999999865  799999999999988877632            2478854 5666663  2333444


Q ss_pred             CCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-
Q 035915          221 KESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-  296 (344)
Q Consensus       221 ~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-  296 (344)
                      .|++++.+|.+. ++.++.++|++.+++.    ++++|.+...+|  |.+.|++.|.+ |+++|+++++|.+|+. +.. 
T Consensus       143 ~g~~~~~v~~~~-~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-~~~~  216 (397)
T 3f9t_A          143 MDLEYIYAPIKE-DYTIDEKFVKDAVEDY----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGG-LVIP  216 (397)
T ss_dssp             HTCEEEEECBCT-TSSBCHHHHHHHHHHS----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGG-GTGG
T ss_pred             cCceeEEEeeCC-CCcCCHHHHHHHHhhc----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccc-hhhh
Confidence            599999999876 5788999999999761    356777666665  99999987765 6999999999999985 433 


Q ss_pred             -------------cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          297 -------------RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       297 -------------~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                                   ++++.. ++|++++|+||+ +++|.++|+++++++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~-~~~~~~~g~~~~~~~~~  264 (397)
T 3f9t_A          217 FLDDKYKKKGVNYKFDFSL-GVDSITIDPHKM-GHCPIPSGGILFKDIGY  264 (397)
T ss_dssp             GCCGGGCCTTCCCCCSGGG-TCSEEECCTTTT-TCCCSSCEEEEESSGGG
T ss_pred             hcccccccccccccccccc-cCCeEEEccccc-cCCCCCceEEEEeCHHH
Confidence                         566666 899999999999 76688999999987653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.78  E-value=8.3e-18  Score=168.14  Aligned_cols=171  Identities=13%  Similarity=0.009  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---------C---CC------CC-e-EEEcCCcCHHHHH
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---------F---FR------GN-F-YMTIIGEELDYVR  215 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---------~---~~------Gd-~-ivS~~eH~~~~ir  215 (344)
                      ...+++|+.+++++|+++. ..++||+|+|+|+++++.+..         +   .+      |+ . +++..+|..  +.
T Consensus       140 ~le~~~~~~la~~~g~~~~-~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s--~~  216 (497)
T 2qma_A          140 YVEQKVVNWLCDKYDLSEK-ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFT--VQ  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCCTT-CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTH--HH
T ss_pred             HHHHHHHHHHHHHhCCCCC-CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHH--HH
Confidence            3446679999999999752 389999999999988766520         1   02      45 4 456667774  22


Q ss_pred             HHHHcCC--c-EEEEEeCCCCCCccCHHHHHHHhhhcCCC-CCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecc
Q 035915          216 EFASFKE--S-KVILAPEAWLDLRIKGSQLSQYFRRKCKH-TPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       216 ~la~~~G--~-kV~~vp~~~~~g~i~~~~L~~~l~~~~~~-~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDA  288 (344)
                      ..++..|  . +++.+|.+. ++.++.++|++.++++... .++.+|++++.+|  |.+.|++.|.+ |+++|+++|+|+
T Consensus       217 ~~~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~  295 (497)
T 2qma_A          217 KSASWMGLGEKAVMTVDANA-DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG  295 (497)
T ss_dssp             HHHHHTTSCGGGEEEECBCT-TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHcCCCcccEEEEecCC-CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh
Confidence            2233334  3 788999875 5789999999998752100 1133677776665  99999988865 689999999999


Q ss_pred             cccCcCCccCC----CCCC-CCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          289 TALVVGEDRLN----LALH-RPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       289 aQa~~G~~~LD----Ls~l-~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +|+. +..+.+    +..+ ++|++++|+||| +++|.|+|+++++++.
T Consensus       296 a~~~-~~~~~~~~~~~~gi~~~D~i~~s~hK~-l~~p~~~G~l~~~~~~  342 (497)
T 2qma_A          296 AYGG-ALILSSHKSRLKGVERAHSISVDFHKL-FYQTISCGALLVNDKS  342 (497)
T ss_dssp             TTGG-GGGGSTTGGGGTTGGGCSEEEEETTTT-TCCCSSCEEEEESCGG
T ss_pred             hhhH-HHHhCcchHhhcCcccCCEEEEcchhc-cCCCcceEEEEEeCHH
Confidence            9999 877666    3344 789999999999 7779999999998754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.78  E-value=3.7e-18  Score=170.99  Aligned_cols=172  Identities=14%  Similarity=0.068  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------CCC-----C-e-EEEcCCcCHHHHHHHHHc
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------FRG-----N-F-YMTIIGEELDYVREFASF  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------~~G-----d-~-ivS~~eH~~~~ir~la~~  220 (344)
                      ....++.++.+++++|++.+...++||+|+|+|+++++.++..       ++|     + . +++...|..  +...++.
T Consensus       131 ~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s--~~~~~~~  208 (504)
T 2okj_A          131 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS--IKKAGAA  208 (504)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH--HHHHHHH
Confidence            3445677799999999973223799999999999987766421       135     5 4 456677774  2222333


Q ss_pred             CC--c-EEEEEeCCCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc
Q 035915          221 KE--S-KVILAPEAWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV  293 (344)
Q Consensus       221 ~G--~-kV~~vp~~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~  293 (344)
                      .|  . +++.+|.+. ++.++.++|++.+++.. ...++++|++++.+|  |.+.|++.|.+ |+++|+++|+|++|+. 
T Consensus       209 ~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~-  286 (504)
T 2okj_A          209 LGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGG-  286 (504)
T ss_dssp             TTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGG-
T ss_pred             cCCCcccEEEEecCC-CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhh-
Confidence            34  4 899999875 58899999999986421 011378888887765  99999988865 6999999999999998 


Q ss_pred             CCcc-----CCCCC-CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          294 GEDR-----LNLAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       294 G~~~-----LDLs~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +...     .++.. .++|++++++||| +|+|.|+|+|++|++
T Consensus       287 ~~~~~~~~~~~~~g~~~~D~i~~~~hK~-~~~p~~~g~l~~~~~  329 (504)
T 2okj_A          287 GLLMSRKHRHKLNGIERANSVTWNPHKM-MGVLLQCSAILVKEK  329 (504)
T ss_dssp             GGGGCTTTGGGGTTGGGCSEEEECTTST-TCCCSCCEEEEESST
T ss_pred             HHHhCHhhHhhcCCcccCCEEEECchhh-cCCCcceEEEEEECH
Confidence            7653     34443 3799999999999 888999999999975

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.77  E-value=4.4e-18  Score=167.66  Aligned_cols=169  Identities=12%  Similarity=0.014  Sum_probs=130.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCC---CeEEEeCCHHHHHHHHHhhCCC-------CCC-----CeEE-EcCCcCHHHHHH
Q 035915          153 FISIPEIQARNKVLKHCGLPDDE---YLVLFTPNYRDAMMLVGESYPF-------FRG-----NFYM-TIIGEELDYVRE  216 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~e---y~VVFTsnaTeAlnlva~sl~~-------~~G-----d~iv-S~~eH~~~~ir~  216 (344)
                      ......+++++.+++++|++++.   ..++||+|+|+|+++++.++..       .+|     ++++ +. .|..  +..
T Consensus        78 ~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~--~~~  154 (452)
T 2dgk_A           78 QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQIC--WHK  154 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHH--HHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHH--HHH
Confidence            34456789999999999997542   2599999999999987665421       033     4654 55 5442  455


Q ss_pred             HHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh------CCcEEEec
Q 035915          217 FASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR------NSWHVLLD  287 (344)
Q Consensus       217 la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~------~g~~vlvD  287 (344)
                      .++..|++++.+|.+..++.++.++|++++++     +|++|++++.+|  |.+.|++.|.+ |++      +|+++|||
T Consensus       155 ~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD  229 (452)
T 2dgk_A          155 FARYWDVELREIPMRPGQLFMDPKRMIEACDE-----NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHID  229 (452)
T ss_dssp             HHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT-----TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred             HHHHcCceEEEEecCCCCCeECHHHHHHHHhh-----CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEE
Confidence            56667999999998753578999999999975     478888887765  99999988865 577      49999999


Q ss_pred             ccccCcCCc-------cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          288 ATALVVGED-------RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       288 AaQa~~G~~-------~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ++++. +..       +++++..++|++++++||| +++|.|+|++++|++
T Consensus       230 ~a~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~hK~-~~~~~~~G~~~~~~~  278 (452)
T 2dgk_A          230 AASGG-FLAPFVAPDIVWDFRLPRVKSISASGHKF-GLAPLGCGWVIWRDE  278 (452)
T ss_dssp             CTTGG-GTHHHHCTTCCCSTTSTTEEEEEEETTTT-TCCCSSCEEEEESSG
T ss_pred             cccHH-HHHHhhCccchhhcCCCCCcEEEECcccc-cCCCCCeEEEEEcCH
Confidence            99987 543       3566556899999999999 656889999999864

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.76  E-value=5.2e-18  Score=171.04  Aligned_cols=169  Identities=12%  Similarity=0.023  Sum_probs=131.5

Q ss_pred             hhHHHHHHHHHHHHHcCCC--CCC-CeEEEeCCHHHHHHHHHhhCCCC-------CCC-----eE-EEcCCcCHHHHHHH
Q 035915          154 ISIPEIQARNKVLKHCGLP--DDE-YLVLFTPNYRDAMMLVGESYPFF-------RGN-----FY-MTIIGEELDYVREF  217 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~--p~e-y~VVFTsnaTeAlnlva~sl~~~-------~Gd-----~i-vS~~eH~~~~ir~l  217 (344)
                      ..+..+++|+.+++++|++  +++ ..-+||+|+|+|+++++.++...       +|+     ++ ++...|..  +...
T Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s--~~~~  170 (502)
T 3hbx_A           93 TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC--WEKF  170 (502)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH--HHHH
Confidence            4556689999999999997  432 13357999999999877654211       254     54 56666553  5556


Q ss_pred             HHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC------CcEEEecc
Q 035915          218 ASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN------SWHVLLDA  288 (344)
Q Consensus       218 a~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~------g~~vlvDA  288 (344)
                      ++..|++++.+|.++.++.++.++|++++++     ++++|++.+.+|  |.+.|++.|.+ ++++      |+++|||+
T Consensus       171 ~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~  245 (502)
T 3hbx_A          171 ARYFEVELKEVKLSEGYYVMDPQQAVDMVDE-----NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA  245 (502)
T ss_dssp             HHHTTCEEEEECCBTTBCSCCHHHHHHHCCT-----TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_pred             HHHcCceeEEEecCCCcCcCCHHHHHHHHhh-----CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEEC
Confidence            6778999999998764478999999999875     477888777765  99999988865 5777      99999999


Q ss_pred             ccc-------CcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          289 TAL-------VVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       289 aQa-------~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ||+       . +..+.++...++|++++++||| +++|.|+|++++++.
T Consensus       246 A~~~~~~p~~~-~~~~~~~~~~~~D~v~~s~hK~-l~~p~g~G~~~~~~~  293 (502)
T 3hbx_A          246 ASGGFIAPFLY-PELEWDFRLPLVKSINVSGHKY-GLVYAGIGWVIWRNK  293 (502)
T ss_dssp             TTGGGTHHHHC-TTCCCSTTSTTEEEEEEETTTT-TCCCSSCEEEEESSG
T ss_pred             CccchhhhhhC-cccccccCCCCceEEEECcccc-cCCCCCeEEEEEeCH
Confidence            998       4 5566777777899999999999 666999999999864

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.76  E-value=1.9e-17  Score=167.38  Aligned_cols=192  Identities=13%  Similarity=0.033  Sum_probs=137.6

Q ss_pred             HHHHHHhhccC-CCCh-hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------------CCC
Q 035915          136 PSRLLDILTKK-SSFP-GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------------FRG  200 (344)
Q Consensus       136 ~~~L~~~L~gn-ss~~-g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------------~~G  200 (344)
                      .+.+...+..+ ..+. +.......+++++.+++++|.+.+...++||+|+|+|+.+++.+...             .++
T Consensus       113 ~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~  192 (511)
T 3vp6_A          113 GEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK  192 (511)
T ss_dssp             HHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCC
T ss_pred             HHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCC
Confidence            34445444444 2332 33445566889999999999974333799999999998765443211             134


Q ss_pred             CeE-EEcCCcCHHHHHHHHHcCCc---EEEEEeCCCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHH
Q 035915          201 NFY-MTIIGEELDYVREFASFKES---KVILAPEAWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHW  273 (344)
Q Consensus       201 d~i-vS~~eH~~~~ir~la~~~G~---kV~~vp~~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~  273 (344)
                      +.+ ++...|..  +...++..|.   +++.+|.+. ++.++.++|++++++.. ....+++|++++.+|  |.+.|++.
T Consensus       193 ~~v~~s~~~H~s--~~~~~~~~g~g~~~~~~v~~d~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~  269 (511)
T 3vp6_A          193 LVLFTSEQSHYS--IKKAGAALGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQE  269 (511)
T ss_dssp             EEEEEETTSCTH--HHHHHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHH
T ss_pred             eEEEECCCchHH--HHHHHHHcCCCCCcEEEeecCC-CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHH
Confidence            454 56677764  3344444566   899999886 58999999999997531 111267888887775  99999988


Q ss_pred             HHH-HHhCCcEEEecccccCcCCcc-----CCCCC-CCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          274 ISE-AHRNSWHVLLDATALVVGEDR-----LNLAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       274 Ia~-ar~~g~~vlvDAaQa~~G~~~-----LDLs~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      |.+ |+++|+++|||++|+. |...     .++.. .++|++++++||| |+.|.|+|++++++..
T Consensus       270 I~~ia~~~~~~lhvD~a~~~-~~~~~~~~~~~~~g~~~aDsv~~~~hK~-l~~p~g~g~l~~~~~~  333 (511)
T 3vp6_A          270 IADICEKYNLWLHVDAAWGG-GLLMSRKHRHKLNGIERANSVTWNPHKM-MGVLLQCSAILVKEKG  333 (511)
T ss_dssp             HHHHHHHHTCEEEEEETTGG-GGGGCTTTGGGGTTGGGCSEEEECTTST-TCCCSCCEEEEESSTT
T ss_pred             HHHHHHHcCCEEEEEccchh-hHhhChhhhhhccCCccCCEEEECcccc-cCCCcCeEEEEEeCHH
Confidence            865 6999999999999998 7662     22332 3689999999999 7789999999998764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.75  E-value=3.6e-17  Score=159.54  Aligned_cols=162  Identities=7%  Similarity=-0.069  Sum_probs=128.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~  227 (344)
                      ++......++.|+++++++|++    +++||+|+|+|+++++.++ +++|++++ +..+|+.  ..+..+++..|++++.
T Consensus        51 ~~~~~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~  125 (412)
T 2cb1_A           51 ARQKDPTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRY  125 (412)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEE
T ss_pred             CCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence            3444567899999999999984    5999999999999999987 67899854 6667762  3444445567999998


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +|.+       .++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|++|+. +....+....+
T Consensus       126 ~~~~-------~~~l~~~i~~-----~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~-~~~~~~~~~~~  192 (412)
T 2cb1_A          126 VDPE-------PEAVREALSA-----KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGA-AGALCRPLAWG  192 (412)
T ss_dssp             ECSS-------HHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGT-TTTSCCGGGGT
T ss_pred             ECCC-------HHHHHHHhcc-----CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcc-ccccCCccccC
Confidence            8763       6788888865     478999887776  99999988865 6999999999999998 73222222467


Q ss_pred             CcEEEEccccCCCCCCCc-eEEEEEeCC
Q 035915          305 PDFVLCNLDNTQNAQPSK-ITCLLIRKK  331 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G-iG~L~Vr~~  331 (344)
                      +|++++|+||+ +++|.+ +|++++.++
T Consensus       193 ~di~~~S~~K~-~~~~~~~~G~~~~~~~  219 (412)
T 2cb1_A          193 AHVVVESLTKW-ASGHGSVLGGAVLSRE  219 (412)
T ss_dssp             CSEEEEETTTT-TTCSSCCCCEEEEECC
T ss_pred             CeEEEECCccc-ccCCCCcEEEEEEecc
Confidence            99999999999 888876 899998774

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.73  E-value=3.5e-17  Score=162.69  Aligned_cols=192  Identities=11%  Similarity=0.001  Sum_probs=134.9

Q ss_pred             hHHHHHHhhccC-CCCh-hhhhhHHHHHHHHHHHHHcCCCCC-------CCeEEEeCCHHHHHHHHHhhCC--CCC----
Q 035915          135 EPSRLLDILTKK-SSFP-GSFISIPEIQARNKVLKHCGLPDD-------EYLVLFTPNYRDAMMLVGESYP--FFR----  199 (344)
Q Consensus       135 ~~~~L~~~L~gn-ss~~-g~~as~~le~AR~~IA~~Lga~p~-------ey~VVFTsnaTeAlnlva~sl~--~~~----  199 (344)
                      ..+.+...+..+ ..+. +.......+++++.+++++|++.+       ...++||+|+|+|+.+++.+..  +.+    
T Consensus        90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~  169 (486)
T 1js3_A           90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA  169 (486)
T ss_dssp             HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence            444455544444 2333 223444557999999999999742       1268999999999887665431  001    


Q ss_pred             --C---------C--eEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCC-CeeEEEEeCccc
Q 035915          200 --G---------N--FYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHT-PKGLFSYPADIN  265 (344)
Q Consensus       200 --G---------d--~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~-~t~LVa~~avSN  265 (344)
                        |         +  .+++...|..  +...++..|++++.+|.+. ++.++.++|+++++++++.. ...+|++++.+|
T Consensus       170 ~~gd~~~~~~~~~~~v~~s~~~h~s--~~~~~~~~G~~v~~v~~d~-~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n  246 (486)
T 1js3_A          170 ASPGLTQGAVLEKLVAYASDQAHSS--VERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTT  246 (486)
T ss_dssp             HSTTCCHHHHHHHEEEEEETTCCHH--HHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCT
T ss_pred             cCccchhcccCCCEEEEECCCCcHH--HHHHHHhCCCceEEeecCC-CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence              3         2  2346677663  4444555699999999875 68899999999997642111 123777776655


Q ss_pred             --cccccHHHHHH-HHhCCcEEEecccccCcCCccC-CCCC-----CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          266 --GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL-NLAL-----HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       266 --G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L-DLs~-----l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                        |.+.|++.|.+ |+++|+++|+|++|+. +.... ++..     .++|++++++||| ++.|.|+|+|++|++
T Consensus       247 ~tG~~~~l~~I~~la~~~~~~lhvD~a~g~-~~~~~~~~~~~~~g~~~adsi~~~~hK~-~~~p~~~G~l~~~~~  319 (486)
T 1js3_A          247 SCCSFDNLLEVGPICHEEDIWLHVDAAYAG-SAFICPEFRHLLNGVEFADSFNFNPHKW-LLVNFDCSAMWVKRR  319 (486)
T ss_dssp             TTCCBCCHHHHHHHHHHTTCEEEEECTTGG-GGGGSTTTGGGGTTGGGCSEEEECHHHH-SSCCSSCEEEEESCH
T ss_pred             CCCCCCCHHHHHHHHHHcCCEEEEehhhHH-HHHHCHHHHHHhcCccccCeeEEchhhh-cCCCcceEEEEEeCH
Confidence              99999988865 6999999999999997 66543 2321     3689999999999 777999999999865

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.73  E-value=4.9e-17  Score=160.91  Aligned_cols=164  Identities=11%  Similarity=0.046  Sum_probs=126.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.|+++|+++|++    .+++++|+|+|+++++.++ +++||+|+ +..+|+  ...++.++++.|+++.
T Consensus        76 y~r~~~p~~~~le~~lA~l~g~~----~~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~  150 (415)
T 2fq6_A           76 YGRRGTLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS  150 (415)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred             ccCCCCchHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEE
Confidence            44555567789999999999984    3556688899999999887 57899865 666676  2334444556799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCcC--CccCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVG--EDRLN  299 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G--~~~LD  299 (344)
                      +++.+      +.++|++++++     +|++|.+...+|  |.++|++.|.+ |++  +|+++++|++|+. +  ..+++
T Consensus       151 ~v~~~------d~~~le~ai~~-----~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~-~~~~~p~~  218 (415)
T 2fq6_A          151 WFDPL------IGADIVKHLQP-----NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAA-GVLFKALD  218 (415)
T ss_dssp             EECTT------CGGGGGGGCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTT-TTSSCGGG
T ss_pred             EECCC------CHHHHHHhhcc-----CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcc-cccCCccc
Confidence            98764      45678888865     489999988887  99999988865 699  9999999999996 5  34543


Q ss_pred             CCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                         +++|++++|+||+ +|+|.+  .|+++.+++..+
T Consensus       219 ---~g~Div~~S~sK~-lg~~g~~~~G~l~~~~~~~~  251 (415)
T 2fq6_A          219 ---FGIDVSIQAATKY-LVGHSDAMIGTAVCNARCWE  251 (415)
T ss_dssp             ---GTCSEEEEETTTT-TTCSSSCCCEEEEECTTTHH
T ss_pred             ---cCCeEEEEeCccc-cCCCCCceEEEEEeCHHHHH
Confidence               6899999999999 885533  699998876543

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.73  E-value=6e-17  Score=152.75  Aligned_cols=157  Identities=10%  Similarity=0.021  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--FFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.|+.+++++|++    .|+||+|+|+|+++++.++.  +++|++|+ ....|+..  ...+...|++++.+|.+.
T Consensus        32 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~  105 (375)
T 2fnu_A           32 KRSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT--ANMLLESGYTPVFAGIKN  105 (375)
T ss_dssp             HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH--HHHHHHTTCEEEECCBCT
T ss_pred             hHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH--HHHHHHCCCEEEEeccCC
Confidence            35688999999999985    69999999999999999986  77899865 56666632  122344799999998875


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCC--CCCCC-CcEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN--LALHR-PDFV  308 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD--Ls~l~-~DFv  308 (344)
                      . +.++.++|++.+++     ++++|.+.+. +|.+.|++.|.+ |+++|+++++|++|+. |..+.+  +..++ +++.
T Consensus       106 ~-~~~d~~~l~~~i~~-----~~~~v~~~~~-tG~~~~l~~i~~l~~~~~~~li~D~a~~~-~~~~~~~~~~~~~~i~~~  177 (375)
T 2fnu_A          106 D-GNIDELALEKLINE-----RTKAIVSVDY-AGKSVEVESVQKLCKKHSLSFLSDSSHAL-GSEYQNKKVGGFALASVF  177 (375)
T ss_dssp             T-SSBCGGGSGGGCCT-----TEEEEEEECG-GGCCCCHHHHHHHHHHHTCEEEEECTTCT-TCEETTEETTSSSSEEEE
T ss_pred             C-CCCCHHHHHhhcCc-----CceEEEEeCC-cCCccCHHHHHHHHHHcCCEEEEECcccc-CCeECCeeccccCCeEEE
Confidence            3 57888888888764     4777666655 799999987765 6889999999999999 876543  43333 5555


Q ss_pred             EEccccCCCCCCCceEEEEEe
Q 035915          309 LCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      ++|+||+ +| | |+|+++++
T Consensus       178 s~s~~K~-~~-~-g~g~~~~~  195 (375)
T 2fnu_A          178 SFHAIKP-IT-T-AEGGAVVT  195 (375)
T ss_dssp             ECCTTSS-SC-C-SSCEEEEE
T ss_pred             eCCCCCC-cc-c-cCceEEEe
Confidence            6667799 76 8 99999995

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.73  E-value=1.5e-16  Score=159.20  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=127.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.|+++++++|++ +  .|+|++|+ +|+++++.++ +++||+|+ +...|+  ...++..++..|++++
T Consensus       108 y~r~~~~~~~~l~~~lA~l~g~~-~--~v~~~sG~-~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~  182 (445)
T 1qgn_A          108 YGRYGNPTTVVLEEKISALEGAE-S--TLLMASGM-CASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITAT  182 (445)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHTCS-E--EEEESCHH-HHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC-c--EEEeCCHH-HHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence            45556677899999999999985 2  56666665 9999999876 46899865 454454  2233334556799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCe-eEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPK-GLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t-~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      .+|.+      +.++|++++++     +| ++|.+...+|  |.++|++.|.+ ||++|+++++|.+|+. +... +.-.
T Consensus       183 ~v~~~------d~~~l~~ai~~-----~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~-~~~~-~~~~  249 (445)
T 1qgn_A          183 VIDPA------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFAT-PLNQ-KALA  249 (445)
T ss_dssp             EECSS------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC-TTTC-CTTT
T ss_pred             EeCCC------CHHHHHHHhcc-----CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcc-cccC-Cccc
Confidence            98864      57889999976     36 8999988887  99999988865 6999999999999998 7643 2234


Q ss_pred             CCCcEEEEccccCCCCCCCc---eEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPSK---ITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~G---iG~L~Vr~~~~~  334 (344)
                      +++|++++|+||+ +| |.|   +|+++.++++.+
T Consensus       250 ~g~Div~~S~sK~-~g-g~gd~~~G~l~~~~~l~~  282 (445)
T 1qgn_A          250 LGADLVLHSATKF-LG-GHNDVLAGCISGPLKLVS  282 (445)
T ss_dssp             TTCSEEEECTTTT-TT-CSSSCCCEEEEECHHHHH
T ss_pred             cCCEEEEECCccc-cc-ccccceEEEEEECHHHHH
Confidence            7899999999999 88 556   999999876543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.72  E-value=2.6e-17  Score=153.88  Aligned_cols=155  Identities=10%  Similarity=-0.057  Sum_probs=121.3

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCH--HHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEEL--DYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~--~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      +.|+++|+++|++ +  .|+|++| |+|+++++.++ +.+|+++ +...+|+.  ..++.+++..|++++.+|..     
T Consensus         2 ~l~~~la~~~g~~-~--~i~~~sG-~~a~~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----   71 (331)
T 1pff_A            2 ALEGKIAKLEHAE-A--CAATASG-MGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----   71 (331)
T ss_dssp             HHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred             hHHHHHHHHhCCC-e--EEEeCCh-HHHHHHHHHHh-cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC-----
Confidence            5789999999985 3  5666665 89999999877 5688885 46666662  34444456679999988762     


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh-CCcEEEecccccCcCCccCCCCCCCCcEEEEcc
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR-NSWHVLLDATALVVGEDRLNLALHRPDFVLCNL  312 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~-~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~  312 (344)
                       +.++|++.+++     ++++|.+.+.+|  |.++|++.|.+ +++ +|+++++|++|+. |....++ ++++|++++|+
T Consensus        72 -d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~-~~~~~~~-~~~~d~~~~s~  143 (331)
T 1pff_A           72 -VPGNIEKHLKP-----NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFAS-PILTNPL-DLGVDIVVHSA  143 (331)
T ss_dssp             -STTHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTH-HHHCCGG-GGTCSEEEEET
T ss_pred             -CHHHHHHhhcC-----CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcc-cccCChh-hcCCcEEEEEC
Confidence             45678877764     478998888776  99999987765 689 9999999999998 8755455 46899999999


Q ss_pred             ccCCCCCCCc--eEEEEEeC-CCc
Q 035915          313 DNTQNAQPSK--ITCLLIRK-KSF  333 (344)
Q Consensus       313 HK~l~G~P~G--iG~L~Vr~-~~~  333 (344)
                      ||+ ||+|.+  +|++++++ +..
T Consensus       144 ~K~-~~~~~~r~~G~~~~~~~~~~  166 (331)
T 1pff_A          144 TKY-INGHTDVVAGLVCSRADIIA  166 (331)
T ss_dssp             TTT-TSSSSSCCCEEEEECHHHHH
T ss_pred             ccc-cCCCCCceEEEEEeCcHHHH
Confidence            999 888976  89999987 543

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.72  E-value=2e-16  Score=155.36  Aligned_cols=159  Identities=9%  Similarity=-0.046  Sum_probs=122.8

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~v  228 (344)
                      +......++.|+++++++|++ +  .|+|++ +|+|+++++.++ +++|++|+ +..+|+.  ..+..+++..|++++.+
T Consensus        54 ~~~~~~~~~l~~~la~~~g~~-~--~v~~~s-Gt~A~~~~l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~  128 (421)
T 2ctz_A           54 RIMNPTVDVLEKRLAALEGGK-A--ALATAS-GHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFT  128 (421)
T ss_dssp             TTBCHHHHHHHHHHHHHHTCS-E--EEEESS-HHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred             CCCChHHHHHHHHHHHHhCCC-c--eEEecC-HHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence            334456799999999999985 2  455555 599999999887 67899865 5667773  34444456789999888


Q ss_pred             -eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccc-cCcCCccCCCCCC
Q 035915          229 -PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATA-LVVGEDRLNLALH  303 (344)
Q Consensus       229 -p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQ-a~~G~~~LDLs~l  303 (344)
                       +.+      +.++|++++++     ++++|.+.+.+|  |.++|++.|.+ |+++|+++++|++| +. |... +.-.+
T Consensus       129 ~~~~------d~~~l~~~i~~-----~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~-g~~~-~~~~~  195 (421)
T 2ctz_A          129 SREE------RPEEFLALTDE-----KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMG-GYLL-RPLAW  195 (421)
T ss_dssp             CTTC------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGG-GTSC-CGGGG
T ss_pred             CCCC------CHHHHHHhhcc-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc-cccC-Ccccc
Confidence             653      57889888865     488999988876  99999987765 69999999999999 88 7521 22246


Q ss_pred             CCcEEEEccccCCCCCCCc-eEEEEEe
Q 035915          304 RPDFVLCNLDNTQNAQPSK-ITCLLIR  329 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G-iG~L~Vr  329 (344)
                      ++|++++|+||+ +|+|.+ +|+++++
T Consensus       196 ~~Di~~~s~~K~-l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          196 GAALVTHSLTKW-VGGHGAVIAGAIVD  221 (421)
T ss_dssp             TCSEEEEETTTT-TTCSSCCCCEEEEE
T ss_pred             CCeEEEECCccc-ccCCCCcEEEEEEe
Confidence            799999999999 887763 7888886

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.71  E-value=1.4e-16  Score=148.77  Aligned_cols=174  Identities=13%  Similarity=0.098  Sum_probs=131.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .....++.++.+++++|++++  +|+||+|+|+|+++++.++ +.+|+.++ ....|+.......++..|++++.+|.+ 
T Consensus        47 ~~~~~~~~~~~l~~~~g~~~~--~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  122 (359)
T 1svv_A           47 QDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLA-LRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-  122 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHH-CCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-
T ss_pred             ccHHHHHHHHHHHHHhCCCCc--cEEEeCCchHHHHHHHHHH-hCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-
Confidence            345678999999999998765  7999999999999999887 46788864 555555211000234569999999976 


Q ss_pred             CCCccCHHHHHHHhhhcC--CCCCeeEEEEeCccc-ccccc---HHHHH-HHHhCCcEEEecccc---cCcCCccCCCCC
Q 035915          233 LDLRIKGSQLSQYFRRKC--KHTPKGLFSYPADIN-GTRYS---MHWIS-EAHRNSWHVLLDATA---LVVGEDRLNLAL  302 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~--~~~~t~LVa~~avSN-G~i~P---l~~Ia-~ar~~g~~vlvDAaQ---a~~G~~~LDLs~  302 (344)
                       ++.++.++|++.++++.  ...++++|.+.+.++ |.++|   ++.|. .|+++|+++++|.+|   ++ |..+++...
T Consensus       123 -~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~  200 (359)
T 1svv_A          123 -DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASAL-SSPVNDLTL  200 (359)
T ss_dssp             -TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHH-TSTTCCCCH
T ss_pred             -CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhh-cCCCcchhh
Confidence             46789999999987520  011378888887753 99999   55554 468899999999999   77 776666543


Q ss_pred             ----CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 ----HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 ----l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                          ..+|++++|+||+  |+|.|+|+|+++++..+.
T Consensus       201 ~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~  235 (359)
T 1svv_A          201 ADIARLTDMFYIGATKA--GGMFGEALIILNDALKPN  235 (359)
T ss_dssp             HHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTT
T ss_pred             hhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHH
Confidence                4689999999997  559999999998877654

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.71  E-value=8.4e-17  Score=161.16  Aligned_cols=191  Identities=8%  Similarity=-0.046  Sum_probs=131.7

Q ss_pred             HHHHHHhhccC-CCC-hhhhhhHHHHHHHHHHHHHcCCCCCC-------CeEEEeCCHHHHHHHHHhhCCC---------
Q 035915          136 PSRLLDILTKK-SSF-PGSFISIPEIQARNKVLKHCGLPDDE-------YLVLFTPNYRDAMMLVGESYPF---------  197 (344)
Q Consensus       136 ~~~L~~~L~gn-ss~-~g~~as~~le~AR~~IA~~Lga~p~e-------y~VVFTsnaTeAlnlva~sl~~---------  197 (344)
                      .+.+...+..| ..+ .+...+...+++.+.+++++|.+.+.       ...+||+|+|+|+.+.+.....         
T Consensus        91 ~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~  170 (475)
T 3k40_A           91 ADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKEL  170 (475)
T ss_dssp             HHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            33344444444 223 23344556678999999999996421       2699999999997654433210         


Q ss_pred             ---------CCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCC-CCeeEEEEeCccc-
Q 035915          198 ---------FRGNF-YMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKH-TPKGLFSYPADIN-  265 (344)
Q Consensus       198 ---------~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~-~~t~LVa~~avSN-  265 (344)
                               .+++. +++...|.+  +...++..|++++.+|.+. ++ ++.++|++++++.... ..+.+|++++.+| 
T Consensus       171 ~~~~~~~~~~~~~~vi~s~~~H~s--~~~~~~~~g~~~~~v~~d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~  246 (475)
T 3k40_A          171 HPEWDEHTILGKLVGYCSDQAHSS--VERAGLLGGVKLRSVQSEN-HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTN  246 (475)
T ss_dssp             CTTSCHHHHHHHEEEEEETTSCHH--HHHHHHHHTCEEEEECCBT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTT
T ss_pred             CcccccccccCCeEEEECCCchHH--HHHHHHHcCCceEEEECCC-CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCC
Confidence                     02234 456777663  3333444689999999986 57 9999999999753211 1256777776664 


Q ss_pred             -cccccHHHHHH-HHhCCcEEEecccccCcCCccCC-----CCC-CCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          266 -GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN-----LAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       266 -G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD-----Ls~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                       |.+.|++.|.+ |+++|+++|+||+|+. +....+     +.. .++|++++++||| +++|.|+|+|++++..
T Consensus       247 ~G~~~~l~~I~~la~~~~~~lhvD~A~~~-~~~~~~~~~~~~~gi~~~Ds~~~~~hK~-l~~p~g~g~l~~~~~~  319 (475)
T 3k40_A          247 SCAFDYLDECGPVGNKHNLWIHVDAAYAG-SAFICPEYRHLMKGIESADSFNFNPHKW-MLVNFDCSAMWLKDPS  319 (475)
T ss_dssp             TCCBCCHHHHHHHHHHTTCEEEEECTTGG-GGGGSGGGGGGGTTGGGCSEEEECHHHH-SSCCSSCEEEEESSGG
T ss_pred             CcCcCCHHHHHHHHHHhCCeEEEeHHhHH-HHHhCHhhHHHhcCcccCCEEEECchhc-cCCCCceEEEEEeCHH
Confidence             99999988865 6999999999999987 643211     111 2479999999999 7779999999998754

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.71  E-value=2.6e-16  Score=151.27  Aligned_cols=164  Identities=13%  Similarity=0.054  Sum_probs=128.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++.......+.|+++++++|++ +  .|+|++| |+|+++++.++ +++|++++ ...+|+  ...++.+++..|+++..
T Consensus        47 ~~~~~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~  121 (386)
T 1cs1_A           47 SRRGNPTRDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF  121 (386)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred             eCCCCccHHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence            3445566789999999999985 3  5777666 99999999887 57888854 566666  23455566778999998


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +|.+      +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|.+|+. +.....+ .++
T Consensus       122 ~~~~------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~-~~~  188 (386)
T 1cs1_A          122 VDQG------DEQALRAALAE-----KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLS-PALQNPL-ALG  188 (386)
T ss_dssp             ECTT------CHHHHHHHHHT-----CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC-TTTCCGG-GGT
T ss_pred             eCCC------CHHHHHHhhcc-----CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcc-cccCCcc-ccC
Confidence            8863      56788888875     467888887776  99999988865 6999999999999998 7765444 368


Q ss_pred             CcEEEEccccCCCCCCCce--EEEEEeC-CCc
Q 035915          305 PDFVLCNLDNTQNAQPSKI--TCLLIRK-KSF  333 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~Gi--G~L~Vr~-~~~  333 (344)
                      +|++++|+||+ ||+|.+.  |++++++ ++.
T Consensus       189 ~di~~~s~sK~-~~~~~~~~~G~~~~~~~~l~  219 (386)
T 1cs1_A          189 ADLVLHSCTKY-LNGHSDVVAGVVIAKDPDVV  219 (386)
T ss_dssp             CSEEEEETTTT-TTCSSCCCCEEEEESSHHHH
T ss_pred             ceEEEEcCccc-ccCCCCceeEEEEeCcHHHH
Confidence            99999999999 8889764  9999986 443

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.71  E-value=3.5e-17  Score=159.55  Aligned_cols=158  Identities=10%  Similarity=0.000  Sum_probs=121.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~  226 (344)
                      .++.....++++|++||+++|++ +  .|+|++| |+|+++++. + +++||+++ +..+|+.  ..+...++..|++++
T Consensus        49 ~~~~~~~~~~~lr~~la~~~g~~-~--~i~~~sG-t~a~~~al~-~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~  122 (393)
T 1n8p_A           49 YSRSQNPNRENLERAVAALENAQ-Y--GLAFSSG-SATTATILQ-S-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS  122 (393)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHH-T-SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCE
T ss_pred             eecCCChhHHHHHHHHHHHhCCC-c--EEEECCh-HHHHHHHHH-H-cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEE
Confidence            34555567899999999999985 2  4555555 999999998 5 57899865 5555552  233334566799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhC----CcEEEecccccCcCCccCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRN----SWHVLLDATALVVGEDRLN  299 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~----g~~vlvDAaQa~~G~~~LD  299 (344)
                      .+|.+      + ++|++++++     ++++|.++..+|  |.++|++.|.+ |+++    |+++++|++|+. +... +
T Consensus       123 ~v~~~------d-~~l~~~i~~-----~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~-~~~~-~  188 (393)
T 1n8p_A          123 FTNDL------L-NDLPQLIKE-----NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLS-PYIS-N  188 (393)
T ss_dssp             EESSH------H-HHHHHHSCS-----SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTH-HHHC-C
T ss_pred             EeCCC------h-HHHHHhccc-----CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccc-cccC-C
Confidence            88864      4 678888864     488999988887  99999988865 6888    999999999998 7653 5


Q ss_pred             CCCCCCcEEEEccccCCCCCCCc--e-EEEEEe
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSK--I-TCLLIR  329 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~G--i-G~L~Vr  329 (344)
                      +..+++|++++|+||+ || |.|  + |+++++
T Consensus       189 ~~~~~~di~~~S~sK~-~g-~~G~rigG~~~~~  219 (393)
T 1n8p_A          189 PLNFGADIVVHSATKY-IN-GHSDVVLGVLATN  219 (393)
T ss_dssp             GGGGTCSEEEEETTTT-TT-CSSCCCCEEEEES
T ss_pred             HHHcCCeEEEEECccc-cc-CCCCceeEEEEeC
Confidence            5556899999999999 88 668  7 888775

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.1e-16  Score=159.11  Aligned_cols=170  Identities=12%  Similarity=0.097  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC----CCC---CeEE-EcCCcCHHHHHHHHHcCCcEEE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF----FRG---NFYM-TIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~----~~G---d~iv-S~~eH~~~~ir~la~~~G~kV~  226 (344)
                      ....++.++.+++++|++.+...++||+|+|+|+.+++.++..    .+|   ++++ +...|..  +...++..|++++
T Consensus       106 ~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~--~~~~~~~~G~~~~  183 (497)
T 3mc6_A          106 RKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAG--FDKAAYYFGMKLR  183 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHH--HHHHHHHSCCEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHH--HHHHHHHcCCeEE
Confidence            3456789999999999972223799999999999998876521    023   5654 5555553  3444556799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCc----------
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVV----------  293 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~----------  293 (344)
                      .+|.+..++.++.++|++++++     ++++|.++..+|  |.+.|++.|. .|+++|+++++|++|+..          
T Consensus       184 ~v~~~~~~~~~d~~~l~~~i~~-----~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~  258 (497)
T 3mc6_A          184 HVELDPTTYQVDLGKVKKFINK-----NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGY  258 (497)
T ss_dssp             EECBCTTTCSBCTTTTGGGCCS-----SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTC
T ss_pred             EEecCcccCcCCHHHHHHHHhh-----CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcc
Confidence            9998764578899999988865     478888887775  9999998775 479999999999999730          


Q ss_pred             CCc-cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          294 GED-RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       294 G~~-~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      |+. ++++...++|++++++||| +++|.|+|+++++++.
T Consensus       259 ~~~~~~~~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~~~  297 (497)
T 3mc6_A          259 KNLPLLDFRVPGVTSISCDTHKY-GFAPKGSSVIMYRNSD  297 (497)
T ss_dssp             CSCCCCSTTSTTCCEEEEETTTT-TCCCSSCEEEECSSHH
T ss_pred             cCCccccccCCCCcEEEECchhh-cCCCCCceeEEecCHH
Confidence            223 4777778899999999999 6568899999998754

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.70  E-value=1.5e-17  Score=156.46  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=123.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCH-HHHHHHHHhhCCC--CCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNY-RDAMMLVGESYPF--FRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsna-TeAlnlva~sl~~--~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ....+++.|+.+++++|++. .++|+||+|+ |+|+.+++.++..  .+|+.++ +..+|..   ...++..| +++.+|
T Consensus        46 ~~~~~~~l~~~la~~~g~~~-~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~---~~~~~~~g-~~~~v~  120 (360)
T 1w23_A           46 YEEVHEQAQNLLRELLQIPN-DYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA---LKEAKLLG-ETHIAA  120 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH---HHHHHTTS-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCC-CceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH---HHHHHHhC-CeEEee
Confidence            34467899999999999962 2379999999 9999998877643  2355554 3444332   22355679 999998


Q ss_pred             CCCCCCccCHHHHHH-HhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCCc
Q 035915          230 EAWLDLRIKGSQLSQ-YFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~-~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~D  306 (344)
                      .+..++.++.++|++ .+++     ++++|.+++.+|  |.++|  .|.+  ++|+++++|++|+. |..++++..+  |
T Consensus       121 ~~~~~~~~d~~~l~~~~i~~-----~~k~v~~~~~~nptG~~~~--~i~~--~~~~~li~D~a~~~-~~~~~~~~~~--d  188 (360)
T 1w23_A          121 STKANSYQSIPDFSEFQLNE-----NDAYLHITSNNTIYGTQYQ--NFPE--INHAPLIADMSSDI-LSRPLKVNQF--G  188 (360)
T ss_dssp             ECGGGTSCSCCCGGGCCCCT-----TEEEEEEESEETTTTEECS--SCCC--CCSSCEEEECTTTT-TSSCCCGGGC--S
T ss_pred             cccccCcCCccchHhhccCC-----CCCEEEEeCCCCCcceecc--cccc--cCCceEEEechhhc-CCCCcCcccC--C
Confidence            764245567777877 6643     588999988776  99988  3332  78999999999999 9988888764  9


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++|+||+ || |.|+|+++++++..+
T Consensus       189 i~~~s~sK~-~~-~~G~G~~~~~~~~~~  214 (360)
T 1w23_A          189 MIYAGAQKN-LG-PSGVTVVIVKKDLLN  214 (360)
T ss_dssp             EEEEETTTT-TS-CTTCEEEEEEHHHHC
T ss_pred             EEEEEcccc-cC-CCCcEEEEEcHHHHh
Confidence            999999999 88 889999999987654

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.69  E-value=3.8e-16  Score=156.49  Aligned_cols=166  Identities=13%  Similarity=0.033  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeE--EEeCCHHHHHHHHHhhCCCCCC--------CeE-EEcCCcCHHHHHHHHHcCCcE
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLV--LFTPNYRDAMMLVGESYPFFRG--------NFY-MTIIGEELDYVREFASFKESK  224 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~V--VFTsnaTeAlnlva~sl~~~~G--------d~i-vS~~eH~~~~ir~la~~~G~k  224 (344)
                      ...++.++.+++++|++++...+  +||+|+|+|+.+++.++. .+|        ++| ++...|+.  +...++..|++
T Consensus       139 ~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~--~~~~~~~~G~~  215 (514)
T 3mad_A          139 KFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAA--FDKAAQYFGIK  215 (514)
T ss_dssp             HHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTH--HHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchH--HHHHHHHcCCe
Confidence            35577889999999997421146  999999999999887762 122        675 45666663  33334455999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC------
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE------  295 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~------  295 (344)
                      ++.+|.+. ++.++.++|++++++     ++++|.++..+|  |.+.|++.|.+ |+++|+++++|++|+. +.      
T Consensus       216 v~~v~~~~-~~~~d~~~Le~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~-~~~~~~~~  288 (514)
T 3mad_A          216 LVRTPLDA-DYRADVAAMREAITP-----NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG-FILPWAER  288 (514)
T ss_dssp             EEEECBCT-TSCBCHHHHHHHCCT-----TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTT-TTHHHHHH
T ss_pred             eEEeeeCC-CCCCCHHHHHHHhcc-----CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccc-ccchhHHh
Confidence            99999886 678999999999875     478888887776  99999988865 6999999999999764 32      


Q ss_pred             -----ccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          296 -----DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       296 -----~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                           .+++....++|++++|+||| +++|.|+|+++++++.
T Consensus       289 ~g~~~~~~~~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~~~  329 (514)
T 3mad_A          289 LGYPVPPFDFRLEGVTSVSADTHKY-GYGAKGTSVILYRRPD  329 (514)
T ss_dssp             TTCCCCCCSTTSTTCCEEEECTTTT-TCCCSSCEEEEESSHH
T ss_pred             cCCCCCcccccCCCCcEEEECchhc-cCCCCCeEEEEEeCHH
Confidence                 25677778899999999999 5668899999998754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.69  E-value=2.7e-16  Score=149.65  Aligned_cols=160  Identities=13%  Similarity=0.031  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...++.|+++++++|++    +++||+|+|+|+++++.++.+.+|+++ +...+|+..  ...++..|++++.+|.+..+
T Consensus        36 ~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~  109 (373)
T 3frk_A           36 DEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIAT--ALAVSYTGAKPIFVEPDIRT  109 (373)
T ss_dssp             HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHH--HHHHHHHSCEEEEECEETTT
T ss_pred             chHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH--HHHHHHcCCEEEEEeccccc
Confidence            46789999999999984    599999999999999999877889985 467777742  12234459999999887545


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC--CcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR--PDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|.+. ..+|.+.|++.|.+ ++++|+++++|++|+. |.. ++...++  +|++++|
T Consensus       110 ~~~d~~~l~~~l~~-----~~~~v~~~-n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~-g~~-~~~~~~~~~~d~~~~S  181 (373)
T 3frk_A          110 YNIDPSLIESAITE-----KTKAIIAV-HLYGQPADMDEIKRIAKKYNLKLIEDAAQAH-GSL-YKGMKVGSLGDAAGFS  181 (373)
T ss_dssp             TEECGGGTGGGCCT-----TEEEEEEE-CCTTCCCCHHHHHHHHHHHTCEEEEECTTCT-TCE-ETTEETTSSSSEEEEE
T ss_pred             cCcCHHHHHHhcCC-----CCeEEEEE-CCCcCcccHHHHHHHHHHcCCEEEEECCccc-CCE-ECCEeccccccEEEEe
Confidence            78899999888865     46777622 12499999988865 6899999999999999 876 6666555  8999999


Q ss_pred             --cccCCCCCCCceEEEEEeC
Q 035915          312 --LDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       312 --~HK~l~G~P~GiG~L~Vr~  330 (344)
                        .||+ +|++...|+++.++
T Consensus       182 ~~~~K~-l~~~g~gg~~~~~~  201 (373)
T 3frk_A          182 FYPAKN-LGSLGDGGAVVTND  201 (373)
T ss_dssp             CCTTSS-SCCSSSCEEEEESC
T ss_pred             CcCCCc-cCccceeEEEEeCC
Confidence              5599 87422345555543

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.68  E-value=2.2e-15  Score=145.59  Aligned_cols=165  Identities=11%  Similarity=-0.010  Sum_probs=128.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++......++.|+.+++++|++    +++|++++|+|+++++.++ +.+|++++ ....|+  ...++.+++..|++++.
T Consensus        59 ~~~~~~~~~~l~~~la~~~g~~----~~i~~~sG~~a~~~~l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~  133 (398)
T 2rfv_A           59 TRLGNPTTDALEKKLAVLERGE----AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRF  133 (398)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred             eCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEE
Confidence            3445567899999999999985    3566666779999998887 56888864 566666  23444455677999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      +|.+      +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|.+|+. +.....+ .++
T Consensus       134 v~~~------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~-~~~  200 (398)
T 2rfv_A          134 VDAA------KPEEIRAAMRP-----ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS-PYCQQPL-QLG  200 (398)
T ss_dssp             ECTT------SHHHHHHHCCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTC-TTTCCGG-GGT
T ss_pred             eCCC------CHHHHHHhcCC-----CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhC
Confidence            8864      57788888864     478888887776  99999988865 6999999999999998 7653323 357


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +|++++|+||+ |++|.+  .|+++++++..+
T Consensus       201 ~di~~~s~sK~-~~~~g~~~~G~~~~~~~~~~  231 (398)
T 2rfv_A          201 ADIVVHSVTKY-INGHGDVIGGIIVGKQEFID  231 (398)
T ss_dssp             CSEEEEETTTT-TTCSSCCCCEEEEECHHHHH
T ss_pred             CcEEEEeCccc-ccCCCCceEEEEEECHHHHH
Confidence            99999999999 887866  599998876544

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.68  E-value=2.4e-15  Score=145.74  Aligned_cols=164  Identities=10%  Similarity=-0.012  Sum_probs=129.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.|+++++++|++    ++++++|+|+|+++++.++ +++|++++ ....|+  ...++.+++..|++++
T Consensus        53 y~~~~~~~~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~  127 (389)
T 3acz_A           53 YSRLGNPTVEQFEEMVCSIEGAA----GSAAFGSGMGAISSSTLAF-LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVD  127 (389)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHTTT-CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCCChHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEE
Confidence            34445567789999999999985    3667777889999999887 67899865 556666  3345555677899999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC--ccCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE--DRLNLA  301 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~--~~LDLs  301 (344)
                      .+|..      +.++|++.+++     ++++|.+...+|  |.++|++.|.+ ++++|+++++|.+|+. +.  .+++  
T Consensus       128 ~v~~~------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~-~~~~~~~~--  193 (389)
T 3acz_A          128 LIDTS------DVEKVKAAWKP-----NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS-PCFLKPLE--  193 (389)
T ss_dssp             EECTT------CHHHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC-TTTCCGGG--
T ss_pred             EECCC------CHHHHHHhcCC-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-ccccCccc--
Confidence            98863      56788888864     478898887776  99999988865 6899999999999997 65  3554  


Q ss_pred             CCCCcEEEEccccCCCCCCCc--eEEEEEeC-CCcc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSK--ITCLLIRK-KSFD  334 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~-~~~~  334 (344)
                       +++|+++.|+||+ +|+|.+  .|++++++ ++.+
T Consensus       194 -~~~di~~~S~sK~-~~~~~~~~~G~v~~~~~~~~~  227 (389)
T 3acz_A          194 -LGADIALHSVSKY-INGHGDVIGGVSSAKTAEDIA  227 (389)
T ss_dssp             -TTCSEEEEETTTT-TTCSSCCCCEEEEESSHHHHH
T ss_pred             -cCCeEEEECChhh-ccCCCCceeEEEEECcHHHHH
Confidence             5799999999999 888876  59999987 5543

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.68  E-value=1.1e-16  Score=157.05  Aligned_cols=162  Identities=11%  Similarity=0.009  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHH---HHHHHHHhhCCCCCCCeE-EEcCCcC--HHHHHHHHHcCCcEEEE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYR---DAMMLVGESYPFFRGNFY-MTIIGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaT---eAlnlva~sl~~~~Gd~i-vS~~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ..+.+++.|+.+++++|++++  +|+||+|+|   +++++++.   +.+|++| ++..+|+  ...|+.+++..|++++.
T Consensus       106 ~~~~~~~~~~~la~~~g~~~~--~i~~~~g~taa~ea~~~a~~---~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~  180 (438)
T 1wyu_A          106 VLQATFEYQTMIAELAGLEIA--NASMYDGATALAEGVLLALR---ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHHHHHH---HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCcc--ceEEeCcHHHHHHHHHHHHh---cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence            445679999999999999765  689999999   66655542   4578885 4677777  34667777778999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHHH-HHhCCcEEEeccc-ccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDAT-ALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAa-Qa~~G~~~LDLs~l~  304 (344)
                      +|.+  ++.++.++    +++     +|++|.+++.| +|.+.|++.|.+ +|++|+++++|+. |+. |....+ ..++
T Consensus       181 v~~~--~~~~d~~~----i~~-----~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~-g~~~~~-~~~g  247 (438)
T 1wyu_A          181 LPLE--GGRTPLPE----VGE-----EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSL-GVLKPP-GAYG  247 (438)
T ss_dssp             ECCB--TTBCCCCC----CCT-----TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGG-GTBCCH-HHHT
T ss_pred             EcCc--CCccCHHH----hCC-----CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhc-cCcCCC-ccCC
Confidence            9873  35666554    433     58899988863 299999987765 6999999998876 777 765544 4578


Q ss_pred             CcEEEEcccc-----CCCCCCCceEEEEEeCCCccc
Q 035915          305 PDFVLCNLDN-----TQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK-----~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|++++|+||     | +|+| |+|+++++++..+.
T Consensus       248 ~D~~~~s~kk~~~~~~-~~Gp-~~G~l~~~~~~~~~  281 (438)
T 1wyu_A          248 ADIAVGDGQSLGLPMG-FGGP-HFGFLATKKAFVRQ  281 (438)
T ss_dssp             CSEEEEECTTTTCCCG-GGCS-CCEEEEECGGGGGG
T ss_pred             CCEEEECCcccCCCcc-CCCC-CeeEEEEcHHHHHh
Confidence            9999999998     6 6679 99999999876543

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.68  E-value=5.8e-16  Score=147.83  Aligned_cols=161  Identities=9%  Similarity=-0.017  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+++.|+++++++|++ +  .|+||+| |+|+++++.++.+.+|++| +...+|+..  ...++..|++++.+|.+..+
T Consensus        38 ~~~~~l~~~la~~~~~~-~--~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~  111 (388)
T 1b9h_A           38 DEVNSFEREFAAHHGAA-H--ALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISS--SQAAQRLGAVTVPVDVDAAT  111 (388)
T ss_dssp             SHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHhCCC-e--EEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHH--HHHHHHcCCEEEEEecCCCc
Confidence            45788999999999985 2  5666665 9999999999866789985 567777742  23345579999999987644


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCcc--CCCCCCC-CcEEEE
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDR--LNLALHR-PDFVLC  310 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~--LDLs~l~-~DFvv~  310 (344)
                      +.++.++|++.+++     ++++|. +...+|.+.|++.|.+ |+++|+++++|++|+. |...  .++..++ +++++|
T Consensus       112 ~~~d~~~l~~~i~~-----~~~~v~-~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~-g~~~~~~~~~~~~~i~~~S~  184 (388)
T 1b9h_A          112 YNLDPEAVAAAVTP-----RTKVIM-PVHMAGLMADMDALAKISADTGVPLLQDAAHAH-GARWQGKRVGELDSIATFSF  184 (388)
T ss_dssp             CCBCHHHHHHHCCT-----TEEEEC-CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT-TCEETTEEGGGSSSCEEEEC
T ss_pred             CCCCHHHHHHhcCc-----CceEEE-EeCCccCcCCHHHHHHHHHHcCCEEEEecchhc-CCccCCeecccccceEEEEc
Confidence            67899999998864     477777 3211499999987765 6899999999999998 8755  4555554 778888


Q ss_pred             ccccCCCCCCCceEEEEEeCC
Q 035915          311 NLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       311 S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      |.||+ ++++ ..|+++.+++
T Consensus       185 s~~K~-l~g~-~~G~~~~~~~  203 (388)
T 1b9h_A          185 QNGKL-MTAG-EGGAVVFPDG  203 (388)
T ss_dssp             CTTSS-SCSS-SCEEEEECTT
T ss_pred             cCCCc-ccCC-CeEEEEECCH
Confidence            89999 7656 4688887775

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.68  E-value=6.8e-17  Score=155.63  Aligned_cols=161  Identities=11%  Similarity=0.053  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEE-eCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcC--CcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLF-TPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFK--ESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVF-TsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~--G~kV~~vp~  230 (344)
                      ....++++|+.+++++|+++ .++|+| |+|+|+|+++++.++ +++|..+++..+|.. .+...+...  |++++.+|.
T Consensus        76 ~~~~~~~~~~~la~~~g~~~-~~~i~~~t~g~t~al~~~~~~l-~~~gv~~v~~~~~~~-~~~~~~~~~~~g~~~~~v~~  152 (398)
T 2fyf_A           76 VKNLVGRVRSGLAELFSLPD-GYEVILGNGGATAFWDAAAFGL-IDKRSLHLTYGEFSA-KFASAVSKNPFVGEPIIITS  152 (398)
T ss_dssp             HHHHHHHHHHHHHHHTTCCT-TCEEEEEETCHHHHHHHHHHHT-CSSCEEEEECSHHHH-HHHHHHHHCTTSCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCC-CceEEEeCCchhHHHHHHHHHh-cCCCeEEEeCCHHHH-HHHHHHHHhCCCCceEEEec
Confidence            34567999999999999973 237999 999999999999988 566612233333321 122234444  788888887


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCCcEE
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDFV  308 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFv  308 (344)
                      ++  +.+...    .++     .++++|.+++.+|  |.++|+++|.++  +|+++++|++|+. |..++++.  ++|++
T Consensus       153 ~~--g~~~~~----~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~~--~~~~vivD~a~~~-~~~~~~~~--~~di~  216 (398)
T 2fyf_A          153 DP--GSAPEP----QTD-----PSVDVIAWAHNETSTGVAVAVRRPEGS--DDALVVIDATSGA-GGLPVDIA--ETDAY  216 (398)
T ss_dssp             CT--TCCCCC----CCC-----TTCSEEEEESEETTTTEECCCCCCTTC--C-CEEEEECTTTT-TTSCCCGG--GCSEE
T ss_pred             CC--CCCCCc----ccc-----CCCCEEEEeCcCCCcceecchHHhhhh--cCCeEEEEecccc-CCcccCcc--cCcEE
Confidence            63  322221    122     2478898887776  999999877655  8999999999999 99988876  48999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||+ ||.|.|+|+++++++..+
T Consensus       217 ~~s~sK~-~~~~gg~g~l~~~~~~~~  241 (398)
T 2fyf_A          217 YFAPQKN-FASDGGLWLAIMSPAALS  241 (398)
T ss_dssp             EECTTST-TCSCSSEEEEEECHHHHH
T ss_pred             EEecCcc-cCCCCceEEEEECHHHHH
Confidence            9999999 886657999999887644

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.68  E-value=4e-16  Score=148.58  Aligned_cols=166  Identities=13%  Similarity=0.064  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC--CCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA--WLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~--~~~  234 (344)
                      ..+.|+.+++++|++++  +|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.+  ..+
T Consensus        63 ~~~l~~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  137 (381)
T 1v2d_A           63 LPALREALAEEFAVEPE--SVVVTSGATEALYVLLQSL-VGPGDEVVVLEPFFDV--YLPDAFLAGAKARLVRLDLTPEG  137 (381)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECEEETTE
T ss_pred             CHHHHHHHHHhcCCChh--hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh--HHHHHHHcCCEEEEEeCCCCCcc
Confidence            46799999999999876  6999999999999999887 57888854 5566663  223345679999999986  234


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCc--CCccCCCC--CCC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVV--GEDRLNLA--LHR  304 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~--G~~~LDLs--~l~  304 (344)
                      ..++.++|++.+++     ++++|.+...+|  |.++|.   +.|. .|+++|+++++|.+|+..  |....++.  ..+
T Consensus       138 ~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~  212 (381)
T 1v2d_A          138 FRLDLSALEKALTP-----RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPE  212 (381)
T ss_dssp             EECCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTT
T ss_pred             CCcCHHHHHHhcCc-----CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCC
Confidence            56899999888754     478888877666  999984   4443 468999999999999851  22233443  357


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      .|++++|+||+ ||.| |  +|+++++++..+.
T Consensus       213 ~~~~~~s~sK~-~~~~-G~r~G~~~~~~~~~~~  243 (381)
T 1v2d_A          213 RTFTVGSAGKR-LEAT-GYRVGWIVGPKEFMPR  243 (381)
T ss_dssp             TEEEEEEHHHH-TTCG-GGCCEEEECCTTTHHH
T ss_pred             CEEEEeechhh-cCCc-ccceEEEEeCHHHHHH
Confidence            99999999999 8744 8  8999998876543

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.68  E-value=5.4e-17  Score=162.71  Aligned_cols=169  Identities=12%  Similarity=-0.051  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCC--CeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHH----HHcCC--
Q 035915          154 ISIPEIQARNKVLKHCGLPDDE--YLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREF----ASFKE--  222 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~e--y~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~l----a~~~G--  222 (344)
                      .....+.+|+++++++|+++++  .+|+||+|+ +++..++.++ +++||+|+ ...+|..  ..+..+    +...|  
T Consensus        88 ~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~al-l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~  165 (483)
T 1rv3_A           88 IDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIF  165 (483)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHh-cCCCCEEEEecCccCcCcchhhhhcccCcccccce
Confidence            4455689999999999998653  248888888 7776667777 68999965 5666651  111000    00112  


Q ss_pred             cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCccCCC
Q 035915          223 SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNL  300 (344)
Q Consensus       223 ~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL  300 (344)
                      ++++.++++..++.+|.++|++.++..    ++++|.+ +.+| +.++|++.|.+ |+++|+++++|++|+. |....++
T Consensus       166 ~~~v~~~~~~~~~~iD~d~le~~i~~~----~tklIi~-~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~-g~~~~~~  239 (483)
T 1rv3_A          166 FESMAYKVNPDTGYIDYDRLEENARLF----HPKLIIA-GTSCYSRNLDYGRLRKIADENGAYLMADMAHIS-GLVVAGV  239 (483)
T ss_dssp             SEEEEECBCTTTCSBCHHHHHHHHHHH----CCSEEEE-CCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTH-HHHHHTS
T ss_pred             EEEEECccccCCCcCCHHHHHHHHhhc----CCcEEEE-eCCcCCCcCCHHHHHHHHHHcCCEEEEEccchh-cccccCC
Confidence            344444445345789999999999732    4678888 6666 88999988865 6999999999999998 8777776


Q ss_pred             CCC---CCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          301 ALH---RPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       301 s~l---~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ...   ++|++++|+||+ |+||+| |+++++++.
T Consensus       240 ~~~p~~~~div~~s~~K~-l~Gprg-G~i~~~~~~  272 (483)
T 1rv3_A          240 VPSPFEHCHVVTTTTHKT-LRGCRA-GMIFYRRGV  272 (483)
T ss_dssp             SCCGGGTCSEEEEESSGG-GCCCSC-EEEEEECSB
T ss_pred             CCCCCCCCcEEEecCccc-CCCCCc-eEEEEcchh
Confidence            655   799999999999 777998 999999864

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.67  E-value=9.5e-16  Score=148.61  Aligned_cols=164  Identities=9%  Similarity=-0.066  Sum_probs=126.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~  227 (344)
                      ++......++.|+++++++|++    +.+|++++|+|+++++.++ +.+|++++ ....|+.  ..++.+++..|+++..
T Consensus        60 ~r~~~~~~~~l~~~la~~~g~~----~~i~~~sG~~a~~~~l~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~  134 (398)
T 1gc0_A           60 SRISNPTLNLLEARMASLEGGE----AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH  134 (398)
T ss_dssp             ---CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred             cCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence            4445567899999999999985    3455555589999999887 56888854 6667773  3455555667999998


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++.+      +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|.+|+. |....++ .++
T Consensus       135 ~~~~------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~-~~~~~~~-~~~  201 (398)
T 1gc0_A          135 VDMA------DLQALEAAMTP-----ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT-PYLQRPL-ELG  201 (398)
T ss_dssp             ECTT------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTH-HHHCCGG-GGT
T ss_pred             ECCC------CHHHHHHhcCC-----CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcc-cccCCch-hhC
Confidence            8753      57788888864     478999887776  99999988865 6999999999999998 7654444 368


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      +|++++|+||+ ||+|.+  .|+++++++..
T Consensus       202 ~d~~~~S~sK~-~~~~~~~~~G~l~~~~~~~  231 (398)
T 1gc0_A          202 ADLVVHSATKY-LSGHGDITAGIVVGSQALV  231 (398)
T ss_dssp             CSEEEEETTTT-TTCSSSCCCEEEEECHHHH
T ss_pred             ceEEEECCccc-cCCCCCCeEEEEEEChHHH
Confidence            99999999999 888865  59998887544

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.67  E-value=1.2e-15  Score=148.48  Aligned_cols=161  Identities=10%  Similarity=-0.089  Sum_probs=126.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++......++.|+++++++|++    +++||+|+|+|+++++.++ +++|++|+ +..+|+  ...+..+.+..|+++.
T Consensus        60 y~r~~~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~  134 (392)
T 3qhx_A           60 YARTGNPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYT  134 (392)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEE
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEE
Confidence            45556667899999999999984    5899999999999998877 67898865 566666  2344444566799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      .+|.+      +.++|++++++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|.+|+. +.. .+...+
T Consensus       135 ~v~~~------d~~~l~~~i~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~-~~~-~~~~~~  201 (392)
T 3qhx_A          135 PVALA------DLDAVRAAIRP-----TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS-PAL-QQPLSL  201 (392)
T ss_dssp             EECTT------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC-TTT-CCGGGG
T ss_pred             EeCCC------CHHHHHHhhCC-----CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcc-ccc-CChHHh
Confidence            98864      57789888875     478888887776  99999988865 6999999999999987 633 233346


Q ss_pred             CCcEEEEccccCCCCCCCc---eEEEEEeC
Q 035915          304 RPDFVLCNLDNTQNAQPSK---ITCLLIRK  330 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G---iG~L~Vr~  330 (344)
                      ++|+++.|+||+ +|+| |   .|+++.++
T Consensus       202 ~~di~~~S~sK~-lg~~-g~~~~G~v~~~~  229 (392)
T 3qhx_A          202 GADVVLHSTTKY-IGGH-SDVVGGALVTND  229 (392)
T ss_dssp             TCSEEEEETTTT-TTCS-SCCCCEEEEESC
T ss_pred             CCcEEEEcCccc-cCCC-CCceEEEEEECc
Confidence            899999999999 8855 5   78887764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.65  E-value=2.8e-15  Score=141.57  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+++++++|++++  +|+||+|+|+|+++++.++ +++|++++ ....|+.  +...++..|++++.+|.++ ++
T Consensus        68 ~~~~lr~~la~~~~~~~~--~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~-~~  141 (363)
T 3ffh_A           68 WASSLRKEVADFYQLEEE--ELIFTAGVDELIELLTRVL-LDTTTNTVMATPTFVQ--YRQNALIEGAEVREIPLLQ-DG  141 (363)
T ss_dssp             -CHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CSTTCEEEEEESSCHH--HHHHHHHHTCEEEEEECCT-TS
T ss_pred             chHHHHHHHHHHhCCChh--hEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCChHH--HHHHHHHcCCEEEEecCCC-CC
Confidence            357899999999999876  7999999999999999987 67898865 4444442  3344555699999999886 57


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-HhC--CcEEEecccccCcCC-----ccCCC-CCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HRN--SWHVLLDATALVVGE-----DRLNL-ALHR  304 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~~--g~~vlvDAaQa~~G~-----~~LDL-s~l~  304 (344)
                      .++.++|++.+++     ++++|.++..+|  |.++|++.+.++ +..  |+++++|.+|+- ..     ..+.+ ...+
T Consensus       142 ~~d~~~l~~~i~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  215 (363)
T 3ffh_A          142 EHDLEGMLNAIDE-----KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIE-YVTPQPEKHEKLVRTYK  215 (363)
T ss_dssp             CCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGG-GCSSCCCCCGGGGGTCT
T ss_pred             CcCHHHHHHhccc-----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHh-hcCccccCHHHHhhcCC
Confidence            7899999998865     478888887766  999999888654 444  999999999993 21     11111 1234


Q ss_pred             CcEEEEccccCCCCCCCce--EEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKI--TCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~Gi--G~L~Vr~~~~~  334 (344)
                      -++++.|++|+ || +.|+  |+++++++..+
T Consensus       216 ~~i~~~s~sK~-~g-~~G~r~G~~~~~~~~~~  245 (363)
T 3ffh_A          216 NLIITRTFSKI-YG-LASARVGYGIADKEIIR  245 (363)
T ss_dssp             TEEEEEESSST-TC-CSSCCCEEEEECHHHHH
T ss_pred             CEEEEeechhh-hc-CchhceeeeecCHHHHH
Confidence            45888999999 87 4476  99999776543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.9e-15  Score=151.29  Aligned_cols=175  Identities=10%  Similarity=-0.017  Sum_probs=124.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCC--------CeEEEeCCHHHHHHHHHhhCC-----------C-------CCCCeE-EE
Q 035915          153 FISIPEIQARNKVLKHCGLPDDE--------YLVLFTPNYRDAMMLVGESYP-----------F-------FRGNFY-MT  205 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~e--------y~VVFTsnaTeAlnlva~sl~-----------~-------~~Gd~i-vS  205 (344)
                      ......+++.+.+++++|.+.+.        -..+||+|+|+|+.+.+....           +       .++..+ ++
T Consensus       115 ~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s  194 (481)
T 4e1o_A          115 ACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYAS  194 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEc
Confidence            34456678888999999986421        158999999999776443321           0       134454 46


Q ss_pred             cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHHHH-HHhCC
Q 035915          206 IIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWISE-AHRNS  281 (344)
Q Consensus       206 ~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g  281 (344)
                      ...|.+  +...++..|++++.+|.++ ++.++.++|+++++++.. ...+.+|++++.+|  |.+.|++.|.+ |+++|
T Consensus       195 ~~~H~s--~~~~~~~~g~~~~~v~~~~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~  271 (481)
T 4e1o_A          195 DQAHSS--VEKAGLISLVKMKFLPVDD-NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREG  271 (481)
T ss_dssp             TTSCHH--HHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHT
T ss_pred             CcchHH--HHHHHHhCCCceEEEEcCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcC
Confidence            666663  3333344589999999875 689999999999975311 11256677776664  99999988875 69999


Q ss_pred             cEEEecccccCcCCccCC-----CCC-CCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          282 WHVLLDATALVVGEDRLN-----LAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       282 ~~vlvDAaQa~~G~~~LD-----Ls~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +++||||+|+. +....+     +.. ..+|++++++||| ++.|.|+|+|++++..
T Consensus       272 ~~lhvDaA~g~-~~~~~~~~~~~~~gi~~aDsi~~~~hK~-l~~p~g~g~l~~~~~~  326 (481)
T 4e1o_A          272 LWLHIDAAYAG-TAFLCPEFRGFLKGIEYADSFTFNPSKW-MMVHFDCTGFWVKDKY  326 (481)
T ss_dssp             CEEEEECTTGG-GGGGSGGGGGGGTTGGGCSEEEECHHHH-SSCCSSCEEEEESBHH
T ss_pred             CeEEeehhhHH-HHHhChhhHHHhcCcccCCEEEEChHHh-cCCCCceEEEEEeCHH
Confidence            99999999987 643211     111 1469999999999 7779999999998753

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.65  E-value=4.3e-15  Score=139.52  Aligned_cols=167  Identities=11%  Similarity=0.018  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+++|+++|++++  +|+||+|+|+|+++++.++ ..+|+.++ ....|+.  +...++..|++++.+|.++ ++
T Consensus        52 ~~~~l~~~la~~~~~~~~--~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~-~~  125 (354)
T 3ly1_A           52 EILMLGNKLAAHHQVEAP--SILLTAGSSEGIRAAIEAY-ASLEAQLVIPELTYGD--GEHFAKIAGMKVTKVKMLD-NW  125 (354)
T ss_dssp             HHHHHHHHHHHHTTSCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEESSSCTH--HHHHHHHTTCEEEEECCCT-TS
T ss_pred             chHHHHHHHHHHhCCChH--HEEEeCChHHHHHHHHHHH-hCCCCeEEECCCCchH--HHHHHHHcCCEEEEecCCC-CC
Confidence            467899999999999776  7999999999999999987 46888865 4445552  3344556799999999875 46


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-Hh--CCcEEEecccccCcCCccC---C----CCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HR--NSWHVLLDATALVVGEDRL---N----LALH  303 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~--~g~~vlvDAaQa~~G~~~L---D----Ls~l  303 (344)
                      .++.++|++.++..   .++++|.++..+|  |.++|++.+.++ +.  +|+++++|.+|+. ....-   .    +...
T Consensus       126 ~~d~~~l~~~l~~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  201 (354)
T 3ly1_A          126 AFDIEGLKAAVAAY---SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAE-FVNDPRFRSISPMITQG  201 (354)
T ss_dssp             CCCHHHHHHHHHTC---SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGG-GCCCTTCCCSHHHHHTT
T ss_pred             CCCHHHHHHHhccC---CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHH-hccccccCCHHHHhhhc
Confidence            78999999999731   1478888877666  999999877654 54  8999999999985 32211   1    1223


Q ss_pred             -CCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          304 -RPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       304 -~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                       +.++++.|++|+ ||.| .++|+++++++..+
T Consensus       202 ~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~  233 (354)
T 3ly1_A          202 AENIILLKTFSKI-HAMAGMRVGYAVAHPTVIA  233 (354)
T ss_dssp             CSSEEEEEESSST-TCCGGGCCEEEECCHHHHH
T ss_pred             CCCEEEEeeChhh-ccChhhhheeeecCHHHHH
Confidence             567999999999 8733 24799988765443

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.64  E-value=1e-14  Score=142.51  Aligned_cols=163  Identities=9%  Similarity=-0.046  Sum_probs=125.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEe
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAP  229 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp  229 (344)
                      ......++.|+++++++|++    ++++++|+++|+++++.++ +++||+++ ....|+  ...|+..++..|++++.+|
T Consensus        59 ~~~~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~  133 (404)
T 1e5e_A           59 LGNPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN  133 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             CcChHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence            34456789999999999984    4666777789999999887 56899864 555665  2334445666899999998


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh-CCcEEEecccccCcCCccCCCCCCCC
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR-NSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~-~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      .+      +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |++ +|+++++|.+|+. +.....+ .+++
T Consensus       134 ~~------d~~~l~~~i~~-----~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~-~~~~~~~-~~~~  200 (404)
T 1e5e_A          134 TA------IPGEVKKHMKP-----NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS-PMITNPV-DFGV  200 (404)
T ss_dssp             TT------STTHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC-TTTCCGG-GGTC
T ss_pred             CC------CHHHHHHhcCC-----CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCch-hhhCCcc-ccCC
Confidence            75      45678888864     478998887776  99999987765 699 9999999999998 7632222 2589


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      |+++.|+||+ |++|.+  .|+++++++..+
T Consensus       201 di~~~S~sK~-~~~~g~ri~G~~~~~~~~~~  230 (404)
T 1e5e_A          201 DVVVHSATKY-INGHTDVVAGLICGKADLLQ  230 (404)
T ss_dssp             SEEEEETTTT-TTCSSCCCCEEEEECHHHHH
T ss_pred             EEEEEcCccc-cCCCCCCeEEEEEECHHHHH
Confidence            9999999999 888866  699999876554

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.64  E-value=1.6e-15  Score=151.02  Aligned_cols=169  Identities=12%  Similarity=-0.019  Sum_probs=128.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHH---hhCCCCCCC-----eE-EEcCCcCHHHHHHHHHcCCcE
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVG---ESYPFFRGN-----FY-MTIIGEELDYVREFASFKESK  224 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva---~sl~~~~Gd-----~i-vS~~eH~~~~ir~la~~~G~k  224 (344)
                      ..+.+++.++.+++++|++.   .++||+|+|+|+.+.+   ..+...+||     +| ++...|...  ...++..|++
T Consensus       105 ~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~--~~~~~~~G~~  179 (474)
T 1wyu_B          105 ALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSN--PATASMAGYQ  179 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHH--HHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhh--HHHHHHCCCE
Confidence            44567999999999999963   4789999999988633   222123555     64 456667632  2334567999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccc-ccHHHHHH-HHhCCcEEEecccccCcCCc-cCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTR-YSMHWISE-AHRNSWHVLLDATALVVGED-RLNL  300 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i-~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~LDL  300 (344)
                      ++.+|.+. ++.++.++|++.+++     ++++|.++..|+ |.+ .|++.|.+ |+++|+++++|++|+. +.. .++.
T Consensus       180 vv~v~~~~-~~~~d~~~L~~~i~~-----~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~-~~~g~~~~  252 (474)
T 1wyu_B          180 VREIPSGP-EGEVDLEALKRELGP-----HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLN-AIMGWARP  252 (474)
T ss_dssp             EEEECBCT-TSSBCHHHHHHHCST-----TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGG-GTTTTCCH
T ss_pred             EEEecCCC-CCCcCHHHHHHhhCC-----CceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhh-hhccCCCc
Confidence            99999875 578999999999865     478888876543 988 69988865 6999999999999987 654 4444


Q ss_pred             CCCCCcEEEEccccCCCCCCC-----ceEEEEEeCCCccc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPS-----KITCLLIRKKSFDT  335 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~-----GiG~L~Vr~~~~~~  335 (344)
                      ..+++|++++|+||+ |+.|.     |+|+++++++..+.
T Consensus       253 ~~~g~di~~~s~~K~-~~~p~g~gG~~~G~~~~~~~l~~~  291 (474)
T 1wyu_B          253 GDMGFDVVHLNLHKT-FTVPHGGGGPGSGPVGVKAHLAPY  291 (474)
T ss_dssp             HHHTCSEEECCTTTT-TCCCCTTSCCCCCCEEECGGGGGG
T ss_pred             ccCCCcEEEEeCccc-cccCCCCCCCCeEEEEEcHHHHHh
Confidence            456899999999999 88786     69999999876543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.64  E-value=4.7e-15  Score=145.20  Aligned_cols=153  Identities=13%  Similarity=0.037  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...++.|+++|+++|++ +  .|+|++| ++|+++++. + +++|++|+ ....|+  ...+..+++..|++++.+|.+ 
T Consensus        67 p~~~~l~~~la~~~g~~-~--~i~~~sG-~~ai~~~~~-l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-  139 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAK-Y--CLAFASG-LAATVTITH-L-LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-  139 (403)
T ss_dssp             HHHHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred             chHHHHHHHHHHHhCCC-c--EEEECCH-HHHHHHHHH-H-hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-
Confidence            34678999999999985 2  5777766 699999988 6 67899865 556666  233555556779999998864 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCC-cEEEecccccCcCC--ccCCCCCCCCc
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNS-WHVLLDATALVVGE--DRLNLALHRPD  306 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g-~~vlvDAaQa~~G~--~~LDLs~l~~D  306 (344)
                           +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++| +++++|.+|+. +.  .+++   +++|
T Consensus       140 -----d~~~l~~~i~~-----~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~-~~~~~~~~---~~~d  205 (403)
T 3cog_A          140 -----KIKLLEAAITP-----ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMS-PYFQRPLA---LGAD  205 (403)
T ss_dssp             -----SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTC-TTTCCTTT---TTCS
T ss_pred             -----CHHHHHHhcCc-----CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcc-cccCCccc---cCCe
Confidence                 56788888864     478998887777  99999988865 68999 99999999998 75  3444   5899


Q ss_pred             EEEEccccCCCCCCCce--EEEEEeC
Q 035915          307 FVLCNLDNTQNAQPSKI--TCLLIRK  330 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~Gi--G~L~Vr~  330 (344)
                      +++.|+||+ ||+|.|+  |++++++
T Consensus       206 iv~~S~sK~-~~g~~~~~~G~v~~~~  230 (403)
T 3cog_A          206 ISMYSATKY-MNGHSDVVMGLVSVNC  230 (403)
T ss_dssp             EEEEETTTT-TTCSSCCCCEEEEECC
T ss_pred             EEEEcChhh-ccCCCCCeEEEEEECc
Confidence            999999999 8889774  9998864

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.64  E-value=5.4e-15  Score=139.89  Aligned_cols=159  Identities=11%  Similarity=0.036  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...++.|+.+++++|++    .++||+|+|+|+++++.++.+.+|+.++ ....|+.  ....++..|++++.+|.+ .+
T Consensus        38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~--~~~~~~~~g~~~~~~~~~-~~  110 (374)
T 3uwc_A           38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIA--SVGAIVQAGATPVLVDSE-NG  110 (374)
T ss_dssp             HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH--HHHHHHHTTCEEEEECBC-TT
T ss_pred             hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHH--HHHHHHHcCCEEEEEecC-CC
Confidence            45688999999999985    5999999999999999998778899864 5666653  223345679999999987 35


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC--CcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR--PDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|. +...+|.+.|++.|.+ |+++|+++++|++|+. |.. ++....+  +|++++|
T Consensus       111 ~~~d~~~l~~~~~~-----~~~~v~-~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~-g~~-~~~~~~~~~~d~~~~s  182 (374)
T 3uwc_A          111 YVIDPEKIEAAITD-----KTKAIM-PVHYTGNIADMPALAKIAKKHNLHIVEDACQTI-LGR-INDKFVGSWGQFACFS  182 (374)
T ss_dssp             SSBCGGGTGGGCCT-----TEEEEC-CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCT-TCE-ETTEETTSSSSEEEEE
T ss_pred             CCcCHHHHHHhCCC-----CceEEE-EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCcc-Cce-eCCeeccccccEEEEe
Confidence            77899999888864     466666 2222499999987765 6999999999999998 865 5544444  7999999


Q ss_pred             cc--cCCCCCCCceEEEEEeC
Q 035915          312 LD--NTQNAQPSKITCLLIRK  330 (344)
Q Consensus       312 ~H--K~l~G~P~GiG~L~Vr~  330 (344)
                      +|  |+ +|++...|+++.++
T Consensus       183 ~~~~K~-l~~~g~~g~~~~~~  202 (374)
T 3uwc_A          183 LHPLKN-LNVWSDAGVIITHS  202 (374)
T ss_dssp             CSSSSS-SCCSSCCEEEEESC
T ss_pred             CCCCCc-CCccceeEEEEeCC
Confidence            88  99 87433355665554

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.63  E-value=2.1e-15  Score=142.56  Aligned_cols=163  Identities=10%  Similarity=0.049  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.|+++|+++|++++  +|+||+|+|+|+++++.++ +++|+.++ ....|+.  +...++..|++++.+|.+..++ +
T Consensus        68 ~~lr~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~-~  141 (365)
T 3get_A           68 IELKSTLAQKYKVQNE--NIIIGAGSDQVIEFAIHSK-LNSKNAFLQAGVTFAM--YEIYAKQCGAKCYKTQSITHNL-D  141 (365)
T ss_dssp             HHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH--HHHHHHHHTCEEEECSSSSCCH-H
T ss_pred             HHHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHH-hCCCCEEEEeCCChHH--HHHHHHHcCCEEEEEecCCCCC-C
Confidence            4789999999999766  7999999999999999887 57899865 3444442  3334455699999998722356 8


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-H--hCCcEEEeccccc------CcCCccCCCC----C
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-H--RNSWHVLLDATAL------VVGEDRLNLA----L  302 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r--~~g~~vlvDAaQa------~~G~~~LDLs----~  302 (344)
                      +.++|++.+++     ++++|.++..+|  |.++|++.+.++ +  ++|+++++|.+|+      . +..+.+..    .
T Consensus       142 d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~  215 (365)
T 3get_A          142 EFKKLYETHKD-----EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKD-SKKHLEPCELIKE  215 (365)
T ss_dssp             HHHHHHHHTTT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHC-GGGCCCHHHHHHH
T ss_pred             CHHHHHHHhCC-----CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccC-CcccccHhHHhcc
Confidence            89999998864     478888876666  999999877653 4  5699999999999      4 43334432    2


Q ss_pred             CCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      .+.++++.|++|+ ||.| -++|+++++++..+
T Consensus       216 ~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~  247 (365)
T 3get_A          216 FDNVLYLGTFSKL-YGLGGLRIGYGIANANIIS  247 (365)
T ss_dssp             CTTEEEEEESSST-TSCTTTCCEEEEECHHHHH
T ss_pred             CCCEEEEeecchH-hcCcchheEEEEcCHHHHH
Confidence            3678999999999 8734 24899998765543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.63  E-value=4.5e-15  Score=141.39  Aligned_cols=158  Identities=10%  Similarity=-0.004  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+++.|+++++++|++    .++||+|+|+|+++++.++.+.+|+++ ++...|+..  ...++..|++++.++.+..+
T Consensus        35 ~~~~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~--~~~~~~~G~~~~~~~~~~~~  108 (367)
T 3nyt_A           35 PEVTELEDRLADFVGAK----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVAT--AETVALLGAKPVYVDIDPRT  108 (367)
T ss_dssp             HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHH--HHHHHHcCCEEEEEecCCcc
Confidence            35788999999999984    599999999999999999877889985 466777632  22234569999999988655


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC--cEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP--DFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~--DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|... ..+|...|++.|.+ |+++|+++++|++|+. |.. .+-...+.  |++++|
T Consensus       109 ~~~d~~~l~~~i~~-----~~~~v~~~-~~~G~~~~~~~i~~la~~~~~~li~D~a~~~-g~~-~~~~~~~~~~di~~~S  180 (367)
T 3nyt_A          109 YNLDPQLLEAAITP-----RTKAIIPV-SLYGQCADFDAINAIASKYGIPVIEDAAQSF-GAS-YKGKRSCNLSTVACTS  180 (367)
T ss_dssp             CSBCGGGTGGGCCT-----TEEEECCB-CGGGCCCCHHHHHHHHHHTTCCBEEECTTTT-TCE-ETTEETTSSSSEEEEE
T ss_pred             CCcCHHHHHHhcCc-----CCcEEEee-CCccChhhHHHHHHHHHHcCCEEEEECcccc-CCe-ECCeeccCCCCEEEEE
Confidence            77899999988864     46666621 11499999987765 6999999999999998 865 33333333  999999


Q ss_pred             c--ccCCCCCCCceEEEEEe
Q 035915          312 L--DNTQNAQPSKITCLLIR  329 (344)
Q Consensus       312 ~--HK~l~G~P~GiG~L~Vr  329 (344)
                      +  ||+ +| +.|.|.+++.
T Consensus       181 f~~~K~-l~-~~g~gg~~~~  198 (367)
T 3nyt_A          181 FFPSAP-LG-CYGDGGAIFT  198 (367)
T ss_dssp             CCTTSS-SC-CSSCCEEEEE
T ss_pred             CCCCCc-CC-CcCceeEEEe
Confidence            5  899 88 4354444443

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.63  E-value=8.6e-15  Score=141.24  Aligned_cols=165  Identities=13%  Similarity=-0.021  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ....+.|+++|+++|+  +  +|+||+|+|+|+++++.++.+.+|+++ +...+|+..  ...++..|++++.+|.+. +
T Consensus        32 ~~~~~l~~~la~~~~~--~--~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~v~~~~-~  104 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKS--E--NALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS--VAPICYLKAKPVFIDCDE-T  104 (394)
T ss_dssp             HHHHHHHHHHHHHHCC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG--THHHHHTTCEEEEECBCT-T
T ss_pred             hHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH--HHHHHHcCCEEEEEEeCC-C
Confidence            3578899999999998  3  699999999999999999866789985 466777631  112233699999999874 5


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC--C-CCCcEEEE
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA--L-HRPDFVLC  310 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs--~-l~~DFvv~  310 (344)
                      +.++.++|++.+++..  .++++|.+.. .+|...|++.|.+ |+++|+++++|++|+. |....+..  . .++|++++
T Consensus       105 ~~~d~~~l~~~i~~~~--~~~~~v~~~~-~~G~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~~~~~~~s~  180 (394)
T 1o69_A          105 YNIDVDLLKLAIKECE--KKPKALILTH-LYGNAAKMDEIVEICKENDIVLIEDAAEAL-GSFYKNKALGTFGEFGVYSY  180 (394)
T ss_dssp             SSBCHHHHHHHHHHCS--SCCCEEEEEC-GGGCCCCHHHHHHHHHHTTCEEEEECTTCT-TCEETTEETTSSSSEEEEEC
T ss_pred             CCcCHHHHHHHHhccc--CCceEEEEEC-CCCChhhHHHHHHHHHHcCCEEEEECcCcc-cceeCCcccccccCcEEEEE
Confidence            7789999999887521  1367777764 3699999987765 6999999999999998 76654321  1 36899999


Q ss_pred             ccccCCCCCCCceEEEEEe-CCCc
Q 035915          311 NLDNTQNAQPSKITCLLIR-KKSF  333 (344)
Q Consensus       311 S~HK~l~G~P~GiG~L~Vr-~~~~  333 (344)
                      |.||+ ++ |.++|+++++ +++.
T Consensus       181 s~~K~-l~-~~~~G~~~~~~~~l~  202 (394)
T 1o69_A          181 NGNKI-IT-TSGGGMLIGKNKEKI  202 (394)
T ss_dssp             CTTSS-SC-CSSCEEEEESCHHHH
T ss_pred             eCCcc-CC-CCCceEEEECCHHHH
Confidence            99998 87 6689999996 4443

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.61  E-value=1.5e-14  Score=134.60  Aligned_cols=161  Identities=14%  Similarity=0.142  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ...+.|+++|+++|++++  +|+||+|+|+++++++.++   +|+.++ ....|+.  +...++..|++++.+|.++ ++
T Consensus        52 ~~~~lr~~la~~~~~~~~--~i~~t~G~~~~l~~~~~~~---~gd~vl~~~p~~~~--~~~~~~~~g~~~~~v~~~~-~~  123 (337)
T 3p1t_A           52 AEPRVMRKLAEHFSCPED--NLMLVRGIDECFDRISAEF---SSMRFVTAWPGFDG--YRARIAVSGLRHFEIGLTD-DL  123 (337)
T ss_dssp             HHHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHS---TTSEEEEESSSCSH--HHHHHTTSCCEEEEECBCT-TS
T ss_pred             chHHHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHhc---CCCeEEEeCCCcHH--HHHHHHHcCCEEEEecCCC-CC
Confidence            567899999999999876  7999999999999999988   788865 4444442  3445566799999999875 46


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCCCCCCCCcEEEEc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LDLs~l~~DFvv~S  311 (344)
                      .++.++|++..       +++++.++..+|  |.++|++.+.+ ++++++ +++|.+++-. +.....+...+.|+++.|
T Consensus       124 ~~d~~~l~~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S  195 (337)
T 3p1t_A          124 LLDPNDLAQVS-------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRS  195 (337)
T ss_dssp             SBCHHHHTTCC-------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEE
T ss_pred             CCCHHHHHhhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEee
Confidence            78988887641       367888887776  99999987765 578887 5669988721 333334444567899999


Q ss_pred             cccCCCCCC-CceEEEEEeCCCcc
Q 035915          312 LDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       312 ~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ++|+ ||.| -++|+++++++..+
T Consensus       196 ~sK~-~g~~G~r~G~~~~~~~~~~  218 (337)
T 3p1t_A          196 FSKS-YGLAGLRLGALFGPSELIA  218 (337)
T ss_dssp             SSST-TCCTTTCCEEEECCHHHHH
T ss_pred             Cchh-ccCcchheEEEEeCHHHHH
Confidence            9999 8733 24688887765443

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.61  E-value=2.9e-15  Score=143.83  Aligned_cols=164  Identities=9%  Similarity=-0.010  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |+  +++  +|+||+|+|+|+++++.++ +.+|+.++ ....|+.  +...++..|++++.+|.
T Consensus        80 ~~~lr~~la~~~~~~~g~~~~~~--~v~~~~g~t~al~~~~~~l-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~  154 (389)
T 1o4s_A           80 IYELREGIAKRIGERYKKDISPD--QVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVS--YIPQIILAGGTVNVVET  154 (389)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHH--HEEEecCHHHHHHHHHHHh-CCCCCEEEEcCCCchh--HHHHHHHcCCEEEEEec
Confidence            356777788877    76  444  7999999999999999987 67888854 5556662  22334557999999998


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc---cCCC
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED---RLNL  300 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~---~LDL  300 (344)
                      +.. +..++.++|++.+++     ++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. +..   ..++
T Consensus       155 ~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~g~~~~~  228 (389)
T 1o4s_A          155 FMSKNFQPSLEEVEGLLVG-----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS-LVYTDEFTSI  228 (389)
T ss_dssp             CGGGTTCCCHHHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-SBCSSCCCCH
T ss_pred             CCccCCCCCHHHHHHhccc-----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCH
Confidence            642 346789999988864     477888876666  99999   55554 46889999999999997 543   1232


Q ss_pred             CC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 AL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..    .+.|+++.|+||+ || +.|  +|+++++++..+
T Consensus       229 ~~~~~~~~~~i~~~s~sK~-~~-~~G~r~G~l~~~~~~~~  266 (389)
T 1o4s_A          229 LDVSEGFDRIVYINGFSKS-HS-MTGWRVGYLISSEKVAT  266 (389)
T ss_dssp             HHHCSSSTTEEEEEESTTT-TT-CGGGCCEEEECCHHHHH
T ss_pred             hhcCCCCCcEEEEeechhh-cC-CcccceEEEEeCHHHHH
Confidence            21    4689999999999 87 447  899998776543

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.61  E-value=1.5e-14  Score=137.12  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHHHHHcC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          154 ISIPEIQARNKVLKHCG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       154 as~~le~AR~~IA~~Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .....++.++.+++.+|  ++++  +|+||+|+|+|+++++.++ +.+|+.|+. ...|+.  +...++..|++++.+|.
T Consensus        64 ~~~l~~~la~~l~~~~g~~~~~~--~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~  138 (391)
T 3dzz_A           64 PAEYYKAVADWEEIEHRARPKED--WCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNM--FYSVIEGNGRRVISSDL  138 (391)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCHH--HHHHHHHTTCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHH--HEEECCCHHHHHHHHHHHh-CCCCCeEEECCCCcHH--HHHHHHHcCCEEEEeee
Confidence            34455778888888888  5554  7999999999999999988 678998664 444442  33445567999999988


Q ss_pred             CCCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCc---CCccCC
Q 035915          231 AWLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVV---GEDRLN  299 (344)
Q Consensus       231 ~~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~---G~~~LD  299 (344)
                      ++.++  .++.++|++.++.    .++++|.++..+|  |.++|.   +.|. .|+++|+++++|.+|+..   |....+
T Consensus       139 ~~~~~~~~~d~~~l~~~l~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~  214 (391)
T 3dzz_A          139 IYENSKYSVNWADLEEKLAT----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITP  214 (391)
T ss_dssp             EEETTEEECCHHHHHHHHTS----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC
T ss_pred             eecCCceeecHHHHHHHHhc----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCcee
Confidence            52222  3799999999863    1578888887766  999554   4443 368999999999999841   333445


Q ss_pred             CCCCC---Cc--EEEEccccCCCCCC-CceEEEEEe-CCC
Q 035915          300 LALHR---PD--FVLCNLDNTQNAQP-SKITCLLIR-KKS  332 (344)
Q Consensus       300 Ls~l~---~D--Fvv~S~HK~l~G~P-~GiG~L~Vr-~~~  332 (344)
                      +..+.   +|  ++++|+||+ +|.| -++|+++++ +++
T Consensus       215 ~~~~~~~~~d~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~  253 (391)
T 3dzz_A          215 AFTVDWDAKNWVVSLISPSKT-FNLAALHAACAIIPNPDL  253 (391)
T ss_dssp             GGGSCTTTGGGEEEEECSHHH-HTCTTTCCEEEECCSHHH
T ss_pred             hhhcCccccCcEEEEEeChhh-ccccchhheEEEECCHHH
Confidence            55444   67  999999999 7633 248999887 444

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.61  E-value=6.9e-15  Score=140.16  Aligned_cols=164  Identities=10%  Similarity=0.082  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCe-EEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHC----GL--PDDEYL-VLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~-VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.+++++    |.  +++  + |+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|
T Consensus        65 ~~~l~~~la~~~~~~~g~~~~~~--~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~  139 (389)
T 1gd9_A           65 LLELREAIAEKLKKQNGIEADPK--TEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVS--YAPAVILAGGKPVEVP  139 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTT--TSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTT--HHHHHHHHTCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCC--CeEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh--HHHHHHHCCCEEEEec
Confidence            356778888887    84  444  6 999999999999999988 57888854 5566663  1223344589999999


Q ss_pred             CCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc----cC
Q 035915          230 EAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED----RL  298 (344)
Q Consensus       230 ~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~----~L  298 (344)
                      .+.. +..++.++|++.+++     ++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. +..    ..
T Consensus       140 ~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~  213 (389)
T 1gd9_A          140 TYEEDEFRLNVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEH-FIYDDARHY  213 (389)
T ss_dssp             CCGGGTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCC
T ss_pred             cCCccCCCCCHHHHHHhcCc-----CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhh-cccCCCCCC
Confidence            8642 245789999998864     467887776666  99997   54454 46899999999999997 543    22


Q ss_pred             CCCC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          299 NLAL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       299 DLs~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++..    .+.|+++.|+||+ || +.|  +|+++++++..+
T Consensus       214 ~~~~~~~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  253 (389)
T 1gd9_A          214 SIASLDGMFERTITVNGFSKT-FA-MTGWRLGFVAAPSWIIE  253 (389)
T ss_dssp             CGGGSTTCGGGEEEEEESTTT-TT-CGGGCCEEEECCHHHHH
T ss_pred             CHhhccCCCCCEEEEecChhh-cC-CcccceEEEEECHHHHH
Confidence            3332    3579999999999 87 447  799998865543

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.61  E-value=1.1e-14  Score=138.63  Aligned_cols=163  Identities=11%  Similarity=0.037  Sum_probs=123.0

Q ss_pred             HHHHHHHHHH------cCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKH------CGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~------Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.++++      ++++++  +|+||+|+|+++++++.++ ..+|+.++ ....|+.  +...++..|++++.+|.+
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~--~v~~~~G~~~al~~~~~~l-~~~gd~Vl~~~~~y~~--~~~~~~~~g~~~~~v~~~  146 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRD--NLWAANGSNEILQQLLQAF-GGPGRTALGFQPSYSM--HPILAKGTHTEFIAVSRG  146 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CSTTCEEEEEESSCTH--HHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHhhhhcccCCCChH--hEEECCChHHHHHHHHHHh-cCCCCEEEEcCCChHH--HHHHHHHcCCEEEEecCC
Confidence            4688888888      566655  7999999999999999887 56788854 5556663  233445679999999976


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---CCC-CCCC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---LNL-ALHR  304 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---LDL-s~l~  304 (344)
                      . +..++.++|++.+++.    ++++|.++..+|  |.++|++.+.+ ++..++++++|.+|+. +...   +++ ...+
T Consensus       147 ~-~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~  220 (369)
T 3cq5_A          147 A-DFRIDMDVALEEIRAK----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAE-FSPSPSATTLLEKYP  220 (369)
T ss_dssp             T-TSSCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGG-GCCSCCGGGGTTTCT
T ss_pred             c-CCCCCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchh-hcCCcchHHHHhhCC
Confidence            4 3468999999988751    256777777666  99999988865 5778899999999997 6532   332 2345


Q ss_pred             -CcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          305 -PDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       305 -~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       .++++.|+||+ ||.| |  +|++++++++.+
T Consensus       221 ~~~i~~~s~sK~-~~~~-G~r~G~~~~~~~~~~  251 (369)
T 3cq5_A          221 TKLVVSRTMSKA-FDFA-GGRLGYFVANPAFID  251 (369)
T ss_dssp             TTEEEEEESSST-TSCG-GGCCEEEEECTHHHH
T ss_pred             CCEEEEEechHh-cCCc-ccceEEEEeCHHHHH
Confidence             67999999999 8745 6  799999876543

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.60  E-value=2e-14  Score=144.16  Aligned_cols=154  Identities=14%  Similarity=0.011  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++.+++++|++    +++|++|+|+|+++++. + +++||+|+ ....|+.  ..+..+++..|++++.+|.+
T Consensus       132 ~~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~  205 (464)
T 1ibj_A          132 NPTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT  205 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred             CHHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence            345688999999999974    57888888999998876 3 57899865 4555552  23344456679999998864


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc--cCCCCCCCCc
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED--RLNLALHRPD  306 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~--~LDLs~l~~D  306 (344)
                            +.++|++.+++     ++++|.+...+|  |.++|++.|.+ |+++|+++++|.+|+. |..  +++   +++|
T Consensus       206 ------d~~~l~~~i~~-----~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~-g~~~~~~~---~~~d  270 (464)
T 1ibj_A          206 ------KLDEVAAAIGP-----QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS-PVLSRPLE---LGAD  270 (464)
T ss_dssp             ------SHHHHHHHCCS-----SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTC-TTTCCGGG---TTCS
T ss_pred             ------CHHHHHHHhcc-----CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcc-cccCChhh---cCCE
Confidence                  56788888864     488999988877  99999988865 6999999999999998 865  444   5799


Q ss_pred             EEEEccccCCCCCCCce--EEEEEeC
Q 035915          307 FVLCNLDNTQNAQPSKI--TCLLIRK  330 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~Gi--G~L~Vr~  330 (344)
                      ++++|+||+ |++|.|+  |++++++
T Consensus       271 iv~~S~sK~-~~g~~Gl~~G~l~~~~  295 (464)
T 1ibj_A          271 IVMHSATKF-IAGHSDVMAGVLAVKG  295 (464)
T ss_dssp             EEEEETTTT-TTCSSCCCCEEEEECS
T ss_pred             EEEECCccc-ccCCCCCcEEEEEECh
Confidence            999999999 8878887  9999986

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.60  E-value=6.9e-15  Score=139.50  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.++++++      ++++  +|+||+|+|+|+++++.++ +.+|+.++ ....|+.  +...++..|++++.+| 
T Consensus        68 ~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~v~-  141 (370)
T 2z61_A           68 ILELREKISELYKDKYKADIIPD--NIIITGGSSLGLFFALSSI-IDDGDEVLIQNPCYPC--YKNFIRFLGAKPVFCD-  141 (370)
T ss_dssp             CHHHHHHHHHHHHHHSSCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCTH--HHHHHHHTTCEEEEEC-
T ss_pred             CHHHHHHHHHHHHHHhCCCCChh--hEEECCChHHHHHHHHHHh-cCCCCEEEEeCCCchh--HHHHHHHcCCEEEEeC-
Confidence            3567788888875      5554  7999999999999999987 57888854 5566663  2233455799998887 


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc---cCCCCC--
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED---RLNLAL--  302 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~---~LDLs~--  302 (344)
                            ++.++|++.+++     ++++|.++..+|  |.++|++ |.+ |+++|+++++|.+|+. +..   +.++..  
T Consensus       142 ------~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~  208 (370)
T 2z61_A          142 ------FTVESLEEALSD-----KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNG-LVYEGKCYSAIEFD  208 (370)
T ss_dssp             ------SSHHHHHHHCCS-----SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTT-CBSSSCCCCGGGTC
T ss_pred             ------CCHHHHHHhccc-----CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhh-cccCCCCcCHHHcc
Confidence                  467888888864     467787776666  9999999 754 6899999999999997 543   334332  


Q ss_pred             --CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 --HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                        .+.|+++.|+||+ || +.|  +|++++++++.+
T Consensus       209 ~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  242 (370)
T 2z61_A          209 ENLEKTILINGFSKL-YA-MTGWRIGYVISNDEIIE  242 (370)
T ss_dssp             TTCSSEEEEEESTTT-TT-CGGGCCEEEECCHHHHH
T ss_pred             CCCCcEEEEecChhc-cC-CccceEEEEEECHHHHH
Confidence              3679999999999 87 448  999998875543

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.60  E-value=5e-15  Score=141.82  Aligned_cols=159  Identities=14%  Similarity=0.009  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHH-HHcCCcEEEEEeCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREF-ASFKESKVILAPEAW  232 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~l-a~~~G~kV~~vp~~~  232 (344)
                      ..+.+|+.+++++|++++  +|+||+| |+|+.+++.++ +++||.++ ....|+.  .....+ ....++.+..++.+ 
T Consensus        72 ~~~~~~~~la~~~g~~~~--~i~~~sG-t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  146 (417)
T 3n0l_A           72 IETLAIERCKKLFNCKFA--NVQPNSG-SQANQGVYAAL-INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-  146 (417)
T ss_dssp             HHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH-SCTTCEEEEECC----------------CCSEEEEECCC-
T ss_pred             HHHHHHHHHHHHhCCCCc--ceEeccH-HHHHHHHHHHh-cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC-
Confidence            345789999999999754  5777777 89999999888 68899864 5555652  111111 11235566667776 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc-----cCCCCCCCCc
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED-----RLNLALHRPD  306 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-----~LDLs~l~~D  306 (344)
                      .++.++.++|++.++..    ++++|.+...+||++.|++.|.+ |+++|+++++|.+|+. |..     +.++.  .+|
T Consensus       147 ~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~~--~~d  219 (417)
T 3n0l_A          147 LDGRIDYEKVREIAKKE----KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIA-GLVVAGEHPSPFP--YAH  219 (417)
T ss_dssp             TTSSCCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHTTSSCCCTT--TCS
T ss_pred             CCCCcCHHHHHHHHHhc----CCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccch-hhhhcccCCCccc--cce
Confidence            45778999999999732    36777776656799999987765 6999999999999976 654     33333  579


Q ss_pred             EEEEccccCCCCCCCceEEEEEe
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      ++++|+||+ |++|.| |+++.+
T Consensus       220 i~~~s~sK~-l~g~~~-G~~~~~  240 (417)
T 3n0l_A          220 VVSSTTHKT-LRGPRG-GIIMTN  240 (417)
T ss_dssp             EEEEESSTT-TCSCSC-EEEEES
T ss_pred             EEEeeCccc-cCCCCe-eEEEEC
Confidence            999999999 777875 888887

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.60  E-value=3.8e-14  Score=135.85  Aligned_cols=159  Identities=11%  Similarity=0.013  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC------CCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY------PFFRGNFY-MTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl------~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ....++.|+++++++|++    +++||+|+|+|+++++.++      .+.+|++| ++..+|+..  ...++..|++++.
T Consensus        33 ~~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~--~~~~~~~g~~~~~  106 (390)
T 3b8x_A           33 GEYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTT--YYPLQQYGLRVKF  106 (390)
T ss_dssp             CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHH--HHHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHH--HHHHHHcCCEEEE
Confidence            346788999999999984    4899999999999999988      46788885 467777732  1223457999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC-
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP-  305 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~-  305 (344)
                      +|.+..++.++.++|++.+++     ++++|.++. ..|...|++.|.+ |+++|+++++|++|+. |... +...+++ 
T Consensus       107 ~~~~~~~~~~d~~~l~~~i~~-----~~~~v~~~~-~~g~~~~~~~i~~l~~~~~~~li~D~a~~~-g~~~-~~~~~g~~  178 (390)
T 3b8x_A          107 VDIDINTLNIDIESLKEAVTD-----STKAILTVN-LLGNPNNFDEINKIIGGRDIILLEDNCESM-GATF-NNKCAGTF  178 (390)
T ss_dssp             ECBCTTTCSBCHHHHHHHCCT-----TEEEEEEEC-GGGCCCCHHHHHHHHTTSCCEEEEECTTCT-TCEE-TTEETTSS
T ss_pred             EecCccccCcCHHHHHHHhCc-----CCeEEEEEC-CccChhhHHHHHHHHHHcCCEEEEECcCcc-cCEE-CCcccccc
Confidence            998764477899999998864     478888762 2499999988865 6899999999999999 8776 5554444 


Q ss_pred             -cEEEEc---cccCCCCCCCceEEEEEeC
Q 035915          306 -DFVLCN---LDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       306 -DFvv~S---~HK~l~G~P~GiG~L~Vr~  330 (344)
                       |+.++|   +||+ .+ |.| |+++.++
T Consensus       179 ~~~~~~s~~~~k~~-~~-g~g-G~~~~~~  204 (390)
T 3b8x_A          179 GLMGTFSSFYSNHI-AT-MEG-GCIVTDD  204 (390)
T ss_dssp             SSEEEEECCTTSSS-CS-SSC-EEEEESC
T ss_pred             cceEEEEccCCCCC-cc-CCc-eEEEeCC
Confidence             777755   5775 44 666 8888876

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.60  E-value=2.4e-15  Score=152.67  Aligned_cols=171  Identities=13%  Similarity=0.000  Sum_probs=113.1

Q ss_pred             hhhhhHHH-HHHHHHHHHHcCCCCCCC-eEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH---HHH-HH--HHHcC
Q 035915          151 GSFISIPE-IQARNKVLKHCGLPDDEY-LVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL---DYV-RE--FASFK  221 (344)
Q Consensus       151 g~~as~~l-e~AR~~IA~~Lga~p~ey-~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~---~~i-r~--la~~~  221 (344)
                      |......+ +.||+++++++|++.+++ ..||++++|+|++.+..++ +++||+|+ ....|..   ... ..  .+...
T Consensus        94 G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al-~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~  172 (490)
T 2a7v_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT  172 (490)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-CCSCEECCC-----------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH-cCCCCEecccCccccccccchhhhcchhHHHc
Confidence            44333344 589999999999986544 3578888999999998888 67999965 4555531   111 00  11122


Q ss_pred             CcEE--EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc--
Q 035915          222 ESKV--ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED--  296 (344)
Q Consensus       222 G~kV--~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~--  296 (344)
                      |..+  ..++++..++.+|.++|++.+...    +++++.+...+||+..|++.|.+ |+++|+++++|++|+. |..  
T Consensus       173 g~~~~~~~~~vd~~~~~iD~d~le~~l~~~----~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~-glv~~  247 (490)
T 2a7v_A          173 SIFFESMPYKLNPKTGLIDYNQLALTARLF----RPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHIS-GLVAA  247 (490)
T ss_dssp             --------CCBCTTTCSBCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGH-HHHHT
T ss_pred             CCeEEEEecccccccCCcCHHHHHHHHhhc----CCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEcccccc-ccccC
Confidence            4333  334445446789999999998642    35777776555799999988865 6999999999999986 532  


Q ss_pred             ---cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          297 ---RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       297 ---~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                         +..+.  ++|++++|+||. |++|.| |+++.+++
T Consensus       248 g~~~~~~~--~aDiv~~S~hK~-l~Gp~G-G~i~~~~~  281 (490)
T 2a7v_A          248 KVIPSPFK--HADIVTTTTHKT-LRGARS-GLIFYRKG  281 (490)
T ss_dssp             TSSCCGGG--TCSEEEEESSGG-GCSCSC-EEEEEECS
T ss_pred             CcCCCCCC--CCCEEEECCccc-Cccccc-hheeeccc
Confidence               22332  689999999999 777987 99998876

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.59  E-value=4.5e-14  Score=139.35  Aligned_cols=180  Identities=11%  Similarity=0.003  Sum_probs=133.3

Q ss_pred             hHHHHHHhhccC-CC-ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC-
Q 035915          135 EPSRLLDILTKK-SS-FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE-  210 (344)
Q Consensus       135 ~~~~L~~~L~gn-ss-~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~-  210 (344)
                      ..+.+.+.+.+. .. ..++......++.++++++++|++    .++||+|+++|+.+++.++ +++||+|+ ....|+ 
T Consensus        58 ~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~  132 (414)
T 3ndn_A           58 SAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARSLFGS  132 (414)
T ss_dssp             SHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESCCCHH
T ss_pred             ChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCccch
Confidence            344444443333 22 234455557789999999999973    5899999999999988887 67899865 455555 


Q ss_pred             -HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEe
Q 035915          211 -LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLL  286 (344)
Q Consensus       211 -~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlv  286 (344)
                       ...++.+++..|++++.+|.+      +.++|++++++     ++++|.+...+|  |.+.|++.|.+ |+++|+++++
T Consensus       133 ~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~ai~~-----~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~liv  201 (414)
T 3ndn_A          133 CFVVCSEILPRWGVQTVFVDGD------DLSQWERALSV-----PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVL  201 (414)
T ss_dssp             HHHHHHTHHHHTTCEEEEECTT------CHHHHHHHTSS-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHcCcEEEEeCCC------CHHHHHHhcCC-----CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEE
Confidence             233444456689999999875      56789888865     467888877766  99999988865 6999999999


Q ss_pred             cccccCcCCccCCCCCCCCcEEEEccccCCCCCCCc---eEEEEEeCCCcc
Q 035915          287 DATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSK---ITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~G---iG~L~Vr~~~~~  334 (344)
                      |.+|+. |.....+ .+++|+++.|++|+ ||++ |   .|+++.+++...
T Consensus       202 De~~~~-~~~~~~~-~~g~div~~S~sK~-l~~~-G~~~~G~vv~~~~~~~  248 (414)
T 3ndn_A          202 DNVFAT-PLLQQGF-PLGVDVVVYSGTKH-IDGQ-GRVLGGAILGDREYID  248 (414)
T ss_dssp             ECTTTH-HHHCCCG-GGTCSEEEEETTTT-TTCS-SCCCCEEEEECHHHHT
T ss_pred             ECCCcc-cccCCch-hcCCCeEeccCCcc-ccCC-CCceEEEEEECHHHHH
Confidence            999998 7543333 46799999999999 8844 6   799888765443

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.59  E-value=2.5e-14  Score=136.17  Aligned_cols=158  Identities=7%  Similarity=-0.017  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ....+.|+.+++++|++    +++||+|+|+|+++++.++.+.+|++|+ ...+|+.  ....++..|++++.+|.+..+
T Consensus        39 ~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  112 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS--TLNMIVLLGANPVMVDVDRDT  112 (393)
T ss_dssp             HHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH--HHHHHHHTTCEEEEECBCTTT
T ss_pred             hHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHh--HHHHHHHCCCEEEEEeccCCc
Confidence            45688999999999984    5999999999999999998677899854 5666653  223345679999999987544


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC-CcEEEEcc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR-PDFVLCNL  312 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~-~DFvv~S~  312 (344)
                      +.++.++|++.+++     ++++|.+.. .+|.+.|++.|.+ |+++|+++++|++|+. |... +...++ +|++++|+
T Consensus       113 ~~~d~~~l~~~l~~-----~~~~v~~~~-~~G~~~~~~~i~~l~~~~~~~li~D~a~~~-g~~~-~~~~~~~~d~~~~S~  184 (393)
T 1mdo_A          113 LMVTPEHIEAAITP-----QTKAIIPVH-YAGAPADLDAIYALGERYGIPVIEDAAHAT-GTSY-KGRHIGARGTAIFSF  184 (393)
T ss_dssp             CCBCHHHHHHHCCT-----TEEEECCBC-GGGCCCCHHHHHHHHHHHTCCBCEECTTCT-TCEE-TTEETTSSSEEEEEC
T ss_pred             CCCCHHHHHHhcCC-----CceEEEEeC-CCCCcCCHHHHHHHHHHcCCeEEEECcccc-CCeE-CCeecCCCCeEEEeC
Confidence            67899999998864     467777653 2599999987765 6899999999999998 7543 223345 89999999


Q ss_pred             c--cCCCCCCCceEEEEEe
Q 035915          313 D--NTQNAQPSKITCLLIR  329 (344)
Q Consensus       313 H--K~l~G~P~GiG~L~Vr  329 (344)
                      |  |+ ++++ ..|+++.+
T Consensus       185 ~k~K~-l~~~-~~g~~~~~  201 (393)
T 1mdo_A          185 HAIKN-ITCA-EGGIVVTD  201 (393)
T ss_dssp             CTTSS-SCSS-SCEEEEES
T ss_pred             CCCCc-cccc-cceEEEeC
Confidence            9  99 7644 46677665

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.58  E-value=2.9e-15  Score=148.65  Aligned_cols=161  Identities=12%  Similarity=0.029  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC--CCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE--AWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~--~~~  233 (344)
                      .+.++|+.+|+ +|++ +  .++||+|+|+|+++++.++ +++|+.++ ....|+..  ...+...|+++++++.  +..
T Consensus        58 ~~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~~h~s~--~~~~~~~G~~~~~v~~~~~~~  130 (446)
T 2x3l_A           58 VILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSF-SQKKGDILMARNVHKSV--LHALDISQQEGHFIETHQSPL  130 (446)
T ss_dssp             HHHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTT-TTSSSCEEECTTCCHHH--HHHHHHHTCCEEECEEEECTT
T ss_pred             HHHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCccHHH--HHHHHHcCCeEEEEeCeeccc
Confidence            56889999999 9986 3  7999999999999999987 57888865 55556632  1112234888888876  421


Q ss_pred             C---CccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCc----cCCCCCCC
Q 035915          234 D---LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGED----RLNLALHR  304 (344)
Q Consensus       234 ~---g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~----~LDLs~l~  304 (344)
                      .   +.++.+.|   +.+     ++++|.++..++ |.+.|++.|.+ |+++|+++++|++|+. ...    ++++..++
T Consensus       131 ~~~~~~~d~~~l---~~~-----~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g  201 (446)
T 2x3l_A          131 TNHYNKVNLSRL---NND-----GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQ  201 (446)
T ss_dssp             TSSEEEEEC---------------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGT
T ss_pred             cCcCCCCCHHHH---cCC-----CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcC
Confidence            0   34666666   232     467888877544 99999987764 7999999999999985 210    55666678


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|++++|+||+ +++|.|+|+|+++++..+
T Consensus       202 ~Di~~~S~~K~-l~~~~g~g~l~~~~~~i~  230 (446)
T 2x3l_A          202 ADYVVQSFHKT-LPALTMGSVLYIHKNAPY  230 (446)
T ss_dssp             CSEEEECHHHH-SSSCTTCEEEEEETTCTT
T ss_pred             CCEEEECCccc-cccccccEEEEEcCCcCC
Confidence            99999999998 555889999999988754

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.58  E-value=1.5e-15  Score=144.85  Aligned_cols=165  Identities=14%  Similarity=0.040  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHH--HHHHcCCcEEEEEeCCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVR--EFASFKESKVILAPEAW  232 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir--~la~~~G~kV~~vp~~~  232 (344)
                      .+.+|+.+++++|+++   ..+|+.++|+|+++++.++ +.+|+.++ ....|+.  ..+.  .+.. .+.++..++.+.
T Consensus        71 ~~~~r~~la~~~g~~~---~~i~~~sGt~a~~~a~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  145 (405)
T 2vi8_A           71 EELARERAKQLFGAEH---ANVQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDP  145 (405)
T ss_dssp             HHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCT
T ss_pred             HHHHHHHHHHHhCCCc---eEEEecCcHHHHHHHHHHh-cCCCCEEEEecccccchhcccchhhhcc-ceeEEEeccccc
Confidence            3569999999999974   3555444599999999888 67899854 5555652  1110  1111 124666777642


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC---CCcEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH---RPDFV  308 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l---~~DFv  308 (344)
                      .++.++.++|++.+++.    ++++|.++..++|...|++.|.+ |+++|+++++|++|+. |..+.+....   .+|++
T Consensus       146 ~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~~~~di~  220 (405)
T 2vi8_A          146 ETHVIDYDDVREKARLH----RPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIA-GLVAAGLHPNPVPYAHFV  220 (405)
T ss_dssp             TTCSBCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHTTSSCCSTTTCSEE
T ss_pred             ccCCcCHHHHHHHHHhc----CCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccc-cccccCcCCCccccCCEE
Confidence            34678999999998752    35677764333598889987765 6899999999999997 7544443322   68999


Q ss_pred             EEccccCCCCCCCceEEEEEeCCCcc
Q 035915          309 LCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++|+||+ |++|.| |++++++++.+
T Consensus       221 ~~s~sK~-~~g~~g-G~~~~~~~~~~  244 (405)
T 2vi8_A          221 TTTTHKT-LRGPRG-GMILCQEQFAK  244 (405)
T ss_dssp             EEESSST-TCCCSC-EEEEECHHHHH
T ss_pred             EEecccc-CCCCCC-eEEEEcHHHHH
Confidence            9999999 877889 99999865543

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.57  E-value=6.5e-14  Score=133.34  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          159 IQARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       159 e~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .+.|+.+++++    |++.+..+|+||+|+|+|+++++.++ +.+|+.++ ....|+.  +...++..|++++.+|.+..
T Consensus        70 ~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  146 (388)
T 1j32_A           70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVS--YPEMVKLAEGTPVILPTTVE  146 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH--HHHHHHHTTCEEEEECCCGG
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCChh--HHHHHHHcCCEEEEecCCcc
Confidence            44555666655    54322227999999999999999988 67898854 5556663  23344567999999988642


Q ss_pred             -CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc----cCCCCC
Q 035915          234 -DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED----RLNLAL  302 (344)
Q Consensus       234 -~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~----~LDLs~  302 (344)
                       +..++.++|++.+++     ++++|.+...+|  |.++|   ++.|. .|+++|+++++|.+++. ...    ..++..
T Consensus       147 ~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~  220 (388)
T 1j32_A          147 TQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK-ILYDDAQHLSIGA  220 (388)
T ss_dssp             GTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGG
T ss_pred             cCCCCCHHHHHHhcCc-----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCCHHH
Confidence             345789999998864     477888777666  99987   44454 46889999999999986 321    112222


Q ss_pred             -----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 -----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 -----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                           .+.|+++.|+||+ || +.|  +|++++++++.+
T Consensus       221 ~~~~~~~~~~~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  257 (388)
T 1j32_A          221 ASPEAYERSVVCSGFAKT-YA-MTGWRVGFLAGPVPLVK  257 (388)
T ss_dssp             SCHHHHHTEEEEEESTTT-TT-CTTTCCEEEECCHHHHH
T ss_pred             ccccccCCEEEEeechhc-cC-CcccceEEEEeCHHHHH
Confidence                 3579999999999 87 458  999998876543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.57  E-value=6.5e-14  Score=135.08  Aligned_cols=159  Identities=9%  Similarity=-0.058  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ....+.|+++++++|++    +++|++|+|+|+++++.++.+.+|+.++ ....|+.  ....++..|++++.+|.+..+
T Consensus        63 ~~~~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~  136 (399)
T 2oga_A           63 PELEGFEAEFAAYCETD----HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIA--SWLAVSATGATPVPVEPHEDH  136 (399)
T ss_dssp             HHHHHHHHHHHHHTTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH--HHHHHHHTTCEEEEECBCSSS
T ss_pred             hhHHHHHHHHHHHHCCC----eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHH--HHHHHHHCCCEEEEEecCCCC
Confidence            45688999999999984    4899999999999999998677898854 5566663  223345579999999987544


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC--CcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR--PDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|.+. ..+|.+.|++.|.+ |+++|+++++|++|+. |.. .+...++  +|++++|
T Consensus       137 ~~~d~~~l~~~i~~-----~~~~v~~~-n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~-~~~~~~~~~~di~~~S  208 (399)
T 2oga_A          137 PTLDPLLVEKAITP-----RTRALLPV-HLYGHPADMDALRELADRHGLHIVEDAAQAH-GAR-YRGRRIGAGSSVAAFS  208 (399)
T ss_dssp             SSBCHHHHHHHCCT-----TEEEECCB-CGGGCCCCHHHHHHHHHHHTCEECEECTTCT-TCE-ETTEETTCTTCEEEEE
T ss_pred             CCcCHHHHHHhcCC-----CCeEEEEe-CCcCCccCHHHHHHHHHHcCCEEEEECcccc-cCc-cCCeecccccCEEEEe
Confidence            67899999998864     36776632 11499999987765 6899999999999998 854 2443334  7999999


Q ss_pred             cc--cCCCCCCCceEEEEEe
Q 035915          312 LD--NTQNAQPSKITCLLIR  329 (344)
Q Consensus       312 ~H--K~l~G~P~GiG~L~Vr  329 (344)
                      +|  |+ ||.|...|+++.+
T Consensus       209 ~~~sK~-~~~~G~~g~~~~~  227 (399)
T 2oga_A          209 FYPGKN-LGCFGDGGAVVTG  227 (399)
T ss_dssp             CCTTSS-SCCSSCCEEEEES
T ss_pred             CCCCcc-CCcCCceEEEEeC
Confidence            96  99 8843235566554

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.57  E-value=7.3e-15  Score=142.10  Aligned_cols=165  Identities=11%  Similarity=-0.027  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCC--eEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          159 IQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYP-FFRGN--FYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       159 e~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd--~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ++.|+.++++++      ++++  +|+||+|+|+|+++++.++. +.+|+  .|+ ....|+.  +...++..|++++.+
T Consensus        85 ~~lr~~la~~~~~~~g~~~~~~--~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~--~~~~~~~~g~~~~~v  160 (437)
T 3g0t_A           85 PELKQEASRFAKLFVNIDIPAR--ACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNL--NKLQCRILGQKFESF  160 (437)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHH--HHHHHHHHTCCCEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCCcc--cEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHh--HHHHHHHcCCEEEEE
Confidence            567888888887      5555  79999999999999998873 26888  754 4444442  333445568999999


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCC----cc-
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGE----DR-  297 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~----~~-  297 (344)
                      |.+..+..++.++|++.+..    .++++|.++..+|  |.++|.+.   |. .|+++|+++++|.+|+. ..    .+ 
T Consensus       161 ~~~~~~~~~d~~~l~~~l~~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~  235 (437)
T 3g0t_A          161 DLFEYRGEKLREKLESYLQT----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFG-MDFRKDYSH  235 (437)
T ss_dssp             EGGGGCTTHHHHHHHHHHTT----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CCTTSCCCS
T ss_pred             eecCCCCccCHHHHHHHHhc----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhh-cccCCCcCc
Confidence            98643345788999998832    1467787766666  99999644   33 36889999999999974 22    12 


Q ss_pred             -------CCCCC-CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          298 -------LNLAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       298 -------LDLs~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                             .++.. .+.++++.|++|+ || +.|  +|+++++++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  280 (437)
T 3g0t_A          236 PGEPLYQPSVANYTDNYILALSSSKA-FS-YAGQRIGVLMISGKLYE  280 (437)
T ss_dssp             TTSSCCCCCGGGTCSCEEEEEESTTT-TS-CGGGCCEEEEECHHHHH
T ss_pred             ccccchhhccCCCCCcEEEEEcCccC-CC-CccceeEEEEECHHHhh
Confidence                   23333 5678999999999 87 336  899999876544

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.57  E-value=3.7e-14  Score=135.77  Aligned_cols=162  Identities=12%  Similarity=0.047  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.++.+++++|+  +  +|+||+|+|+|+++++.++ +.+|+.++ ....|..  ....++..|++++.+|.   
T Consensus        87 ~~~~~~l~~~la~~~g~--~--~v~~~~ggt~a~~~~~~~~-~~~gd~V~~~~p~~~~--~~~~~~~~g~~~~~v~~---  156 (398)
T 3a2b_A           87 LDIHVELEEKLSAYVGK--E--AAILFSTGFQSNLGPLSCL-MGRNDYILLDERDHAS--IIDGSRLSFSKVIKYGH---  156 (398)
T ss_dssp             CHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHS-SCTTCEEEEETTCCHH--HHHHHHHSSSEEEEECT---
T ss_pred             cHHHHHHHHHHHHHhCC--C--cEEEECCHHHHHHHHHHHH-hCCCCEEEECCccCHH--HHHHHHHcCCceEEeCC---
Confidence            35678899999999997  3  6999999999999999988 57899865 4555542  22334557999988875   


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc---cCCCCC-----
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED---RLNLAL-----  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~---~LDLs~-----  302 (344)
                         ++.++|++.+++.. ..++++|.++..+|  |.++|++.|.+ |+++|+++++|.+|+. +..   ..++..     
T Consensus       157 ---~d~~~l~~~l~~~~-~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  231 (398)
T 3a2b_A          157 ---NNMEDLRAKLSRLP-EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSL-GVIGHKGAGTASHFGLN  231 (398)
T ss_dssp             ---TCHHHHHHHHHTSC-SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTT-TTSSGGGCCHHHHHTCG
T ss_pred             ---CCHHHHHHHHHhhc-cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcc-cccCCCCCchHhhcCCC
Confidence               36788988886521 11467888887776  99999987764 6899999999999987 632   223211     


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .++|+++.|+||+ || |.| |++++++++.+
T Consensus       232 ~~~di~~~s~sK~-~~-~~G-G~~~~~~~~~~  260 (398)
T 3a2b_A          232 DDVDLIMGTFSKS-LA-SLG-GFVAGDADVID  260 (398)
T ss_dssp             GGCSEEEEESSST-TC-SSC-EEEEECHHHHH
T ss_pred             cCCeEEEeccccc-cc-CCC-cEEEeCHHHHH
Confidence            1379999999999 88 878 99999876543

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.57  E-value=1e-13  Score=132.64  Aligned_cols=159  Identities=13%  Similarity=0.059  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ....+.|+.+++++|++    .++||+|+|+|+++++.++.+.+|+.+ +...+|+..  ...++..|++++.+|.+..+
T Consensus        56 ~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~  129 (391)
T 3dr4_A           56 RFIVEFEKAFADYCGVK----HAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIAS--ANSVTYCGATPVLVDNDPRT  129 (391)
T ss_dssp             HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHH--HHHHHHCCCEEEEEecCccc
Confidence            45788999999999985    589999999999999998877889985 466777732  22344569999999987545


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCC--CCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNL--ALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL--s~l~~DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|.+. ..+|.+.|++.|.+ |+++|+++++|++|+. |....+.  ..+ .|+.++|
T Consensus       130 ~~~d~~~l~~~~~~-----~~~~v~~~-n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~-g~~~~~~~~~~~-~di~~~S  201 (391)
T 3dr4_A          130 FNLDAAKLEALITP-----RTKAIMPV-HLYGQICDMDPILEVARRHNLLVIEDAAEAV-GATYRGKKSGSL-GDCATFS  201 (391)
T ss_dssp             CSBCGGGSGGGCCT-----TEEEECCB-CGGGCCCCHHHHHHHHHHTTCEEEEECTTCT-TCEETTEETTSS-SSEEEEE
T ss_pred             cCcCHHHHHHhcCC-----CceEEEEE-CCCCChhhHHHHHHHHHHcCCEEEEECcccc-cceECCeeeccc-CCEEEEE
Confidence            67899989888864     46766632 12499999987765 6999999999999998 8765543  222 3555555


Q ss_pred             --cccCCCCCCCceEEEEEeC
Q 035915          312 --LDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       312 --~HK~l~G~P~GiG~L~Vr~  330 (344)
                        .||+ ++++ ..|+++.++
T Consensus       202 ~s~~K~-l~~g-~gg~~~~~~  220 (391)
T 3dr4_A          202 FFGNAI-ITTG-EGGMITTND  220 (391)
T ss_dssp             CBTTSS-SCCB-SCEEEEESC
T ss_pred             CCCCCc-CCcC-CeEEEEECC
Confidence              7799 7643 345555554

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.57  E-value=3.8e-14  Score=135.10  Aligned_cols=166  Identities=9%  Similarity=0.026  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHc----CCCCCCC-eEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          159 IQARNKVLKHC----GLPDDEY-LVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       159 e~AR~~IA~~L----ga~p~ey-~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .+.|+.+++++    |++.+.. +|+||+|+|+|+++++.++ ..+|+.|+ ....|+.  +...++..|++++.+|.+.
T Consensus        70 ~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~v~~~~  146 (386)
T 1u08_A           70 QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-VRNGDEVICFDPSYDS--YAPAIALSGGIVKRMALQP  146 (386)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-CCCCCEEEEeCCCchh--HHHHHHHcCCEEEEeecCc
Confidence            45666677664    7532222 5999999999999999987 56788854 5556662  2234455799999999865


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCc---CCccCCCC--
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVV---GEDRLNLA--  301 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~---G~~~LDLs--  301 (344)
                      .+..++.++|++.+++     ++++|.+...+|  |.++|.+   .|. .|+++|+++++|.+|+..   |.....+.  
T Consensus       147 ~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  221 (386)
T 1u08_A          147 PHFRVDWQEFAALLSE-----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH  221 (386)
T ss_dssp             TTCCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGS
T ss_pred             ccCcCCHHHHHHhhcc-----cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcc
Confidence            3456899999998864     478888876666  9999864   443 357899999999999851   11112232  


Q ss_pred             --CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          302 --LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       302 --~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                        ..+.|+++.|+||+ || +.|  +|++++++++.+
T Consensus       222 ~~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  256 (386)
T 1u08_A          222 PQLRERAVAVSSFGKT-YH-MTGWKVGYCVAPAPISA  256 (386)
T ss_dssp             HHHHTTEEEEEEHHHH-TT-CGGGCCEEEECCHHHHH
T ss_pred             cCccCcEEEEecchhh-cC-CcccceEEEEcCHHHHH
Confidence              24689999999999 88 448  899998876543

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.56  E-value=8.9e-14  Score=133.24  Aligned_cols=163  Identities=10%  Similarity=-0.008  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |+  +++  +|+||+|+|+|+++++.++ +.+||.| +....|+.  +...++..|++++.+|.
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~  144 (385)
T 1b5p_A           70 IPELREALAEKFRRENGLSVTPE--ETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVS--YPEMVRFAGGVVVEVET  144 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCChH--HEEEcCChHHHHHHHHHHh-cCCCCEEEEcCCCchh--HHHHHHHcCCEEEEeec
Confidence            355777777776    43  444  7999999999999999988 6789985 45556652  33445567999999998


Q ss_pred             CC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcCCc---cCCC
Q 035915          231 AW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGED---RLNL  300 (344)
Q Consensus       231 ~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~~---~LDL  300 (344)
                      +. .+..++.++|++.+++     ++++|.++..+|  |.++|.   +.|. .++++|+++++|.+++- ...   ..++
T Consensus       145 ~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~  218 (385)
T 1b5p_A          145 LPEEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH-LLYEGEHFSP  218 (385)
T ss_dssp             CGGGTTCCCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCG
T ss_pred             CcccCCCCCHHHHHHhcCC-----CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCCH
Confidence            64 2346789999888764     477888876666  999884   4443 35889999999999886 322   1233


Q ss_pred             CCC--CCcEEEEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          301 ALH--RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       301 s~l--~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      ..+  +.++++.|++|+ ||.| |  +|+++++++..
T Consensus       219 ~~~~~~~~i~~~s~SK~-~~~~-G~RiG~~~~~~~~~  253 (385)
T 1b5p_A          219 GRVAPEHTLTVNGAAKA-FAMT-GWRIGYACGPKEVI  253 (385)
T ss_dssp             GGTCTTTEEEEEESTTT-TTCG-GGCCEEEECCHHHH
T ss_pred             HHcCCCCEEEEEechhh-cCCc-ccceEEEEeCHHHH
Confidence            333  568999999999 8844 8  99999876543

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.56  E-value=1.3e-13  Score=131.63  Aligned_cols=165  Identities=13%  Similarity=0.150  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          159 IQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+.|+.+++++    |  ++++  +|+||+|+|+|+++++.++ +.+| +.|+ ....|+.  +...++..|++++.+|.
T Consensus        79 ~~lr~~la~~l~~~~g~~~~~~--~i~~~~g~~~al~~~~~~l-~~~g~d~vl~~~p~~~~--~~~~~~~~g~~~~~v~~  153 (398)
T 3ele_A           79 VETRAAIAEFLNNTHGTHFNAD--NLYMTMGAAASLSICFRAL-TSDAYDEFITIAPYFPE--YKVFVNAAGARLVEVPA  153 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCSTTCEEEEESSCCTH--HHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCChH--HEEEccCHHHHHHHHHHHH-cCCCCCEEEEeCCCchh--hHHHHHHcCCEEEEEec
Confidence            44666666665    4  5555  7999999999999999988 5789 8865 4444542  33445567999999998


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHh------CCcEEEecccccCc---C-
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHR------NSWHVLLDATALVV---G-  294 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~------~g~~vlvDAaQa~~---G-  294 (344)
                      +..+..++.++|++.+++     ++++|.++..+|  |.++|.+.+.    .|++      +|+++++|.+|+..   | 
T Consensus       154 ~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~  228 (398)
T 3ele_A          154 DTEHFQIDFDALEERINA-----HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI  228 (398)
T ss_dssp             CTTTSSCCHHHHHHTCCT-----TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC
T ss_pred             CCcCCcCCHHHHHHHhCc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC
Confidence            764557899999998864     478888876666  9999975443    3566      89999999999851   1 


Q ss_pred             CccCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          295 EDRLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       295 ~~~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ..+......+.++++.|++|+ ||.| .++|+++++++..+
T Consensus       229 ~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~  268 (398)
T 3ele_A          229 KVPFVTKYYDNTLVCYSYSKS-LSLPGERIGYVLVPDEVYD  268 (398)
T ss_dssp             CCCCGGGTCSSEEEEEESTTT-SSCTTTCCEEEECCTTSTT
T ss_pred             CcCChHhhcCCeEEEEehhhc-CCCccceeEEEEEcchhhh
Confidence            123333445678999999999 8734 24899999887543

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.56  E-value=2.4e-14  Score=141.85  Aligned_cols=166  Identities=7%  Similarity=-0.129  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEE--eCCHHHHHHHHHhhCCCCCCCeEEEcC--CcC-HH-HHH------HHHHcCCcEE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLF--TPNYRDAMMLVGESYPFFRGNFYMTII--GEE-LD-YVR------EFASFKESKV  225 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVF--TsnaTeAlnlva~sl~~~~Gd~ivS~~--eH~-~~-~ir------~la~~~G~kV  225 (344)
                      .++.++++|+++|++.   .++|  |+|+|+|+++++.++ +++||++++.-  .|. .. .+.      ..++..|+++
T Consensus        61 ~~~Le~~lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~  136 (409)
T 3jzl_A           61 RDTLERVYATVFKTEA---ALVRPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGY  136 (409)
T ss_dssp             HHHHHHHHHHHHTCSE---EEEETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEE
T ss_pred             HHHHHHHHHHHhCCCc---EEEECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEE
Confidence            4566778999999852   4666  899999999998887 67899977543  333 21 110      2234569999


Q ss_pred             EEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC----ccc--cccccHHHHHH-HHh--CCcEEEecccccCcCCc
Q 035915          226 ILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA----DIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGED  296 (344)
Q Consensus       226 ~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a----vSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~~  296 (344)
                      +.+|.++ ++.++.++|++++++     ++++|.+..    .+|  |.+.|++.|.+ +|+  +|+++++|.+++. +..
T Consensus       137 ~~v~~~~-~g~~d~e~l~~ai~~-----~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~-~~~  209 (409)
T 3jzl_A          137 SSVPLLE-NGDVDFPRIAKKMTP-----KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE-FVE  209 (409)
T ss_dssp             EECCCCT-TSCCCHHHHHHHCCT-----TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT-TTS
T ss_pred             EEeCCCC-CCCcCHHHHHHhccC-----CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc-ccc
Confidence            9999875 578999999999875     488999887    666  99999987765 688  9999999999998 763


Q ss_pred             cCCCCCCCCcEEEEccccCCCCCCC--ceEEEEEeCCCccc
Q 035915          297 RLNLALHRPDFVLCNLDNTQNAQPS--KITCLLIRKKSFDT  335 (344)
Q Consensus       297 ~LDLs~l~~DFvv~S~HK~l~G~P~--GiG~L~Vr~~~~~~  335 (344)
                      ..+...+++|++++|+||+ +|++.  ..|+++.++++.+.
T Consensus       210 ~~~p~~~g~Div~~S~sK~-lgg~~~~~GG~v~~~~~li~~  249 (409)
T 3jzl_A          210 YQEPPEVGADIIAGSLIKN-PGGGLAKTGGYIAGKEALVDL  249 (409)
T ss_dssp             SCCSGGGTCSEEEEETTSG-GGTTTCSSCEEEEECHHHHHH
T ss_pred             cCCccccCCeEEEECcccc-CCccCCceEEEEEeCHHHHHH
Confidence            3333456899999999999 87542  13777777655443

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.56  E-value=4e-14  Score=133.84  Aligned_cols=166  Identities=11%  Similarity=0.075  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHcCC-CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          158 EIQARNKVLKHCGL-PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       158 le~AR~~IA~~Lga-~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ..+.|+++++++|+ +++  +|+||+|+|+|+++++.++ +++|++++ ....|+.  +...++..|++++.+|.+. ++
T Consensus        69 ~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~-~~  142 (367)
T 3euc_A           69 SEALRAKLKEVMQVPAGM--EVLLGNGSDEIISMLALAA-ARPGAKVMAPVPGFVM--YAMSAQFAGLEFVGVPLRA-DF  142 (367)
T ss_dssp             HHHHHHHHHHHHTCCTTC--EEEEEEHHHHHHHHHHHHT-CCTTCEEEEEESCSCC--SCHHHHTTTCEEEEEECCT-TS
T ss_pred             HHHHHHHHHHHhCCCCcc--eEEEcCCHHHHHHHHHHHH-cCCCCEEEEcCCCHHH--HHHHHHHcCCeEEEecCCC-CC
Confidence            57899999999999 544  7999999999999999988 67899864 4445542  2223456799999999886 56


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhC--CcEEEecccccCc-CCccC-CCCCCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRN--SWHVLLDATALVV-GEDRL-NLALHRP  305 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~--g~~vlvDAaQa~~-G~~~L-DLs~l~~  305 (344)
                      .++.++|++.+++.    ++++|.++..+|  |.++|.+.+.+    ++++  |+++++|.+|+.. +...+ .+...+.
T Consensus       143 ~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  218 (367)
T 3euc_A          143 TLDRGAMLAAMAEH----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGN  218 (367)
T ss_dssp             CCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTT
T ss_pred             CCCHHHHHHHhhcc----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCC
Confidence            78999999999762    367888876666  99988755543    4678  9999999998841 11111 2344567


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++.|++|+ .....++|+++++++..+
T Consensus       219 ~i~~~s~sK~-~~~G~r~G~~~~~~~~~~  246 (367)
T 3euc_A          219 LLVMRTVSKL-GLAGIRLGYVAGDPQWLE  246 (367)
T ss_dssp             EEEEEECCCT-TSCSCCEEEEEECHHHHH
T ss_pred             EEEEecchhh-cccccCceeeeeCHHHHH
Confidence            7999999997 332235899988765543

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.56  E-value=1.1e-14  Score=140.24  Aligned_cols=160  Identities=12%  Similarity=0.032  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++      +++++  +|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.
T Consensus        80 ~~~l~~~la~~l~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~  154 (406)
T 1xi9_A           80 LPELRKAIVEREKRKNGVDITPD--DVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYPP--YTGLVKFYGGKPVEYRT  154 (406)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHHTTCEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCHH--HEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCcc--HHHHHHHcCCEEEEeec
Confidence            356777788777      45554  7999999999999999987 57898854 5555552  33445567999999887


Q ss_pred             CC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc---cCCC
Q 035915          231 AW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED---RLNL  300 (344)
Q Consensus       231 ~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~---~LDL  300 (344)
                      +. .+..++.++|++.+++     ++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. +..   ..++
T Consensus       155 ~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~  228 (406)
T 1xi9_A          155 IEEEDWQPDIDDIRKKITD-----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDL-MTYEGEHISP  228 (406)
T ss_dssp             EGGGTSEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBSSSCCCCH
T ss_pred             CCCcCCcCCHHHHHHhhCc-----CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccc-cccCCCCCCH
Confidence            64 2345789999998864     477777776666  99988   55554 46889999999999987 432   1222


Q ss_pred             CC--CCC-cEEEEccccCCCCCCCc--eEEEE--EeC
Q 035915          301 AL--HRP-DFVLCNLDNTQNAQPSK--ITCLL--IRK  330 (344)
Q Consensus       301 s~--l~~-DFvv~S~HK~l~G~P~G--iG~L~--Vr~  330 (344)
                      ..  .+. |+++.|+||+ || +.|  +|+++  .++
T Consensus       229 ~~~~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~  263 (406)
T 1xi9_A          229 GSLTKDVPVIVMNGLSKV-YF-ATGWRLGYMYFVDPE  263 (406)
T ss_dssp             HHHCSSSCEEEEEESTTT-TC-CGGGCCEEEEEECTT
T ss_pred             HHcCCCceEEEEeccccc-cC-CCccEEEEEEEecCc
Confidence            22  255 8999999999 87 447  89999  665

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.56  E-value=1.3e-14  Score=144.90  Aligned_cols=167  Identities=10%  Similarity=-0.057  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEE--eCCHHHHHHHHHhhCCCCCCCeEEEcC--CcC-H-HHH-------HHHHHcCCcE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLF--TPNYRDAMMLVGESYPFFRGNFYMTII--GEE-L-DYV-------REFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVF--TsnaTeAlnlva~sl~~~~Gd~ivS~~--eH~-~-~~i-------r~la~~~G~k  224 (344)
                      .++.++++|+++|++.   .++|  ++|+|+|+.+++.++ +++||++++.-  .|+ . ..+       ...++..|++
T Consensus        75 ~~~Le~~lA~l~g~e~---alv~p~~~sGt~Ai~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~  150 (427)
T 3i16_A           75 RDSLDAVYARVFNTES---ALVRPHFVNGTHALGAALFGN-LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGIN  150 (427)
T ss_dssp             HHHHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHH-CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCE
T ss_pred             HHHHHHHHHHHhCCcc---eEEeCCCccHHHHHHHHHHHH-hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCE
Confidence            4556678999999953   4776  889999999998887 57899977543  343 2 122       0223456999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC----ccc--cccccHHHHHH-HHh--CCcEEEecccccCcCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA----DIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGE  295 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a----vSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~  295 (344)
                      ++.+|.+. ++.++.++|++++++.   .++++|.+..    .+|  |.+.|++.|.+ +++  +|+++++|.+++. +.
T Consensus       151 ~~~v~~~~-~g~~D~e~l~~~l~~~---~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~-~~  225 (427)
T 3i16_A          151 YKQVDLKE-DGKPNLEEIEKVLKED---ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGE-FM  225 (427)
T ss_dssp             EEECCCCT-TSSCCHHHHHHHHHTC---TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTT-TS
T ss_pred             EEEecCcc-CCCcCHHHHHHHhhCC---CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcc-cc
Confidence            99999875 5789999999999721   1588999887    556  99999987765 688  9999999999998 76


Q ss_pred             ccCCCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          296 DRLNLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       296 ~~LDLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      ...+.-.+++|+++.|+||+ ||+   |. .|+++.++++.+.
T Consensus       226 ~~~~p~~~gaDiv~~S~sK~-lgg~g~~~-gG~i~~~~~li~~  266 (427)
T 3i16_A          226 DTKEPTDVGADLIAGSLIKN-IGGGIAPT-GGYLAGTKDCIEK  266 (427)
T ss_dssp             SSSCGGGGTCSEEEEETTSG-GGTTTCCS-CEEEEECHHHHHH
T ss_pred             ccCCccccCCeEEEecCccc-CCCCCCce-EEEEEECHHHHHH
Confidence            33333346899999999999 886   43 4888888765543

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.56  E-value=7.7e-14  Score=135.11  Aligned_cols=158  Identities=13%  Similarity=0.040  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...++.|+.+++++|++    +++|++|+|+|+++++.++.+.+|++| +...+|+..  ...++..|++++.+|.+..+
T Consensus        42 ~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~  115 (418)
T 2c81_A           42 SMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIAT--ATAVLNVNALPVFVDVEADT  115 (418)
T ss_dssp             CHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhH--HHHHHHcCCEEEEEecCCCC
Confidence            35788999999999985    488999999999999999866789985 466677732  22334579999999987545


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCC---CCCC-CCcEEE
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN---LALH-RPDFVL  309 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD---Ls~l-~~DFvv  309 (344)
                      +.++.++|++.+++     ++++|.+.+ .+|...|++.|.+ |+++|+++++|++|+. |.. ++   +..+ ++++++
T Consensus       116 ~~~d~~~l~~~i~~-----~~~~v~~~~-~~G~~~~~~~i~~~~~~~~~~li~D~a~~~-~~~-~~~~~~~~~~~~~~~s  187 (418)
T 2c81_A          116 YCIDPQLIKSAITD-----KTKAIIPVH-LFGSMANMDEINEIAQEHNLFVIEDCAQSH-GSV-WNNQRAGTIGDIGAFS  187 (418)
T ss_dssp             CSBCHHHHGGGCCT-----TEEEECCBC-CTTCCCCHHHHHHHHHHTTCEEEEECTTCT-TCE-ETTEETTSSSSEEEEE
T ss_pred             CCcCHHHHHHhhCC-----CCeEEEEeC-CcCCcccHHHHHHHHHHCCCEEEEECcccc-cCc-cCCEecccccceEEEe
Confidence            67899999988864     477776542 2499999987764 6999999999999999 863 22   2222 144444


Q ss_pred             EccccCCCCCCCceEEEEEe
Q 035915          310 CNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr  329 (344)
                      ||+||+ +| +...|+++.+
T Consensus       188 ~s~~K~-~~-~g~~g~~~~~  205 (418)
T 2c81_A          188 CQQGKV-LT-AGEGGIIVTK  205 (418)
T ss_dssp             CCTTSS-SC-SSSCEEEEES
T ss_pred             ccCCcc-cC-CCCeEEEEEC
Confidence            445999 87 4245566654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.55  E-value=6.5e-14  Score=133.03  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.|+.+++++|++ +  .|++ .|+|+|+.+++.++ +.+|+.++ ....|..  +...++..|.++..+|..  
T Consensus        87 ~~~~~~l~~~la~~~~~~-~--~i~~-~sGt~a~~~~l~~~-~~~gd~v~~~~~~~~~--~~~~~~~~g~~~~~~~~~--  157 (399)
T 3tqx_A           87 QTIHKELEKDISEFLGTD-D--TILY-SSCFDANGGLFETL-LGPEDAIISDELNHAS--IIDGIRLCKAQRYRYKNN--  157 (399)
T ss_dssp             BHHHHHHHHHHHHHHTCS-E--EEEE-SCHHHHHHTTHHHH-CCTTCEEEEETTCCHH--HHHHHHSCCSEEEEECTT--
T ss_pred             chHHHHHHHHHHHHHCCC-c--EEEE-CchHHHHHHHHHHh-cCCCCEEEECCcccHH--HHHHHHHcCCceeEeCCC--
Confidence            456789999999999985 2  4555 45688998887776 57888865 4444543  233456679999888853  


Q ss_pred             CCccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCC------CCC-
Q 035915          234 DLRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN------LAL-  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD------Ls~-  302 (344)
                          +.++|++.+++... ..++++|.++..+|  |.++|++.|.+ |+++|+++++|.+|+. |...-+      ... 
T Consensus       158 ----d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~  232 (399)
T 3tqx_A          158 ----AMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAV-GFIGENGRGTPEYCGV  232 (399)
T ss_dssp             ----CTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT-TTSSTTSCCHHHHHTC
T ss_pred             ----CHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCchHHhhCC
Confidence                34577777764210 01478888887766  99999987764 6999999999999986 653322      112 


Q ss_pred             -CCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          303 -HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       303 -l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                       .++|+++.|+||+ ||+|.| |+++.+++..+
T Consensus       233 ~~~~di~~~s~sK~-~~g~~g-G~~~~~~~~~~  263 (399)
T 3tqx_A          233 ADRVDILTGTLGKA-LGGASG-GYTSGHKEIIE  263 (399)
T ss_dssp             TTCCSEEEEESSSS-SCSSCC-EEEEECHHHHH
T ss_pred             CCCCcEEEecchHh-cccCce-EEEEcCHHHHH
Confidence             2689999999999 876777 99988876544

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.55  E-value=9.9e-14  Score=131.89  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.|+.+++++|++    +++|+.|+|+|+.+++.++ ..+|+.++ ....|..  ....++..|++++.+|.   
T Consensus        83 ~~~~~~l~~~la~~~g~~----~~i~~~sGt~a~~~~~~~~-~~~gd~v~~~~~~~~~--~~~~~~~~g~~~~~~~~---  152 (384)
T 1bs0_A           83 SVVHQALEEELAEWLGYS----RALLFISGFAANQAVIAAM-MAKEDRIAADRLSHAS--LLEAASLSPSQLRRFAH---  152 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHH--HHHHHHTSSSEEEEECT---
T ss_pred             hHHHHHHHHHHHHHhCCC----cEEEeCCcHHHHHHHHHHh-CCCCcEEEEcccccHH--HHHHHHHcCCCEEEeCC---
Confidence            356789999999999984    3666666699999988887 56888865 4444442  22334557999988874   


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---C---CCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---L---NLALHR  304 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---L---DLs~l~  304 (344)
                         ++.++|++.+++..  .++++|.++..+|  |.++|++.|.+ |+++|+++++|.+|+. |...   .   +.-..+
T Consensus       153 ---~d~~~l~~~l~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  226 (384)
T 1bs0_A          153 ---NDVTHLARLLASPC--PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGT-GVIGEQGRGSCWLQKVK  226 (384)
T ss_dssp             ---TCHHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT-TTSSGGGCCHHHHTTCC
T ss_pred             ---CCHHHHHHHHHhcC--CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCccc-ceecCCCCchHHhcCCC
Confidence               35778888886521  1367888876665  99999987754 7999999999999987 7531   1   111246


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|+++.|+||+ || |.| |++++++++.+
T Consensus       227 ~di~~~s~sK~-~~-~~G-G~~~~~~~~~~  253 (384)
T 1bs0_A          227 PELLVVTFGKG-FG-VSG-AAVLCSSTVAD  253 (384)
T ss_dssp             CSEEEEESSST-TS-SCC-EEEEECHHHHH
T ss_pred             CcEEEeeccch-hh-ccC-cEEEeCHHHHH
Confidence            89999999999 88 778 99999876543

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.55  E-value=1.9e-14  Score=138.85  Aligned_cols=165  Identities=13%  Similarity=-0.013  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHc----CCCCCCC-eEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          159 IQARNKVLKHC----GLPDDEY-LVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       159 e~AR~~IA~~L----ga~p~ey-~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .+.|+.+++++    |++.+.. +|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.+.
T Consensus        65 ~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-~~~gd~Vl~~~~~y~~--~~~~~~~~g~~~~~v~~~~  141 (411)
T 2o0r_A           65 APLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-VEPGSEVLLIEPFYDS--YSPVVAMAGAHRVTVPLVP  141 (411)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECEE
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-cCCCCEEEEeCCCcHh--HHHHHHHcCCEEEEeeccc
Confidence            44666666665    7532222 6999999999999999887 57888854 5566663  2233455799999998764


Q ss_pred             C--CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcCCc----cCCC
Q 035915          233 L--DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGED----RLNL  300 (344)
Q Consensus       233 ~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~~----~LDL  300 (344)
                      .  +..++.++|++.+++     ++++|.++..+|  |.++|.   +.|. .|+++|+++++|.+|+. +..    +.++
T Consensus       142 ~~~~~~~d~~~l~~~l~~-----~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~  215 (411)
T 2o0r_A          142 DGRGFALDADALRRAVTP-----RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEH-LVFDHARHLPL  215 (411)
T ss_dssp             ETTEEECCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCG
T ss_pred             cccCCCCCHHHHHHhhcc-----CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCcCh
Confidence            2  345889999998864     477888776666  999997   3443 35889999999999986 431    2233


Q ss_pred             CC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 AL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..    .+.|+++.|+||+ || +.|  +|++++++++.+
T Consensus       216 ~~~~~~~~~~i~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  253 (411)
T 2o0r_A          216 AGFDGMAERTITISSAAKM-FN-CTGWKIGWACGPAELIA  253 (411)
T ss_dssp             GGSTTTGGGEEEEEEHHHH-TT-CTTTCEEEEECCHHHHH
T ss_pred             hhccCCCCCEEEEeechhh-cC-CccceEEEEeeCHHHHH
Confidence            22    4679999999999 88 448  999998765543

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.55  E-value=9.8e-14  Score=132.69  Aligned_cols=163  Identities=12%  Similarity=0.077  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .....+.|+.+++++|++    +.+|+.|+|+|+.+++.++ +.+|+.++ ....|..  ....++..|++++.+|.   
T Consensus        89 ~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~~~~~~-~~~gd~v~~~~~~~~~--~~~~~~~~g~~~~~~~~---  158 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGME----DAILYSSCFDANGGLFETL-LGAEDAIISDALNHAS--IIDGVRLCKAKRYRYAN---  158 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHTTHHHH-CCTTCEEEEETTCCHH--HHHHHHTSCSEEEEECT---
T ss_pred             cHHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-cCCCCEEEEcchhHHH--HHHHHHHcCCceEEECC---
Confidence            456789999999999985    2456666788999888776 56888865 4445542  12234567999888873   


Q ss_pred             CCccCHHHHHHHhhhcCC-CCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-c--------CCC
Q 035915          234 DLRIKGSQLSQYFRRKCK-HTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-R--------LNL  300 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~--------LDL  300 (344)
                         ++.++|++.+++... ..++++|.++..+|  |.++|++.|.+ |+++|+++++|.+|+. |.. +        +++
T Consensus       159 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~-g~~~~~g~~~~~~~~~  234 (401)
T 1fc4_A          159 ---NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAV-GFVGENGRGSHEYCDV  234 (401)
T ss_dssp             ---TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTT-TTSSTTSCCHHHHTTC
T ss_pred             ---CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccc-cccCCCCCccHHHcCC
Confidence               356788888764100 00367888887766  99999987754 6999999999999986 654 3        555


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .. ++|+++.|+||+ |++|.| |++++++++.+
T Consensus       235 ~~-~~di~~~s~sK~-~~~~~g-G~~~~~~~~~~  265 (401)
T 1fc4_A          235 MG-RVDIITGTLGKA-LGGASG-GYTAARKEVVE  265 (401)
T ss_dssp             TT-CCSEEEEESSST-TCSSSC-EEEEECHHHHH
T ss_pred             Cc-CCcEEEecchhh-ccCCCC-EEEEcCHHHHH
Confidence            43 689999999999 844667 99998876544

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.55  E-value=3.8e-14  Score=134.94  Aligned_cols=161  Identities=11%  Similarity=0.001  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCC-CeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRG-NFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~G-d~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ..+.|+++|+++|++++  +|+||+|+|+++++++.++ ..+| ++++ ..-.|+.  ....++..|++++.+|.+. +.
T Consensus        60 ~~~lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p~~~~--~~~~~~~~g~~~~~v~~~~-~~  133 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGM--YSVSAETIGVECRTVPTLD-NW  133 (356)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTH--HHHHHHHHTCEEEECCCCT-TS
T ss_pred             HHHHHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCCChHH--HHHHHHHcCCEEEEeeCCC-CC
Confidence            46799999999999876  7999999999999999987 4678 8865 3444552  2233344589999988864 45


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCcc---CCC-CCCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDR---LNL-ALHRP  305 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~---LDL-s~l~~  305 (344)
                      .++.++|++.++      ++++|.++..+|  |.++|.+.+.+    ++ +|+++++|.+|+. ....   +++ ...+.
T Consensus       134 ~~d~~~l~~~i~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~-~~~~~~~~~~~~~~~~  205 (356)
T 1fg7_A          134 QLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIE-FCPQASLAGWLAEYPH  205 (356)
T ss_dssp             CCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGG-GSGGGCSGGGTTTCTT
T ss_pred             CCCHHHHHHHhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchh-hcCCCcHHHHHhhCCC
Confidence            678888887764      367888876666  99999876654    34 8999999999985 3311   233 33467


Q ss_pred             cEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++++.|++|+ || +.|  +|++++++++.+
T Consensus       206 ~i~~~s~sK~-~g-~~G~r~G~~~~~~~~~~  234 (356)
T 1fg7_A          206 LAILRTLSKA-FA-LAGLRCGFTLANEEVIN  234 (356)
T ss_dssp             EEEEEESSST-TC-CGGGCCEEEEECHHHHH
T ss_pred             EEEEecchHh-hc-CchhhhEEEEeCHHHHH
Confidence            8999999999 87 447  799999776543

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.55  E-value=3.4e-14  Score=134.71  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+++++++|++++  +|+||+|+|+++++++.++   +|+.|+ ....|+.  +...++..|++++.+|.+..++ 
T Consensus        61 ~~~l~~~la~~~~~~~~--~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~-  132 (364)
T 1lc5_A           61 YFHLHQALARHHQVPAS--WILAGNGETESIFTVASGL---KPRRAMIVTPGFAE--YGRALAQSGCEIRRWSLREADG-  132 (364)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTH--HHHHHHHTTCEEEEEECCGGGT-
T ss_pred             HHHHHHHHHHHHCcCHH--HEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHH--HHHHHHHcCCeEEEEeCCcccc-
Confidence            57899999999999765  7999999999999999988   567754 4444553  2334455799999999864211 


Q ss_pred             cC-HHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc----cCCC-CCCC
Q 035915          237 IK-GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED----RLNL-ALHR  304 (344)
Q Consensus       237 i~-~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~----~LDL-s~l~  304 (344)
                      ++ .+++.+.+++     +++++.++..+|  |.++|   ++.|. .++++|+++++|.+|+. +..    .+++ ...+
T Consensus       133 ~~~l~~~~~~~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~  206 (364)
T 1lc5_A          133 WQLTDAILEALTP-----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFID-FIPHETGFIPALKDNP  206 (364)
T ss_dssp             TCCCTTHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GSTTCCCSGGGCTTCT
T ss_pred             cchhHHHHHhccC-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChh-hccCccchhhHhccCC
Confidence            22 2334444432     467777766665  99999   55554 46889999999999986 432    2333 3457


Q ss_pred             CcEEEEccccCCCCCCCc--eEEEE-EeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSK--ITCLL-IRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~G--iG~L~-Vr~~~~~  334 (344)
                      .|+++.|+||+ ||.| |  +|+++ .+++..+
T Consensus       207 ~~i~~~s~sK~-~~~~-G~r~G~~~~~~~~~~~  237 (364)
T 1lc5_A          207 HIWVLRSLTKF-YAIP-GLRLGYLVNSDDAAMA  237 (364)
T ss_dssp             TEEEEEESTTT-TTCT-TTCCEEEECCCHHHHH
T ss_pred             CEEEEEECchh-hcCC-ccceEEEEECCHHHHH
Confidence            89999999999 8744 6  79998 7765543

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.55  E-value=4e-13  Score=131.06  Aligned_cols=162  Identities=11%  Similarity=0.096  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ....++.|+.+++++|++    +++|+.|+|+|+..++.++ +.+|+.|+ ....|..  +...++..|++++.+|.   
T Consensus       108 ~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~al~~l-~~~gd~vl~~~~~h~~--~~~~~~~~g~~~~~~~~---  177 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTT----GAIVFSTGYMANLGIISTL-AGKGEYVILDADSHAS--IYDGCQQGNAEIVRFRH---  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCTTCEEEEETTCCHH--HHHHHHHSCSEEEEECT---
T ss_pred             cHHHHHHHHHHHHHhCCC----ceEEecCcHHHHHHHHHHh-cCCCCEEEECCcccHH--HHHHHHHcCCeeEEeCC---
Confidence            356788999999999984    3666777778988887776 57888865 4444442  22223446888887773   


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------CCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------LNLA  301 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------LDLs  301 (344)
                         .+.++|++.+++.. ..++++|.+...+|  |.+.|++.|.+ |+++|+++++|.+|+. |...         +++.
T Consensus       178 ---~d~~~le~~l~~~~-~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~-~~~~~~g~~~~~~~~~~  252 (427)
T 2w8t_A          178 ---NSVEDLDKRLGRLP-KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSM-GFFGPNGRGVYEAQGLE  252 (427)
T ss_dssp             ---TCHHHHHHHHHTSC-SSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT-TTSSTTSCCHHHHTTCT
T ss_pred             ---CCHHHHHHHHHhcc-CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCchHhhcCCC
Confidence               36788998886521 11478888887766  99999987765 6999999999999998 7665         5664


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                       .++|++++|+||+ || +.| |+++.++++.+.
T Consensus       253 -~~~di~~~s~sK~-~g-~~g-G~v~~~~~l~~~  282 (427)
T 2w8t_A          253 -GQIDFVVGTFSKS-VG-TVG-GFVVSNHPKFEA  282 (427)
T ss_dssp             -TCCSEEEEESSST-TC-SCC-EEEEECCTTGGG
T ss_pred             -cCCcEEEecchhh-hc-cCC-CEEEeCHHHHHH
Confidence             3789999999999 88 657 999999877654

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.54  E-value=9.4e-14  Score=133.70  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHcC------------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcE
Q 035915          158 EIQARNKVLKHCG------------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lg------------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~k  224 (344)
                      ..+.|+.+|++++            ++++  +|+||+|+|+|+++++.++ ..+|+.|+ ....|+.  +...++..|++
T Consensus        77 ~~~lr~~la~~~~~~~~~~~~~~~~~~~~--~v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~--~~~~~~~~g~~  151 (416)
T 1bw0_A           77 SPEAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPH--YETVCKAYGIG  151 (416)
T ss_dssp             CHHHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHTTCE
T ss_pred             CHHHHHHHHHHHHhhhcccccCCCCCCcc--eEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcHh--HHHHHHHcCcE
Confidence            4678889999998            6655  7999999999999999887 56888854 5556663  23345567999


Q ss_pred             EEEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc---C
Q 035915          225 VILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV---G  294 (344)
Q Consensus       225 V~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~---G  294 (344)
                      ++.+|.+.. +..++.++|++.+++     +++++.+...+|  |.++|   ++.|. .|+++|+++++|.+++..   |
T Consensus       152 ~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g  226 (416)
T 1bw0_A          152 MHFYNCRPENDWEADLDEIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG  226 (416)
T ss_dssp             EEEEEEEGGGTTEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred             EEEeecCcccCCCCCHHHHHHHhcc-----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence            999887532 245789999988864     367777776666  99999   65554 468899999999999851   2


Q ss_pred             C----ccCCCCCC---CCcEEEEccccCCCCCCCc--eEEEEEeCC
Q 035915          295 E----DRLNLALH---RPDFVLCNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       295 ~----~~LDLs~l---~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      +    ...++..+   +.++++.|++|+ |+.| |  +|+++++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~-Glr~G~~~~~~~  270 (416)
T 1bw0_A          227 KDPNATFTSVADFETTVPRVILGGTAKN-LVVP-GWRLGWLLYVDP  270 (416)
T ss_dssp             SCTTCCCCCTTSSCCSCCEEEEEESTTT-TSCG-GGCCEEEEEECT
T ss_pred             CCCCCCccCHHHccCCCcEEEEecchhh-CCCC-CceEEEEEeeCc
Confidence            2    12334332   235788999999 8766 6  899999874

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.54  E-value=9.5e-14  Score=134.76  Aligned_cols=160  Identities=10%  Similarity=-0.038  Sum_probs=114.8

Q ss_pred             HHHHHHHHH-HHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKV-LKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~I-A~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...+.|+++ |+++|+. +  .++||+|+|+|+++++.++.+++||+| ++..+|...  ...+...|++++.++.+..+
T Consensus        37 ~~~~l~~~~~a~~~g~~-~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~--~~~~~~~G~~~~~v~~~~~~  111 (377)
T 3ju7_A           37 INQRFEQTIMSGFFQNR-G--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPAT--PLAAIWCGLEPYFIDISIDD  111 (377)
T ss_dssp             HHHHHHHHHHHHTSTTC-S--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHhCCC-C--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH--HHHHHHcCCEEEEEecCCcc
Confidence            467889999 9999932 3  599999999999999998777899995 467777732  22334579999999987556


Q ss_pred             CccCHHHHHHHh-hhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCC---CCcEEE
Q 035915          235 LRIKGSQLSQYF-RRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALH---RPDFVL  309 (344)
Q Consensus       235 g~i~~~~L~~~l-~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l---~~DFvv  309 (344)
                      +.++.++|++++ +++   .+|++|...+ .+|...|++.|.+ ++ +|+++++|++|+. |... +-..+   ..|+.+
T Consensus       112 ~~~d~~~l~~~i~~~~---~~tk~v~~~~-~~G~~~~~~~i~~la~-~~~~vi~D~a~a~-g~~~-~~~~~g~~~~d~~~  184 (377)
T 3ju7_A          112 WYMDKTVLWDKIEELK---EEVAIVVPYA-TFGSWMNLEEYEELEK-KGVPVVVDAAPGF-GLMN-GGMHYGQDFSGMII  184 (377)
T ss_dssp             CSBCHHHHHHHHHHHG---GGEEEECCBC-GGGBCCCCHHHHHHHH-TTCCBEEECTTCT-TCEE-TTEETTTTCSSEEE
T ss_pred             CCcCHHHHHHHHhcCC---CCceEEEEEC-CCCCccCHHHHHHHHh-cCCEEEEECCCcc-CCeE-CCEeccCCCCcEEE
Confidence            789999999988 442   1267776321 2499999988765 68 9999999999999 8642 22222   145555


Q ss_pred             Ec--cccCCCCCCCceEEEEEeC
Q 035915          310 CN--LDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       310 ~S--~HK~l~G~P~GiG~L~Vr~  330 (344)
                      +|  .||+ ++++ ..|+++.++
T Consensus       185 ~S~~~~K~-l~~g-~gG~~~~~~  205 (377)
T 3ju7_A          185 YSFHATKP-FGIG-EGGLIYSKN  205 (377)
T ss_dssp             EECBTTSS-SCCB-SCEEEEESC
T ss_pred             EECCCCCc-CCCC-CcEEEEECC
Confidence            55  6799 8742 334444443

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.54  E-value=1.6e-14  Score=136.78  Aligned_cols=159  Identities=15%  Similarity=0.179  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      .+.|+++++++|++++  +|+||+|+|+|+++++.++ +++||.|+ ....|+.  +...++..|++++.+|.+. +..+
T Consensus        68 ~~lr~~la~~~g~~~~--~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~v~~~~-~~~~  141 (360)
T 3hdo_A           68 QKLREVAGELYGFDPS--WIIMANGSDEVLNNLIRAF-AAEGEEIGYVHPSYSY--YGTLAEVQGARVRTFGLTG-DFRI  141 (360)
T ss_dssp             HHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCTH--HHHHHHHHTCEEEEECBCT-TSSB
T ss_pred             HHHHHHHHHHhCcCcc--eEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCChHH--HHHHHHHCCCEEEEeeCCC-CCCH
Confidence            6789999999998776  7999999999999999988 57899865 4445552  2334455699999998865 2344


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCCC-CCCCCcEEEEcc
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLNL-ALHRPDFVLCNL  312 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LDL-s~l~~DFvv~S~  312 (344)
                        +++.+.+       +++++.++..+|  |.++|++.+.+ ++++|+++++|.+|+.. |...+.+ ...+.++++.|+
T Consensus       142 --~~l~~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~  212 (360)
T 3hdo_A          142 --AGFPERY-------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTL  212 (360)
T ss_dssp             --TTCCSSB-------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEES
T ss_pred             --HHHHhhc-------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecc
Confidence              3332221       245777777666  99999987765 68899999999999831 3323332 224566899999


Q ss_pred             ccCCCCCC-CceEEEEEeCCCc
Q 035915          313 DNTQNAQP-SKITCLLIRKKSF  333 (344)
Q Consensus       313 HK~l~G~P-~GiG~L~Vr~~~~  333 (344)
                      +|+ ||.| -++|++++++++.
T Consensus       213 sK~-~g~~G~r~G~~~~~~~~~  233 (360)
T 3hdo_A          213 SKS-YSLAGMRIGLAIARPEVI  233 (360)
T ss_dssp             TTT-TSCTTSCCEEEECCHHHH
T ss_pred             hHh-hcCCccceeeEeeCHHHH
Confidence            999 8744 2478888766544

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.54  E-value=3.1e-14  Score=137.49  Aligned_cols=163  Identities=14%  Similarity=0.125  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.++++++      ++++  +|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.
T Consensus        81 ~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~  155 (409)
T 2gb3_A           81 IWELREAFASYYKRRQRVDVKPE--NVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYAN--YNAFAKIAGVKLIPVTR  155 (409)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHHTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCHH--HEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCchh--HHHHHHHcCCEEEEecc
Confidence            3567777887774      4444  7999999999999999987 57888854 5566662  22234445899999998


Q ss_pred             CC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcCCc---cCC-
Q 035915          231 AW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGED---RLN-  299 (344)
Q Consensus       231 ~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~~---~LD-  299 (344)
                      +. .+..+ .++|++.+++     ++++|.++..+|  |.++|.   +.|. .|+++|+++++|.+|+. +..   .+. 
T Consensus       156 ~~~~~~~~-~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~-~~~~~~~~~~  228 (409)
T 2gb3_A          156 RMEEGFAI-PQNLESFINE-----RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSE-IVFRGEFASA  228 (409)
T ss_dssp             CGGGTSCC-CTTGGGGCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCG
T ss_pred             CCCCCCcc-HHHHHHhhCc-----CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccc-cccCCCCCCc
Confidence            64 12233 6677777754     477887776666  999874   4443 35899999999999987 542   222 


Q ss_pred             CCC-CCCcEEEEccccCCCCCCCc--eEEEEEeC-CCcc
Q 035915          300 LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLIRK-KSFD  334 (344)
Q Consensus       300 Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~-~~~~  334 (344)
                      +.. .+.|+++.|+||+ || +.|  +|++++++ ++.+
T Consensus       229 ~~~~~~~~i~~~s~sK~-~g-~~G~r~G~~~~~~~~l~~  265 (409)
T 2gb3_A          229 LSIESDKVVVIDSVSKK-FS-ACGARVGCLITRNEELIS  265 (409)
T ss_dssp             GGSCCTTEEEEEESTTT-TT-CGGGCCEEEECSCHHHHH
T ss_pred             cccCCCCEEEEecchhc-cC-CccceEEEEEECcHHHHH
Confidence            333 3679999999999 87 447  89999887 5543

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.54  E-value=2.2e-13  Score=129.07  Aligned_cols=163  Identities=9%  Similarity=0.058  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHcC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++.+++++|  ++++  +|+||+|+|+|+++++.++ +.+|+.++ ....|+.  +...++..|++++.+|.+
T Consensus        70 ~~~~~~l~~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~  144 (391)
T 4dq6_A           70 DSYNESIVNWLYRRHNWKIKSE--WLIYSPGVIPAISLLINEL-TKANDKIMIQEPVYSP--FNSVVKNNNRELIISPLQ  144 (391)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCTH--HHHHHHHTTCEEEECCCE
T ss_pred             HHHHHHHHHHHHHHhCCCCcHH--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCHH--HHHHHHHcCCeEEeeeee
Confidence            4566889999999999  5555  7999999999999999887 57889865 4444552  233445679999999887


Q ss_pred             -CCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCcCC----ccC
Q 035915          232 -WLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVVGE----DRL  298 (344)
Q Consensus       232 -~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~G~----~~L  298 (344)
                       +.++  .++.++|++.+++      +++|.++..+|  |.++|.+   .|. .|+++|+++++|.+|+. ..    ...
T Consensus       145 ~~~~~~~~~d~~~l~~~l~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~  217 (391)
T 4dq6_A          145 KLENGNYIMDYEDIENKIKD------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD-IILKKHKHI  217 (391)
T ss_dssp             ECTTSCEECCHHHHHHHCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCC
T ss_pred             ecCCCceEeeHHHHHHHhhc------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccc-cccCCCCcc
Confidence             3223  4789999988853      67888877666  9997654   343 35889999999999986 32    233


Q ss_pred             CCCCCCCc-----EEEEccccCCCCCC-CceEEEEEeC
Q 035915          299 NLALHRPD-----FVLCNLDNTQNAQP-SKITCLLIRK  330 (344)
Q Consensus       299 DLs~l~~D-----Fvv~S~HK~l~G~P-~GiG~L~Vr~  330 (344)
                      ++..+.+|     +++.|++|+ ||.| -++|++++++
T Consensus       218 ~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~  254 (391)
T 4dq6_A          218 PMASISKEFEKNTITCMAPTKT-FNIAGLQSSYVVLPD  254 (391)
T ss_dssp             CGGGSCHHHHHTEEEEECSHHH-HTCGGGCCEEEECCS
T ss_pred             CHHHcCccccCcEEEEEechhh-ccCcccceEEEEeCC
Confidence            44444444     999999999 8734 1478888776

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.53  E-value=5.1e-14  Score=135.89  Aligned_cols=165  Identities=7%  Similarity=-0.086  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |+  +++ .+|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.
T Consensus        77 ~~~l~~~ia~~~~~~~g~~~~~~-~~v~~t~g~~~a~~~~~~~~-~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~  152 (412)
T 2x5d_A           77 IPRLRRAISHWYRDRYDVQIDPE-SEAIVTIGSKEGLAHLMLAT-LDHGDTILVPNPSYPI--HIYGAVIAGAQVRSVPL  152 (412)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTT-TSEEEESCHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHHHTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCC-cCEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchh--HHHHHHHcCCEEEEeec
Confidence            467888888888    85  441 27999999999999999987 56888865 4555552  22333446899999998


Q ss_pred             CCCCC-ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCCc----cCC
Q 035915          231 AWLDL-RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGED----RLN  299 (344)
Q Consensus       231 ~~~~g-~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~~----~LD  299 (344)
                      +..++ .++.++|++.+++     ++++|.++..+|  |.++|.+.   |. .|+++|+++++|.+|+. +..    ..+
T Consensus       153 ~~~~~~~~d~~~l~~~i~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~  226 (412)
T 2x5d_A          153 VPGIDFFNELERAIRESIP-----KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYAD-IVYDGWKAPS  226 (412)
T ss_dssp             STTSCHHHHHHHHHHTEES-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCC
T ss_pred             CCccCCCCCHHHHHHhccc-----CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCCC
Confidence            75322 3677888887764     366777766666  99998643   33 35889999999999997 542    233


Q ss_pred             CCC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          300 LAL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       300 Ls~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +..    .+.|+++.|+||+ ||.| |  +|++++++++.+
T Consensus       227 ~~~~~~~~~~~i~~~s~sK~-~~~~-G~r~G~~~~~~~~~~  265 (412)
T 2x5d_A          227 IMQVPGAKDIAVEFFTLSKS-YNMA-GWRIGFMVGNPELVS  265 (412)
T ss_dssp             GGGSTTGGGTEEEEEECC-C-CSCT-TSCCEEEEECHHHHH
T ss_pred             hhhccCccCcEEEEecCccc-cCCc-ccceEEEEcCHHHHH
Confidence            332    3678999999999 8744 6  799999776543

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.53  E-value=8.4e-14  Score=129.99  Aligned_cols=171  Identities=12%  Similarity=0.045  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHH--HHHcC-CcEEEEEeC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVRE--FASFK-ESKVILAPE  230 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~--la~~~-G~kV~~vp~  230 (344)
                      ....++.|+.+++++| . + .+|+||+|+|+|+.+++.++ ..+|+.++. ...|... ...  +.... |++++.+|.
T Consensus        42 ~~~~~~l~~~la~~~g-~-~-~~v~~~~~gt~a~~~al~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~~~g~~~~~v~~  116 (356)
T 1v72_A           42 DELTAQVKRKFCEIFE-R-D-VEVFLVPTGTAANALCLSAM-TPPWGNIYCHPASHINN-DECGAPEFFSNGAKLMTVDG  116 (356)
T ss_dssp             SHHHHHHHHHHHHHHT-S-C-CEEEEESCHHHHHHHHHHTS-CCTTEEEEECTTSHHHH-SSTTHHHHHTTSCEEEECCC
T ss_pred             chHHHHHHHHHHHHhC-C-C-CcEEEeCCccHHHHHHHHHh-cCCCCEEEEcCccchhh-hhchHHHHHhCCcEEEEecC
Confidence            3466889999999999 3 2 26999999999999998886 468888654 4344321 111  22223 889988887


Q ss_pred             CCCCCccCHHHHHH-Hhhhc--CCCCCeeEEEEeCccc-cccccH---HHHH-HHHhCCcEEEecccccCc-----CCcc
Q 035915          231 AWLDLRIKGSQLSQ-YFRRK--CKHTPKGLFSYPADIN-GTRYSM---HWIS-EAHRNSWHVLLDATALVV-----GEDR  297 (344)
Q Consensus       231 ~~~~g~i~~~~L~~-~l~~~--~~~~~t~LVa~~avSN-G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~-----G~~~  297 (344)
                      +  ++.++.++|++ .+++.  ....++++|.+...+| |.++|.   +.|. .|+++|+++++|++|+..     |..+
T Consensus       117 ~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~  194 (356)
T 1v72_A          117 P--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP  194 (356)
T ss_dssp             G--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT
T ss_pred             C--CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH
Confidence            5  36789999998 88641  0011468888876555 996665   4443 358999999999998630     2111


Q ss_pred             CCCC-CCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          298 LNLA-LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       298 LDLs-~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ..+. ..++|++++|+||+  |+|.|+|+++.++++.+
T Consensus       195 ~~~~~~~~~d~~~~s~sK~--g~~~G~g~~~~~~~~~~  230 (356)
T 1v72_A          195 AEMTWKAGVDALSFGATKN--GVLAAEAIVLFNTSLAT  230 (356)
T ss_dssp             TTTTGGGTCCEEEECCGGG--TCSSCEEEEESSGGGHH
T ss_pred             HHhhhhhcCCEEEEecccC--CCcCccEEEEECHHHHh
Confidence            1111 13789999999998  45989899988776654

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.53  E-value=3.7e-14  Score=141.55  Aligned_cols=166  Identities=8%  Similarity=-0.065  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEE--eCCHHHHHHHHHhhCCCCCCCeEEEcC--CcC-H-HHH-------HHHHHcCCcE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLF--TPNYRDAMMLVGESYPFFRGNFYMTII--GEE-L-DYV-------REFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVF--TsnaTeAlnlva~sl~~~~Gd~ivS~~--eH~-~-~~i-------r~la~~~G~k  224 (344)
                      .++.++++|+++|++.   .++|  ++|+|+|+.+++.++ +++||++++.-  .|+ . ..+       ...++..|++
T Consensus        76 ~~~Le~~lA~l~g~e~---alv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~  151 (427)
T 3hvy_A           76 RDSLDRVYANIFNTES---AFVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVK  151 (427)
T ss_dssp             HHHHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCE
T ss_pred             HHHHHHHHHHHhCCCc---eEEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCE
Confidence            5667789999999853   4676  888999999999887 68999977543  333 1 111       0223456999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC----ccc--cccccHHHHHH-HHh--CCcEEEecccccCcCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA----DIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGE  295 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a----vSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~  295 (344)
                      ++.+|.+  ++.++.++|++++++.   .++++|.+..    .+|  |.+.|++.|.+ |++  +|+++++|.+++. +.
T Consensus       152 ~~~v~~~--~~~~d~e~l~~~i~~~---~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~-~~  225 (427)
T 3hvy_A          152 YKMVDLK--DGKVDINTVKEELKKD---DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGE-FV  225 (427)
T ss_dssp             EEECCCB--TTBCCHHHHHHHHHHC---TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCT-TT
T ss_pred             EEEecCC--CCCcCHHHHHHHhhCC---CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccc-cc
Confidence            9998873  5789999999999731   1588999887    555  99999987765 688  8999999999998 76


Q ss_pred             ccCCCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          296 DRLNLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       296 ~~LDLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      ...+--.+++|+++.|+||+ +|+   |.| |+++.++++.+.
T Consensus       226 ~~~~p~~~gaDiv~~S~sK~-lgg~g~~~G-G~i~~~~~li~~  266 (427)
T 3hvy_A          226 EEKEPTDVGADIIAGSLIKN-IGGGIATTG-GYIAGKEEYVTQ  266 (427)
T ss_dssp             SSSCGGGGTCSEEEEETTSG-GGTTTCCSC-EEEEECHHHHHH
T ss_pred             cCCCCcccCCeEEEECCccc-ccccccceE-EEEEECHHHHHH
Confidence            32222246799999999999 886   544 888887765543

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.52  E-value=2.5e-13  Score=132.54  Aligned_cols=162  Identities=19%  Similarity=0.113  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHcC-----CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          158 EIQARNKVLKHCG-----LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       158 le~AR~~IA~~Lg-----a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..+.|+.++++++     ++++  +|+||+|+|+|+++++..+ ..+|+.|+ ..-.|+.  +...++..|++++.+|.+
T Consensus        98 ~~~lr~~la~~~~~~~~~~~~~--~v~~t~g~t~al~~~~~~l-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~~  172 (427)
T 3dyd_A           98 FLSSREEIASYYHCPEAPLEAK--DVILTSGCSQAIDLCLAVL-ANPGQNILVPRPGFSL--YKTLAESMGIEVKLYNLL  172 (427)
T ss_dssp             CHHHHHHHHHHHCBTTBCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHTTCEEEEEEEE
T ss_pred             cHHHHHHHHHHHhhcCCCCChH--HEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCchh--HHHHHHHcCCEEEEEecc
Confidence            4679999999999     6655  7999999999999999987 46788865 4444442  334456679999998875


Q ss_pred             C-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHHH-HHhCCcEEEecccccCc---CCccCCCC
Q 035915          232 W-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWISE-AHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       232 ~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia~-ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      . .+..++.++|++.+++     +++++.+...+|  |.++|   ++.|.+ |+++|+++++|.++...   |....++.
T Consensus       173 ~~~~~~~d~~~l~~~l~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~  247 (427)
T 3dyd_A          173 PEKSWEIDLKQLEYLIDE-----KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLA  247 (427)
T ss_dssp             GGGTTEECHHHHHSSCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGG
T ss_pred             cccCCCCCHHHHHHHhcc-----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHH
Confidence            3 1346789999888864     477787777676  99999   655544 68999999999999851   22233444


Q ss_pred             CCCCc---EEEEccccCCCCCCCc--eEEEEEeCC
Q 035915          302 LHRPD---FVLCNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       302 ~l~~D---Fvv~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      .++.|   +++.|++|. ||.| |  +|++++++.
T Consensus       248 ~~~~~~~vi~~~S~sK~-~~~~-G~riG~~~~~~~  280 (427)
T 3dyd_A          248 TLSTDVPILSCGGLAKR-WLVP-GWRLGWILIHDR  280 (427)
T ss_dssp             GGCSSCCEEEEEESTTT-SSCG-GGCCEEEEEECS
T ss_pred             HhCCCCcEEEEeecccc-CCCc-CcceEEEEecCc
Confidence            44444   667899998 7755 6  899999853

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.52  E-value=6.9e-14  Score=135.45  Aligned_cols=166  Identities=10%  Similarity=-0.001  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHc----CCCCCCC-eEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          159 IQARNKVLKHC----GLPDDEY-LVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       159 e~AR~~IA~~L----ga~p~ey-~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      .+.|+.+++++    |++.+.. +|+||+|+|+|+++++.++ ..+|+.|+ ..-.|+.  +...++..|++++.+|.+.
T Consensus        80 ~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~~~~~~  156 (429)
T 1yiz_A           80 PRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC--YEPMVKAAGGIPRFIPLKP  156 (429)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCchh--HHHHHHHcCCEEEEEeCCc
Confidence            45666677665    7432222 5999999999999999887 46788864 4445552  2223445699999999875


Q ss_pred             C---------CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc---C
Q 035915          233 L---------DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV---G  294 (344)
Q Consensus       233 ~---------~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~---G  294 (344)
                      .         +..++.++|++.+++     ++++|.+...+|  |.++|   ++.|. .|+++|+++++|.+|+..   |
T Consensus       157 ~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g  231 (429)
T 1yiz_A          157 NKTGGTISSADWVLDNNELEALFNE-----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP  231 (429)
T ss_dssp             CCSSSSEEGGGCBCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccCcccCHHHHHHHhcc-----CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCC
Confidence            3         245789999988864     477887776666  99997   54554 468899999999999841   1


Q ss_pred             C--ccC-CCC-CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          295 E--DRL-NLA-LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       295 ~--~~L-DLs-~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .  .++ .+. ..+.|+++.|+||+ || +.|  +|++++++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~s~sK~-~~-~~G~r~G~~~~~~~~~~  275 (429)
T 1yiz_A          232 FEHIRICTLPGMWERTITIGSAGKT-FS-LTGWKIGWAYGPEALLK  275 (429)
T ss_dssp             SCCCCGGGSTTTGGGEEEEEEHHHH-HT-CGGGCCEEEESCHHHHH
T ss_pred             CCCcChhhccCCcCceEEEecchhc-cC-CCCcceEEEEeCHHHHH
Confidence            1  122 232 35689999999999 88 558  999998876544

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.52  E-value=8.7e-14  Score=134.60  Aligned_cols=166  Identities=8%  Similarity=-0.019  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHc----CCCCC-CCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          158 EIQARNKVLKHC----GLPDD-EYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       158 le~AR~~IA~~L----ga~p~-ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..+.|+.+++++    |++.+ +.+|+||+|+|+|+++++.++ ..+|+.|+ ....|+.  +...++..|++++.+|.+
T Consensus        87 ~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~v~~~  163 (404)
T 2o1b_A           87 KEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV-INPGDYVLLPDPGYTD--YLAGVLLADGKPVPLNLE  163 (404)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCSS--HHHHHHHTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh-cCCCCEEEEcCCCchh--HHHHHHHCCCEEEEeccC
Confidence            456888888888    87521 127999999999999999987 46788854 4455552  223344569999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCC---ccCCCCC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGE---DRLNLAL  302 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~---~~LDLs~  302 (344)
                      ..+..++.++|++.+++     ++++|.++..+|  |.++|.+.   |. .|+++|+++++|.+|+. ..   .+.++..
T Consensus       164 ~~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~  237 (404)
T 2o1b_A          164 PPHYLPDWSKVDSQIID-----KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGA-FGFDAKNPSILA  237 (404)
T ss_dssp             TTTCCCCGGGSCHHHHH-----HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTT-CBSSSCCCCGGG
T ss_pred             cccCcCCHHHHHHhhcc-----CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCChhh
Confidence            53334678888888864     367888875565  99998643   33 35889999999999987 43   2333333


Q ss_pred             C----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          303 H----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       303 l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +    +.|+++.|++|+ ||.| |  +|++++++++.+
T Consensus       238 ~~~~~~~~i~~~s~sK~-~g~~-G~r~G~~~~~~~~~~  273 (404)
T 2o1b_A          238 SENGKDVAIEIYSLSKG-YNMS-GFRVGFAVGNKDMIQ  273 (404)
T ss_dssp             STTHHHHEEEEEESTTT-TTCG-GGCCEEEEECHHHHH
T ss_pred             cCCCCCCEEEEEecchh-ccCc-hhheEeEecCHHHHH
Confidence            2    467999999999 8745 6  799998776544

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.52  E-value=2.9e-13  Score=129.18  Aligned_cols=170  Identities=15%  Similarity=0.100  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCCC-CeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC-
Q 035915          155 SIPEIQARNKVLKHCGLPDDE-YLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA-  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~e-y~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~-  231 (344)
                      ....++.++.+++++|++.+. .+|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.+ 
T Consensus        81 ~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~  157 (407)
T 3nra_A           81 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLDY  157 (407)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-CCTTCEEEEEESCCTH--HHHHHHHTTCEEEEEEBCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-CCCCCEEEEcCCcccc--hHHHHHHcCCEEEEeeccc
Confidence            345677888899999985211 27999999999999999987 67899865 4555552  334455679999999873 


Q ss_pred             ----CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCC----cc
Q 035915          232 ----WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGE----DR  297 (344)
Q Consensus       232 ----~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~----~~  297 (344)
                          ..+..++.++|++.+++     ++++|.+...+|  |.++|   ++.|. .|+++|+++++|.+|+. +.    ..
T Consensus       158 ~~~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~-~~~~g~~~  231 (407)
T 3nra_A          158 VSADETRAGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSR-LRYAGASY  231 (407)
T ss_dssp             CSSCCSSCCBCHHHHHHHHHT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-SBCTTCCC
T ss_pred             ccccCcCCCcCHHHHHHHHhh-----CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCC
Confidence                12467899999999875     366777776666  99999   55554 36889999999999985 32    12


Q ss_pred             CCCC-----CCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          298 LNLA-----LHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       298 LDLs-----~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ..+.     ..+.++++.|++|+ ||.| .++|+++.++++.+
T Consensus       232 ~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~  273 (407)
T 3nra_A          232 THLRAEAAVDAENVVTIMGPSKT-ESLSGYRLGVAFGSRAIIA  273 (407)
T ss_dssp             CCGGGCTTSCGGGEEEEECSSST-TCCGGGCCEEEEECHHHHH
T ss_pred             CChhhcCcccCCcEEEEeCcccc-cCCCeeeEEEEEcCHHHHH
Confidence            2222     23466999999999 8734 24798888765443

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.51  E-value=5.8e-13  Score=129.38  Aligned_cols=156  Identities=9%  Similarity=-0.011  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+.+.|+++++++|++    +|+||+|+|+|+++++.++.  +|++| +...+|+..  ...++..|++++.+|.+..+
T Consensus        52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~~~~~~~--~~~~~~~G~~~~~v~~~~~~  123 (424)
T 2po3_A           52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPSMTFAAT--PHALRWIGLTPVFADIDPDT  123 (424)
T ss_dssp             HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECCCccHHH--HHHHHHcCCEEEEEecCCCc
Confidence            46788999999999983    69999999999999999874  57875 466677632  22344579999999987545


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC--CcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR--PDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~--~DFvv~S  311 (344)
                      +.++.++|++.+++     ++++|.+.+ .+|...+++.|.+ |+++|+++++|++|+. |.. .+...++  +|++++|
T Consensus       124 ~~~d~~~l~~~i~~-----~~~~v~~~~-~tG~~~~l~~i~~la~~~~~~li~Dea~~~-g~~-~~~~~~~~~~di~~~S  195 (424)
T 2po3_A          124 GNLDPDQVAAAVTP-----RTSAVVGVH-LWGRPCAADQLRKVADEHGLRLYFDAAHAL-GCA-VDGRPAGSLGDAEVFS  195 (424)
T ss_dssp             SSBCHHHHGGGCCT-----TEEEEEEEC-GGGCCCCHHHHHHHHHHTTCEEEEECTTCT-TCE-ETTEETTSSSSEEEEE
T ss_pred             CCcCHHHHHHhhCc-----CCcEEEEEC-CCCCcCCHHHHHHHHHHcCCEEEEECcccc-CCe-ECCeecccccCEEEEe
Confidence            67899999988864     477777753 3599999987754 6999999999999998 765 3322222  6899999


Q ss_pred             cc--cCCCCCCCceEEEEEe
Q 035915          312 LD--NTQNAQPSKITCLLIR  329 (344)
Q Consensus       312 ~H--K~l~G~P~GiG~L~Vr  329 (344)
                      +|  |+ +++ -.+|+++.+
T Consensus       196 ~sk~K~-l~~-~~~G~~v~~  213 (424)
T 2po3_A          196 FHATKA-VNA-FEGGAVVTD  213 (424)
T ss_dssp             CCTTSS-SCC-SSCEEEEES
T ss_pred             CCCCCC-ccC-CCCeEEEeC
Confidence            88  88 773 356777776

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.51  E-value=1.9e-13  Score=129.89  Aligned_cols=166  Identities=10%  Similarity=0.008  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHc----CCCCCC-CeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          157 PEIQARNKVLKHC----GLPDDE-YLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       157 ~le~AR~~IA~~L----ga~p~e-y~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ...+.|+.+++++    |++.+. .+|+||+|+|+|+++++.++ ..+|+.|+. ...|+.  +...++..|++++.+|.
T Consensus        64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~p~y~~--~~~~~~~~g~~~~~~~~  140 (376)
T 2dou_A           64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL-TEPEDLLLLPEVAYPS--YFGAARVASLRTFLIPL  140 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHH--HHHHHHHTTCEEEEECB
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-cCCCCEEEECCCCcHh--HHHHHHHcCCEEEEeeC
Confidence            4578899999988    875221 26999999999999999887 567888654 444442  33344557999999987


Q ss_pred             CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc---c---C
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED---R---L  298 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~---~---L  298 (344)
                      + .+..++.++|++.+++     ++++|.++..+|  |.++|.+.+   . .|+++|+++++|.+|+. +..   +   +
T Consensus       141 ~-~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~  213 (376)
T 2dou_A          141 R-EDGLADLKAVPEGVWR-----EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVD-QVYEGEAPSPL  213 (376)
T ss_dssp             C-TTSSBCGGGSCHHHHH-----HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGG
T ss_pred             C-CCCCCCHHHHHHhhcc-----CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCChh
Confidence            3 2334778888888864     367888875555  999996443   3 35889999999999986 431   2   2


Q ss_pred             CC-CCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          299 NL-ALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       299 DL-s~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++ ...+.++++.|++|+ ||.| |  +|+++.++++.+
T Consensus       214 ~~~~~~~~~i~~~s~sK~-~~~~-G~r~G~~~~~~~~~~  250 (376)
T 2dou_A          214 ALPGAKERVVELFSLSKS-YNLA-GFRLGFALGSEEALA  250 (376)
T ss_dssp             GSTTGGGTEEEEEEHHHH-HTCG-GGCCEEEEECHHHHH
T ss_pred             hcCCCCCcEEEEecchhh-cCCh-hheeEEEecCHHHHH
Confidence            22 123568999999999 8744 6  799988776543

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.51  E-value=3e-13  Score=134.56  Aligned_cols=158  Identities=11%  Similarity=-0.054  Sum_probs=120.8

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +......++.++++|+++|++    ..++++|+|+|+.+++.++ +++||+|+ ....|+  ...+...++..|++++.+
T Consensus        78 r~~~p~~~~le~~lA~l~g~~----~~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v  152 (430)
T 3ri6_A           78 RSSNPTVEDLEQRLKNLTGAL----GVLALGSGMAAISTAILTL-ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV  152 (430)
T ss_dssp             --CCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence            334456788999999999984    2566667789999988877 67899865 555565  233443556789999998


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      |.+      +.++|++++++     ++++|.+...+|  |.+.|++.|.+ |+++|+++++|.+++. |.. .+...+++
T Consensus       153 ~~~------d~~~l~~ai~~-----~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~-~~~-~~~~~~g~  219 (430)
T 3ri6_A          153 DVM------DSLAVEHACDE-----TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTP-PYL-LEAKRLGV  219 (430)
T ss_dssp             CTT------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSC-TTT-CCGGGGTC
T ss_pred             CCC------CHHHHHHhhCC-----CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-ccc-CChHHcCC
Confidence            865      56789888865     478888887776  99999988865 6999999999999998 765 45556789


Q ss_pred             cEEEEccccCCCCCCC-ceEEEEE
Q 035915          306 DFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                      |+++.|++|+ +|+|. ++|.+++
T Consensus       220 div~~S~sK~-l~g~g~~~gG~vv  242 (430)
T 3ri6_A          220 DIEVLSSTKF-ISGGGTSVGGVLI  242 (430)
T ss_dssp             SEEEEECCCE-EETTEEECCEEEE
T ss_pred             EEEEECCccc-ccCCCCceEEEEE
Confidence            9999999999 88662 3666666

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.51  E-value=8.4e-14  Score=147.69  Aligned_cols=170  Identities=11%  Similarity=0.070  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      .+.++|+.+|+++|++.   .++||+|+|+|+++++.++ +.+||.|+ ....|.+.. ...+...|+++++++.+..  
T Consensus       174 ~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al-~~pGD~VLv~~~~H~S~~-~~~~~l~Ga~~v~v~~~~~~~  248 (730)
T 1c4k_A          174 PAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKSVY-NSALAMAGGRPVYLQTNRNPY  248 (730)
T ss_dssp             HHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHHHH-HHHTTTTCCEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHh-cCCCCEEEEcCCchHHHH-HHHHHHCCCEEEEEeCCcccc
Confidence            57899999999999962   5788888889999998887 57899865 555665321 1214556999888765421  


Q ss_pred             --CCccCHHHH-----HHHhhhcC-C---CCCe-eEEEEeCcc-ccccccHHHHHH-HHhCCcEEEecccccCcC-----
Q 035915          234 --DLRIKGSQL-----SQYFRRKC-K---HTPK-GLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDATALVVG-----  294 (344)
Q Consensus       234 --~g~i~~~~L-----~~~l~~~~-~---~~~t-~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G-----  294 (344)
                        .+.++.++|     +++++++. +   ..++ +++.++.-+ .|.++|++.|.+ |+++|+++++|++|+. +     
T Consensus       249 ~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~-~~~f~~  327 (730)
T 1c4k_A          249 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVG-YEQFIP  327 (730)
T ss_dssp             CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCC-GGGSSG
T ss_pred             CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEccccc-ccccCc
Confidence              134677777     88876420 0   0011 677777543 399999988865 6999999999999974 2     


Q ss_pred             ----CccCCCCCCCCc----EEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          295 ----EDRLNLALHRPD----FVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       295 ----~~~LDLs~l~~D----Fvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                          ..++++..+++|    ++++|+||+ +++|.+.|+++++++.+
T Consensus       328 ~~~g~~~l~~~~~g~D~~~~iv~~S~hK~-L~g~~~gg~I~v~~~~l  373 (730)
T 1c4k_A          328 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQ-QAGFSQTSQIHKKDSHI  373 (730)
T ss_dssp             GGGGGCTTSCCCCCTTSCEEEEEECHHHH-SSCCTTCEEEEEECGGG
T ss_pred             ccCCcCcccccccCCCCCCEEEEECCCCC-CCCCCCEEEEEecchhh
Confidence                123555556888    999999999 88898899999988654

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.51  E-value=1.2e-13  Score=132.39  Aligned_cols=163  Identities=14%  Similarity=0.071  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |+  +++  +|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|++++.+|.
T Consensus        77 ~~~l~~~la~~~~~~~g~~~~~~--~v~~t~g~t~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~v~~  151 (407)
T 2zc0_A           77 IPELREELAAFLKKYDHLEVSPE--NIVITIGGTGALDLLGRVL-IDPGDVVITENPSYIN--TLLAFEQLGAKIEGVPV  151 (407)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHTTTCEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcc--eEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHH--HHHHHHHcCCEEEEccc
Confidence            466888888888    84  444  7999999999999999988 56888865 3334442  33345567999999988


Q ss_pred             CCCCCccCHHHHHHHhh----hcCCCCCeeEE-EEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCcCCc---
Q 035915          231 AWLDLRIKGSQLSQYFR----RKCKHTPKGLF-SYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVVGED---  296 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~----~~~~~~~t~LV-a~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~G~~---  296 (344)
                      +. ++ ++.++|++.++    +.   .++++| .++..+|  |.++|++   .|. .|+++|+++++|.+|+. +..   
T Consensus       152 ~~-~~-~d~~~l~~~l~~~~~~~---~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~  225 (407)
T 2zc0_A          152 DN-DG-MRVDLLEEKIKELKAKG---QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNF-MRYEGG  225 (407)
T ss_dssp             ET-TE-ECHHHHHHHHHHHHHTT---CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-SBSSCS
T ss_pred             CC-CC-CCHHHHHHHHHhhhccc---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcc-cccCCC
Confidence            65 34 89999999886    31   146776 5666555  9999996   443 35889999999999987 532   


Q ss_pred             -cCCCCCC---CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          297 -RLNLALH---RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       297 -~LDLs~l---~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       ..++..+   +.++++.|++|+ || | |  +|++++++++.+
T Consensus       226 ~~~~~~~~~~~~~~i~~~s~sK~-~~-~-G~r~G~~~~~~~~~~  266 (407)
T 2zc0_A          226 DIVPLKALDNEGRVIVAGTLSKV-LG-T-GFRIGWIIAEGEILK  266 (407)
T ss_dssp             SCCCGGGGCSSCCEEEEEESTTT-TC-T-TSCCEEEECCHHHHH
T ss_pred             CCCChhhcCCCCCEEEEcccccc-cC-C-CcceEEEecCHHHHH
Confidence             1233322   456889999999 88 7 5  899998765543

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.50  E-value=6.4e-14  Score=133.99  Aligned_cols=160  Identities=12%  Similarity=0.001  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHH--HHHH-HHcCCcEEEEEeCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDY--VREF-ASFKESKVILAPEAW  232 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~--ir~l-a~~~G~kV~~vp~~~  232 (344)
                      ..+.+|+.+++++|++++  .|+||+| |+|+.+++.++ +++|+.++ ....|+...  ...+ ....++.+..++.+.
T Consensus        77 ~~~~~~~~la~~~~~~~~--~v~~~sG-s~a~~~a~~~~-~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  152 (420)
T 3gbx_A           77 VEQLAIDRAKELFGADYA--NVQPHSG-SQANFAVYTAL-LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE  152 (420)
T ss_dssp             HHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH-CCTTCEEEEEEEC------------CHHHHSEEEEEEECT
T ss_pred             HHHHHHHHHHHHhCCCCc--eeEecCc-HHHHHHHHHHh-cCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCc
Confidence            457789999999999754  4556655 88999888877 57899864 455555211  1111 111134444556553


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc-----cCCCCCCCCc
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED-----RLNLALHRPD  306 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-----~LDLs~l~~D  306 (344)
                       ++.++.++|++++++.    ++++|.+...+||+..|++.|.+ |+++|+++++|.+|+. |..     +..+.  .+|
T Consensus       153 -~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~--~~d  224 (420)
T 3gbx_A          153 -SGKIDYDEMAKLAKEH----KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVA-GLIAAGVYPNPVP--HAH  224 (420)
T ss_dssp             -TCSCCHHHHHHHHHHH----CCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTH-HHHHTTSSCCSTT--TSS
T ss_pred             -cCCcCHHHHHHHHHhc----CCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcch-hceecccCCcccc--cCC
Confidence             5678999999999763    36788776555688999987765 6999999999999987 654     33333  489


Q ss_pred             EEEEccccCCCCCCCceEEEEEeC
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ++++|+||+ |++|.| |+++.++
T Consensus       225 i~~~s~sK~-~~g~~g-g~~~~~~  246 (420)
T 3gbx_A          225 VVTTTTHKT-LAGPRG-GLILAKG  246 (420)
T ss_dssp             EEEEESSGG-GCSCSC-EEEEESS
T ss_pred             EEEeecccC-CCCCCc-eEEEEcC
Confidence            999999999 867986 8888876

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.49  E-value=1e-12  Score=125.58  Aligned_cols=161  Identities=11%  Similarity=0.029  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |  ++++  +|+||+|+|+|+++++.++ ..+|+.|+. ...|+.  +...++..|++++.+|.
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~--~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~  142 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTD--WIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP--FFMAIKNQERKIIECEL  142 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH--HHHHHHTTTCEEEECCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCChh--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHh--HHHHHHHcCCEEEeccc
Confidence            456777777764    7  5544  7999999999999999987 467888654 444442  23345567999998887


Q ss_pred             CCCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCC----ccC
Q 035915          231 AWLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGE----DRL  298 (344)
Q Consensus       231 ~~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~----~~L  298 (344)
                      ++.++  .++.++|++.++.    .++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. ..    ...
T Consensus       143 ~~~~g~~~~d~~~l~~~l~~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~  217 (399)
T 1c7n_A          143 LEKDGYYTIDFQKLEKLSKD----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFD-LIMPGYEHT  217 (399)
T ss_dssp             EEETTEEECCHHHHHHHHTC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTT-CBCTTCCCC
T ss_pred             ccCCCCEEEcHHHHHHHhcc----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCcc
Confidence            53222  4789999998863    1478888877666  99999   65554 46899999999999986 32    233


Q ss_pred             CCCCC-----CCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          299 NLALH-----RPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       299 DLs~l-----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++..+     +.++++.|++|+ ||.| |  +|++++++
T Consensus       218 ~~~~~~~~~~~~~i~~~s~sK~-~~~~-G~r~G~~~~~~  254 (399)
T 1c7n_A          218 VFQSIDEQLADKTITFTAPSKT-FNIA-GMGMSNIIIKN  254 (399)
T ss_dssp             CGGGSCHHHHTTEEEEECSHHH-HTCG-GGCCEEEECCC
T ss_pred             cHHHcCccccCcEEEEEeChhh-cccc-chheEEEEECC
Confidence            44433     456899999999 8744 6  79999874

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.49  E-value=3.1e-14  Score=136.48  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+.+++++|++++  +|+||+|+|+|+++++.++ ..+|+.|+. ...|+.  +...++..|++++.+|.+. ++ 
T Consensus        76 ~~~l~~~la~~~g~~~~--~v~~~~g~~~al~~~~~~~-~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~~~~~~-~~-  148 (397)
T 2zyj_A           76 YAPLRAFVAEWIGVRPE--EVLITTGSQQALDLVGKVF-LDEGSPVLLEAPSYMG--AIQAFRLQGPRFLTVPAGE-EG-  148 (397)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHTTCCEEEEEEEET-TE-
T ss_pred             CHHHHHHHHHHhCCChh--hEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH--HHHHHHHcCCEEEecCcCC-CC-
Confidence            46789999999998765  7999999999999999887 467888653 444442  3344556799999998865 34 


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEE-EEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCcCC----ccCCCCCCCC
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLF-SYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVVGE----DRLNLALHRP  305 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LV-a~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~G~----~~LDLs~l~~  305 (344)
                      ++.++|++.+++.    ++++| .++..+|  |.++|.+   .|. .|+++|+++++|.+|+. +.    .+.++..++.
T Consensus       149 ~d~~~l~~~l~~~----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~  223 (397)
T 2zyj_A          149 PDLDALEEVLKRE----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELAR  223 (397)
T ss_dssp             ECHHHHHHHHHHC----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCSSCCCCCHHHHHH
T ss_pred             CCHHHHHHHHhhc----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCccc-ccCCCCCCCchhhhCc
Confidence            8999999988751    35565 5565555  9999986   333 35889999999999997 43    2234444433


Q ss_pred             c------EEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          306 D------FVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       306 D------Fvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |      +++.|+||+ || | .++|++++++++.+
T Consensus       224 ~~~~~~~i~~~s~sK~-~~-~G~r~G~~~~~~~~~~  257 (397)
T 2zyj_A          224 EAGYPGVIYLGSFSKV-LS-PGLRVAFAVAHPEALQ  257 (397)
T ss_dssp             HHTCCCEEEEEESTTT-TC-GGGCCEEEECCHHHHH
T ss_pred             ccCCCeEEEEeccccc-cc-ccceeEEEecCHHHHH
Confidence            3      899999999 88 6 24799998865543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.49  E-value=3.7e-13  Score=127.10  Aligned_cols=156  Identities=10%  Similarity=0.055  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.++++++      ++++  +|+||+|+|+|+++++.++ ..+|+.++ ....|+.  +...++..|++++.+|.+
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~--~i~~t~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~  135 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPE--WIFPIPDVVRGLYIAIDHF-TPAQSKVIVPTPAYPP--FFHLLSATQREGIFIDAT  135 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTTCCEEEEESCCTH--HHHHHHHHTCCEEEEECT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHH--HEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCcHh--HHHHHHHcCCEEEEccCC
Confidence            457888888877      6665  7999999999999999887 56788854 4555553  233344569999999987


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---C-CccCCCC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---G-EDRLNLA  301 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G-~~~LDLs  301 (344)
                      ..   ++.++|++.++++     ++++.++..+|  |.++|.+.+.    .|+++|+++++|.+|+..   | ....++.
T Consensus       136 ~~---~d~~~l~~~l~~~-----~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  207 (377)
T 3fdb_A          136 GG---INLHDVEKGFQAG-----ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGV  207 (377)
T ss_dssp             TS---CCHHHHHHHHHTT-----CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGS
T ss_pred             CC---CCHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHH
Confidence            52   8999999999752     56777777666  9999875543    258899999999999861   1 1223333


Q ss_pred             C---CCCcEEEEccccCCCCCCCc--eEEEEEe
Q 035915          302 L---HRPDFVLCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       302 ~---l~~DFvv~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      .   .+.++++.|++|+ ||.| |  +|++++.
T Consensus       208 ~~~~~~~~i~~~s~sK~-~g~~-G~r~G~~~~~  238 (377)
T 3fdb_A          208 SDTAASVCITITAPSKA-WNIA-GLKCAQIIFS  238 (377)
T ss_dssp             CHHHHHHEEEEECSTTT-TTCG-GGCCEEEECC
T ss_pred             HccCCCcEEEEEeChHh-ccCc-chhheEEEeC
Confidence            2   2345999999999 8744 5  7877763

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.49  E-value=1.9e-12  Score=123.48  Aligned_cols=160  Identities=8%  Similarity=-0.015  Sum_probs=114.8

Q ss_pred             HHH-HHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQ-ARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~-AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+ .|+.+++++    |  ++++  +|+||+|+|+|+++++.++ ..+|+.|+ ....|+.  +...++..|++++.+|
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~--~~~~~~~~g~~~~~v~  139 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQ--TVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDA--FYKAIEGNQRTVMPVA  139 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGG--GEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHH--HHHHHHHTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHH--HHHHHHHCCCEEEEee
Confidence            344 777777766    6  5554  7999999999999999988 46788865 3444442  3334455799999999


Q ss_pred             CCCCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCC----cc
Q 035915          230 EAWLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGE----DR  297 (344)
Q Consensus       230 ~~~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~----~~  297 (344)
                      .+..++  .++.++|++.+++.    ++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. ..    ..
T Consensus       140 ~~~~~~~~~~d~~~l~~~l~~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~  214 (390)
T 1d2f_A          140 LEKQADGWFCDMGKLEAVLAKP----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMD-MVWGEQPH  214 (390)
T ss_dssp             CEECSSSEECCHHHHHHHHTST----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTT-CBCSSSCC
T ss_pred             cccCCCccccCHHHHHHHhccC----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCC
Confidence            864322  47899999988641    477887776665  99999   55554 46899999999999986 32    23


Q ss_pred             CCCCCCCC---cEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          298 LNLALHRP---DFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       298 LDLs~l~~---DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      .++..+.+   |. +.|++|+ || +.|  +|++++++
T Consensus       215 ~~~~~~~~~~~d~-~~s~sK~-~~-~~G~r~G~~~~~~  249 (390)
T 1d2f_A          215 IPWSNVARGDWAL-LTSGSKS-FN-IPALTGAYGIIEN  249 (390)
T ss_dssp             CCGGGTCCSSEEE-EECSHHH-HT-CGGGCCEEEEECS
T ss_pred             cCHHHcchhhHhh-ccCccHh-hc-ccChhheEEEECC
Confidence            34444433   77 9999999 87 346  69999863

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.48  E-value=1.5e-13  Score=133.37  Aligned_cols=167  Identities=11%  Similarity=0.005  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHc-----CCCCCCCe---EEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHc-CCcEEEE
Q 035915          158 EIQARNKVLKHC-----GLPDDEYL---VLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASF-KESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~L-----ga~p~ey~---VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~-~G~kV~~  227 (344)
                      ..+.|+.||+++     +++++  +   |+||+|+|+|+++++.++ +.+||.|+ ....|+.  +...++. .|++++.
T Consensus        90 ~~~lr~~ia~~~~~~~~~~~~~--~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~y~~--~~~~~~~~~g~~~~~  164 (430)
T 2x5f_A           90 IEELRDLWQQKMLRDNPELSID--NMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEHNWGN--YKLVFNTRNGANLQT  164 (430)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCGG--GBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH--HHHHHTTTTCCEEEE
T ss_pred             CHHHHHHHHHHHhccCcccCCC--ccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCCcCcc--HHHHHHHhcCCeEEE
Confidence            466889999999     88765  6   999999999999999988 57899865 4444543  3344556 7999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHh-----CCcEEEecccccCcCC-
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHR-----NSWHVLLDATALVVGE-  295 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~-----~g~~vlvDAaQa~~G~-  295 (344)
                      +|.+..+..++.++|++.+++.  ..+++++.+...+|  |.++|   ++.|. .|++     +|+++++|.+++. .. 
T Consensus       165 ~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~-~~~  241 (430)
T 2x5f_A          165 YPIFDKDGHYTTDSLVEALQSY--NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG-LFY  241 (430)
T ss_dssp             ECCBCTTSCBCSHHHHHHHHHC--CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT-CBC
T ss_pred             EeccCccCCcCHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc-ccC
Confidence            9986533468889999988752  12477888776666  99999   44443 4688     9999999999985 31 


Q ss_pred             -----ccC--CCCC-CCC---cEEEEccccCCCCCCCc--eEEEEE---eCCCcc
Q 035915          296 -----DRL--NLAL-HRP---DFVLCNLDNTQNAQPSK--ITCLLI---RKKSFD  334 (344)
Q Consensus       296 -----~~L--DLs~-l~~---DFvv~S~HK~l~G~P~G--iG~L~V---r~~~~~  334 (344)
                           .++  ++.. .+.   ++++.|++|+ ||.| |  +|++++   ++++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~-G~riG~~~~~~~~~~~~~  294 (430)
T 2x5f_A          242 EDVYTQSLFTALTNLHSNAILPIRLDGATKE-FFAW-GFRVGFMTFGTSDQTTKE  294 (430)
T ss_dssp             SSSCCSCHHHHHHTTCCTTEEEEEEEEHHHH-TTCG-GGCCEEEEEBCCCHHHHH
T ss_pred             CcccchHHHHHHhhccCCcceEEEEEecccC-CCCC-CCCeEEEEEecCCHHHHH
Confidence                 121  3323 334   6889999999 8745 7  799999   665443

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.48  E-value=7.6e-14  Score=138.91  Aligned_cols=167  Identities=7%  Similarity=-0.092  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcC--CcCH--HHHH------HHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTII--GEEL--DYVR------EFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~--eH~~--~~ir------~la~~~G~kV~~  227 (344)
                      .++.++.+++++|++.....++|+ |+|+|+.+++.++ +++||++++..  .|..  ..++      ..++..|++++.
T Consensus        67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~  144 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGI-LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA  144 (431)
T ss_dssp             HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred             HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence            577888999999996432123366 6699999999887 67899977554  3442  1111      223446999999


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC----ccc--cccccHHHHHH-HHh--CCcEEEecccccCcCCccC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA----DIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGEDRL  298 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a----vSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~~~L  298 (344)
                      +|.++ ++.++.++|++++++     ++++|.+..    .+|  |.+.+++.|.+ |++  +|+++++|.+|+. +....
T Consensus       145 v~~~~-~~~~d~e~l~~~l~~-----~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~-~~~~~  217 (431)
T 3ht4_A          145 VPLTE-GGLVDFEAVAAAIHS-----NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE-FIEEQ  217 (431)
T ss_dssp             CCBCT-TSSBCHHHHHHHCCT-----TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT-TSSSC
T ss_pred             eCCCC-CCCcCHHHHHhhcCC-----CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChh-hccCC
Confidence            99876 478999999999875     478888875    222  77888876654 688  9999999999998 76444


Q ss_pred             CCCCCCCcEEEEccccCCCCC---CCceEEEEEeCCCccc
Q 035915          299 NLALHRPDFVLCNLDNTQNAQ---PSKITCLLIRKKSFDT  335 (344)
Q Consensus       299 DLs~l~~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~~  335 (344)
                      +...+++|+++.|++|+ +|+   |.| |+++.++++.+.
T Consensus       218 ~~~~~g~Di~~~S~sK~-lgg~~~~~G-G~v~~~~~li~~  255 (431)
T 3ht4_A          218 EPCHVGADLMAGSLIKN-PGGGIVKTG-GYIVGKEQYVEA  255 (431)
T ss_dssp             CGGGTTCSEEEEETTSG-GGTTTCSSC-EEEEECHHHHHH
T ss_pred             CccccCCeEEEcCcccc-CCCCCCCce-EEEEecHHHHHH
Confidence            44456899999999998 665   778 999988765443

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.48  E-value=3.3e-14  Score=135.71  Aligned_cols=164  Identities=13%  Similarity=-0.018  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH--HHHHHHHcCCc--EEEEEeCCCC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELD--YVREFASFKES--KVILAPEAWL  233 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~--~ir~la~~~G~--kV~~vp~~~~  233 (344)
                      +.+|+.+++++|+++   ..+|+.++|+|+++++.++ +.+|+.++ ....|+..  .+.. ++..|.  ....++.+..
T Consensus        72 ~~ar~~la~~~g~~~---~~i~~~sGt~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~  146 (407)
T 2dkj_A           72 SLAIERAKALFGAAW---ANVQPHSGSQANMAVYMAL-MEPGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVRPD  146 (407)
T ss_dssp             HHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCCTT
T ss_pred             HHHHHHHHHHhCCCc---ceEEecchHHHHHHHHHHh-cCCCCEEEEecccccCccchHHH-HHhcCceEEEEecCCCcc
Confidence            458999999999974   3455555677999999887 67898864 55555521  0111 111244  3334443322


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC---CCCcEEE
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL---HRPDFVL  309 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~---l~~DFvv  309 (344)
                      ++.++.++|++.+++.    ++++|.++..+||...|++.|.+ |+++|+++++|.+|+. |....+...   -.+|+++
T Consensus       147 ~~~~d~~~l~~~l~~~----~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~~~~~~~~~~di~~  221 (407)
T 2dkj_A          147 TELIDLEEVRRLALEH----RPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFA-GLVAAGLHPNPLPYAHVVT  221 (407)
T ss_dssp             TSSCCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHTTCSCCCTTTCSEEE
T ss_pred             cCccCHHHHHHHHhhc----CCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccc-cccccCccCCccccccEEE
Confidence            4578999999998742    36777775455799999987764 6899999999999987 654433221   1389999


Q ss_pred             EccccCCCCCCCceEEEEEe-CCCcc
Q 035915          310 CNLDNTQNAQPSKITCLLIR-KKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~GiG~L~Vr-~~~~~  334 (344)
                      +|+||+ +++|.| |+++++ +++.+
T Consensus       222 ~s~sK~-l~g~~~-G~~~~~~~~~~~  245 (407)
T 2dkj_A          222 STTHKT-LRGPRG-GLILSNDPELGK  245 (407)
T ss_dssp             EESSGG-GCCCSC-EEEEESCHHHHH
T ss_pred             Eecccc-CCCCCc-eEEEECCHHHHH
Confidence            999999 767876 999998 45543

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.48  E-value=6e-13  Score=127.04  Aligned_cols=163  Identities=12%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.|+++++      ++++  +|+||+|+|+|+++++.++ ..+|+.++ ....|+.  +...++..|++++.+|.
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~v~~  144 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPG--RVVITPGSSGGFLLAFTAL-FDSGDRVGIGAPGYPS--YRQILRALGLVPVDLPT  144 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHH--HEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCcc--HHHHHHHcCCEEEEeec
Confidence            4567888888774      5555  7999999999999999987 56899865 3444442  33445667999999998


Q ss_pred             CCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HHH-HHHhCCcEEEecccccCc--CCccCCCC
Q 035915          231 AWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALVV--GEDRLNLA  301 (344)
Q Consensus       231 ~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~--G~~~LDLs  301 (344)
                      +..+ ..++.++|++.        ++++|.++..+|  |.++|.+   .|. .|+++|+++++|.+|+..  +..+..+.
T Consensus       145 ~~~~~~~~d~~~l~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~  216 (391)
T 3h14_A          145 APENRLQPVPADFAGL--------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTAL  216 (391)
T ss_dssp             CGGGTTSCCHHHHTTS--------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGG
T ss_pred             CcccCCCCCHHHHHhc--------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChh
Confidence            7432 24688877654        256777776666  9999954   443 358899999999999841  11233332


Q ss_pred             C-CCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          302 L-HRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       302 ~-l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      . .+.++++.|++|+ ||.| -++|+++++++..+
T Consensus       217 ~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~  250 (391)
T 3h14_A          217 ELTDECYVINSFSKY-FSMTGWRVGWMVVPEDQVR  250 (391)
T ss_dssp             GTCSSSEEEEESSST-TCCTTSCCEEEECCGGGHH
T ss_pred             hcCCCEEEEEechhc-cCCccceeEEEEeCHHHHH
Confidence            2 2466888999999 8733 24788888776544

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.48  E-value=1e-13  Score=133.42  Aligned_cols=166  Identities=10%  Similarity=0.069  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.++++++      ++++ .+|+||+|+|+|+++++.++ +.+|+.|+ ....|+.  +...++..|.+++.+|.+
T Consensus        70 ~~lr~~la~~~~~~~g~~~~~~-~~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~~  145 (422)
T 3fvs_A           70 PPLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDC--YEPMTMMAGGRPVFVSLK  145 (422)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCHH-HHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECB
T ss_pred             HHHHHHHHHHHHHhhCCCCCCC-CcEEEECChHHHHHHHHHHH-cCCCCEEEEcCCCchh--hHHHHHHcCCEEEEEecc
Confidence            456777777665      5441 27999999999999999987 57899754 4555552  233445579999999886


Q ss_pred             C-----------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc-
Q 035915          232 W-----------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV-  293 (344)
Q Consensus       232 ~-----------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~-  293 (344)
                      .           .+..++.++|++.+++     ++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+.. 
T Consensus       146 ~~~~~~G~~~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  220 (422)
T 3fvs_A          146 PGPIQNGELGSSSNWQLDPMELAGKFTS-----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMV  220 (422)
T ss_dssp             CCCCCSSSCCBGGGSBCCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred             cccccccccccccCCCCCHHHHHhhcCC-----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhc
Confidence            4           1225788999888764     478888877666  99996   54454 368899999999999851 


Q ss_pred             --CCccCCCCCC----CCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          294 --GEDRLNLALH----RPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       294 --G~~~LDLs~l----~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                        |..+.++..+    +.++++.|++|+ ||.| -++|+++++++..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~g~~G~r~G~~~~~~~~~~  267 (422)
T 3fvs_A          221 YDGHQHISIASLPGMWERTLTIGSAGKT-FSATGWKVGWVLGPDHIMK  267 (422)
T ss_dssp             CTTCCCCCGGGSTTTGGGEEEEEEHHHH-HTCGGGCCEEEECCHHHHH
T ss_pred             cCCCCCCChhhcccccCcEEEEecchhc-cCCccceEEEEEeCHHHHH
Confidence              2223343332    445999999999 8744 13899888765443

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=3.1e-13  Score=127.86  Aligned_cols=161  Identities=10%  Similarity=0.029  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-C-C---CCC-CeEE-EcCCcC--HHHHHHHHHc----CC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-P-F---FRG-NFYM-TIIGEE--LDYVREFASF----KE  222 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~-~---~~G-d~iv-S~~eH~--~~~ir~la~~----~G  222 (344)
                      ....+.|+.+++++|+ ++  +|+||+|+|+|+++++... . .   .+| ++++ ....+|  ...+..+...    .|
T Consensus        70 ~~~~~l~~~la~~~g~-~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~  146 (375)
T 2eh6_A           70 PWQEELAHKLVKHFWT-EG--KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKG  146 (375)
T ss_dssp             HHHHHHHHHHHHTSSS-CE--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTT
T ss_pred             HHHHHHHHHHHhhcCC-CC--eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCC
Confidence            3467889999999998 34  7999999999999887642 1 1   457 7754 455544  2222222110    12


Q ss_pred             cE-----EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEecccc
Q 035915          223 SK-----VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       223 ~k-----V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                      ..     +..+|.      .+.++|++.+++     ++++|.+...+|  |.++|    ++.|.+ |+++|+++++|.+|
T Consensus       147 ~~~~~~~~~~~~~------~d~~~l~~~l~~-----~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~  215 (375)
T 2eh6_A          147 FEPLVPGFSYAKL------NDIDSVYKLLDE-----ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQ  215 (375)
T ss_dssp             TCSCCSSEEEECT------TCHHHHHTTCCT-----TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CCCCCCCceeCCC------chHHHHHHHhcC-----CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc
Confidence            22     444442      367888887764     478888877665  99988    877754 68999999999999


Q ss_pred             c-CcCCcc--CCCCCCC--CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          291 L-VVGEDR--LNLALHR--PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       291 a-~~G~~~--LDLs~l~--~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      + + |...  +++..++  +|++++|  |+ |+++.++|++++++++.+
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~d~~s~S--K~-~~~g~~~G~~~~~~~~~~  260 (375)
T 2eh6_A          216 TGI-GRTGEFYAYQHFNLKPDVIALA--KG-LGGGVPIGAILAREEVAQ  260 (375)
T ss_dssp             TTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTTSCCEEEEEEHHHHT
T ss_pred             cCC-CCCCcchhhhhcCCCCCEEEEc--cc-ccCCCCeEEEEEcHHHHh
Confidence            9 7 6543  4455555  9999988  88 776778999999876544

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.46  E-value=3.5e-13  Score=130.67  Aligned_cols=165  Identities=10%  Similarity=0.044  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      ..+.|+.+|+++|        ++++  .|+||+|+|+++.+++.++ ..+|+.|+ ....|+.. ...++...|++++.+
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~--~i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p~y~~~-~~~~~~~~g~~~~~v  160 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPAF-NRDLRWRTGVQLIPI  160 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTTH-HHHTTTTTCCEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChh--hEEEccChHHHHHHHHHHh-CCCCCeEEEccCCCcch-HHHHHHhcCCEEEEe
Confidence            4568888888887        6665  6999999999999999887 46888865 45555521 222334569999999


Q ss_pred             eCCCC-CCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCc----
Q 035915          229 PEAWL-DLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGED----  296 (344)
Q Consensus       229 p~~~~-~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~----  296 (344)
                      |.+.. +..++.++|++.++... ...++++|.++..+|  |.++|   ++.|. .|+++|+++++|.+|+. ...    
T Consensus       161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~~  239 (428)
T 1iay_A          161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA-TVFDTPQ  239 (428)
T ss_dssp             CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG-GCCSSSC
T ss_pred             ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccc-cccCCCC
Confidence            88642 23578999988886310 112478777776665  99999   65554 46889999999999985 321    


Q ss_pred             cCCCCC---------CCCc--EEEEccccCCCCCCCc--eEEEEEe
Q 035915          297 RLNLAL---------HRPD--FVLCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       297 ~LDLs~---------l~~D--Fvv~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      ..++..         +++|  +++.|+||+ ||.| |  +|++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~-~g~~-Glr~G~~~~~  283 (428)
T 1iay_A          240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKD-MGLP-GFRVGIIYSF  283 (428)
T ss_dssp             CCCHHHHHTSGGGTTSCTTSEEEEEESTTT-SSCG-GGCEEEEEES
T ss_pred             ccCHHHhccccccccCCCCcEEEEecchhh-cCCC-CceEEEEEeC
Confidence            122211         2278  899999999 8745 6  5999984

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.46  E-value=4.1e-13  Score=128.58  Aligned_cols=163  Identities=11%  Similarity=-0.031  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH---HHHHHHHHcCCcEEEEEeCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL---DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~---~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ..+.+|+.+++++|+++   ..++|+|+|+|+.+++.++ +.+||.++ ....|+.   ..........++++..++.+.
T Consensus        79 ~~~~a~~~~~~~~~~~~---~~v~~~~Gs~a~~~al~~~-~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  154 (425)
T 3ecd_A           79 VEALAIERVKRLFNAGH---ANVQPHSGAQANGAVMLAL-AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR  154 (425)
T ss_dssp             HHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECC------------------CEEEEECCCT
T ss_pred             HHHHHHHHHHHHhCCCC---ceeecCchHHHHHHHHHHc-cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc
Confidence            45668899999999863   3467899999999998887 67899865 5555653   111110111234555666654


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCC--CC-CCCcEE
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNL--AL-HRPDFV  308 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL--s~-l~~DFv  308 (344)
                      .++.++.++|++.++..    ++++|.+...+||...+++.|.+ |+++|+++++|.+|+. |...-+.  .. ..+|++
T Consensus       155 ~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-g~~~~~~~~~~~~~~di~  229 (425)
T 3ecd_A          155 DTMLIDYDQVEALAQQH----KPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIA-GVIAAGRHANPVEHAHVV  229 (425)
T ss_dssp             TTSSCCHHHHHHHHHHH----CCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGH-HHHHTTSSCCGGGTCSEE
T ss_pred             ccCccCHHHHHHHHhhc----CCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChH-hhhhcccccCchhcCcEE
Confidence            44678999999998742    36777777555799999987765 6999999999999977 6542111  11 137999


Q ss_pred             EEccccCCCCCCCceEEEEEeC
Q 035915          309 LCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       309 v~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ++|+||+ |++|. .|+++.++
T Consensus       230 ~~s~sK~-l~g~~-~g~~~~~~  249 (425)
T 3ecd_A          230 TSTTHKT-LRGPR-GGFVLTND  249 (425)
T ss_dssp             EEESSGG-GCCCS-CEEEEESC
T ss_pred             EecCCcc-cCCCC-cEEEEeCC
Confidence            9999999 77786 48888774

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.46  E-value=5.3e-14  Score=136.83  Aligned_cols=169  Identities=9%  Similarity=0.002  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC--------------eEEE--cCCcC-H-HH
Q 035915          158 EIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN--------------FYMT--IIGEE-L-DY  213 (344)
Q Consensus       158 le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd--------------~ivS--~~eH~-~-~~  213 (344)
                      +.+.|++||+++      +++++  +|+||+|+|+|+++++.++ ..+|+              .++.  ..+|+ . ..
T Consensus        85 ~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~  161 (444)
T 3if2_A           85 DSAFIDALVGFFNRHYDWNLTSE--NIALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV  161 (444)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred             CHHHHHHHHHHHHhhcCCCCCHH--HEEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccchhhc
Confidence            578999999998      66766  7999999999999999988 45666              5543  33433 1 11


Q ss_pred             HH--HHHHcCCcEEEEEeCCCCCC----ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCC
Q 035915          214 VR--EFASFKESKVILAPEAWLDL----RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNS  281 (344)
Q Consensus       214 ir--~la~~~G~kV~~vp~~~~~g----~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g  281 (344)
                      +.  ......|.++..+|.+..++    .++.++|++++..-  ..++++|.++..+|  |.++|.   +.|. .|+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~  239 (444)
T 3if2_A          162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK--EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYD  239 (444)
T ss_dssp             CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH--TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred             ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhc--CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence            10  01234578888888764222    57899998873210  02578888876666  999994   4443 368999


Q ss_pred             cEEEecccccCcCCccCC-----CCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          282 WHVLLDATALVVGEDRLN-----LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       282 ~~vlvDAaQa~~G~~~LD-----Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +++++|.+|+. +...+.     ....+.+++++|++|+ .+...++|+++.++++.
T Consensus       240 ~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~  294 (444)
T 3if2_A          240 IPLIIDNAYGM-PFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVI  294 (444)
T ss_dssp             CCEEEECTTCT-TTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHH
T ss_pred             CEEEEECCCCC-cccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHH
Confidence            99999999984 322222     2224678999999997 43223578777665543

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.46  E-value=3.3e-12  Score=119.89  Aligned_cols=156  Identities=9%  Similarity=-0.033  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLDLR  236 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~  236 (344)
                      ..+.|+++++++|++++  +|+||+|+|+|+++++..+     +++ +....|+.  +...++..|++++.+|.+.. +.
T Consensus        63 ~~~l~~~la~~~~~~~~--~i~~~~g~t~al~~~~~~~-----d~vi~~~~~~~~--~~~~~~~~g~~~~~~~~~~~-~~  132 (361)
T 3ftb_A           63 YRRLNKSIENYLKLKDI--GIVLGNGASEIIELSISLF-----EKILIIVPSYAE--YEINAKKHGVSVVFSYLDEN-MC  132 (361)
T ss_dssp             CHHHHHHHHHHHTCCSC--EEEEESSHHHHHHHHHTTC-----SEEEEEESCCTH--HHHHHHHTTCEEEEEECCTT-SC
T ss_pred             HHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHc-----CcEEEecCChHH--HHHHHHHcCCeEEEeecCcc-cC
Confidence            36789999999999876  7999999999999999887     664 44555552  23344557999999998763 46


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCc-----cCCC-CCCC
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGED-----RLNL-ALHR  304 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~-----~LDL-s~l~  304 (344)
                      ++.++|++.+++      ++++.++..+|  |.++|.+.+.+    |+++|+++++|.+|+- ...     .+.+ ...+
T Consensus       133 ~~~~~l~~~l~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~  205 (361)
T 3ftb_A          133 IDYEDIISKIDD------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE-FTGDPSSSFVGEIKNYS  205 (361)
T ss_dssp             CCHHHHHHHTTT------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGG-GTCCTTSSSGGGTTTCS
T ss_pred             CCHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchh-hcCCcccchhHhcccCC
Confidence            788889888863      56777776666  99999865543    4689999999999984 322     1121 1234


Q ss_pred             CcEEEEccccCCCCCC-CceEEEE-EeCC
Q 035915          305 PDFVLCNLDNTQNAQP-SKITCLL-IRKK  331 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P-~GiG~L~-Vr~~  331 (344)
                      .++++.|++|+ +|.| .++|+++ .+++
T Consensus       206 ~~i~~~s~sK~-~~~~G~r~g~~~~~~~~  233 (361)
T 3ftb_A          206 CLFIIRAMTKF-FAMPGIRFGYGITNNKE  233 (361)
T ss_dssp             SEEEEEESSST-TSCGGGCCEEEEESCHH
T ss_pred             CEEEEeeChhh-cCCCCcceeEEEeCCHH
Confidence            45888899999 8734 2368877 3433

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.45  E-value=3e-13  Score=131.48  Aligned_cols=166  Identities=14%  Similarity=0.057  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHc----C---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHC----G---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~L----g---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.+++++    |   ++++  +|+||+|+|+|+++++.++ ..+|+.|+ ....|+.  +...++..|++++.+|
T Consensus        87 ~~~lr~~la~~l~~~~g~~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~v~  161 (425)
T 1vp4_A           87 DPVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLG--AINAFRQYLANFVVVP  161 (425)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHTTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHhccCCCCCCcc--cEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHH--HHHHHHHcCCEEEEec
Confidence            456888888888    9   5554  7999999999999999987 46788865 3444442  3344556799999998


Q ss_pred             CCCCCCccCHHHHHHHhhhcC---CCCCeeEE-EEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc---
Q 035915          230 EAWLDLRIKGSQLSQYFRRKC---KHTPKGLF-SYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED---  296 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~---~~~~t~LV-a~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~---  296 (344)
                      .+. ++ ++.++|++.+++..   ...++++| +++..+|  |.++|.+.+   . .|+++|+++++|.+|+. ...   
T Consensus       162 ~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~  238 (425)
T 1vp4_A          162 LED-DG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA-LRYEGE  238 (425)
T ss_dssp             EET-TE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT-CBCSSC
T ss_pred             cCC-CC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCC
Confidence            875 34 89999998886400   00136776 5666666  999997543   2 35889999999999986 421   


Q ss_pred             -cCCCC---CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          297 -RLNLA---LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       297 -~LDLs---~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                       ..++.   ..+.++++.|++|+ || | |  +|++++++++.+
T Consensus       239 ~~~~~~~~~~~~~~i~~~s~sK~-~~-~-G~r~G~~~~~~~~~~  279 (425)
T 1vp4_A          239 TVDPIFKIGGPERVVLLNTFSKV-LA-P-GLRIGMVAGSKEFIR  279 (425)
T ss_dssp             CCCCHHHHHCTTTEEEEEESTTT-TC-G-GGCEEEEECCHHHHH
T ss_pred             CCcCHHHhCCCCCEEEEeccccc-cc-c-ccceEEEeeCHHHHH
Confidence             23332   23567999999999 88 6 7  699998866543

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.45  E-value=3e-13  Score=128.18  Aligned_cols=163  Identities=15%  Similarity=0.071  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHc-CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-CC
Q 035915          159 IQARNKVLKHC-GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL-DL  235 (344)
Q Consensus       159 e~AR~~IA~~L-ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~-~g  235 (344)
                      .+.|+.+++++ +++++  .|+||+|+|+|+.+++.++ .++||+|+ ....|+.  ....++..|++++.+|.+.. +.
T Consensus        66 ~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~  140 (375)
T 3op7_A           66 PAFKKSVSQLYTGVKPE--QILQTNGATGANLLVLYSL-IEPGDHVISLYPTYQQ--LYDIPKSLGAEVDLWQIEEENGW  140 (375)
T ss_dssp             HHHHHHHHTTSSSCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESSCTH--HHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             HHHHHHHHHHhccCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCchh--HHHHHHHcCCEEEEEeccccCCC
Confidence            56899999998 46665  7999999999999999887 57899865 4555552  23335567999999887632 23


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCcCCcc-C-C-CCCCCCc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVVGEDR-L-N-LALHRPD  306 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~G~~~-L-D-Ls~l~~D  306 (344)
                      .++.++|++++++     ++++|.+...+|  |.++|   ++.|. .|+++|+++++|.+|+. .... + . .+..+.+
T Consensus       141 ~~d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~  214 (375)
T 3op7_A          141 LPDLEKLRQLIRP-----TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS-FSELDVPSIIEVYDKG  214 (375)
T ss_dssp             EECHHHHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC-CSSSCCCCHHHHCTTE
T ss_pred             CCCHHHHHHhhcc-----CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-ccccCCCchhhhcCCE
Confidence            4789999998875     367777776666  99999   65554 46899999999999886 4322 1 1 1124567


Q ss_pred             EEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      +++.|++|+ +|.| |  +|++++++++.+
T Consensus       215 i~~~s~sK~-~~~~-G~r~G~v~~~~~l~~  242 (375)
T 3op7_A          215 IAVNSLSKT-YSLP-GIRIGWVAANHQVTD  242 (375)
T ss_dssp             EEEEESSSS-SSCG-GGCCEEEECCHHHHH
T ss_pred             EEEeEChhh-cCCc-ccceEEEEeCHHHHH
Confidence            899999999 8744 5  599988665544

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.45  E-value=1.7e-12  Score=126.92  Aligned_cols=163  Identities=15%  Similarity=0.032  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCC--
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWL--  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~--  233 (344)
                      ....+.|+++++++|++    +++||+|+|+|+++++.++ +.+|| ++....|+... ...+...|++++.++.+..  
T Consensus        75 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~al~~l-~~~gd-i~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~~  147 (456)
T 2ez2_A           75 ENFYHLERTVQELFGFK----HIVPTHQGRGAENLLSQLA-IKPGQ-YVAGNMYFTTT-RYHQEKNGAVFVDIVRDEAHD  147 (456)
T ss_dssp             HHHHHHHHHHHHHHCCS----EEEEESSHHHHHHHHHHHH-CCTTC-EEEESSCCHHH-HHHHHHTTCEEEECBCGGGGC
T ss_pred             hhHHHHHHHHHHHhCCC----cEEEeCCcHHHHHHHHHHh-CCCCC-Eeccccccchh-HHHHHHcCCEEEEeccccccc
Confidence            35678999999999973    5999999999999999887 67899 88777875322 2234457999998887621  


Q ss_pred             -------CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---ccccc---HHHHHH-HHhCCcEEEecccccCcC-----
Q 035915          234 -------DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYS---MHWISE-AHRNSWHVLLDATALVVG-----  294 (344)
Q Consensus       234 -------~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~P---l~~Ia~-ar~~g~~vlvDAaQa~~G-----  294 (344)
                             ++.++.++|++.++++++ ...++|.+...+|   |.++|   ++.|.+ |+++|+++++|.+|+. |     
T Consensus       148 ~~~~~~~~~~~d~~~l~~~i~~~t~-~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~-g~~~~~  225 (456)
T 2ez2_A          148 AGLNIAFKGDIDLKKLQKLIDEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV-ENAYFI  225 (456)
T ss_dssp             TTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHH-HHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHhccc-cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccc-cccccc
Confidence                   246799999999976420 1236777663333   99898   656644 6899999999999987 6     


Q ss_pred             ----CccCCCC--------CCCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          295 ----EDRLNLA--------LHRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       295 ----~~~LDLs--------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                          ...-+..        ...+|++++|+||+ ++.| ..|+++.+
T Consensus       226 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~-~~~~-~gG~~~~~  270 (456)
T 2ez2_A          226 KEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD-CLVN-IGGFLCMN  270 (456)
T ss_dssp             HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTT-TCCS-SCEEEEES
T ss_pred             cccccccCCcchhhhhhhhcccCCEEEEeCccc-CCCC-ceeEEEEC
Confidence                1111111        12479999999998 7644 36777773

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.45  E-value=1.6e-13  Score=131.24  Aligned_cols=161  Identities=11%  Similarity=-0.014  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcC--HHHHHHHHHcCCcE-----
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEE--LDYVREFASFKESK-----  224 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~--~~~ir~la~~~G~k-----  224 (344)
                      .....++.|+.+++++|++++  +|+||+|+|+|+++++.++. +.+|+.++ ....+|  ...+.   ...|.+     
T Consensus        85 ~~~~~~~l~~~la~~~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~  159 (395)
T 1vef_A           85 PTPMRGEFYRTLTAILPPELN--RVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL---SVTWEPKYREP  159 (395)
T ss_dssp             CCHHHHHHHHHHHHTSCTTEE--EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH---HTCCCHHHHGG
T ss_pred             CCHHHHHHHHHHHHhcCCCcC--EEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhh---hhcCCcccccc
Confidence            345678999999999998655  79999999999999887641 23567654 444444  22111   122332     


Q ss_pred             -------EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEecccc
Q 035915          225 -------VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLDATA  290 (344)
Q Consensus       225 -------V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvDAaQ  290 (344)
                             +..+|.      .+.++|++.+++     ++++|.+...+|  |.++|    ++.|.+ |+++|+++++|.+|
T Consensus       160 ~~p~~~~~~~~~~------~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~  228 (395)
T 1vef_A          160 FLPLVEPVEFIPY------NDVEALKRAVDE-----ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQ  228 (395)
T ss_dssp             GCSCSSCEEEECT------TCHHHHHHHCCT-----TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             cCCCCCCeeEeCC------CcHHHHHHHhcc-----CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence                   333332      367889888864     478888876654  99998    877754 68999999999999


Q ss_pred             c-CcCCc----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          291 L-VVGED----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       291 a-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      + + +..    ++++....+|++  |++|+ |+++.++|++++++++.+
T Consensus       229 ~~~-~~~g~~~~~~~~~~~~d~~--s~sK~-~~~g~~~G~~~~~~~~~~  273 (395)
T 1vef_A          229 TGM-GRTGKRFAFEHFGIVPDIL--TLAKA-LGGGVPLGVAVMREEVAR  273 (395)
T ss_dssp             TTT-TTTSSSSTHHHHTCCCSEE--EECGG-GGTTSSCEEEEEEHHHHH
T ss_pred             cCC-ccCCchhHhhhcCCCCCEE--EEccc-ccCCCceEEEEehHHHHh
Confidence            9 5 532    233334568987  55999 776678999999876543

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.44  E-value=2.5e-13  Score=127.49  Aligned_cols=155  Identities=15%  Similarity=0.125  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHcC---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          158 EIQARNKVLKHCG---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lg---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ..+.|+.+++++|   ++++  +|+||+|+|+++++++.++    |+.++..-.|+.  +...++..|++++.+|.+. +
T Consensus        58 ~~~lr~~la~~~~~~~~~~~--~v~~~~G~~~al~~~~~~~----gd~Vl~~p~y~~--~~~~~~~~g~~~~~v~~~~-~  128 (335)
T 1uu1_A           58 DEELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLMF----DRSVFFPPTYSC--YRIFAKAVGAKFLEVPLTK-D  128 (335)
T ss_dssp             CHHHHHHHHHHHTCSSCCGG--GEEEESSHHHHHHHHHHHS----SEEEECSSSCHH--HHHHHHHHTCEEEECCCCT-T
T ss_pred             hHHHHHHHHHHcCCCCCCHH--HEEEcCChHHHHHHHHHHh----CCcEEECCCcHH--HHHHHHHcCCeEEEeccCC-C
Confidence            6789999999999   8765  7999999999999999988    788764433332  2334455699999888764 3


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-HhCCcEEEecccccCcCC-ccCC-CCCCCCcEEE
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HRNSWHVLLDATALVVGE-DRLN-LALHRPDFVL  309 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~~g~~vlvDAaQa~~G~-~~LD-Ls~l~~DFvv  309 (344)
                      ..++.++|     +     ++++|.++..+|  |.++|.+.+.++ +..| ++++|.+|+..+. ..++ +...+.++++
T Consensus       129 ~~~d~~~l-----~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~  197 (335)
T 1uu1_A          129 LRIPEVNV-----G-----EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVI  197 (335)
T ss_dssp             SCCCCCCC-----C-----TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEE
T ss_pred             CCCCHHHc-----C-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEE
Confidence            34555544     2     367887766666  999999888764 5558 8999999983122 1133 2345678999


Q ss_pred             EccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      .|++|+ || +.|  +|++++++++.+
T Consensus       198 ~s~sK~-~g-~~G~r~G~~~~~~~~~~  222 (335)
T 1uu1_A          198 RTFSKA-FS-LAAQRVGYVVASEKFID  222 (335)
T ss_dssp             EESTTT-TT-CGGGCCEEEEECHHHHH
T ss_pred             ecchhh-cC-CcccCeEEEEeCHHHHH
Confidence            999999 87 447  799999766543

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.44  E-value=3.7e-13  Score=125.95  Aligned_cols=164  Identities=12%  Similarity=0.070  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHH--HHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVR--EFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir--~la~~~G~kV~~vp~~~~  233 (344)
                      ...+.|+++|+++|++    .++||+|+|+|+.+++.++ +.+||+++ ....|... +.  ..+...|++++.+ .++ 
T Consensus        39 ~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~~~~~~-~~~gd~Vl~~~~~~~~~-~~~~~~~~~~g~~~~~v-~~~-  110 (347)
T 1jg8_A           39 TINELERLAAETFGKE----AALFVPSGTMGNQVSIMAH-TQRGDEVILEADSHIFW-YEVGAMAVLSGVMPHPV-PGK-  110 (347)
T ss_dssp             HHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-CCTTCEEEEETTCHHHH-SSTTHHHHHTCCEEEEE-CEE-
T ss_pred             HHHHHHHHHHHHhCCc----eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCcchhhh-ccccchhhccCeEEEEe-cCC-
Confidence            4568899999999984    5899999999988887776 46899865 44444321 11  2344568888887 443 


Q ss_pred             CCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc---cccccHHHH---H-HHHhCCcEEEecccccCcCC---ccCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN---GTRYSMHWI---S-EAHRNSWHVLLDATALVVGE---DRLNLAL  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN---G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~---~~LDLs~  302 (344)
                      ++.++.++|++++++.. ...++++|.+...+|   |.++|++.+   . .|+++|+++++|++|.. +.   ...++..
T Consensus       111 ~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~-~~~~~~~~~~~~  189 (347)
T 1jg8_A          111 NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIF-NASIASGVPVKE  189 (347)
T ss_dssp             TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHH-HHHHHHCCCHHH
T ss_pred             CCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhh-cchhhcCCChHH
Confidence            46689999999886410 012578888876664   999998543   2 35889999999999854 32   2233322


Q ss_pred             --CCCcEEEEccccCCCCCCCceE-EEEEeCCC
Q 035915          303 --HRPDFVLCNLDNTQNAQPSKIT-CLLIRKKS  332 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P~GiG-~L~Vr~~~  332 (344)
                        ..+|++++|+||+ +|+|  +| +++.+++.
T Consensus       190 ~~~~~d~~~~s~sK~-l~~~--~G~~~~~~~~~  219 (347)
T 1jg8_A          190 YAGYADSVMFCLSKG-LCAP--VGSVVVGDRDF  219 (347)
T ss_dssp             HHHTCSEEEEESSST-TCCS--SCEEEEECHHH
T ss_pred             hcccccEEEEecccc-cCCC--ceEEEEcCHHH
Confidence              3689999999999 8867  45 44445433

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.43  E-value=1.3e-12  Score=138.83  Aligned_cols=168  Identities=7%  Similarity=-0.046  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      ..+.++|+.+++++|++ +  .++||+|+|+|+++++.++ +++||.|+ ....|.+. ... +...|+++++++.+.. 
T Consensus       205 g~v~~~ee~la~l~G~d-~--~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~~~h~s~-~~~-~~~~G~~~v~v~~~~~~  278 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-R--SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSI-EQG-LMLTGAKPVYMVPSRNR  278 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-E--EEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHH-HHH-HHHHCCEEEEECCCBCT
T ss_pred             cHHHHHHHHHHHHhCCC-c--eEEECCcHHHHHHHHHHHh-cCCCCEEEECCCchHHH-HHH-HHHcCCEEEEEeCCCCc
Confidence            46788999999999985 2  5788888899999999887 57899865 56666632 111 2335999999887532 


Q ss_pred             ---CCcc-----CHHHHHHHhhhc--CC---CCCeeEEEEeCcc-ccccccHHHHHH-HHhCCcEEEecccccCcCCc--
Q 035915          234 ---DLRI-----KGSQLSQYFRRK--CK---HTPKGLFSYPADI-NGTRYSMHWISE-AHRNSWHVLLDATALVVGED--  296 (344)
Q Consensus       234 ---~g~i-----~~~~L~~~l~~~--~~---~~~t~LVa~~avS-NG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~--  296 (344)
                         .+.+     +.++|++++++.  ++   ..+++++.++.-+ .|.++|++.|.+ |+++|+++++|++|+. +..  
T Consensus       279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~-~~~~~  357 (755)
T 2vyc_A          279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYG-YARFN  357 (755)
T ss_dssp             TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCT-TGGGC
T ss_pred             cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCch-hcccC
Confidence               1345     899999998652  10   1122477776543 299999988865 6999999999999975 321  


Q ss_pred             cC--CCCC-CC--CcE------EEEccccCCCCCCCceEEEEEeCC
Q 035915          297 RL--NLAL-HR--PDF------VLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       297 ~L--DLs~-l~--~DF------vv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +.  +.+. .+  +|+      +++|+||+ +++|.|.|+++++++
T Consensus       358 ~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~-L~g~~~g~~i~~~~~  402 (755)
T 2vyc_A          358 PIYADHYAMRGEPGDHNGPTVFATHSTHKL-LNALSQASYIHVREG  402 (755)
T ss_dssp             GGGTTSSSSCSCCCCCSSBEEEEEEETTTS-SSCCTTCEEEEEECC
T ss_pred             cccCCcchhcCCcCCccCCCeEEEECcccc-ccCcCCeeeeeecCc
Confidence            11  1222 35  687      99999999 888989999999876

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.42  E-value=6.5e-13  Score=127.07  Aligned_cols=166  Identities=10%  Similarity=0.065  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.++++++      +++++ +|+||+|+|+|+++++.++ ..+|+.++ ..-.|+.  ....++..|.+++.+|.
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~  138 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNE-EILVAVGAYGSLFNSIQGL-VDPGDEVIIMVPFYDC--YEPMVRMAGAVPVFIPL  138 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTT-SEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCC-CEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchh--hHHHHHHcCCEEEEEec
Confidence            3557777888776      65522 7999999999999999887 56888854 4444442  23334557999998887


Q ss_pred             CC----------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc---HHHHH-HHHhCCcEEEecccccCc-
Q 035915          231 AW----------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS---MHWIS-EAHRNSWHVLLDATALVV-  293 (344)
Q Consensus       231 ~~----------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P---l~~Ia-~ar~~g~~vlvDAaQa~~-  293 (344)
                      +.          .+..++.++|++.+++     ++++|.+...+|  |.++|   ++.|. .|+++|+++++|.+|+.. 
T Consensus       139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  213 (410)
T 3e2y_A          139 RSKPTDGMKWTSSDWTFDPRELESKFSS-----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV  213 (410)
T ss_dssp             EECCCCSSCCBGGGEECCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred             cccccccccccccCCcCCHHHHHhhcCC-----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcc
Confidence            52          2345788999888764     478888876666  99975   44444 368899999999999741 


Q ss_pred             --CCccCCCCCC----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          294 --GEDRLNLALH----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       294 --G~~~LDLs~l----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                        |....++..+    +.++++.|++|+ ||.| |  +|+++.+++..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~g~~-G~r~G~~~~~~~~~~  260 (410)
T 3e2y_A          214 YTGHTHVKIATLPGMWERTITIGSAGKT-FSVT-GWKLGWSIGPAHLIK  260 (410)
T ss_dssp             CTTCCCCCGGGSTTCGGGEEEEEEHHHH-SSCG-GGCCEEEECCHHHHH
T ss_pred             cCCCCCCCHHHcCCccCeEEEEecchhh-cCCC-CceEEEEEECHHHHH
Confidence              2223333322    345999999999 8733 5  899888765543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.42  E-value=2.8e-12  Score=124.51  Aligned_cols=168  Identities=11%  Similarity=0.052  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHcC--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          155 SIPEIQARNKVLKHCG--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       155 s~~le~AR~~IA~~Lg--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ....++.++.+++.+|  ++++  .|+||+|+|+|+++++..+ ..+|+.|+ ....|+.  +...++..|.+++.+|.+
T Consensus        99 ~~l~~~l~~~l~~~~g~~~~~~--~v~~~~g~~ea~~~a~~~~-~~~gd~Vi~~~~~y~~--~~~~~~~~g~~~~~~~~~  173 (421)
T 3l8a_A           99 DDLYQAVIDWERKEHDYAVVKE--DILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYP--FARTIRLNDHRLVENSLQ  173 (421)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SCTEEEEEEEESCCHH--HHHHHHHTTEEEEEEECE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCcHH--HHHHHHHCCCEEEecccc
Confidence            4456788888888888  5544  7999999999999999887 56788865 4444442  233345579999999876


Q ss_pred             CCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCc---CCccCCC
Q 035915          232 WLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVV---GEDRLNL  300 (344)
Q Consensus       232 ~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~---G~~~LDL  300 (344)
                      +.++  .++.++|++.++..    ++++|.+...+|  |.++|.   +.|. .|+++|+++++|.+|+-.   |.....+
T Consensus       174 ~~~~~~~~d~~~le~~i~~~----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~  249 (421)
T 3l8a_A          174 IINGRFEIDFEQLEKDIIDN----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSL  249 (421)
T ss_dssp             EETTEEECCHHHHHHHHHHT----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             ccCCCeeeCHHHHHHHhhcc----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccH
Confidence            2223  57899999999731    478888877766  988554   4444 368899999999999851   2222233


Q ss_pred             CCC-----CCcEEEEccccCCCCCC-CceEEEEEe-CCC
Q 035915          301 ALH-----RPDFVLCNLDNTQNAQP-SKITCLLIR-KKS  332 (344)
Q Consensus       301 s~l-----~~DFvv~S~HK~l~G~P-~GiG~L~Vr-~~~  332 (344)
                      ..+     +.++++.|++|+ ||.| -++|+++++ +++
T Consensus       250 ~~~~~~~~~~~i~~~s~sK~-~g~~G~~~G~~~~~~~~l  287 (421)
T 3l8a_A          250 NTLDASYKDFTIILSSATKT-FNIAGTKNSFAIIQNESL  287 (421)
T ss_dssp             GGSCTTGGGTEEEEECSHHH-HTCGGGCCEEEECCSHHH
T ss_pred             HHcCchhcCcEEEEEeChhh-ccCchhheEeEEcCCHHH
Confidence            332     445999999999 8733 235999887 443

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.41  E-value=4.3e-13  Score=129.49  Aligned_cols=154  Identities=12%  Similarity=0.048  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ++.++.+++++|+++.+ +++||+|+|+|+++++.++   +||+|+ ....|+  ...+. .++..|++++.+ .     
T Consensus        61 ~~~~~~~a~~~g~~~~~-~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-~-----  129 (374)
T 2aeu_A           61 EKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-D-----  129 (374)
T ss_dssp             HHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-S-----
T ss_pred             HHHHHHHHHHhCCCCcc-eEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-C-----
Confidence            45666668899985322 6999999999999999887   799865 455444  22233 455679988877 1     


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeE-EEEeCccc--c-ccccHHHHHH-HHhCCcEEEecccccCcCCc-cC-C--CCCCCCc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGL-FSYPADIN--G-TRYSMHWISE-AHRNSWHVLLDATALVVGED-RL-N--LALHRPD  306 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~L-Va~~avSN--G-~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~L-D--Ls~l~~D  306 (344)
                        +.++|++. ++     ++++ |.+...+|  | .+.|++.|.+ |+++|+++++|.++.. +.. +. .  ...+++|
T Consensus       130 --d~~~l~~~-~~-----~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~d  200 (374)
T 2aeu_A          130 --KVGEILNK-ID-----KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGA-RVRLLFNQPPALKLGAD  200 (374)
T ss_dssp             --CHHHHHTT-CC-----TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHH-HHHHHTTCCCHHHHTCS
T ss_pred             --CHHHHHhc-CC-----CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCccc-ccccccccCCccccCCc
Confidence              46677765 32     4788 88876666  7 7899987764 6899999999999987 531 11 1  1125789


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++++|+||+ +++| ++|+++.++++.+
T Consensus       201 i~~~S~sK~-l~g~-~~G~~~~~~~~~~  226 (374)
T 2aeu_A          201 LVVTSTDKL-MEGP-RGGLLAGKKELVD  226 (374)
T ss_dssp             EEEEETTSS-SSSC-SCEEEEEEHHHHH
T ss_pred             EEEecCccc-ccCc-ceEEEEECHHHHH
Confidence            999999999 7767 8999999876554

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.41  E-value=7.5e-12  Score=119.16  Aligned_cols=163  Identities=9%  Similarity=-0.030  Sum_probs=113.0

Q ss_pred             HHHHHHHHHc----CC---CCCCCeEEEeCCHHHHHHHHHhhCCCCCC-----CeEE-EcCCcCHHHHHHHHHcCCcEEE
Q 035915          160 QARNKVLKHC----GL---PDDEYLVLFTPNYRDAMMLVGESYPFFRG-----NFYM-TIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       160 ~AR~~IA~~L----ga---~p~ey~VVFTsnaTeAlnlva~sl~~~~G-----d~iv-S~~eH~~~~ir~la~~~G~kV~  226 (344)
                      +.|+.+++++    |.   ++++ +|+||+|+|+|+++++.++ ..+|     +.++ ....|+.  +...++..|++++
T Consensus        70 ~lr~~la~~l~~~~g~~~~~~~~-~i~~t~g~~~al~~~~~~~-~~~g~~~~~d~vl~~~p~~~~--~~~~~~~~g~~~~  145 (396)
T 3jtx_A           70 ELRQACANWLKRRYDGLTVDADN-EILPVLGSREALFSFVQTV-LNPVSDGIKPAIVSPNPFYQI--YEGATLLGGGEIH  145 (396)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCTTT-SEEEESSHHHHHHHHHHHH-CCC---CCCCEEEEEESCCHH--HHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCC-eEEEcCCcHHHHHHHHHHH-hCCCCccCCCEEEEcCCCcHh--HHHHHHHcCCEEE
Confidence            4555555554    74   3441 6999999999999999887 4565     5654 4444442  3334566799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCC----c
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGE----D  296 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~----~  296 (344)
                      .+|.+..+..++.++|++.+++     ++++|.+...+|  |.++|.+.+   . .|+++|+++++|.+|+. ..    .
T Consensus       146 ~v~~~~~g~~~d~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~  219 (396)
T 3jtx_A          146 FANCPAPSFNPDWRSISEEVWK-----RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNK  219 (396)
T ss_dssp             EEECCTTTCCCCGGGSCHHHHH-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTT-CCSTTCC
T ss_pred             EeecCCCCCccCHHHHHHhhcc-----CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCC
Confidence            9998544445788888888875     477888776666  999998663   3 35789999999999985 32    1


Q ss_pred             cCCCC--------CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          297 RLNLA--------LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       297 ~LDLs--------~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ++.+-        ..+.++++.|++|. ||.| |  +|+++.++++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~-G~r~G~~~~~~~~~~  265 (396)
T 3jtx_A          220 PLGCLQAAAQLGRSRQKLLMFTSLSKR-SNVP-GLRSGFVAGDAELLK  265 (396)
T ss_dssp             CCCHHHHHHHTTCCCTTEEEEEESTTT-SSCG-GGCCEEEEECHHHHH
T ss_pred             CchHHhhhhhcccccCcEEEEeccccc-cCCc-ccceEEEEeCHHHHH
Confidence            22211        25678999999997 7755 5  788877665443

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.41  E-value=9.5e-13  Score=124.52  Aligned_cols=162  Identities=12%  Similarity=0.088  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCC--CCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          159 IQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFR--GNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       159 e~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~--Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.|+.+++++    |+  +++  +|+||+|+|+|+++++.++ ..+  |+.|+ ....|+.  +...++..|++++.+|
T Consensus        62 ~~lr~~la~~l~~~~g~~~~~~--~i~~t~g~~~al~~~~~~~-~~~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~  136 (376)
T 3ezs_A           62 ESLRAAQRGFFKRRFKIELKEN--ELISTLGSREVLFNFPSFV-LFDYQNPTIAYPNPFYQI--YEGAAKFIKAKSLLMP  136 (376)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCGG--GEEEESSSHHHHHHHHHHH-TTTCSSCEEEEEESCCTH--HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHH--HEEECcCcHHHHHHHHHHH-cCCCCCCEEEEecCCcHh--HHHHHHHcCCEEEEcc
Confidence            44666666665    87  544  7999999999999999887 467  88865 4445552  3344566799999999


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc---cCCC
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED---RLNL  300 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~---~LDL  300 (344)
                      .+..+ .++. +|++.+.++     +++|.++..+|  |.++|.+.+.    .|+++|+++++|.+|+. ...   +..+
T Consensus       137 ~~~~~-~~~~-~l~~~~~~~-----~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~  208 (376)
T 3ezs_A          137 LTKEN-DFTP-SLNEKELQE-----VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSL  208 (376)
T ss_dssp             CCGGG-TSCC-CCCHHHHHH-----CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSCCCCH
T ss_pred             cCCCC-Ccch-hHHhhhccC-----CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCCCCH
Confidence            87532 2333 555666543     56777765566  9999975443    25789999999999986 322   2222


Q ss_pred             C---------CCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          301 A---------LHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       301 s---------~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      .         ..+.++++.|++|+ ||.| -++|+++.++++.+
T Consensus       209 ~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~  251 (376)
T 3ezs_A          209 LEACMLAGNEAFKNVLVIHSLSKR-SSAPGLRSGFIAGDSRLLE  251 (376)
T ss_dssp             HHHHHHTTCTTCTTEEEEEESTTT-TTCGGGCCEEEEECHHHHH
T ss_pred             HHccccccccccCcEEEEecchhc-cCCccceeEEEeeCHHHHH
Confidence            1         35678999999999 8734 13788887765543

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.5e-12  Score=128.01  Aligned_cols=163  Identities=10%  Similarity=0.002  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.+++++    |.  +++  +|+||+|+|+|+.+++.++ +.+||+|+ ..-.|+.  +...++..|++++.+|.+
T Consensus        98 ~~lr~~ia~~l~~~~g~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~  172 (447)
T 3b46_A           98 PSLINSLIKLYSPIYNTELKAE--NVTVTTGANEGILSCLMGL-LNAGDEVIVFEPFFDQ--YIPNIELCGGKVVYVPIN  172 (447)
T ss_dssp             HHHHHHHHHHHTTTTTSCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchh--HHHHHHHcCCEEEEEeCC
Confidence            45677777776    43  444  7999999999999999887 56899864 4444552  223345579999988875


Q ss_pred             CC-----------CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcC
Q 035915          232 WL-----------DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVG  294 (344)
Q Consensus       232 ~~-----------~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G  294 (344)
                      ..           +..++.++|++.+++     ++++|.+...+|  |.++|.   +.|. .|+++|+++++|.++.. .
T Consensus       173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~  246 (447)
T 3b46_A          173 PPKELDQRNTRGEEWTIDFEQFEKAITS-----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEH-L  246 (447)
T ss_dssp             CCGGGGTSCBCSTTSEECHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-C
T ss_pred             CccccccccccccCcccCHHHHHHhhcc-----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchh-c
Confidence            43           245889999888864     477888776666  999875   4443 35899999999999985 2


Q ss_pred             Cc---cCCCC-----CCCCcEEEEccccCCCCCCCc--eEEEEE-eCCCcc
Q 035915          295 ED---RLNLA-----LHRPDFVLCNLDNTQNAQPSK--ITCLLI-RKKSFD  334 (344)
Q Consensus       295 ~~---~LDLs-----~l~~DFvv~S~HK~l~G~P~G--iG~L~V-r~~~~~  334 (344)
                      ..   ...+.     ..+.|+++.|++|+ ||.| |  +|++++ ++++.+
T Consensus       247 ~~~g~~~~~~~~~~~~~~~~i~i~S~sK~-~~~~-G~riG~~~~~~~~l~~  295 (447)
T 3b46_A          247 YFTDSFTRIATLSPEIGQLTLTVGSAGKS-FAAT-GWRIGWVLSLNAELLS  295 (447)
T ss_dssp             BCSSCCCCGGGSCHHHHTTEEEEEEHHHH-TTCT-TSCCEEEECSCHHHHH
T ss_pred             ccCCCCcCHHHcCCCCCCcEEEEecCchh-cCCc-chhhEEEEeCCHHHHH
Confidence            21   12222     23689999999999 8744 7  999998 655443

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.40  E-value=1.7e-12  Score=124.33  Aligned_cols=162  Identities=11%  Similarity=0.050  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .....++.|+++|+++|++ +  .|+||+|++ ++..+...+ .+.+|+.|+ ...+|+..  ...++..|++++.+|.+
T Consensus        89 ~~~~~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~v~~~  162 (401)
T 2bwn_A           89 TTAYHRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASM--IEGIKRNAGPKRIFRHN  162 (401)
T ss_dssp             CBHHHHHHHHHHHHHTTCS-E--EEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHH--HHHHHHSCCCEEEECTT
T ss_pred             ChHHHHHHHHHHHHHhCCC-c--EEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHH--HHHHHHcCCeEEEEcCC
Confidence            3456789999999999973 3  799988877 544443333 234788865 55566532  12234469999998864


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-cC--CC---CC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-RL--NL---AL  302 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-~L--DL---s~  302 (344)
                            +.++|++.++.. +..++++|.+++.+|  |.++|++.|.+ |+++|+++++|++|+. |.. +-  .+   ..
T Consensus       163 ------d~~~le~~l~~~-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~-g~~~~~g~~~~~~~~  234 (401)
T 2bwn_A          163 ------DVAHLRELIAAD-DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAV-GMYGPRGAGVAERDG  234 (401)
T ss_dssp             ------CHHHHHHHHHHS-CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTT-TTSSTTSCCHHHHHT
T ss_pred             ------CHHHHHHHHHhh-ccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccc-cccCCCCceeeeccC
Confidence                  467788877631 112478999988876  99999987754 7999999999999996 532 10  00   11


Q ss_pred             --CCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          303 --HRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                        .++|+++.|+.|. ||.| | |+++.+++.
T Consensus       235 ~~~~~~i~~~s~sK~-~~~~-G-G~~~~~~~~  263 (401)
T 2bwn_A          235 LMHRIDIFNGTLAKA-YGVF-G-GYIAASARM  263 (401)
T ss_dssp             CGGGCSEEEEESSST-TCSC-C-EEEEECHHH
T ss_pred             ccccCcEEEeechhh-ccCC-C-CEEecCHHH
Confidence              1479999999999 8855 6 877776533

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.40  E-value=3.1e-12  Score=126.50  Aligned_cols=163  Identities=15%  Similarity=0.134  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHc----CC-CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          158 EIQARNKVLKHC----GL-PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       158 le~AR~~IA~~L----ga-~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ..+.|+.|++++    |+ +++  +|+||+|+|+|+++++..+ ..+||.|+. ...|+.  +...++..|++++.+|.+
T Consensus       120 ~~~lr~~ia~~~~~~~g~~~~~--~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~  194 (448)
T 3aow_A          120 FTPLRETLMKWLGKRYGISQDN--DIMITSGSQQALDLIGRVF-LNPGDIVVVEAPTYLA--ALQAFNFYEPQYIQIPLD  194 (448)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTS--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHTTCCEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCcCChh--hEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCCChHH--HHHHHHHcCCEEEEeccC
Confidence            456888888888    98 444  8999999999999999987 578998653 444432  333455679999999987


Q ss_pred             CCCCccCHHHHHHHhh----hcCCCCCeeEE-EEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCCc----
Q 035915          232 WLDLRIKGSQLSQYFR----RKCKHTPKGLF-SYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGED----  296 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~----~~~~~~~t~LV-a~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~~----  296 (344)
                      . ++ ++.++|++.++    +.   .++++| .++..+|  |.++|.+.   |. .|+++|+++++|.+++. ...    
T Consensus       195 ~-~g-~d~~~L~~~l~~~~~~~---~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~-~~~~g~~  268 (448)
T 3aow_A          195 D-EG-MKVEILEEKLKELKSQG---KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGE-LRYSGNP  268 (448)
T ss_dssp             T-TE-ECHHHHHHHHHHHHHTT---CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTT-CBCSSCC
T ss_pred             C-CC-CCHHHHHHHHhhhhccC---CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCC
Confidence            5 34 89999999886    31   146776 5565555  99999753   33 35889999999999987 432    


Q ss_pred             cCCCC---CCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          297 RLNLA---LHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       297 ~LDLs---~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ..++.   ..+.++++.|+.|+ || | |  +|++++++++.+
T Consensus       269 ~~~~~~~~~~~~vi~~~S~SK~-~~-~-GlriG~v~~~~~l~~  308 (448)
T 3aow_A          269 EKKIKALDNEGRVIYLGTFSKI-LA-P-GFRIGWMVGDPGIIR  308 (448)
T ss_dssp             CCCTGGGCTTSCEEEEEESTTT-TC-G-GGCCEEEEECHHHHH
T ss_pred             CcCHHhcCCCCCEEEEccchhh-cc-c-cccEEEEEeCHHHHH
Confidence            12332   23567899999999 88 7 7  899999876544

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.39  E-value=4.8e-12  Score=123.19  Aligned_cols=167  Identities=11%  Similarity=-0.015  Sum_probs=114.3

Q ss_pred             HHHHHHHHHcCCCCC-------CCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          160 QARNKVLKHCGLPDD-------EYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~-------ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      ...+.+++..|++.+       ..+|+||+|+|+|+++++.++ ..+||.|+. .-.|+.  +...++..|++++.+|.+
T Consensus        86 ~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~  162 (425)
T 2r2n_A           86 WLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-INPGDNVLLDEPAYSG--TLQSLHPLGCNIINVASD  162 (425)
T ss_dssp             HHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHH--HHHHHGGGTCEEEEECEE
T ss_pred             HHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCCCcHH--HHHHHHHcCCEEEEeCcC
Confidence            333444444587642       137999999999999999987 568998653 333332  344456679999999886


Q ss_pred             CCCCccCHHHHHHHhhhcC-------CCCCeeEEEE-eCccc--cccccHH---HHH-HHHhCCcEEEecccccC---cC
Q 035915          232 WLDLRIKGSQLSQYFRRKC-------KHTPKGLFSY-PADIN--GTRYSMH---WIS-EAHRNSWHVLLDATALV---VG  294 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~-------~~~~t~LVa~-~avSN--G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~---~G  294 (344)
                      . ++ ++.++|++.++...       ...++++|.+ +..+|  |.++|.+   .|. .|+++|+++++|.+++-   .|
T Consensus       163 ~-~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g  240 (425)
T 2r2n_A          163 E-SG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNK  240 (425)
T ss_dssp             T-TE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS
T ss_pred             C-CC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCC
Confidence            5 33 78999999886210       0124667655 55555  9999986   443 35889999999999972   03


Q ss_pred             CccCCCCC---CCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          295 EDRLNLAL---HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       295 ~~~LDLs~---l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      ....++..   .+.++++.|++|+ || | |  +|++++++++.+
T Consensus       241 ~~~~~~~~~~~~~~~i~~~s~SK~-~~-~-GlRiG~~~~~~~l~~  282 (425)
T 2r2n_A          241 FRVPTFLSMDVDGRVIRADSFSKI-IS-S-GLRIGFLTGPKPLIE  282 (425)
T ss_dssp             SCCCCTGGGCTTSCEEEEEESTTT-TC-S-TTCCEEEEEEHHHHH
T ss_pred             CCCCCccccCCCCCEEEEccchhh-cc-C-ccceEEEecCHHHHH
Confidence            33334433   2456999999999 87 7 7  799999876544

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.39  E-value=1.4e-12  Score=127.50  Aligned_cols=164  Identities=11%  Similarity=0.008  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCC----CCCe---EEEcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF----RGNF---YMTIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~----~Gd~---ivS~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ...+.|+++++++|.  +  .|+||+|+|+|+++++.++ ..    +|++   ++....|... ........|.+++.++
T Consensus        77 ~~~~l~~~la~~~~~--~--~v~~t~ggt~A~~~al~~~-~~~~~~~Gd~~~~viv~~~~~~~-~~~~~~~~g~~~~~~~  150 (467)
T 1ax4_A           77 NYYDLKDKAKELFNY--D--YIIPAHQGRGAENILFPVL-LKYKQKEGKAKNPVFISNFHFDT-TAAHVELNGCKAINIV  150 (467)
T ss_dssp             HHHHHHHHHHHHHCC--C--EEEEESSHHHHHHHHHHHH-HHHHHHTTCCSSCEEEESSCCHH-HHHHHHHTTCEEEECB
T ss_pred             cHHHHHHHHHHHcCC--C--cEEEcCCcHHHHHHHHHHH-HHhhccCCCccceEEEeccccch-hhHHHhccCCceeccc
Confidence            456789999999997  3  6999999999999988876 34    7886   6544445322 2222344588877654


Q ss_pred             CCC---------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHH---HHH-HHHhCCcEEEecccccCc
Q 035915          230 EAW---------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMH---WIS-EAHRNSWHVLLDATALVV  293 (344)
Q Consensus       230 ~~~---------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~---~Ia-~ar~~g~~vlvDAaQa~~  293 (344)
                      ...         .++.++.++|++++++.. ..++++|.+...+|   |.++|.+   .|. .|+++|+++++|++|+.-
T Consensus       151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~  229 (467)
T 1ax4_A          151 TEKAFDSETYDDWKGDFDIKKLKENIAQHG-ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  229 (467)
T ss_dssp             CGGGGCTTSCCTTTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             ccccccccccCCcccccCHHHHHHHHHhcC-CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence            321         134689999999997421 01478888876654   7777764   443 368999999999987640


Q ss_pred             ----------CCccCCCCC------CCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          294 ----------GEDRLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       294 ----------G~~~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                                ++..+++..      ..+|++++|+||+ +|.|.| |+++.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-~g~~~G-g~~~~~  279 (467)
T 1ax4_A          230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD-PLLNIG-GLVAIR  279 (467)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTST-TCCSSC-EEEEES
T ss_pred             cchhccccccccCCCchhhhhhhhccccceEEEecccc-CCCCcc-eEEEeC
Confidence                      223333322      2489999999999 886644 555555

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.38  E-value=3.3e-12  Score=120.10  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC-CCCCCc
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE-AWLDLR  236 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~-~~~~g~  236 (344)
                      .+.|+++|+++|++++  +|+||+|+|+|+++++.++.   ||+++ ....|+.  ....++..|++++.+|. +.. ..
T Consensus        53 ~~lr~~la~~~~~~~~--~i~~t~g~~~al~~~~~~l~---gd~Vi~~~p~~~~--~~~~~~~~g~~~~~v~~~~~~-~~  124 (350)
T 3fkd_A           53 GTLRQMLAKRNSVDNN--AILVTNGPTAAFYQIAQAFR---GSRSLIAIPSFAE--YEDACRMYEHEVCFYPSNEDI-GE  124 (350)
T ss_dssp             HHHHHHHHHHTTCCGG--GEEEESHHHHHHHHHHHHTT---TCEEEEEESCCHH--HHHHHHHTTCEEEEEETTSCG-GG
T ss_pred             HHHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHHC---CCEEEEeCCCcHH--HHHHHHHcCCeEEEEecCCcc-cc
Confidence            4689999999999876  79999999999999999885   88865 4444432  33445667999999998 542 22


Q ss_pred             cCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHH-HhCC-cEEEecccccCcCCc-----cCCCCCCCCcE
Q 035915          237 IKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEA-HRNS-WHVLLDATALVVGED-----RLNLALHRPDF  307 (344)
Q Consensus       237 i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~a-r~~g-~~vlvDAaQa~~G~~-----~LDLs~l~~DF  307 (344)
                      ++.        +     ++++|.++..+|  |.++|++.+.++ +..+ .++++|.+++. ...     ...+...+.++
T Consensus       125 ~~~--------~-----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~i  190 (350)
T 3fkd_A          125 ADF--------S-----NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVS-FTTEEVIRPADIKGRKNLV  190 (350)
T ss_dssp             SCC--------T-----TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTT-SCSSCCCCGGGGTTCSSEE
T ss_pred             Ccc--------C-----CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhh-hccCcchhhHHhhcCCCEE
Confidence            322        1     467787776666  999999877654 5443 69999999984 221     12233445679


Q ss_pred             EEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          308 VLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       308 vv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ++.|++|+ ||.| .++|++++++++.+
T Consensus       191 ~~~S~sK~-~~~~G~r~G~~~~~~~~~~  217 (350)
T 3fkd_A          191 MVYSFSHA-YGIPGLRIGYIVANKDFMK  217 (350)
T ss_dssp             EEEESHHH-HSCGGGCCEEEECCHHHHH
T ss_pred             EEecCchh-ccCcchheEeEEeCHHHHH
Confidence            99999999 8734 24899988665443

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.37  E-value=1.9e-12  Score=125.92  Aligned_cols=166  Identities=8%  Similarity=-0.016  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHH-cCCcEEEE
Q 035915          158 EIQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFAS-FKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~-~~G~kV~~  227 (344)
                      ..+.|++++++++        ++++  +|+||+|+|+|+.+++.++ .++|+.|+ ....|+.  ....+. ..|++++.
T Consensus        88 ~~~l~~~la~~~~~~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p~~~~--~~~~~~~~~g~~~~~  162 (435)
T 3piu_A           88 LPAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPG--FDRDLKWRTGVEIVP  162 (435)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHTTTTTCCEEEE
T ss_pred             cHHHHHHHHHHHHHhhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCCcccc--HHHHHHHhcCCEEEE
Confidence            3678999999998        5555  7999999999999999887 46888865 4555552  112223 46999999


Q ss_pred             EeCCCCC-CccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCC----
Q 035915          228 APEAWLD-LRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGE----  295 (344)
Q Consensus       228 vp~~~~~-g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~----  295 (344)
                      +|.+..+ ..++.++|++.+++.. ...++++|.+...+|  |.++|.+.+.    .|+++|+++++|.+|+. +.    
T Consensus       163 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~~~  241 (435)
T 3piu_A          163 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG-TAFSSP  241 (435)
T ss_dssp             EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCSSS
T ss_pred             eeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC
Confidence            9987421 2478899999886410 112477887776666  9999985443    35789999999999985 32    


Q ss_pred             ccCCCCCC----CC---------cEEEEccccCCCCCC-CceEEEEEeC
Q 035915          296 DRLNLALH----RP---------DFVLCNLDNTQNAQP-SKITCLLIRK  330 (344)
Q Consensus       296 ~~LDLs~l----~~---------DFvv~S~HK~l~G~P-~GiG~L~Vr~  330 (344)
                      ...++..+    ++         ++++.|++|+ ||.| ..+|++++++
T Consensus       242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~-~g~~G~r~G~~~~~~  289 (435)
T 3piu_A          242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD-LGLPGFRVGAIYSND  289 (435)
T ss_dssp             CCCCHHHHHHC-------CGGGGEEEEEESSSS-SCCGGGCEEEEEESC
T ss_pred             CCcCHHHhccccccccccCCCCCEEEEEeeecc-cCCCceeEEEEEeCC
Confidence            11222111    12         2889999999 8744 1379999854

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.37  E-value=1.8e-12  Score=127.70  Aligned_cols=171  Identities=11%  Similarity=-0.061  Sum_probs=116.6

Q ss_pred             hhhhhHHHH-HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH---HHHH-HHHHcCCcE
Q 035915          151 GSFISIPEI-QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL---DYVR-EFASFKESK  224 (344)
Q Consensus       151 g~~as~~le-~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~---~~ir-~la~~~G~k  224 (344)
                      |......++ -+|+++++++|++.   ..+++.|+|+|+..++.++ +++||+++ ....|+.   .... .+.. .+..
T Consensus        85 g~~~~~~~e~~a~~~la~~~g~~~---~~v~~~sGs~a~~~a~~~~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~  159 (447)
T 3h7f_A           85 GCEHVDVVENLARDRAKALFGAEF---ANVQPHSGAQANAAVLHAL-MSPGERLLGLDLANGGHLTHGMRLNFSG-KLYE  159 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHHH-HSSE
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCc---eEEEeCCHHHHHHHHHHHh-cCCCCEEEecCcccccccchhhhhhhcC-CeeE
Confidence            333333444 55699999999963   3454778899999888877 57899865 4445542   1110 1111 2456


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCcc----CC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDR----LN  299 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~----LD  299 (344)
                      +..++.+..++.++.++|++.+...    +++++.+...+|+...+++.|.+ |+++|+++++|.+|+. |...    .+
T Consensus       160 ~~~~~~~~~~~~~d~~~l~~~i~~~----~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~-g~~~~g~~~~  234 (447)
T 3h7f_A          160 NGFYGVDPATHLIDMDAVRATALEF----RPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFA-GLVAAGLHPS  234 (447)
T ss_dssp             EEEECCCTTTCSCCHHHHHHHHHHH----CCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHTTSSCC
T ss_pred             EEEcCcCcccCCcCHHHHHHHHHhc----CCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchh-hhhcCCCCCC
Confidence            6667766545679999999998642    35677765445565569988865 6899999999999987 6321    12


Q ss_pred             CCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .- ..+|++++|+||+ |+||.| |+++.++++.+
T Consensus       235 ~~-~~~di~~~s~sK~-l~G~~g-G~i~~~~~~~~  266 (447)
T 3h7f_A          235 PV-PHADVVSTTVHKT-LGGGRS-GLIVGKQQYAK  266 (447)
T ss_dssp             ST-TTCSEEEEESSGG-GCCCSC-EEEEECGGGHH
T ss_pred             CC-CCCcEEEecCCcC-CCCCCe-EEEEECHHHHH
Confidence            11 2579999999999 888987 99988876543

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.36  E-value=1.3e-11  Score=121.24  Aligned_cols=156  Identities=10%  Similarity=-0.041  Sum_probs=114.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHH-HHcCCcEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREF-ASFKESKVI  226 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~l-a~~~G~kV~  226 (344)
                      ++......++.+++++++.|++    .++|++|+++|+.++ ..+ +++|++|+ ....|+  ...+..+ .+..|+++.
T Consensus        62 ~r~~~p~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~  135 (400)
T 3nmy_A           62 SRTHNPTRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFS  135 (400)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEE
Confidence            4445556788899999999974    356666669999985 343 46899865 455565  2234443 455699999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCC--ccCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGE--DRLNLA  301 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~--~~LDLs  301 (344)
                      .++.+      +.++|++++++     ++++|.+...+|  |.+.|++.|.+ |+++|+++++|.+|+. +.  .+++  
T Consensus       136 ~v~~~------d~~~l~~~i~~-----~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~-~~~~~~~~--  201 (400)
T 3nmy_A          136 FVDLT------DPAAFKAAIRA-----DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFAS-PMLQRPLS--  201 (400)
T ss_dssp             EECTT------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH-HHHCCGGG--
T ss_pred             EECCC------CHHHHHHHhcc-----CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc-cccCChhh--
Confidence            88864      56788888865     478888887776  99999988865 6999999999999986 43  3444  


Q ss_pred             CCCCcEEEEccccCCCCCCC-ceEE-EEE
Q 035915          302 LHRPDFVLCNLDNTQNAQPS-KITC-LLI  328 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~-GiG~-L~V  328 (344)
                       +++|+++.|++|+ +|+|. .+|. +++
T Consensus       202 -~g~div~~S~sK~-l~g~g~~~gG~~vv  228 (400)
T 3nmy_A          202 -LGADLVVHSATKY-LNGHSDMVGGIAVV  228 (400)
T ss_dssp             -GTCSEEEEETTTT-TTCSSSCCCEEEEE
T ss_pred             -cCCcEEEecCccc-cCCCCCcceeEEEE
Confidence             4799999999999 88772 3555 444

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.36  E-value=2.1e-11  Score=117.44  Aligned_cols=157  Identities=13%  Similarity=0.109  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ..++.++.+++++|++.   .|+ +.++|+|+..++.++ ..+||.|+ ....|...  ....+..|+++..++.     
T Consensus       105 ~~~~l~~~la~~~g~~~---~i~-~~sGt~a~~~~l~~~-~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~~~~-----  172 (409)
T 3kki_A          105 DKPMIEKRLAKFTGFDE---CLL-SQSGWNANVGLLQTI-CQPNTNVYIDFFAHMSL--WEGARYANAQAHPFMH-----  172 (409)
T ss_dssp             TSCHHHHHHHHHHTCSE---EEE-ESCHHHHHHHHHHHH-CCTTCEEEEETTSCHHH--HHHHHHTTCEEEEECT-----
T ss_pred             HHHHHHHHHHHHhCCCe---EEE-ecchHHHHHHHHHHh-cCCCCEEEECCCcCHHH--HHHHHHcCCeEEEecC-----
Confidence            44678999999999852   344 455579988888776 56899865 45555421  2223345888877654     


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCcc---------CCCCCC
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDR---------LNLALH  303 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~---------LDLs~l  303 (344)
                       .+.++|++.+.+.    ++++|.+...+|  |.+.|++.|.+ |+++|+++++|.+|+. |...         .++. .
T Consensus       173 -~d~~~le~~l~~~----~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~-g~~g~~g~~~~~~~~~~-~  245 (409)
T 3kki_A          173 -NNCDHLRMLIQRH----GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSL-GTHGPNGAGLLAELGLT-R  245 (409)
T ss_dssp             -TCHHHHHHHHHHH----CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTT-TTSSGGGCCHHHHHTCG-G
T ss_pred             -CCHHHHHHHHHhc----CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccc-cccCCCCCcchhhcCCC-C
Confidence             3678899988753    357888887765  99999987764 6999999999999987 6431         2222 3


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|+++.|++|+ ||++  .|+++.+++..+.
T Consensus       246 ~~di~~~s~sK~-~~~~--gg~v~~~~~~~~~  274 (409)
T 3kki_A          246 EVHFMTASLAKT-FAYR--AGAIWCNNEVNRC  274 (409)
T ss_dssp             GCSEEEEESSST-TCSS--CEEEEESSSGGGT
T ss_pred             CCCEEEeecchh-hCCC--ceEEEECHHHHHH
Confidence            689999999999 8844  4888888776553

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.34  E-value=4.8e-12  Score=122.26  Aligned_cols=166  Identities=11%  Similarity=0.034  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHH--HHHhhCCCC-C---------CCeEE-EcCCcCHHHHHHHHHcCCcE
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMM--LVGESYPFF-R---------GNFYM-TIIGEELDYVREFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAln--lva~sl~~~-~---------Gd~iv-S~~eH~~~~ir~la~~~G~k  224 (344)
                      ..+.|+.||++++++++  +|+||+|+|++++  +++.++... +         |+.++ ..-.|+.  ....++..|++
T Consensus        72 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~  147 (423)
T 3ez1_A           72 LPSARALFAGYLDVKAE--NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDR--HFLLLQTLGFE  147 (423)
T ss_dssp             CHHHHHHHHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHH--HHHHHHHHTCE
T ss_pred             hHHHHHHHHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHH--HHHHHHHcCCE
Confidence            46799999999999876  7999999999998  777765321 4         57765 3434432  23334456999


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc--cccccHHHHH---H-H-HhCCcEEEecccccCcCC-
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN--GTRYSMHWIS---E-A-HRNSWHVLLDATALVVGE-  295 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN--G~i~Pl~~Ia---~-a-r~~g~~vlvDAaQa~~G~-  295 (344)
                      ++.+|.+. ++ ++.++|++.++..   .++++|.+ +..+|  |.++|.+.+.   + | +++|+++++|.+++. .. 
T Consensus       148 ~~~v~~~~-~g-~d~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~-~~~  221 (423)
T 3ez1_A          148 LLTVDMQS-DG-PDVDAVERLAGTD---PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV-HHL  221 (423)
T ss_dssp             EEEEEEET-TE-ECHHHHHHHHHSC---TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS-CBC
T ss_pred             EEeccCCC-CC-CCHHHHHHHHhhC---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch-hhc
Confidence            99999875 34 8999999998521   25777764 45556  9999997443   2 4 678999999999983 21 


Q ss_pred             ------ccCCC-------CCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          296 ------DRLNL-------ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       296 ------~~LDL-------s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                            ...++       ...+.++++.|++|+ ++...++|+++.++++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~~~~  272 (423)
T 3ez1_A          222 VEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASSEDNIR  272 (423)
T ss_dssp             CSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEECHHHHH
T ss_pred             CCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeCHHHHH
Confidence                  11121       133567999999997 443457999988776543

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.33  E-value=8.9e-12  Score=121.00  Aligned_cols=171  Identities=12%  Similarity=0.069  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C-----CCCCeEE-EcCCcC--HHHHHHHHH-----cC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F-----FRGNFYM-TIIGEE--LDYVREFAS-----FK  221 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~-----~~Gd~iv-S~~eH~--~~~ir~la~-----~~  221 (344)
                      ....+.+++++++++++++  +|+||+|+|||+++++..+. +     .+|+.++ ..-.+|  ......+..     +.
T Consensus        86 ~~~~~l~~~la~~~~~~~~--~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~  163 (429)
T 1s0a_A           86 APAIELCRKLVAMTPQPLE--CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS  163 (429)
T ss_dssp             HHHHHHHHHHHHHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred             HHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcc
Confidence            3456677789999998766  79999999999998876531 1     1477765 333344  221111100     00


Q ss_pred             -----CcEEEEEeCCC-----CCCccCHHHHHHHhhhcCCCCCeeEEEEeCc-cc--ccccc----HHHHHH-HHhCCcE
Q 035915          222 -----ESKVILAPEAW-----LDLRIKGSQLSQYFRRKCKHTPKGLFSYPAD-IN--GTRYS----MHWISE-AHRNSWH  283 (344)
Q Consensus       222 -----G~kV~~vp~~~-----~~g~i~~~~L~~~l~~~~~~~~t~LVa~~av-SN--G~i~P----l~~Ia~-ar~~g~~  283 (344)
                           ...+..++.+.     ..+.++.++|++.+++.  ..++++|.+..+ +|  |.++|    ++.|.+ |+++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~  241 (429)
T 1s0a_A          164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH--RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH--TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             cccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC--CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence                 11344555431     11347888999888741  124778888776 55  98888    877765 6899999


Q ss_pred             EEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          284 VLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       284 vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      +++|.+|+ + |...    ++.....+|++++|  |+ |+++ .++|++++++++.+
T Consensus       242 li~De~~~~~-g~~g~~~~~~~~~~~~d~~t~s--K~-l~~G~~~iG~~~~~~~~~~  294 (429)
T 1s0a_A          242 LIADEIATGF-GRTGKLFACEHAEIAPDILCLG--KA-LTGGTMTLSATLTTREVAE  294 (429)
T ss_dssp             EEEECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTSSSCCEEEEECHHHHH
T ss_pred             EEEeehhhCC-cccchHHHhhhcCCCCCEEEec--cc-ccCCCccceEEEeCHHHHH
Confidence            99999998 6 6432    23334578999888  88 7766 78999999876543

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.33  E-value=6e-12  Score=123.12  Aligned_cols=166  Identities=10%  Similarity=0.003  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCC-----C----CeEEEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFR-----G----NFYMTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~-----G----d~ivS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ...+.|+++++++|+  +  .|+||+|+|+|+++++.++. .+     |    |+|+....|... ........|..+..
T Consensus        75 ~~~~l~~~la~~~~~--~--~v~~t~~gt~A~~~al~~~~-~~~~~~~G~~~~d~Ii~~~~h~~t-~~~~~~~~~~~~~~  148 (467)
T 2oqx_A           75 SYYALAESVKNIFGY--Q--YTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDT-TQGHSQINGCTVRN  148 (467)
T ss_dssp             HHHHHHHHHHHHHCC--S--EEEEEC--CCSHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHH-HHHHHHHTTCEEEE
T ss_pred             hhHHHHHHHHHHhCc--C--cEEEcCCcHHHHHHHHHHHh-ccccccCCCCccceEEeccccccc-chhhhhccCcceee
Confidence            456789999999987  3  69999999999998877652 34     6    776655455422 12222234555544


Q ss_pred             E------eCC---CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccH---HHHH-HHHhCCcEEEeccccc
Q 035915          228 A------PEA---WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSM---HWIS-EAHRNSWHVLLDATAL  291 (344)
Q Consensus       228 v------p~~---~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa  291 (344)
                      .      +.+   ..++.++.++|++++++.. ..++++|.+...+|   |.++|.   +.|. .|+++|+++++|++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~-~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~  227 (467)
T 2oqx_A          149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC-GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             ccccccccCCCCCCccCCcCHHHHHHHHHhcC-CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            2      111   0235689999999997410 01367788776554   777665   4454 3689999999998875


Q ss_pred             C----------cCCccCCCCC------CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          292 V----------VGEDRLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       292 ~----------~G~~~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      .          .+....++..      ..+|++++|+||+ +|.|.| |+++.+++
T Consensus       228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~-~g~~~G-g~~~~~~~  281 (467)
T 2oqx_A          228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD-AMVPMG-GLLCMKDD  281 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST-TCCSSC-EEEEECSG
T ss_pred             hhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccc-cCCCCc-eEEEecCh
Confidence            4          0222233222      2489999999999 887755 56666655

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.33  E-value=3.2e-11  Score=115.45  Aligned_cols=163  Identities=3%  Similarity=-0.173  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHcCCC------CCCCeEEE--eCCHHHHHHHHHhhCC--CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEE
Q 035915          158 EIQARNKVLKHCGLP------DDEYLVLF--TPNYRDAMMLVGESYP--FFRGNFYM-TIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       158 le~AR~~IA~~Lga~------p~ey~VVF--TsnaTeAlnlva~sl~--~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~  226 (344)
                      ..+.|+.++++++..      ++  +|+|  |+|+|+|+++++..+.  ..+|+.++ ..-.|..  ....++..|++++
T Consensus        73 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~  148 (401)
T 7aat_A           73 LADFTRASAELALGENSEAFKSG--RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGN--HTPIFRDAGLQLQ  148 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTT--HHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHhcCCCccccccC--ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchh--HHHHHHHcCCeeE
Confidence            467888999988753      55  6877  9999999998876642  35789864 4444442  2233445699999


Q ss_pred             EEeCCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCccC-
Q 035915          227 LAPEAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGEDRL-  298 (344)
Q Consensus       227 ~vp~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~~L-  298 (344)
                      .+|.+. .++.++.+++.+.+.. . ..+++++.++..+|  |.+++.+.+   . .|+++|+++++|.++.-.+.... 
T Consensus       149 ~~~~~~~~~~~~d~~~l~~~l~~-~-~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~  226 (401)
T 7aat_A          149 AYRYYDPKTCSLDFTGAMEDISK-I-PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDIN  226 (401)
T ss_dssp             EEECEETTTTEECHHHHHHHHTT-S-CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHH
T ss_pred             eeeeeccccCccCHHHHHHHHHh-C-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCcc
Confidence            998742 2467899888877764 1 23578989887777  988886544   3 35889999999998653133322 


Q ss_pred             -C---C----CCCCCcEEEEccccCCCCCCCc--eEEEEE
Q 035915          299 -N---L----ALHRPDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       299 -D---L----s~l~~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                       +   +    ....-.+++.|++|. || +.|  +|+|++
T Consensus       227 ~~~~~~~~~~~~~~~~i~~~S~sK~-~~-~~G~RiG~l~~  264 (401)
T 7aat_A          227 RDAWALRHFIEQGIDVVLSQSYAKN-MG-LYGERAGAFTV  264 (401)
T ss_dssp             HHTHHHHHHHHTTCCCEEEEECTTT-SC-CGGGCEEEEEE
T ss_pred             ccHHHHHHHHhcCCcEEEEecCCcc-cc-cccCceEEEEE
Confidence             1   1    223467899999999 88 447  899987

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.32  E-value=7e-12  Score=121.66  Aligned_cols=165  Identities=12%  Similarity=0.067  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHH--HHHHhhCCC-CC----------CCeEE-EcCCcCHHHHHHHHHcCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAM--MLVGESYPF-FR----------GNFYM-TIIGEELDYVREFASFKES  223 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAl--nlva~sl~~-~~----------Gd~iv-S~~eH~~~~ir~la~~~G~  223 (344)
                      +.+.|+.||++++++++  +|+||+|+|+++  ++++.++.. .+          |++++ ..-.|+.  ....++..|+
T Consensus        80 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~--~~~~~~~~g~  155 (427)
T 3ppl_A           80 IVDIRQIWADLLGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDR--HFSITERFGF  155 (427)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH--HHHHHHHTTC
T ss_pred             cHHHHHHHHHHhCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHH--HHHHHHHcCC
Confidence            46799999999999876  799999999999  577776521 13          88865 3333332  3344556799


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc--cccccHHH---HHH-H-HhCCcEEEecccccCc--
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN--GTRYSMHW---ISE-A-HRNSWHVLLDATALVV--  293 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN--G~i~Pl~~---Ia~-a-r~~g~~vlvDAaQa~~--  293 (344)
                      +++.+|.+. ++ ++.++|++.++.    .++++|.+. ..+|  |.++|.+.   |.+ | +++|+++++|.+++..  
T Consensus       156 ~~~~v~~~~-~g-~d~~~l~~~l~~----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~  229 (427)
T 3ppl_A          156 EMISVPMNE-DG-PDMDAVEELVKN----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTL  229 (427)
T ss_dssp             EEEEEEEET-TE-ECHHHHHHHTTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             EEEEeCCCC-CC-CCHHHHHHHHhc----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccccc
Confidence            999999875 34 899999998842    247777654 5566  99999973   433 4 7889999999999740  


Q ss_pred             CCc---cCCCC-------CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          294 GED---RLNLA-------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       294 G~~---~LDLs-------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +..   ++++.       ..+.++++.|++|+ ++..-++|+++.++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~l~  278 (427)
T 3ppl_A          230 TDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTSAENR  278 (427)
T ss_dssp             SSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECCHHHH
T ss_pred             CCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcCHHHH
Confidence            211   12221       33578999999998 55334688887776543

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.32  E-value=4.2e-12  Score=121.09  Aligned_cols=162  Identities=10%  Similarity=-0.073  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHc-CC--CCCCCeEEE--eCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC-GL--PDDEYLVLF--TPNYRDAMMLVGESYP-FFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L-ga--~p~ey~VVF--TsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++ +.  +++  +|+|  |+|+|+|+++++..+. +.+|+.++ ..-.|+.  +...++..|++++.+|.
T Consensus        71 ~~~lr~~la~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~  146 (394)
T 2ay1_A           71 EPEFQKAMGELILGDGLKSE--TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPN--HVSIMNFMGLPVQTYRY  146 (394)
T ss_dssp             CHHHHHHHHHHHHGGGCCGG--GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH--HHHHHHHHTCCEEEEEC
T ss_pred             cHHHHHHHHHHHhCCCCCcc--cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChh--HHHHHHHcCCceEEEec
Confidence            467899999987 55  454  7999  9999999999887653 34788754 4444442  23334446889999887


Q ss_pred             CC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc-------
Q 035915          231 AW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED-------  296 (344)
Q Consensus       231 ~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~-------  296 (344)
                      +. .+..++.++|++.+++.  ..++.++.++..+|  |.++|.+.+   . .|+++|+++++|.+|+. ...       
T Consensus       147 ~~~~~~~~d~~~l~~~l~~~--~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~  223 (394)
T 2ay1_A          147 FDAETRGVDFEGMKADLAAA--KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG-FGDGLEEDAA  223 (394)
T ss_dssp             EETTTTEECHHHHHHHHHTC--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTT-SSSCHHHHHH
T ss_pred             ccccCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccc-cccCcccchH
Confidence            41 13568999999988742  12367787787776  999988644   2 35889999999999985 322       


Q ss_pred             cCC-CCCCCC-cEEEEccccCCCCCCCc--eEEEEE
Q 035915          297 RLN-LALHRP-DFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       297 ~LD-Ls~l~~-DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                      ++. +...+. ++++.|++|+ || +.|  +|++++
T Consensus       224 ~~~~~~~~~~~~i~~~s~sK~-~~-~~G~riG~~~~  257 (394)
T 2ay1_A          224 GTRLIASRIPEVLIAASCSKN-FG-IYRERTGCLLA  257 (394)
T ss_dssp             HHHHHHHHCSSEEEEEECTTT-TT-CGGGCEEEEEE
T ss_pred             HHHHHhhcCCCEEEEEeccCC-Cc-CcCCccceEEE
Confidence            222 322233 3778899999 87 457  599998

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.31  E-value=7.6e-12  Score=119.92  Aligned_cols=165  Identities=12%  Similarity=0.050  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC-----eEEE--cCCcCH-H-HHHHHH--H
Q 035915          157 PEIQARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN-----FYMT--IIGEEL-D-YVREFA--S  219 (344)
Q Consensus       157 ~le~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd-----~ivS--~~eH~~-~-~ir~la--~  219 (344)
                      .+.+.|+.||+++      +++++  +|+||+|+|+|+++++.++ ..+|+     +++.  .-.|+. . .+....  .
T Consensus        76 g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~  152 (417)
T 3g7q_A           76 GKTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFV  152 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHHHHC-----CCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCccccchhhccchhhhc
Confidence            3567899999988      56665  7999999999999999987 45665     6553  333331 1 111110  1


Q ss_pred             cCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCc
Q 035915          220 FKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVV  293 (344)
Q Consensus       220 ~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~  293 (344)
                      ..+..+..++.+..+..++.++|+  +++     +++++.++..+|  |.++|.   +.|. .|+++|+++++|.+++. 
T Consensus       153 ~~~~~~~~~~~~~~~~~~d~~~l~--~~~-----~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~-  224 (417)
T 3g7q_A          153 SARPNIELLPEGQFKYHVDFEHLH--IGE-----ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV-  224 (417)
T ss_dssp             ECCCEEEEEGGGEEEEECCGGGCC--CCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT-
T ss_pred             cccCcccccCCcccccccCHHHhc--ccc-----CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc-
Confidence            224455555543112246666665  332     578888887776  999994   4443 36899999999999984 


Q ss_pred             CCccCC-----CCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          294 GEDRLN-----LALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~~LD-----Ls~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ....+.     ....+.++++.|++|+ .+ | .++|+++.++++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~-~G~r~G~~~~~~~~~~  269 (417)
T 3g7q_A          225 PFPGIIFSEARPLWNPNIILCMSLSKL-GL-PGSRCGIIIANDKTIT  269 (417)
T ss_dssp             TTTCCBCSCCCCCCCTTEEEEEESGGG-TC-TTSCCEEEECCHHHHH
T ss_pred             ccccccccccccCCCCCEEEEEechhc-cC-CCcceEEEEeCHHHHH
Confidence            322222     1224678999999996 43 4 24888887665443

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.31  E-value=1.2e-11  Score=119.08  Aligned_cols=157  Identities=10%  Similarity=-0.003  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHH--cC-CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcE-EEEEeCCC
Q 035915          158 EIQARNKVLKH--CG-LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESK-VILAPEAW  232 (344)
Q Consensus       158 le~AR~~IA~~--Lg-a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~k-V~~vp~~~  232 (344)
                      ..+.|+.++++  .| ++++  +|+||+|+|++++++...+  .+|+.|+ ..-.|+.  +...++..|.+ ++.+|.+.
T Consensus        77 ~~~lr~~la~~l~~g~~~~~--~v~~~~G~~~al~~~~~~~--~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~~~~~~~  150 (400)
T 3asa_A           77 LPALRQKLSEDFYRGFVDAK--EIFISDGAKVDLFRLLSFF--GPNQTVAIQDPSYPA--YLDIARLTGAKEIIALPCLQ  150 (400)
T ss_dssp             CHHHHHHHHHTTSTTSSCGG--GEEEESCHHHHHHHHHHHH--CSSCEEEEEESCCHH--HHHHHHHTTCSEEEEEECCG
T ss_pred             CHHHHHHHHHHHHcCCCCHH--HEEEccChHHHHHHHHHHc--CCCCEEEECCCCcHH--HHHHHHHcCCcceEecccch
Confidence            46799999999  47 6655  7999999999999977554  5788865 3444442  23334556888 88888764


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEeccccc-CcCC---ccCCCCC
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATAL-VVGE---DRLNLAL  302 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa-~~G~---~~LDLs~  302 (344)
                      . +.+..+ +++ +      .++++|.++..+|  |.++|.+.+   . .|+++|+++++|.+|+ + +.   .+.++..
T Consensus       151 ~-~~~~~~-l~~-~------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~  220 (400)
T 3asa_A          151 E-NAFFPE-FPE-D------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTF-ISDPSLPKSIFE  220 (400)
T ss_dssp             G-GTTCCC-CCT-T------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-CCCTTSCSSGGG
T ss_pred             h-cCcccC-hhh-c------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhh-hcCCCCCCchhh
Confidence            2 222211 211 1      2467777765566  999997543   3 3588999999999998 4 32   2345543


Q ss_pred             CC----CcEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          303 HR----PDFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       303 l~----~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      ++    .++++.|++|+ ||.| |  +|+++++++.
T Consensus       221 ~~~~~~~~i~~~s~sK~-~g~~-GlriG~~~~~~~~  254 (400)
T 3asa_A          221 IPDARFCAIEINSFSKP-LGFA-GIRLGWTVIPQEL  254 (400)
T ss_dssp             STTGGGTEEEEEECCGG-GTTT-TCCCEEEECCTTC
T ss_pred             CCCCCCceEEEecchhh-cCCc-chheeEEeeChhh
Confidence            32    45999999999 8744 6  7999998877

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.28  E-value=2e-11  Score=116.26  Aligned_cols=163  Identities=9%  Similarity=-0.072  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEE--eCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLF--TPNYRDAMMLVGESYP-FFRGNFYM-TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVF--TsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+.|++++++++      ++++  +|+|  |+|+|+|+++++..+. +.+|+.++ ..-.|+.  +...++..|++++.
T Consensus        71 ~~~lr~~la~~~~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~  146 (396)
T 2q7w_A           71 IPEFGRCTQELLFGKGSALINDK--RARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN--HKSVFNSAGLEVRE  146 (396)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH--HHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHhcCCCCccccc--cEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchh--HHHHHHHcCCceEE
Confidence            4678999999983      2344  6998  9999999999886553 35788865 3444542  23344557999999


Q ss_pred             EeCCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc----
Q 035915          228 APEAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED----  296 (344)
Q Consensus       228 vp~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~----  296 (344)
                      +|.+. .+..++.++|++.+++.  ..+++++.++..+|  |.++|.+.+   . .|+++|+++++|.++...+..    
T Consensus       147 ~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  224 (396)
T 2q7w_A          147 YAYYDAENHTLDFDALINSLNEA--QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED  224 (396)
T ss_dssp             EECEETTTTEECHHHHHHHHTTC--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH
T ss_pred             EecccCCCCCcCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch
Confidence            98741 23568999999988642  12367788777776  999988643   2 357899999999998751221    


Q ss_pred             --cCC-CCCC-CCcEEEEccccCCCCCCCc--eEEEEE
Q 035915          297 --RLN-LALH-RPDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       297 --~LD-Ls~l-~~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                        ++. +... +.++++.|++|+ || +.|  +|++++
T Consensus       225 ~~~~~~~~~~~~~~i~~~s~sK~-~~-~~G~riG~~~~  260 (396)
T 2q7w_A          225 AEGLRAFAAMHKELIVASSYSXN-FG-LYNERVGACTL  260 (396)
T ss_dssp             THHHHHHHHHCSCEEEEEECTTT-TT-CGGGCCEEEEE
T ss_pred             hHHHHHHHhcCCcEEEEEecccc-cc-ccccccceEEE
Confidence              121 2111 346889999999 87 558  699997

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.27  E-value=4.5e-12  Score=119.10  Aligned_cols=162  Identities=12%  Similarity=0.024  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe--EEEc-CCcCHH-HHHHHHHcCCcEEEEEeCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF--YMTI-IGEELD-YVREFASFKESKVILAPEA  231 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~--ivS~-~eH~~~-~ir~la~~~G~kV~~vp~~  231 (344)
                      ...++.|+.+++++|++.    .+|++|+|+|+.+++..+. .+|+.  ++.. ..|... ....++...|++++.+|.+
T Consensus        48 ~~~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  122 (359)
T 3pj0_A           48 AVIEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA  122 (359)
T ss_dssp             HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT
T ss_pred             HHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc
Confidence            356789999999999852    4677999999988877652 34554  4433 322211 1111222348898888874


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHH---H-HHHhCCcEEEecccccCcCCc------cC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED------RL  298 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~------~L  298 (344)
                        ++.++.++|++. .+     ++++|.+...+|   |.++|++.+   . .|+++|+++++|++|.. +..      ..
T Consensus       123 --~~~~d~~~l~~~-~~-----~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~-~~~~~~~~~~~  193 (359)
T 3pj0_A          123 --NQLLTIDDIKSL-RE-----PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLW-EITPFYQKSAE  193 (359)
T ss_dssp             --TSCCCHHHHHTC-SS-----CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCG-GGHHHHTCCHH
T ss_pred             --CCCcCHHHHHhc-cC-----CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchh-cchhhhCCCHH
Confidence              467899988876 32     467887754433   799998765   3 35889999999999875 431      11


Q ss_pred             CCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          299 NLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       299 DLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ++. ..+|++++|+||+ +++|.| |+++.++++.+
T Consensus       194 ~~~-~~~d~~~~s~sK~-~~~~~g-g~~~~~~~l~~  226 (359)
T 3pj0_A          194 EIC-ALFDSVYVSFYKG-IGGIAG-AILAGNDDFVQ  226 (359)
T ss_dssp             HHH-TTCSEEEEESSST-TCCSSC-EEEEECHHHHH
T ss_pred             Hhh-ccCCEEEEecccc-CCCcce-EEEECCHHHHH
Confidence            222 3689999999999 887866 77777765544

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.27  E-value=4.1e-11  Score=115.37  Aligned_cols=174  Identities=10%  Similarity=0.011  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCCCCeEEEcCCcC--HHHHHHHHHc-----CCc
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFRGNFYMTIIGEE--LDYVREFASF-----KES  223 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~Gd~ivS~~eH~--~~~ir~la~~-----~G~  223 (344)
                      ......+.|+.|+++++.+.. .+|+||+|+|+|+++++.   .+. .+|..++..-.+|  ...+..+...     .+.
T Consensus        82 ~~~~~~~l~~~la~~~~~~~~-~~v~~~~g~~~a~~~~~~~a~~~~-~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~  159 (426)
T 1sff_A           82 AYEPYLELCEIMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAAT-KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGM  159 (426)
T ss_dssp             ECHHHHHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHH-TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTS
T ss_pred             CCHHHHHHHHHHHHhCCcccc-cEEEEeCchHHHHHHHHHHHHHhh-CCCeEEEECCCcCCCchHhhhhcCCcccccccc
Confidence            345678899999999942321 279999999999999876   442 3453344444444  2222222110     011


Q ss_pred             -----EEEEEeCCC----CCCccCHHHHHHHhhhcCCCCCeeEEEEeC-ccc-ccccc----HHHHH-HHHhCCcEEEec
Q 035915          224 -----KVILAPEAW----LDLRIKGSQLSQYFRRKCKHTPKGLFSYPA-DIN-GTRYS----MHWIS-EAHRNSWHVLLD  287 (344)
Q Consensus       224 -----kV~~vp~~~----~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a-vSN-G~i~P----l~~Ia-~ar~~g~~vlvD  287 (344)
                           .+..+|.+.    .++.++.++|++.++......++++|.+.. .+| |.+.|    ++.|. .|+++|+++++|
T Consensus       160 ~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D  239 (426)
T 1sff_A          160 GLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD  239 (426)
T ss_dssp             CCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                 266677653    112367888988886310001467787754 345 97777    76665 468999999999


Q ss_pred             cccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCccc
Q 035915          288 ATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~~  335 (344)
                      .+|+ + +..    .++.....+|++++  +|+ || | |  +|++++++++.+.
T Consensus       240 e~~~~~-~~~g~~~~~~~~~~~~di~s~--sK~-~~-~-GlriG~~~~~~~~~~~  288 (426)
T 1sff_A          240 EVQSGA-GRTGTLFAMEQMGVAPDLTTF--AKS-IA-G-GFPLAGVTGRAEVMDA  288 (426)
T ss_dssp             CTTTTT-TTTSSSSGGGGTTSCCSEEEE--CGG-GG-T-SSCCEEEEEEHHHHTT
T ss_pred             chhhcc-CcccchhhhhhcCCCCCEEEE--ccc-cc-C-CCceEEEEEcHHHHhh
Confidence            9999 5 532    13333456898755  599 88 6 7  6999998865443

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.26  E-value=3.9e-11  Score=118.20  Aligned_cols=162  Identities=7%  Similarity=-0.065  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHc-CCC-----CCCCeEEE--eCCHHHHHHHHHh--hCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcE
Q 035915          158 EIQARNKVLKHC-GLP-----DDEYLVLF--TPNYRDAMMLVGE--SYPFFRGNFYM-TIIGEEL--DYVREFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~L-ga~-----p~ey~VVF--TsnaTeAlnlva~--sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~k  224 (344)
                      +.+.|+.+++++ |++     ++  +|+|  |+|+|+|+++++.  .+ +.+|+.|+ ....|..  ..++.+++..|++
T Consensus        96 ~~~lr~~ia~~l~g~~~~~~~~~--~i~~~~t~ggt~al~l~~~~~~~-~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~  172 (448)
T 3meb_A           96 FPLFLEAAQFLMFGKDSKAAQEG--RIASCQSLSGTGSLHIGFEFLHL-WMPKAEFYMPSTTWPNHYGIYDKVFNKLKVP  172 (448)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHHHHHHHHHHHHHHH-HCTTCCEEEESSCCTHHHHHHHHHHCTTTSC
T ss_pred             hHHHHHHHHHHhcCCCccccCcC--cEEEEECCcHHHHHHHHHHHHHH-hCCCCEEEECCCCCHhHHHHHHhhHHhCCCe
Confidence            567899999988 876     44  7999  9999999998543  22 35788754 5555552  2222122267999


Q ss_pred             EEEEeC-CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCCc
Q 035915          225 VILAPE-AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGED  296 (344)
Q Consensus       225 V~~vp~-~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~~  296 (344)
                      ++.+|. +.. ++.++.++|++.+++.  ..++.++.++..+|  |.++|.+.   |. .|+++|+++++|.++.-.+..
T Consensus       173 v~~~~~~~~~~~~~~d~e~l~~~l~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~  250 (448)
T 3meb_A          173 YKEYTYLRKDGELEIDFSNTKKDIQSA--PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG  250 (448)
T ss_dssp             CEEECCBCTTSCSSBCHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS
T ss_pred             EEEEeccccccCCCcCHHHHHHHHHhC--CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence            999998 443 3678999999998752  12467888777776  99999865   43 358899999999995531443


Q ss_pred             cCC-----CC---CCCC-cEEEEccccCCCCCCCc--eEEE
Q 035915          297 RLN-----LA---LHRP-DFVLCNLDNTQNAQPSK--ITCL  326 (344)
Q Consensus       297 ~LD-----Ls---~l~~-DFvv~S~HK~l~G~P~G--iG~L  326 (344)
                      +++     +.   ..+. .+++.|++|. || +.|  +|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g-~~G~RiG~l  289 (448)
T 3meb_A          251 SFEADAFAVRMFVDAGVEVLVAQSFSKN-FG-LYGERIGCL  289 (448)
T ss_dssp             CHHHHTHHHHHHHHTTCCEEEEEECTTT-SC-CGGGCCEEE
T ss_pred             CcccCchhHHHHhhcCCcEEEEeccccc-CC-Cccccceee
Confidence            321     11   1233 4779999999 88 447  8887

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.26  E-value=1.9e-11  Score=118.76  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHH--HHHHhhCC--CCCC---------CeE-EEcCCcCHHHHHHHHHcCCc
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAM--MLVGESYP--FFRG---------NFY-MTIIGEELDYVREFASFKES  223 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAl--nlva~sl~--~~~G---------d~i-vS~~eH~~~~ir~la~~~G~  223 (344)
                      ..+.|+.||+++|++++  +|+||+|+|+++  ++++..+.  +.+|         +.+ +..-.|+.  ....++..|+
T Consensus        78 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~--~~~~~~~~g~  153 (422)
T 3d6k_A           78 IADIRELWAEALGLPAD--LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDR--HFTITEHFGF  153 (422)
T ss_dssp             CHHHHHHHHHHHTCCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH--HHHHHHHHTC
T ss_pred             CHHHHHHHHHHhCCChh--HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHH--HHHHHHHcCC
Confidence            46799999999999876  799999999997  77777652  1123         344 34444442  2333445699


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEE-EeCccc--cccccHHHHHH----HH-hCCcEEEecccccC--c
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFS-YPADIN--GTRYSMHWISE----AH-RNSWHVLLDATALV--V  293 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa-~~avSN--G~i~Pl~~Ia~----ar-~~g~~vlvDAaQa~--~  293 (344)
                      +++.+|.+. ++ ++.++|++.+++.    ++++|. ++..+|  |.++|.+.+.+    |+ ++|+++++|.+++.  .
T Consensus       154 ~~~~v~~~~-~g-~d~~~l~~~l~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~  227 (422)
T 3d6k_A          154 EMINVPMTD-EG-PDMGVVRELVKDP----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL  227 (422)
T ss_dssp             EEEEEEEET-TE-ECHHHHHHHHTST----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             EEEecCCCC-CC-CCHHHHHHHHhcC----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccccc
Confidence            999999875 34 8999999988641    467766 565566  99999975543    35 78999999999973  0


Q ss_pred             CCc---cCCC-------CCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          294 GED---RLNL-------ALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~---~LDL-------s~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      +..   ..++       ...+.++++.|++|+ .+ | -++|++++++++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~-~GlriG~~~~~~~l~~  277 (422)
T 3d6k_A          228 SDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH-AGSGVSFFASSKENIE  277 (422)
T ss_dssp             SSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SC-TTSSCEEEECCHHHHH
T ss_pred             CCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cC-cccceEEEEeCHHHHH
Confidence            211   1122       234568999999997 44 6 23899998765543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.26  E-value=5.4e-11  Score=114.65  Aligned_cols=170  Identities=9%  Similarity=-0.017  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          159 IQARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       159 e~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .+.|+.+++++    +.+. ..+|+||+|+|+|+++++.++ +.+||.|+ ..-.|+.  ....++..|++++.+|.+..
T Consensus        83 ~~lr~~ia~~~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~v~~~~~  158 (418)
T 3rq1_A           83 PDFLCAAEKECFGNFRPEG-HIRSIATAGGTGGIHHLIHNY-TEPGDEVLTADWYWGA--YRVICSDTGRTLVTYSLFDE  158 (418)
T ss_dssp             HHHHHHHHHHHHGGGCCSS-EEEEEEESHHHHHHHHHHHHH-SCTTCEEEEESSCCTH--HHHHHHHTTCEEEEECSBCT
T ss_pred             HHHHHHHHHHHhcccCccc-cccEEECCchHHHHHHHHHHh-cCCCCEEEECCCCchh--HHHHHHHcCCEEEEEeeeCC
Confidence            45677777766    3221 116999999999999999887 57899865 3444442  23345567999999998654


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCc-cc--cccccHHHHHH----HH------hCCcEEEecccccCcCCc----
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPAD-IN--GTRYSMHWISE----AH------RNSWHVLLDATALVVGED----  296 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~av-SN--G~i~Pl~~Ia~----ar------~~g~~vlvDAaQa~~G~~----  296 (344)
                      ++.++.++|++.+++......+.++.+... +|  |.++|.+.+.+    |+      ++|+++++|.++.-.+..    
T Consensus       159 ~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~  238 (418)
T 3rq1_A          159 HNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEV  238 (418)
T ss_dssp             TSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHH
T ss_pred             CCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHH
Confidence            557899999988864100012346666644 45  99999976653    24      789999999997421211    


Q ss_pred             -c-C-CCCCCCCc---EEEEccccCCCCCCC-ceEEEEE---eCCCc
Q 035915          297 -R-L-NLALHRPD---FVLCNLDNTQNAQPS-KITCLLI---RKKSF  333 (344)
Q Consensus       297 -~-L-DLs~l~~D---Fvv~S~HK~l~G~P~-GiG~L~V---r~~~~  333 (344)
                       . + .+..+..|   +++.|++|. ||.|. .+|++++   +++..
T Consensus       239 ~~~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~r~G~~~~~~~~~~~~  284 (418)
T 3rq1_A          239 RAFFNKFSHLPKEILTCVCYSLSKG-FTMYGQRVGAMIGISDDEEIA  284 (418)
T ss_dssp             HGGGGGGTTCCTTEEEEEEEESTTT-TTCCSSCCEEEEEEESSHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEEeCCCC-CcCcCCcceEEEEEeCCHHHH
Confidence             0 1 11223445   788899999 87551 3788887   55443

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.24  E-value=4.4e-11  Score=115.08  Aligned_cols=162  Identities=10%  Similarity=-0.009  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEE--eCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLF--TPNYRDAMMLVGESY-PFFRGNFYM-TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVF--TsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+.|+.++++++.      +++  +|+|  |+|+|+|+++++..+ .+.+|+.++ ..-.|+.  +...++..|++++.
T Consensus        75 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~  150 (412)
T 1yaa_A           75 LPSLTSNAAKIIFGTQSDALQED--RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN--HMAIFENQGLKTAT  150 (412)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT--HHHHHHTTTCCEEE
T ss_pred             cHHHHHHHHHHHhcCCCCCCCcc--eEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCcc--HHHHHHHcCceEEE
Confidence            56789999998832      455  6999  999999999874321 124788754 4445552  23345567999999


Q ss_pred             EeC-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCc----
Q 035915          228 APE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGED----  296 (344)
Q Consensus       228 vp~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~----  296 (344)
                      +|. +..+..++.++|++.+++..  ..+.++.++..+|  |.++|.+.+   . .|+++|+++++|.++.-.+..    
T Consensus       151 v~~~~~~~~~~d~~~l~~~l~~~~--~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  228 (412)
T 1yaa_A          151 YPYWANETKSLDLNGFLNAIQKAP--EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK  228 (412)
T ss_dssp             EECEETTTTEECHHHHHHHHHHSC--TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred             EeeecCCCCccCHHHHHHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence            987 43245689999999887521  1256666677766  999987543   2 358899999999998531211    


Q ss_pred             ---cC-CCCCCC----CcEEEEccccCCCCCCCc--eEEEE
Q 035915          297 ---RL-NLALHR----PDFVLCNLDNTQNAQPSK--ITCLL  327 (344)
Q Consensus       297 ---~L-DLs~l~----~DFvv~S~HK~l~G~P~G--iG~L~  327 (344)
                         ++ ++....    -++++.|++|+ || |.|  +|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~-~~GlriG~~~  267 (412)
T 1yaa_A          229 DAYAVRLGVEKLSTVSPVFVCQSFAKN-AG-MYGERVGCFH  267 (412)
T ss_dssp             HTHHHHHHHHHTTTTCCEEEEEECTTT-SC-CGGGCEEEEE
T ss_pred             hhHHHHHHHhcCCCCcceEEEeccCCC-CC-CcCCcceEEE
Confidence               22 332223    35889999999 88 768  69988

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.24  E-value=2.1e-11  Score=114.74  Aligned_cols=161  Identities=11%  Similarity=-0.017  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC--eEEE-cCCcCHH-HHHHHHHcCCcEEEEEeCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN--FYMT-IIGEELD-YVREFASFKESKVILAPEAW  232 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd--~ivS-~~eH~~~-~ir~la~~~G~kV~~vp~~~  232 (344)
                      ...+.|+++++++|++    ..+|++|+|+|+.+++.++. .+|+  .++. ...|... .....+...|+++..+|.+ 
T Consensus        48 ~~~~l~~~la~~~~~~----~~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-  121 (357)
T 3lws_A           48 IIEPFEQKFADVLGMD----DAVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAA-  121 (357)
T ss_dssp             THHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCT-
T ss_pred             HHHHHHHHHHHHhCCC----cEEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhccCcEEEEecCC-
Confidence            4577899999999984    24667889999988777652 3455  5554 3333311 0011233458888888753 


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccH---HHHH-HHHhCCcEEEeccccc---Cc--CCccCCC
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSM---HWIS-EAHRNSWHVLLDATAL---VV--GEDRLNL  300 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa---~~--G~~~LDL  300 (344)
                       ++.++.++|+++.       +++++.+...+|   |.++|.   +.|. .|+++|+++++|.+|.   ..  |....++
T Consensus       122 -~~~~d~~~l~~~~-------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~  193 (357)
T 3lws_A          122 -DRLMTLDEIKALP-------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEI  193 (357)
T ss_dssp             -TSCCCHHHHHTCC-------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHH
T ss_pred             -CCCcCHHHHhcCc-------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHH
Confidence             4678999888652       256777665553   888874   4444 3589999999999886   20  2221222


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      . ..+|.+++|+||+ |++|.| |+++.++++.+
T Consensus       194 ~-~~~d~~~~s~sK~-~~~~~g-g~~~~~~~~~~  224 (357)
T 3lws_A          194 A-GLFDSIYISFYKG-LGGIAG-AILAGPAAFCQ  224 (357)
T ss_dssp             H-TTSSEEEEESSST-TCCSSC-EEEEECHHHHH
T ss_pred             H-hcCCEEEEecccc-CCCCce-EEEEcCHHHHH
Confidence            2 3579999999999 877988 88887765543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.23  E-value=5e-11  Score=113.76  Aligned_cols=161  Identities=13%  Similarity=0.034  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC---------CCCCeEE-EcCCcC--HHHHHHHHHcCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF---------FRGNFYM-TIIGEE--LDYVREFASFKE  222 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~---------~~Gd~iv-S~~eH~--~~~ir~la~~~G  222 (344)
                      ....++.++.+++++|  ++  .|+||+|+|+|+++++..+..         ..++.|+ ....||  ......+....+
T Consensus        77 ~~~~~~l~~~la~~~g--~~--~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  152 (392)
T 3ruy_A           77 SDQLGPWYEKVAKLTN--KE--MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEE  152 (392)
T ss_dssp             ETTHHHHHHHHHHHHT--CS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTT
T ss_pred             CHHHHHHHHHHHHhcC--CC--EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChh
Confidence            3456889999999998  34  699999999999987764311         1245654 455665  222212111100


Q ss_pred             ---------cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEe
Q 035915          223 ---------SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       223 ---------~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                               ..+..++.+      +.++|++++++     ++++|.+...+|  |.++|    ++.|.+ |+++|+++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~  221 (392)
T 3ruy_A          153 YKRGFGPMLPGIIVIPYG------DLEALKAAITP-----NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVA  221 (392)
T ss_dssp             TTTTCCSCCSSEEEECTT------CHHHHHHHCCT-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred             hccccCCCCCCCeeeCcc------cHHHHHHHhcc-----CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence                     124444432      57889888864     588999887776  99999    977765 6999999999


Q ss_pred             ccccc-CcCC----ccCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          287 DATAL-VVGE----DRLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       287 DAaQa-~~G~----~~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |.+|+ + |.    ..++.....+|++++|  |. +++- -.+|+++++++..+
T Consensus       222 De~~~~~-~~~g~~~~~~~~~~~~d~~~~S--K~-l~gG~~~~G~~~~~~~~~~  271 (392)
T 3ruy_A          222 DEIQTGL-GRTGKVFACDWDNVTPDMYILG--KA-LGGGVFPISCAAANRDILG  271 (392)
T ss_dssp             ECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTTTSCCEEEEECHHHHT
T ss_pred             eechhCC-CccccchhhhccCCCCCEEEEc--hh-hhCChhhhEEEEECHHHHh
Confidence            99996 4 43    2233334568999998  98 6631 23899999876544

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.23  E-value=2.9e-11  Score=116.18  Aligned_cols=163  Identities=9%  Similarity=-0.071  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHc-CC-----CCCCCeEEE--eCCHHHHHHHHHhhCC-CCCC-----CeEE-EcCCcCHHHHHHHHHcCC
Q 035915          158 EIQARNKVLKHC-GL-----PDDEYLVLF--TPNYRDAMMLVGESYP-FFRG-----NFYM-TIIGEELDYVREFASFKE  222 (344)
Q Consensus       158 le~AR~~IA~~L-ga-----~p~ey~VVF--TsnaTeAlnlva~sl~-~~~G-----d~iv-S~~eH~~~~ir~la~~~G  222 (344)
                      ..+.|+.+++++ +.     +++  +|+|  |+|+|+|+++++..+. +.+|     +.|+ ..-.|+.  +...++..|
T Consensus        76 ~~~lr~~la~~~~~~~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~--~~~~~~~~g  151 (412)
T 1ajs_A           76 LAEFRTCASRLALGDDSPALQEK--RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN--HNGVFTTAG  151 (412)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH--HHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcCCCCccCCC--cEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH--HHHHHHHcC
Confidence            467899999999 54     555  6999  9999999999864221 3467     7754 4555553  233445578


Q ss_pred             cE-EEEEeCCC-CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcC
Q 035915          223 SK-VILAPEAW-LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVG  294 (344)
Q Consensus       223 ~k-V~~vp~~~-~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G  294 (344)
                      ++ ++.+|.+. .+..++.++|++.+++.  ..++.++.++..+|  |.++|.+.+   . .|+++|+++++|.++.-.+
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~  229 (412)
T 1ajs_A          152 FKDIRSYRYWDTEKRGLDLQGFLSDLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFA  229 (412)
T ss_dssp             CSCEEEEECEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTT
T ss_pred             CceeEEEeeecCCCCccCHHHHHHHHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence            99 98888731 23568999999988752  12467777777666  999988643   3 3578999999999965313


Q ss_pred             Cc-------cCC-CCC-CCCcEEEEccccCCCCCCCc--eEEEEE
Q 035915          295 ED-------RLN-LAL-HRPDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       295 ~~-------~LD-Ls~-l~~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                      ..       ++. +.. .+-++++.|++|. || |.|  +|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~-~~G~riG~~~~  272 (412)
T 1ajs_A          230 SGNLEKDAWAIRYFVSEGFELFCAQSFSKN-FG-LYNERVGNLTV  272 (412)
T ss_dssp             TSCHHHHTHHHHHHHHTTCCEEEEEECTTT-SC-CGGGCEEEEEE
T ss_pred             CCcccccchHHHHHhccCCcEEEEEecccc-cC-CCCcceEEEEE
Confidence            32       121 211 1234899999998 88 668  899998

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.23  E-value=5.4e-11  Score=115.95  Aligned_cols=161  Identities=9%  Similarity=0.021  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcE--------
Q 035915          158 EIQARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESK--------  224 (344)
Q Consensus       158 le~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~k--------  224 (344)
                      ..+.|++|++++    +++++  +|+||+|+|++++++ .++ +.+||.|+ ....|+.  ....++..|.+        
T Consensus       113 ~~~lr~~ia~~~~~g~~~~~~--~i~~t~G~~~al~~~-~~l-~~~gd~Vl~~~p~~~~--~~~~~~~~g~~g~~~~~~~  186 (449)
T 3qgu_A          113 QGALREAVASTFYGHAGRAAD--EIFISDGSKCDIARI-QMM-FGSKPTVAVQDPSYPV--YVDTSVMMGMTGDHNGTGF  186 (449)
T ss_dssp             CHHHHHHHHHHHHTTTTCCGG--GEEEESCHHHHHHHH-HHH-HCSSSCEEEEESCCTH--HHHHHHHHTCSCCBCSSSB
T ss_pred             cHHHHHHHHHHHHcCCCCCHH--HEEEccCHHHHHHHH-HHH-hCCCCEEEEcCCCChh--HHHHHHHcCCccccccccc
Confidence            467899999998    77765  799999999999998 555 46788854 5555552  12223334666        


Q ss_pred             --EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---
Q 035915          225 --VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---  293 (344)
Q Consensus       225 --V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---  293 (344)
                        ++.+|.+..+ .+..+ +.+.       .++++|.+...+|  |.++|.+.+.    .|+++|+++++|.+|+..   
T Consensus       187 ~~~~~~~~~~~~-~~~~~-~~~~-------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~  257 (449)
T 3qgu_A          187 DGIEYMVCNPDN-HFFPD-LSKA-------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISN  257 (449)
T ss_dssp             TTEEEEECCGGG-TTCCC-GGGC-------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCC
T ss_pred             ceeEEEeccccc-CCcCC-hhHc-------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcC
Confidence              8888876432 12211 1111       2466777766666  9999965443    357899999999999851   


Q ss_pred             CCccCCCCC----CCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          294 GEDRLNLAL----HRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       294 G~~~LDLs~----l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |..+.++..    .+.++++.|++|+ ||.| .++|+++++++..+
T Consensus       258 ~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~  302 (449)
T 3qgu_A          258 PDCPKTIYEIPGADEVAIETCSFSKY-AGFTGVRLGWTVVPKALKY  302 (449)
T ss_dssp             TTSCSSGGGSTTGGGTEEEEEECSGG-GTCTTCCCEEEECCTTCBC
T ss_pred             CCCCCCHhhccCCCCcEEEEecchhh-cCCccceeEEEecCHHHHh
Confidence            122334332    2467999999999 8733 24899999888765

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.23  E-value=9.7e-11  Score=124.08  Aligned_cols=168  Identities=11%  Similarity=0.027  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      ...+.++++.+|+++|++.   .+++|+|+|.|++.++.++ ..+||.|+. ...|.+  +...+...|+++++++.++.
T Consensus       194 ~g~i~eaE~~lA~~fGa~~---a~~v~nGts~An~~ai~al-~~pGD~VLv~r~~H~S--~~~~l~lsGa~pv~v~~~~~  267 (715)
T 3n75_A          194 SGPHKEAEQYIARVFNADR---SYMVTNGTSTANKIVGMYS-APAGSTILIDRNCHKS--LTHLMMMSDVTPIYFRPTRN  267 (715)
T ss_dssp             BTHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHH--HHHHHHHSCCEEEEECCCBC
T ss_pred             cHHHHHHHHHHHHHhCCCC---ceEECcHHHHHHHHHHHHh-CCCCCEEEECCCccHH--HHHHHHHcCCEEEEEecccc
Confidence            3468999999999999952   4666677778988888877 578999764 454542  22223456999999876532


Q ss_pred             C----Ccc-----CHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccccHHHHHHH-HhCCcEEEecccccCcCC--ccC--
Q 035915          234 D----LRI-----KGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRYSMHWISEA-HRNSWHVLLDATALVVGE--DRL--  298 (344)
Q Consensus       234 ~----g~i-----~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~Pl~~Ia~a-r~~g~~vlvDAaQa~~G~--~~L--  298 (344)
                      .    +.+     +.++|++++++..+...++++.++.-| .|.+.|++.|.++ +.+  .+++|.||+. +.  .+.  
T Consensus       268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~--~livDEAH~~-~~~f~~~~~  344 (715)
T 3n75_A          268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVK--SIHFDSAWVP-YTNFSPIYE  344 (715)
T ss_dssp             TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCS--EEEEECTTCT-TGGGSGGGT
T ss_pred             ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcC--cEEEcccccc-ccccCCccc
Confidence            1    123     789999999753211112356665443 3999999888764 543  3789999987 63  121  


Q ss_pred             CCCCC----CCcEE---EEccccCCCCCCCceEEEEEeCCC
Q 035915          299 NLALH----RPDFV---LCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       299 DLs~l----~~DFv---v~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +.+.+    ++|++   +.|+||+ +++|++.|++.++++.
T Consensus       345 ~~~al~~g~~aD~vii~~~S~hKt-L~gltqgs~i~v~~~i  384 (715)
T 3n75_A          345 GKCGMSGGRVEGKVIYETQSTHKL-LAAFSQASMIHVKGDV  384 (715)
T ss_dssp             TSSTTSSSCCTTCEEEEEECHHHH-SSCCTTCEEEEEESCC
T ss_pred             cccccccCcCCCEEEEEEeccccc-ccCCCCeeEEEeCchh
Confidence            12222    26876   9999999 8889999999998763

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.22  E-value=7.1e-11  Score=112.42  Aligned_cols=164  Identities=10%  Similarity=-0.087  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYMT-IIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.++++++.      +++..+|+||+|+|+|++++++.+. +.+||.++. .-.|+.  ....++..|++++.+|
T Consensus        72 ~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~  149 (397)
T 3fsl_A           72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWEN--HVAIFAGAGFEVSTYP  149 (397)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHH--HHHHHHHTTCCEEEEC
T ss_pred             hHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHHcCCceEEEe
Confidence            45688889998865      3331169999999999999854321 457888653 333332  3344556799999998


Q ss_pred             CC-CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCcc-----
Q 035915          230 EA-WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGEDR-----  297 (344)
Q Consensus       230 ~~-~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~~-----  297 (344)
                      .. ..++.++.++|++.++..  ..+++++.++..+|  |.++|.+.+   . .|+++|+++++|.+++- ....     
T Consensus       150 ~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~  226 (397)
T 3fsl_A          150 WYDEATNGVRFNDLLATLKTL--QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQG-FGAGMEEDA  226 (397)
T ss_dssp             CEETTTTEECHHHHHHHHTTC--CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT-SSSCTTGGG
T ss_pred             eeeccCCcCcHHHHHHHHHhC--CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchh-hccCccccc
Confidence            72 124678999999998732  12467888877666  999888643   3 35889999999999875 3321     


Q ss_pred             CC---C-CCCCCcEEEEccccCCCCCCCc--eEEEEE
Q 035915          298 LN---L-ALHRPDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       298 LD---L-s~l~~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                      ..   + ...+.++++.|+.|. || +.|  +|++++
T Consensus       227 ~~~~~~~~~~~~~i~~~S~SK~-~~-~~G~riG~~~~  261 (397)
T 3fsl_A          227 YAIRAIASAGLPALVSNSFSKI-FS-LYGERVGGLSV  261 (397)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTT-TT-CGGGCCEEEEE
T ss_pred             HHHHHHHhcCCCEEEEeccccc-cc-CcCCCeeEEEE
Confidence            01   1 123456888999999 87 557  788876

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.21  E-value=1.1e-10  Score=111.79  Aligned_cols=156  Identities=8%  Similarity=-0.050  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC------CCCCeE-EEcCCcC--HH-HHHHHHHcCCcE
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF------FRGNFY-MTIIGEE--LD-YVREFASFKESK  224 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~------~~Gd~i-vS~~eH~--~~-~ir~la~~~G~k  224 (344)
                      ....++.++++++++|.  +  .|+||+|+|+|+++++..+..      ..++.+ +..-.+|  .. .++    ..|.+
T Consensus        81 ~~~~~~l~~~la~~~g~--~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~----~~g~~  152 (397)
T 2ord_A           81 NRPQMELAELLSKNTFG--G--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT----ATGQP  152 (397)
T ss_dssp             EHHHHHHHHHHHHTTTS--C--EEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH----HSBCH
T ss_pred             CHHHHHHHHHHHHhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh----ccCCh
Confidence            45678899999999984  3  699999999999988876521      123554 4444444  22 221    12333


Q ss_pred             ------------EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cc-cc---cHHHHHH-HHhCCcEEE
Q 035915          225 ------------VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GT-RY---SMHWISE-AHRNSWHVL  285 (344)
Q Consensus       225 ------------V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~-i~---Pl~~Ia~-ar~~g~~vl  285 (344)
                                  +..+|.+      +.++|++.+++     ++++|.+...+|  |. .+   +++.|.+ |+++|++++
T Consensus       153 ~~~~~~~p~~~~~~~~~~~------d~~~l~~~l~~-----~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li  221 (397)
T 2ord_A          153 KYQKPFEPLVPGFEYFEFN------NVEDLRRKMSE-----DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLV  221 (397)
T ss_dssp             HHHGGGCSCCTTEEEECTT------CHHHHHHHCCT-----TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred             hhccccCCCCCCeeEecCC------CHHHHHHHhhc-----CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence                        6666642      57888888864     478888887766  98 44   4555543 588999999


Q ss_pred             eccccc-CcCCc--cCCCCC--CCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          286 LDATAL-VVGED--RLNLAL--HRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       286 vDAaQa-~~G~~--~LDLs~--l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +|.+|+ + +..  .+.+..  ..+|++++  +|+ |+++.++|+++++++..
T Consensus       222 ~De~~~~~-~~~g~~~~~~~~~~~~d~~s~--sK~-~~~G~r~G~~~~~~~~~  270 (397)
T 2ord_A          222 FDEVQCGM-GRTGKLFAYQKYGVVPDVLTT--AKG-LGGGVPIGAVIVNERAN  270 (397)
T ss_dssp             EECTTTTT-TTTSSSSHHHHHTCCCSEEEE--CGG-GGTTSCCEEEEECSTTC
T ss_pred             EEecccCC-ccCccchhhhhhCCCCCeeee--ccc-cCCCcCeEEEEEchHhc
Confidence            999997 3 422  222222  24898755  699 87445699999988764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.20  E-value=8.5e-11  Score=119.32  Aligned_cols=164  Identities=6%  Similarity=-0.024  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHc----C--CCCC-CCeEEEeCCHHHHHHHHHhhC----CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEE
Q 035915          159 IQARNKVLKHC----G--LPDD-EYLVLFTPNYRDAMMLVGESY----PFFRGNFYM-TIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       159 e~AR~~IA~~L----g--a~p~-ey~VVFTsnaTeAlnlva~sl----~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~  226 (344)
                      .+.|+.+++++    +  ...+ ..+|+||+|+|+|+++++.++    -+.+||.|+ ....|+.  +...++..|++++
T Consensus       141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~--~~~~~~~~g~~~~  218 (533)
T 3f6t_A          141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTP--YLRIPELKDYELV  218 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHH--HHTSGGGGGSEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHH--HHHHHHHcCCeEE
Confidence            34566666665    2  2221 127999999999999999873    367899865 4555442  2333344688888


Q ss_pred             EEeCCC---CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH---H-HH-hCCcEEEecccccCcCCc
Q 035915          227 LAPEAW---LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS---E-AH-RNSWHVLLDATALVVGED  296 (344)
Q Consensus       227 ~vp~~~---~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia---~-ar-~~g~~vlvDAaQa~~G~~  296 (344)
                      .+|.+.   .+..++.++|++.+++     ++++|.+...+|  |.++|.+.+.   + |+ ++|+++++|.+++-....
T Consensus       219 ~v~~~~~~~~~~~~d~~~l~~~l~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~  293 (533)
T 3f6t_A          219 EVDLHSYEKNDWEIEPNEIEKLKDP-----SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN  293 (533)
T ss_dssp             EECCCEETTTTSEECHHHHHHHSCT-----TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT
T ss_pred             EEEecCCcccCCCCCHHHHHHHhCC-----CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC
Confidence            888752   3457899999998864     478888876666  9999997443   2 45 579999999998741211


Q ss_pred             cCCCCC--CCCcEEEEccccCCCCCCCc--eEEEEEeCC
Q 035915          297 RLNLAL--HRPDFVLCNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       297 ~LDLs~--l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      ...+..  .+.++++.|++|. || +.|  +|+++++++
T Consensus       294 ~~~~~~~~~~~~i~~~S~SK~-~g-~~G~RiG~l~~~~~  330 (533)
T 3f6t_A          294 FKSIYSVVPYNTMLVYSYSKL-FG-CTGWRLGVIALNEK  330 (533)
T ss_dssp             CCCHHHHSGGGEEEEEESHHH-HT-CGGGCEEEEEEESS
T ss_pred             ccCHhhcCCCCEEEEecCccc-CC-CcccceEEEEECcH
Confidence            222211  1345999999999 88 558  899999887

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.20  E-value=6.3e-11  Score=114.92  Aligned_cols=159  Identities=12%  Similarity=0.052  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCC--------
Q 035915          158 EIQARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKE--------  222 (344)
Q Consensus       158 le~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G--------  222 (344)
                      ..+.|+.|++++    +++++  +|+||+|+|++++++ ..+ +.+||.|+ ....|+.  ..++ .+...|        
T Consensus       100 ~~~l~~~ia~~~~~~~~~~~~--~i~~t~G~~~al~~l-~~l-~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~  174 (432)
T 3ei9_A          100 AKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRL-QVM-FGSNVTIAVQDPSYPAYVDSSV-IMGQTGQFNTDVQK  174 (432)
T ss_dssp             CHHHHHHHHHHHHTTTTCCGG--GEEEESCHHHHHHHH-HHH-HCTTCCEEEEESCCTHHHHHHH-HHTCSCCEETTTTE
T ss_pred             CHHHHHHHHHHHHccCCCCcc--eEEECCChHHHHHHH-HHH-cCCCCEEEEeCCCCHHHHHHHH-HcCCcccccccccc
Confidence            466788888886    77765  799999999999986 443 35788854 5666662  2332 222223        


Q ss_pred             -cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc--
Q 035915          223 -SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV--  293 (344)
Q Consensus       223 -~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~--  293 (344)
                       .++..+|.+..+ .+..+ +++  .     .++++|.+...+|  |.++|.+.+.    .|+++|+++++|.+|+-.  
T Consensus       175 ~~~~~~~~~~~~~-~~~~~-l~~--~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~  245 (432)
T 3ei9_A          175 YGNIEYMRCTPEN-GFFPD-LST--V-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS  245 (432)
T ss_dssp             ETTCEEEECCGGG-TTSCC-GGG--C-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             cCceEEeccCccc-CCcCC-hhh--C-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhcc
Confidence             367777776421 11111 221  1     2467777776666  9999886553    257899999999999930  


Q ss_pred             CCccCCCCC----CCCcEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          294 GEDRLNLAL----HRPDFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       294 G~~~LDLs~----l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                      +..+..+..    .+.++++.|++|+ ||.| |  +|+++++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~-G~r~G~~~~~~~~  288 (432)
T 3ei9_A          246 DDNPRSIFEIPGAEEVAMETASFSNY-AGFT-GVRLGWTVIPKKL  288 (432)
T ss_dssp             SSCCSSGGGSTTGGGTEEEEEESHHH-HCTT-TTCCEEEECCTTC
T ss_pred             CCCCCChhhcCCCCCeEEEEecchhc-cCCc-ccceEEEEEChHH
Confidence            333333332    2467999999999 8733 5  8999998877

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.19  E-value=1.6e-10  Score=112.01  Aligned_cols=164  Identities=10%  Similarity=-0.076  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      ..+.|+.++++++.      +++..+|+||+|+|+|++++++.+. +.+||.|+ ..-.|+.  ....++..|++++.+|
T Consensus        94 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~  171 (420)
T 4f4e_A           94 IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWEN--HRALFDMAGFEVVAYP  171 (420)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH--HHHHHHHTTCCEEEEE
T ss_pred             cHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHh--HHHHHHHcCCeEEEee
Confidence            45678888888754      2221169999999999999854221 45788865 4444332  2334455799999998


Q ss_pred             C-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccC----
Q 035915          230 E-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRL----  298 (344)
Q Consensus       230 ~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~L----  298 (344)
                      . +..+..++.++|++.++..  ..+++++.++..+|  |.+++.+.+.    .|+++|+++++|.++.- .....    
T Consensus       172 ~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~-~~~~~~~~~  248 (420)
T 4f4e_A          172 YYDAKTNGVNFDGMLAALNGY--EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQG-FGESIEADA  248 (420)
T ss_dssp             CEETTTTEECHHHHHHHHTTC--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-SSSCTTGGG
T ss_pred             eeccccCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccccc-ccCCcchhh
Confidence            8 2224678999999998731  12578888887776  9999885443    35789999999999764 22111    


Q ss_pred             -C---C-CCCCCcEEEEccccCCCCCCCc--eEEEEE
Q 035915          299 -N---L-ALHRPDFVLCNLDNTQNAQPSK--ITCLLI  328 (344)
Q Consensus       299 -D---L-s~l~~DFvv~S~HK~l~G~P~G--iG~L~V  328 (344)
                       .   + ...+.++++.|++|. || +.|  +|++++
T Consensus       249 ~~~~~~~~~~~~~i~~~S~SK~-~~-~~G~RiG~~~~  283 (420)
T 4f4e_A          249 AAVRLFAAANLNVFVSSSFSKS-FS-LYGERVGALSI  283 (420)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTT-TT-CGGGCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEeCCcc-Cc-CcCCCcEEEEE
Confidence             1   1 124567999999999 88 557  899875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.17  E-value=6.6e-10  Score=108.02  Aligned_cols=172  Identities=11%  Similarity=0.012  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHcCCC-CCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-c-CCcC-HHHHHHHH-----HcCC----
Q 035915          156 IPEIQARNKVLKHCGLP-DDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-I-IGEE-LDYVREFA-----SFKE----  222 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~-p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~-~eH~-~~~ir~la-----~~~G----  222 (344)
                      ....+.++++++++|++ ++  +|+||+|+|||+++++..+....|+.++. . .-|. ......+.     .+.+    
T Consensus        86 ~~~~~l~~~la~~~~~~~~~--~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~  163 (419)
T 2eo5_A           86 IPQLELAKKLVTYSPGNFQK--KVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPF  163 (419)
T ss_dssp             HHHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCC
T ss_pred             HHHHHHHHHHHHhCCCCcCC--EEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCC
Confidence            34466778999999987 55  79999999999998887431112777653 3 2243 22222111     1112    


Q ss_pred             -cEEEEEeCCCCC----Cc-----------cCHHHHH-HHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HH
Q 035915          223 -SKVILAPEAWLD----LR-----------IKGSQLS-QYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AH  278 (344)
Q Consensus       223 -~kV~~vp~~~~~----g~-----------i~~~~L~-~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar  278 (344)
                       ..+..+|.+...    +.           ++.++|+ +.+++.....++++|.+..++|  |.++|    ++.|.+ |+
T Consensus       164 ~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~  243 (419)
T 2eo5_A          164 MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAK  243 (419)
T ss_dssp             CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHH
Confidence             356777764310    11           3567888 8876310001467777765553  98888    877755 68


Q ss_pred             hCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCc
Q 035915          279 RNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSF  333 (344)
Q Consensus       279 ~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~  333 (344)
                      ++|+++++|.+|+ + |...    ++.....+|++++|  |. ||++ .++|++++++++.
T Consensus       244 ~~~~~li~DE~~~~~-g~~g~~~~~~~~~~~~d~~t~s--K~-~~~G~~riG~~~~~~~~~  300 (419)
T 2eo5_A          244 KYGILLVDDEVQMGL-GRTGKLFAIENFNTVPDVITLA--KA-LGGGIMPIGATIFRKDLD  300 (419)
T ss_dssp             HHTCEEEEECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTTTSCCEEEEEEGGGC
T ss_pred             HcCCEEEEeccccCC-ccCcchhhHHhcCCCCCEEEec--cc-ccCCccceEEEEEchHhh
Confidence            8999999999998 5 5432    23334578998877  88 7755 7799999998765

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.16  E-value=7.2e-10  Score=111.26  Aligned_cols=169  Identities=7%  Similarity=-0.092  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.|+++++      ++++  +|+||+|+|+|+++++..+.+.+||.|+ ....|+.  +...++..|++++.+|.
T Consensus       136 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~  211 (500)
T 3tcm_A          136 IHGLRDAIASGIASRDGFPANAD--DIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPL--YSASIALHGGALVPYYL  211 (500)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCCGG--GEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTH--HHHHHHHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCcc--cEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHh--HHHHHHHcCCEEEEEec
Confidence            3456777777764      5555  7999999999999999988556888865 4555552  23334556999999998


Q ss_pred             CCC-CCccCHHHHHHHhhhcC-CCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc-----c
Q 035915          231 AWL-DLRIKGSQLSQYFRRKC-KHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED-----R  297 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~-----~  297 (344)
                      +.. +..++.++|++.+++.. ...++++|.+...+|  |.++|.+.+.    .|+++|+++++|.++.- ...     .
T Consensus       212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~-~~~~~~~~~  290 (500)
T 3tcm_A          212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE-NIYVDNKKF  290 (500)
T ss_dssp             BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCCTTCCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc-cccCCCCCC
Confidence            753 23689999999887510 011367777776666  9999986543    25889999999999875 221     1


Q ss_pred             CCCC---------CCCCc-EEEEccccCCC-CCCCc--eEEEEE---eCCCc
Q 035915          298 LNLA---------LHRPD-FVLCNLDNTQN-AQPSK--ITCLLI---RKKSF  333 (344)
Q Consensus       298 LDLs---------~l~~D-Fvv~S~HK~l~-G~P~G--iG~L~V---r~~~~  333 (344)
                      .++.         .-+++ +++.|++|. | | +.|  +|++++   ++++.
T Consensus       291 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~-~~g-~~G~R~G~~~~~~~~~~~~  340 (500)
T 3tcm_A          291 HSFKKIVRSLGYGEEDLPLVSYQSVSKG-YYG-ECGKRGGYFEITGFSAPVR  340 (500)
T ss_dssp             CCHHHHHHHTTCSSSCCCEEEEEESSST-TTC-CGGGCCEEEEEESCCTTHH
T ss_pred             CcHHHHHHHhccccCCeEEEEEecCCcc-CCC-CCccceEEEEEeCCCHHHH
Confidence            1111         11222 556799999 7 5 335  688887   55543

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.07  E-value=1.9e-09  Score=103.01  Aligned_cols=160  Identities=12%  Similarity=0.084  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C-----CCCCeEE-EcCCcC--H-HHH--------H
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F-----FRGNFYM-TIIGEE--L-DYV--------R  215 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~-----~~Gd~iv-S~~eH~--~-~~i--------r  215 (344)
                      .....++.++++++++|.  +  .|+||+|+|+|+++++..+. .     ..++.++ ..-.+|  . ..+        +
T Consensus        76 ~~~~~~~l~~~la~~~~~--~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  151 (395)
T 3nx3_A           76 YNENIAAAAKNLAKASAL--E--RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQ  151 (395)
T ss_dssp             BCHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccc
Confidence            345668889999999983  4  69999999999998776531 1     2456654 444444  1 111        0


Q ss_pred             HHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEecc
Q 035915          216 EFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       216 ~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvDA  288 (344)
                      ......+..+..+|.+      +.++|++++++     ++++|.+...+|  |.+.|    ++.|.+ |+++|+++++|.
T Consensus       152 ~~~~~~~~~~~~~~~~------d~~~l~~~l~~-----~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De  220 (395)
T 3nx3_A          152 KPFKPLISGVKFAKYN------DISSVEKLVNE-----KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADE  220 (395)
T ss_dssp             GGGCSCCSCEEEECTT------CHHHHHTTCCT-----TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCCCCCCcEEeCCC------CHHHHHHhccC-----CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            0011123455556543      46788888764     467777766553  88888    777754 689999999999


Q ss_pred             ccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          289 TAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       289 aQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +|+ + |...    .+.....+|++++|  |. ||++.++|+++++++.
T Consensus       221 v~~~~-g~~g~~~~~~~~~~~~d~~t~s--K~-~~~G~~~G~~~~~~~~  265 (395)
T 3nx3_A          221 IQCGM-GRSGKFFAYEHAQILPDIMTSA--KA-LGCGLSVGAFVINQKV  265 (395)
T ss_dssp             TTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GTTTSCCEEEEECHHH
T ss_pred             cccCC-CcCCcchhHHhcCCCCCEEEec--cc-ccCCCceEEEEEchhh
Confidence            998 4 5331    22334568999888  87 6655679999998876

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=98.63  E-value=1.7e-11  Score=117.37  Aligned_cols=166  Identities=11%  Similarity=0.038  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.+++++    |  ++++  +|+||+|+|+|+.+++.++ ..+|+.++ ....|+.  ....++..|.+++.+|.
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~--~~~~~~~~g~~~~~~~~  142 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKE--DIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPP--FARSVRLNNRKLVSNSL  142 (392)
Confidence            455667777655    5  4444  7999999999999999887 46788765 3333431  22334456888888887


Q ss_pred             CCCCC--ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH---HHHH-HHHhCCcEEEecccccCcCCc----cC
Q 035915          231 AWLDL--RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM---HWIS-EAHRNSWHVLLDATALVVGED----RL  298 (344)
Q Consensus       231 ~~~~g--~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl---~~Ia-~ar~~g~~vlvDAaQa~~G~~----~L  298 (344)
                      +..++  .++.++|++.++..    ++++|.++..+|  |.++|.   +.|. .|+++|+++++|.+++. ...    ..
T Consensus       143 ~~~~g~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~  217 (392)
T 3b1d_A          143 KEENGLFQIDFEQLENDIVEN----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD-LTLFGHEHV  217 (392)
Confidence            43222  36778888877621    356777765555  999884   4443 35889999999999986 321    12


Q ss_pred             CCCC-----CCCcEEEEccccCCCCCCC-ceEEEEEeCC-Ccc
Q 035915          299 NLAL-----HRPDFVLCNLDNTQNAQPS-KITCLLIRKK-SFD  334 (344)
Q Consensus       299 DLs~-----l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~-~~~  334 (344)
                      ++..     .+.++++.|++|+ ||.|. .+|+++++++ +.+
T Consensus       218 ~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~  259 (392)
T 3b1d_A          218 SFNTVSPDFKDFALVLSSATKT-FNIAGTKNSYAIIENPTLCA  259 (392)
Confidence            3321     3456899999999 87441 4798988654 544

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.04  E-value=1.4e-10  Score=112.20  Aligned_cols=150  Identities=9%  Similarity=-0.000  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHcCC-----CCCCCeEEEeCCHHHHHHHHHhhCCCCCCC----eEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          159 IQARNKVLKHCGL-----PDDEYLVLFTPNYRDAMMLVGESYPFFRGN----FYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       159 e~AR~~IA~~Lga-----~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd----~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      .+.|+.||++++.     ++++ +|++|+|+|+++++++.++ ..+||    .|+ ..-.|..  +...++..|++++.+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~  146 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDR-YIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAAPFYST--YVEETTYVRSGMYKW  146 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSS-EEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECSSCCTH--HHHHHHTTCBTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCC-eEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcCCCchh--HHHHHHHcCCeEEEe
Confidence            6788899998873     3322 7999999999999999887 45788    754 4455552  344456678888888


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCC-ccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGE-DRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~-~~LDLs~l~~  305 (344)
                      +.+.. + +.        .     .++++|.++.-+|  |.+++ +.+.+.+.+++++++|.+++. ++ .++.. ..+.
T Consensus       147 ~~d~~-~-l~--------~-----~~~k~v~l~~p~NPtG~~~~-~l~~~~~~~~~~ii~De~y~~-~~~~~l~~-~~~~  208 (391)
T 3bwn_A          147 EGDAW-G-FD--------K-----KGPYIELVTSPNNPDGTIRE-TVVNRPDDDEAKVIHDFAYYW-PHYTPITR-RQDH  208 (391)
T ss_dssp             EEEST-T-CC--------C-----CSCEEEEEESSCTTTCCCCC-CCC-----CCCEEEEECTTCS-TTTSCCCC-CBCC
T ss_pred             cCCHH-H-cC--------C-----CCCEEEEECCCCCCCchhHH-HHHHHhhcCCCEEEEeCCCCC-CCCCcccc-CCCC
Confidence            77642 1 11        1     1467887777677  99987 322222334499999999987 54 34443 3567


Q ss_pred             cEEEEccccCCCCCCCce--EEEEE-eCCC
Q 035915          306 DFVLCNLDNTQNAQPSKI--TCLLI-RKKS  332 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~Gi--G~L~V-r~~~  332 (344)
                      ++++.|++|+ || +.|+  |++++ ++++
T Consensus       209 ~i~~~S~SK~-~g-~~GlRiG~~~~~~~~l  236 (391)
T 3bwn_A          209 DIMLFTFSKI-TG-HAGSRIGWALVKDKEV  236 (391)
T ss_dssp             SEEEEEHHHH-HS-CGGGCEEEEEECCHHH
T ss_pred             eEEEEechhh-cC-CCccceEEEEecCHHH
Confidence            9999999999 88 4485  99998 5444

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.03  E-value=4.5e-10  Score=109.79  Aligned_cols=171  Identities=10%  Similarity=0.035  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C------CCCCeEEE-cCCcC--HHHHHHHHH----c
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F------FRGNFYMT-IIGEE--LDYVREFAS----F  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~------~~Gd~ivS-~~eH~--~~~ir~la~----~  220 (344)
                      ....++.+++++++++++++  .|+||+|+|+|+++++..+. +      .+|+.|+. .-.+|  ......+..    +
T Consensus        92 ~~~~~~l~~~la~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~  169 (449)
T 3a8u_X           92 HPLSFQLAEKITDLTPGNLN--HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNR  169 (449)
T ss_dssp             CHHHHHHHHHHHTTSSTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhc
Confidence            34567889999999987665  79999999999998877542 1      14677653 44444  221111110    0


Q ss_pred             CC-----cEEEEEeCCC--CCC--ccC--------HHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-
Q 035915          221 KE-----SKVILAPEAW--LDL--RIK--------GSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-  276 (344)
Q Consensus       221 ~G-----~kV~~vp~~~--~~g--~i~--------~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-  276 (344)
                      .+     ..+..++...  ...  .++        .++|++.++... ..++++|.+..++ + |.++|    ++.|.+ 
T Consensus       170 ~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~-~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l  248 (449)
T 3a8u_X          170 KLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD-ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI  248 (449)
T ss_dssp             TTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred             cccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC-CCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence            11     1244444321  100  134        788888886310 0136777776554 3 99999    987765 


Q ss_pred             HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCc---eEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSK---ITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~G---iG~L~Vr~~~~~  334 (344)
                      |+++|+++++|.+|+ + |...    ++.....+|++++|  |+ |+ + |   +|++++++++.+
T Consensus       249 ~~~~~~~li~Dev~~~~-g~~g~~~~~~~~~~~~di~s~s--K~-l~-~-G~~~~G~~~~~~~~~~  308 (449)
T 3a8u_X          249 CNQHNILLVFDEVITGF-GRTGSMFGADSFGVTPDLMCIA--KQ-VT-N-GAIPMGAVIASTEIYQ  308 (449)
T ss_dssp             HHHHTCEEEEECTTTTT-TTTSSSSHHHHHTCCCSEEEEC--GG-GG-T-TSSCCEEEEEEHHHHH
T ss_pred             HHHhCCEEEEeccccCc-cccCcchhhhhcCCCCCEEEEc--cc-cc-C-CCCceEEEEECHHHHH
Confidence            689999999999994 7 7431    22223468988665  98 77 4 6   999999876544

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.02  E-value=6.5e-09  Score=102.04  Aligned_cols=162  Identities=11%  Similarity=0.038  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------CCCC-CeEE-EcCCcC--HHHHHHHHH--
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------FFRG-NFYM-TIIGEE--LDYVREFAS--  219 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~~~G-d~iv-S~~eH~--~~~ir~la~--  219 (344)
                      ......+.++++++++|.  +  .|+||+|+|||+.+++....        +.+| +.++ ..-.+|  ...+..+..  
T Consensus       105 ~~~~~~~l~~~la~~~g~--~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~  180 (433)
T 1z7d_A          105 FSVPLGICERYLTNLLGY--D--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTK  180 (433)
T ss_dssp             EEHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------
T ss_pred             CCHHHHHHHHHHHhhcCC--C--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCc
Confidence            344567888999999984  3  69999999999998776531        2356 6755 333444  111111111  


Q ss_pred             --cCC-----cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-cccc----cHHHHHH-HHhCCcEEE
Q 035915          220 --FKE-----SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRY----SMHWISE-AHRNSWHVL  285 (344)
Q Consensus       220 --~~G-----~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~----Pl~~Ia~-ar~~g~~vl  285 (344)
                        +.+     ..+..+|.+      +.++|++.+..    .++++|.+..++ + |.+.    +++.|.+ |+++|++++
T Consensus       181 ~~~~~~~p~~~~v~~~~~~------d~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI  250 (433)
T 1z7d_A          181 KCTSNFGPFAPQFSKVPYD------DLEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFV  250 (433)
T ss_dssp             -----------CEEEECTT------CHHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred             cccccCCCCCCCeEEeCCC------CHHHHHHHhCC----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Confidence              011     344555542      67889888842    146777776554 3 8877    6777754 699999999


Q ss_pred             eccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCc---eEEEEEeCCCccc
Q 035915          286 LDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSK---ITCLLIRKKSFDT  335 (344)
Q Consensus       286 vDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~G---iG~L~Vr~~~~~~  335 (344)
                      +|.+|+ + |...    ++.....+|++++|  |+ +| + |   +|++++++++.+.
T Consensus       251 ~DEv~~g~-g~~g~~~~~~~~~~~~di~t~s--K~-l~-~-G~~~~G~v~~~~~~~~~  302 (433)
T 1z7d_A          251 ADEVQTGL-GRTGKLLCVHHYNVKPDVILLG--KA-LS-G-GHYPISAVLANDDIMLV  302 (433)
T ss_dssp             EECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GG-T-TSSCCEEEEECHHHHTT
T ss_pred             EecCccCC-CcCCcchhhHhcCCCCCEEEEC--cc-cc-C-CCCCeEEEEECHHHHhh
Confidence            999997 4 4321    12223569988655  99 87 4 5   9999998876543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.02  E-value=1.3e-09  Score=104.08  Aligned_cols=160  Identities=11%  Similarity=0.007  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCC------CC-CeE-EEcCCcC--HHHHHHHHHc----
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFF------RG-NFY-MTIIGEE--LDYVREFASF----  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~------~G-d~i-vS~~eH~--~~~ir~la~~----  220 (344)
                      ....++.++++++++|++    +|+||+|+|+|+++++..+...      +| +.+ +..-.+|  ......+...    
T Consensus        80 ~~~~~~l~~~la~~~~~~----~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~  155 (406)
T 4adb_A           80 NEPVLRLAKKLIDATFAD----RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS  155 (406)
T ss_dssp             CHHHHHHHHHHHHHSSCS----EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT
T ss_pred             CHHHHHHHHHHHhhCCCC----eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc
Confidence            345688999999999863    6999999999999988765210      34 664 4444444  2222222110    


Q ss_pred             -----CCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-ccccc-----cHHHHHH-HHhCCcEEEecc
Q 035915          221 -----KESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-NGTRY-----SMHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       221 -----~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-NG~i~-----Pl~~Ia~-ar~~g~~vlvDA  288 (344)
                           .+..+..+|.+      +.++|++.+++     ++++|.+..++ +|.++     +++.|.+ |+++|+++++|.
T Consensus       156 ~~~~~~~~~~~~~~~~------d~~~l~~~l~~-----~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De  224 (406)
T 4adb_A          156 QDFAPLPADIRHAAYN------DINSASALIDD-----STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDE  224 (406)
T ss_dssp             GGGCSCCSSEEEECTT------CHHHHHTTCST-----TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccCCCCCCCceEeCCC------cHHHHHHHhcC-----CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence                 01244444432      57788887764     47888887554 35444     4555544 689999999999


Q ss_pred             ccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          289 TAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       289 aQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      +|+ + |..    .++.....+|++++  +|+ |+ | -.+|+++++++..+
T Consensus       225 ~~~~~-~~~g~~~~~~~~~~~~d~~t~--sK~-~~-~G~r~G~~~~~~~~~~  271 (406)
T 4adb_A          225 VQTGV-GRTGELYAYMHYGVTPDLLTT--AKA-LG-GGFPVGALLATEECAR  271 (406)
T ss_dssp             TTTTT-TTTSSSSHHHHHTCCCSEEEE--CGG-GG-TTSCCEEEEECHHHHH
T ss_pred             cccCC-CccchhHHHHhcCCCCCEEEe--chh-hc-CCCCeEEEEEcHHHHh
Confidence            996 3 332    12222456898865  999 87 4 23999999876543

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.00  E-value=2e-09  Score=104.91  Aligned_cols=162  Identities=9%  Similarity=0.005  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC------CCCC-eEE-EcCCcC--HHHHHHHHH----
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF------FRGN-FYM-TIIGEE--LDYVREFAS----  219 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~------~~Gd-~iv-S~~eH~--~~~ir~la~----  219 (344)
                      .....++.++++++++|.  +  .|+||+|+|+|+++++..+..      .+|+ .++ ..-.+|  ...+..+..    
T Consensus        97 ~~~~~~~l~~~la~~~g~--~--~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~  172 (420)
T 2pb2_A           97 TNEPALRLGRKLIDATFA--E--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKY  172 (420)
T ss_dssp             CCHHHHHHHHHHHHHSSC--S--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHH
T ss_pred             CCHHHHHHHHHHHhhCCC--C--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccc
Confidence            345668899999999984  3  699999999999988876521      0453 554 444444  222211110    


Q ss_pred             cCCc-----EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccc-c---cHHHHHH-HHhCCcEEEec
Q 035915          220 FKES-----KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTR-Y---SMHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       220 ~~G~-----kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i-~---Pl~~Ia~-ar~~g~~vlvD  287 (344)
                      +.+.     .+..+|.+      +.++|++.+++     ++++|.+...+|  |.+ +   +++.|.+ |+++|+++++|
T Consensus       173 ~~~~~p~~~~~~~~~~~------d~~~le~~i~~-----~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~D  241 (420)
T 2pb2_A          173 SDGFGPKPADIIHVPFN------DLHAVKAVMDD-----HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFD  241 (420)
T ss_dssp             HTTSSSCCSCEEEECTT------CHHHHHHHCCT-----TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCCCCCeEEecCC------CHHHHHHHhcc-----CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEE
Confidence            1111     25555542      57888888864     477888776665  642 3   4555544 68999999999


Q ss_pred             cccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          288 ATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       288 AaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .+|. + |...    ++.....+|++++  .|+ +|+...+|++++++++.+
T Consensus       242 ev~~g~-~~~g~~~~~~~~~~~~diit~--sK~-l~~G~~iG~~~~~~~l~~  289 (420)
T 2pb2_A          242 EVQCGM-GRTGDLFAYMHYGVTPDILTS--AKA-LGGGFPVSAMLTTQEIAS  289 (420)
T ss_dssp             CTTTTT-TTTSSSSHHHHHTCCCSEEEE--CGG-GGTTSCCEEEEECHHHHT
T ss_pred             cCCcCc-ccCCcHHHHHhcCCCCCeEEe--ccc-ccCCCceEEEEEhHHHHH
Confidence            9996 3 3221    1222356898865  699 774345999999876544

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.00  E-value=1.5e-09  Score=109.38  Aligned_cols=179  Identities=8%  Similarity=-0.040  Sum_probs=116.3

Q ss_pred             CCCChhhh-hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC--C-CCCCCeEE-EcCCcCHHHHHHHHHc
Q 035915          146 KSSFPGSF-ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY--P-FFRGNFYM-TIIGEELDYVREFASF  220 (344)
Q Consensus       146 nss~~g~~-as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl--~-~~~Gd~iv-S~~eH~~~~ir~la~~  220 (344)
                      |+...++- +....++.-..+.+++|.+. ....+||+|+|.+.+..+-+.  + ..+++.++ ....|.+  +..-+.-
T Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~lGlp~-~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkS--v~kAl~l  163 (450)
T 3bc8_A           87 QPKAAGSSLLNKITNSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS--CFKSMVT  163 (450)
T ss_dssp             CCSBHHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH--HHHHHHH
T ss_pred             CccccCCcHHHHHHHHHHHHHHHhCCCCC-CceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHH--HHHHHHH
Confidence            54334433 33455788888899999864 447899999997655433221  1 11256654 4444442  2222233


Q ss_pred             CCcEEEEEeCC--CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcccc--ccccHHHHHH-HHhCCcEEEecccccCcCC
Q 035915          221 KESKVILAPEA--WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADING--TRYSMHWISE-AHRNSWHVLLDATALVVGE  295 (344)
Q Consensus       221 ~G~kV~~vp~~--~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG--~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~  295 (344)
                      .|++.++++..  ...+.++.+.|++++.... ...+.+|..+...+|  ..-||+.|++ ||++|+++|||+|+.+ -.
T Consensus       164 ~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~-~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~-~~  241 (450)
T 3bc8_A          164 AGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGL-QS  241 (450)
T ss_dssp             TTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTT-TC
T ss_pred             cCCeeEEEEeeecCccCCcCHHHHHHHHHhcC-CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCch-hh
Confidence            58887776541  2257899999999997531 012344444433344  8899988865 6999999999999986 33


Q ss_pred             ccCC-C--CC---CCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          296 DRLN-L--AL---HRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       296 ~~LD-L--s~---l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ..+. +  +.   -++|++++|.||| ++.|.|.++|++|+
T Consensus       242 ~~~~~l~~~a~~~~~AD~~v~S~HK~-l~a~~~~~~l~~rd  281 (450)
T 3bc8_A          242 SKCMHLIQQGARVGRIDAFVQSLDKN-FMVPVGGAIIAGFN  281 (450)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEEHHHH-HSCCSSCEEEEESC
T ss_pred             hhhHhHHHHHhcccCCCEEEECCccC-CCchhccEEEEecC
Confidence            2211 1  11   2799999999999 77799999999974

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=98.99  E-value=8e-10  Score=109.04  Aligned_cols=169  Identities=13%  Similarity=0.032  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHHHHHcC-CCCCCCeEEEeCCHHHHHHHHHhhCC-C------------CCCCeEEE-cCCcC--HHHHHH
Q 035915          154 ISIPEIQARNKVLKHCG-LPDDEYLVLFTPNYRDAMMLVGESYP-F------------FRGNFYMT-IIGEE--LDYVRE  216 (344)
Q Consensus       154 as~~le~AR~~IA~~Lg-a~p~ey~VVFTsnaTeAlnlva~sl~-~------------~~Gd~ivS-~~eH~--~~~ir~  216 (344)
                      ......+.+++++++++ ..++  .|+||+|+|||++.++.... +            .+|++|++ .-.+|  ...+..
T Consensus        99 ~~~~~~~la~~la~~~~~~~~~--~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~  176 (449)
T 2cjg_A           99 YSVAMARFVETFARVLGDPALP--HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS  176 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred             CCHHHHHHHHHHHHhcCCCCCC--EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence            44456778888999997 4444  79999999999998775321 1            12777653 33444  111111


Q ss_pred             H-----HHcCCc-----EEEEEeCCC--CCC-------ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----H
Q 035915          217 F-----ASFKES-----KVILAPEAW--LDL-------RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----M  271 (344)
Q Consensus       217 l-----a~~~G~-----kV~~vp~~~--~~g-------~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l  271 (344)
                      +     ..+.+.     .+..+|.+.  .+.       .++.++|++.++..  ..++++|.+..++|  |.+.|    +
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l  254 (449)
T 2cjg_A          177 LTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR--PHDIACFVAEPIQGEGGDRHFRPEFF  254 (449)
T ss_dssp             TCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS--TTTEEEEEECSEETTTTCEECCHHHH
T ss_pred             hcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc--CCceEEEEEeCcCCCCCCccCCHHHH
Confidence            0     011232     566666643  111       23455688888531  12578888876654  98777    7


Q ss_pred             HHHHH-HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          272 HWISE-AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       272 ~~Ia~-ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +.|.+ |+++|+++++|.+|+ + |...    ++.....+|++++|  |+ |  |  +|++++++++.+
T Consensus       255 ~~l~~l~~~~g~lli~DEv~~g~-g~~g~~~~~~~~~~~~di~t~s--K~-l--~--iG~~~~~~~~~~  315 (449)
T 2cjg_A          255 AAMRELCDEFDALLIFDEVQTGC-GLTGTAWAYQQLDVAPDIVAFG--KK-T--Q--VCGVMAGRRVDE  315 (449)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTT-TTTSSSSTHHHHTCCCSEEEEC--GG-G--S--SEEEEECGGGGG
T ss_pred             HHHHHHHHHCCcEEEEeccccCC-CccCcceeecccCCCceEEEec--Cc-c--c--EEEEEECHHHhh
Confidence            66654 689999999999999 5 5432    12223578999887  98 6  5  899999987765

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=98.92  E-value=1.2e-08  Score=100.40  Aligned_cols=162  Identities=11%  Similarity=-0.008  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------CCCC-CeEE-EcCCcC--HHHHHHHHH----
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------FFRG-NFYM-TIIGEE--LDYVREFAS----  219 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~~~G-d~iv-S~~eH~--~~~ir~la~----  219 (344)
                      ...++.++++++++|.  +  .|+||+|+|+|+.+++..+.        ..+| +.++ ..-.+|  ......+..    
T Consensus       118 ~~~~~l~~~la~~~g~--~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~  193 (439)
T 2oat_A          118 NVLGEYEEYITKLFNY--H--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS  193 (439)
T ss_dssp             SSHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHhcCC--C--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhc
Confidence            3557788899999984  3  69999999999998876532        1245 6654 443444  221111100    


Q ss_pred             cCC-----cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-cccc----cHHHHHH-HHhCCcEEEec
Q 035915          220 FKE-----SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRY----SMHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       220 ~~G-----~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~----Pl~~Ia~-ar~~g~~vlvD  287 (344)
                      +.+     ..+..+|.+      +.++|++.++.    .++++|.+..++ + |.+.    +++.|.+ |+++|+++++|
T Consensus       194 ~~~~~p~~~~v~~~~~~------d~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  263 (439)
T 2oat_A          194 YDGFGPFMPGFDIIPYN------DLPALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD  263 (439)
T ss_dssp             HTTSCSCCTTEEEECSS------CHHHHHHHTTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCCCCCeEEeCCC------CHHHHHHHhCC----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            011     456666642      57889888852    146777776554 3 8877    6877754 69999999999


Q ss_pred             cccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          288 ATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                      .+|. + |...    ++.....+|++++  .|+ +|+. -.+|++++++++.+.
T Consensus       264 Ev~~g~-g~~g~~~~~~~~~~~~Di~t~--sK~-l~~G~~~~G~v~~~~~~~~~  313 (439)
T 2oat_A          264 EIQTGL-ARTGRWLAVDYENVRPDIVLL--GKA-LSGGLYPVSAVLCDDDIMLT  313 (439)
T ss_dssp             CTTTTT-TTTSSSSGGGGGTCCCSEEEE--CGG-GGTTSSCCEEEEECHHHHTT
T ss_pred             ccccCC-ccCCcchhHHHhCCCCcEEEe--ccc-ccCCCCCeEEEEECHHHHhc
Confidence            9995 3 4221    2333356898855  599 7732 239999998765543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=98.91  E-value=7.9e-09  Score=100.13  Aligned_cols=172  Identities=9%  Similarity=-0.014  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcC--HHHHHHHHH---c-----CCc
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEE--LDYVREFAS---F-----KES  223 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~--~~~ir~la~---~-----~G~  223 (344)
                      ....+.+++++++++++++  .|+||+|+|+|+++++.... +..++.++ ..-.+|  ......+..   .     ...
T Consensus        85 ~~~~~l~~~la~~~~~~~~--~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (433)
T 1zod_A           85 RPVVDLATRLANITPPGLD--RALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV  162 (433)
T ss_dssp             HHHHHHHHHHHHHSCTTCC--EEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred             HHHHHHHHHHHHhCCCCcC--EEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence            4456777889999998765  79999999999998876431 22345654 333333  221111100   0     011


Q ss_pred             EEEEEeCCC--C---C------CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEE
Q 035915          224 KVILAPEAW--L---D------LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVL  285 (344)
Q Consensus       224 kV~~vp~~~--~---~------g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vl  285 (344)
                      .+..++...  .   +      +.++.++|++.+++. ...++++|.+..++|  |.++|    ++.|.+ |+++|++++
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li  241 (433)
T 1zod_A          163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ-SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI  241 (433)
T ss_dssp             TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH-CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEE
T ss_pred             CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEE
Confidence            334444321  0   0      124578888888641 112467777765543  98887    877754 689999999


Q ss_pred             eccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          286 LDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       286 vDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|.+|+ + |...    ++.....+|++++|  |. ||+..++|++++++++.+
T Consensus       242 ~DEv~~~~-g~~g~~~~~~~~~~~~di~s~s--K~-~~~G~~ig~~~~~~~~~~  291 (433)
T 1zod_A          242 LDEAQTGV-GRTGTMFACQRDGVTPDILTLS--KT-LGAGLPLAAIVTSAAIEE  291 (433)
T ss_dssp             EECTTTTT-TTTSSSSTHHHHTCCCSEEEEC--HH-HHTTSSCEEEEECHHHHH
T ss_pred             EeccccCC-CcCchHhHHhhcCCCCCEEEec--cc-ccCCCCeeEEEEhHHHHH
Confidence            999999 6 6432    12224568998877  98 775456999999876543

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=98.90  E-value=1.1e-08  Score=104.39  Aligned_cols=146  Identities=11%  Similarity=0.020  Sum_probs=100.7

Q ss_pred             eEEEeCCHHHHHHHHHhhC----CCCCCCeEE-EcCCcCHHHHHHHH--HcCCcEEEEEeCCCCC-CccCHHHHHHHhhh
Q 035915          177 LVLFTPNYRDAMMLVGESY----PFFRGNFYM-TIIGEELDYVREFA--SFKESKVILAPEAWLD-LRIKGSQLSQYFRR  248 (344)
Q Consensus       177 ~VVFTsnaTeAlnlva~sl----~~~~Gd~iv-S~~eH~~~~ir~la--~~~G~kV~~vp~~~~~-g~i~~~~L~~~l~~  248 (344)
                      +|++|+|+|+++.+++.++    -..+||.|+ ..-.|+.  ....+  ...|++++.+|.+..+ ..++.++|++.+++
T Consensus       167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  244 (546)
T 2zy4_A          167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTP--YIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP  244 (546)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHH--HHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST
T ss_pred             eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCcc--HHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC
Confidence            7999999999999998773    246799864 4444442  12221  2347888889876432 24788888877643


Q ss_pred             cCCCCCeeEEEEeCccc--cccccHHHHH----HH--HhCCcEEEecccccCcCCccCCCCC--CCCcEEEEccccCCCC
Q 035915          249 KCKHTPKGLFSYPADIN--GTRYSMHWIS----EA--HRNSWHVLLDATALVVGEDRLNLAL--HRPDFVLCNLDNTQNA  318 (344)
Q Consensus       249 ~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~a--r~~g~~vlvDAaQa~~G~~~LDLs~--l~~DFvv~S~HK~l~G  318 (344)
                           ++++|.+..-+|  |.++|.+.+.    .|  +++|+++++|.+++-.......+..  .+.++++.|+.|+ ||
T Consensus       245 -----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~-~g  318 (546)
T 2zy4_A          245 -----AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKY-FG  318 (546)
T ss_dssp             -----TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTT-TT
T ss_pred             -----CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccc-cC
Confidence                 477777775556  9999985443    34  5789999999999851211222211  1457999999999 88


Q ss_pred             CCCc--eEEEEEeCC
Q 035915          319 QPSK--ITCLLIRKK  331 (344)
Q Consensus       319 ~P~G--iG~L~Vr~~  331 (344)
                      .| |  +|++++.++
T Consensus       319 ~~-GlRiG~~~~~~~  332 (546)
T 2zy4_A          319 AT-GWRLGVVAAHQQ  332 (546)
T ss_dssp             CG-GGCEEEEEEESS
T ss_pred             CC-CcceEEEEECCH
Confidence            55 7  799999875

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=98.88  E-value=1.8e-08  Score=101.23  Aligned_cols=165  Identities=13%  Similarity=-0.003  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHc-----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC----eEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          159 IQARNKVLKHC-----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN----FYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       159 e~AR~~IA~~L-----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd----~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      .+.|+.|++++     |.+.+..+|+||+|+|+|+++++..+. .+||    .|+ ....|+.  +...++..|++++.+
T Consensus       132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~~~d~Vlv~~p~y~~--~~~~~~~~g~~~v~~  208 (498)
T 3ihj_A          132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-SGGGKSRTGVMIPIPQYPL--YSAVISELDAIQVNY  208 (498)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-CCCGGGSEEEEEEESCCTH--HHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-CCCCCCCCEEEEeCCCchh--HHHHHHHcCCEEEEe
Confidence            45677777766     443222279999999999999998874 4553    654 5555652  233344569999998


Q ss_pred             eCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc-----
Q 035915          229 PEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED-----  296 (344)
Q Consensus       229 p~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~-----  296 (344)
                      +.+.. +..++.++|++.+++.....+++++.+...+|  |.++|.+.+.    .|+++++++++|.++.- ...     
T Consensus       209 ~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~-~~~~~~~~  287 (498)
T 3ihj_A          209 YLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQD-NVYSPDCR  287 (498)
T ss_dssp             ECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCCTTCC
T ss_pred             eccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccc-cccCCCCC
Confidence            88643 12578999999987531111367777775566  9999986443    35789999999999876 322     


Q ss_pred             cCCCCCC----------CCc-EEEEccccCCC-CCCC-ceEEEEE
Q 035915          297 RLNLALH----------RPD-FVLCNLDNTQN-AQPS-KITCLLI  328 (344)
Q Consensus       297 ~LDLs~l----------~~D-Fvv~S~HK~l~-G~P~-GiG~L~V  328 (344)
                      ..++..+          .+. +++.|++|. | |.|- .+|.+++
T Consensus       288 ~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~G~~G~R~G~~~~  331 (498)
T 3ihj_A          288 FHSFKKVLYEMGPEYSSNVELASFHSTSKG-YMGECGYRGGYMEV  331 (498)
T ss_dssp             CCCHHHHHHHTCHHHHTTCCEEEEEESSSS-TTCCSSSCCEEEEE
T ss_pred             cCCHHHHHHHhcccccCceeEEEEeccccc-cccCcccceEEEEE
Confidence            1122111          122 567799999 7 5331 3677764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=98.86  E-value=1.3e-08  Score=98.89  Aligned_cols=176  Identities=9%  Similarity=-0.022  Sum_probs=106.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCe-EEEcCCcC--HHHHHHHHHcCC--c---
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNF-YMTIIGEE--LDYVREFASFKE--S---  223 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~-ivS~~eH~--~~~ir~la~~~G--~---  223 (344)
                      ......++.+++++++++...++ +|+||+|+|+|+.+++.... +..++. ++..-.+|  ......+.....  .   
T Consensus        83 ~~~~~~~~l~~~la~~~~~~~~~-~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  161 (439)
T 3dxv_A           83 ASNAPAVTLAERLLASFPGEGTH-KIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAK  161 (439)
T ss_dssp             SEEHHHHHHHHHHHHTTTCTTTE-EEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-----------
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCC-EEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccc
Confidence            34456788999999999765422 79999999999998877521 123444 44443343  111111100000  0   


Q ss_pred             ------EEEEEeCCCCCCcc-----CHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEE
Q 035915          224 ------KVILAPEAWLDLRI-----KGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVL  285 (344)
Q Consensus       224 ------kV~~vp~~~~~g~i-----~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vl  285 (344)
                            .+..+|.+.. ...     +.++|++.++.. ...++++|.+...+ | |.+.|    ++.|.+ |+++|++++
T Consensus       162 ~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li  239 (439)
T 3dxv_A          162 ADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAV-PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV  239 (439)
T ss_dssp             --CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTS-CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred             cCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhc-CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence                  1122343321 111     578888888411 11246677776555 4 99999    877765 699999999


Q ss_pred             eccccc-CcCC----ccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          286 LDATAL-VVGE----DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       286 vDAaQa-~~G~----~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|-+|+ + |.    ..++.....+|++++|  |. ||+--.+|+++.++++.+.
T Consensus       240 ~DE~~~g~-g~~g~~~~~~~~~~~~di~s~s--K~-~~~G~riG~~~~~~~~~~~  290 (439)
T 3dxv_A          240 CDEVKVGL-ARSGRLHCFEHEGFVPDILVLG--KG-LGGGLPLSAVIAPAEILDC  290 (439)
T ss_dssp             EECTTTCT-TTTSSSSGGGGTTCCCSEEEEC--GG-GGTTSCCEEEEEEHHHHTS
T ss_pred             EeccccCC-CcCchhhHHHhcCCCCCEEEEc--ch-hcCCcceEEEEECHHHHhh
Confidence            999996 3 32    2234444568988665  98 7732247999998766543

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.83  E-value=3.3e-09  Score=104.43  Aligned_cols=150  Identities=9%  Similarity=0.024  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCC-------CCCCCeEE-EcCCcCHHHHHHHHHcCCc
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYP-------FFRGNFYM-TIIGEELDYVREFASFKES  223 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~-------~~~Gd~iv-S~~eH~~~~ir~la~~~G~  223 (344)
                      ..+.|+.||++++      ++++  +|++|+|+|+++++++.++.       +.+||.|+ ..-.|.  .....++..|+
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~--~~~~~~~~~g~  177 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP--VFREQTKYFDK  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH--HHHHHHHHSCB
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcc--cHHHHHHHcCC
Confidence            4678888999886      5555  79999999999999999883       67898865 344443  23344455677


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCcc-CCC
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDR-LNL  300 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~-LDL  300 (344)
                      +++...       ++.+.|++.+++     +++++.++.-+|  |.+++ +.+   +  ++..+.|.+..- +..+ +++
T Consensus       178 ~~~~~~-------~d~~~l~~~~~~-----~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~-~~~s~~~~  238 (427)
T 2hox_A          178 KGYVWA-------GNAANYVNVSNP-----EQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYW-PHYTPIKY  238 (427)
T ss_dssp             TTEEEE-------EEGGGGTTCSCG-----GGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCS-TTTSCCCS
T ss_pred             eeeeec-------CCHHHHHHhhcC-----CceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccC-CCCCcccc
Confidence            765322       344556665544     367887776666  99999 533   3  456778876653 2222 233


Q ss_pred             CCCCCcEEEEccccCCCCCCCc--eEEEEEe-CCCc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSK--ITCLLIR-KKSF  333 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr-~~~~  333 (344)
                      . .+.|++++|++|. ||.| |  +|+++++ +++.
T Consensus       239 ~-~~~~i~~~S~SK~-~g~~-G~RiG~~~~~~~~l~  271 (427)
T 2hox_A          239 K-ADEDILLFTMSKF-TGHS-GSRFGWALIKDESVY  271 (427)
T ss_dssp             C-BCCSEEEEEHHHH-TSCG-GGCCEEEEECCHHHH
T ss_pred             C-CCceEEEEeChhc-CCCC-CceEEEEEECCHHHH
Confidence            2 5689999999999 8845 7  8999995 4443

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.81  E-value=1.6e-07  Score=90.23  Aligned_cols=165  Identities=10%  Similarity=-0.026  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHc-CCC-----CCCCeEEE--eCCHHHHHHHHHhhC--CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEE
Q 035915          158 EIQARNKVLKHC-GLP-----DDEYLVLF--TPNYRDAMMLVGESY--PFFRGNFYM-TIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       158 le~AR~~IA~~L-ga~-----p~ey~VVF--TsnaTeAlnlva~sl--~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~  226 (344)
                      ..+.|+.+++++ |..     ++  +|.|  |.++|+|++++...+  -..+||.|+ ..-.|..  ....++..|++++
T Consensus        81 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~  156 (409)
T 4eu1_A           81 IASFVEEAQKLCFGPTCAALRDG--RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPN--HESIFAKAGMELT  156 (409)
T ss_dssp             CHHHHHHHHHHHHCSSCHHHHTT--CEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTH--HHHHHHHTTCEEE
T ss_pred             cHHHHHHHHHHHcCCCchhhccC--ceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHh--HHHHHHHcCCeEE
Confidence            356888899876 665     44  5755  999999998764322  135788865 3444442  2334455799999


Q ss_pred             EEeCC-CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH---HH-HHHhCCcEEEecccccCcCCcc--
Q 035915          227 LAPEA-WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW---IS-EAHRNSWHVLLDATALVVGEDR--  297 (344)
Q Consensus       227 ~vp~~-~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~---Ia-~ar~~g~~vlvDAaQa~~G~~~--  297 (344)
                      .+|.+ ..+..++.++|++.++...  .++.++.++..+|  |.++|.+.   |. .|+++|+++++|.++.-.+..+  
T Consensus       157 ~~~~~~~~~~~~d~~~l~~~l~~~~--~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~  234 (409)
T 4eu1_A          157 PYSYYDPATKGLNLAGMLECLDKAP--EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLD  234 (409)
T ss_dssp             EECCEETTTTEECHHHHHHHHHHSC--TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHH
T ss_pred             EEEeecCcCCcCcHHHHHHHHHhCC--CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcc
Confidence            99873 2245789999999986411  1356777665566  99999865   43 3588999999999966313221  


Q ss_pred             -----C-CC-CCCCCcEEEEccccCCCCCCCc--eEEE--EEeC
Q 035915          298 -----L-NL-ALHRPDFVLCNLDNTQNAQPSK--ITCL--LIRK  330 (344)
Q Consensus       298 -----L-DL-s~l~~DFvv~S~HK~l~G~P~G--iG~L--~Vr~  330 (344)
                           + .+ ....-.+++.|+.|. ||.| |  +|++  ++.+
T Consensus       235 ~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~-G~riG~~~~v~~~  276 (409)
T 4eu1_A          235 YDAFVPRHLVDMVPNLIVAQSFSKN-FGLY-GHRCGALHISTAS  276 (409)
T ss_dssp             HHTHHHHHHHTTSSCCEEEEECTTT-SSCG-GGCCEEEEEECSS
T ss_pred             cchHHHHHHHhhCCcEEEEecCccc-ccCc-cCCceEEEEEeCC
Confidence                 0 11 112234677899999 8855 6  6876  5543

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.78  E-value=1.3e-08  Score=98.88  Aligned_cols=165  Identities=15%  Similarity=0.038  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-cCCcC--HHHHHHHHH----------cC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYMT-IIGEE--LDYVREFAS----------FK  221 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~ivS-~~eH~--~~~ir~la~----------~~  221 (344)
                      ....+.+++++++++ .++  .|+||+|+|||+++++.... ...++.++. .-.+|  .........          ..
T Consensus        95 ~~~~~l~~~la~~~~-~~~--~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~  171 (434)
T 3l44_A           95 ALEVKFAKMLKEAMP-ALD--KVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA  171 (434)
T ss_dssp             HHHHHHHHHHHHHCT-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred             HHHHHHHHHHHHhCC-CCC--EEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence            345667778999987 444  79999999999998776431 124566553 33333  111000000          00


Q ss_pred             C------cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-HHhCCcEEEecc
Q 035915          222 E------SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       222 G------~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-ar~~g~~vlvDA  288 (344)
                      +      ..+..+|.+      +.++|+++++...  .++.+|.+...+|  |.+.|    ++.|.+ |+++|+++++|.
T Consensus       172 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DE  243 (434)
T 3l44_A          172 GVPQSIAQEVITVPFN------NVETLKEALDKWG--HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE  243 (434)
T ss_dssp             TCCHHHHTTEEEECTT------CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEEC
T ss_pred             CCCCcCCCceEecCcc------cHHHHHHHHHhCC--CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            0      022333321      5778888886310  1366777765553  88998    877765 699999999999


Q ss_pred             ccc---CcCCcc-CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          289 TAL---VVGEDR-LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       289 aQa---~~G~~~-LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|.   . |... ++.....+|++++|  |. ||++-.+|+++.++++.+.
T Consensus       244 v~~g~~~-g~~~~~~~~~~~~di~t~s--K~-~~~G~~iG~~~~~~~i~~~  290 (434)
T 3l44_A          244 VITAFRF-MYGGAQDLLGVTPDLTALG--KV-IGGGLPIGAYGGKKEIMEQ  290 (434)
T ss_dssp             TTTTTTS-SSSCHHHHHTCCCSEEEEE--GG-GGTTSSCEEEEECHHHHTT
T ss_pred             cccceec-cccHHHHHcCCCCCeeehh--hh-hcCCcCeeeEEEcHHHHHh
Confidence            997   2 3211 22223568988877  88 7766679999888766543

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=98.74  E-value=6.4e-08  Score=94.74  Aligned_cols=166  Identities=11%  Similarity=-0.009  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---CCCCCCCeE-EEcCCcC--HHHHHHHH-------Hc
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---YPFFRGNFY-MTIIGEE--LDYVREFA-------SF  220 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l~~~~Gd~i-vS~~eH~--~~~ir~la-------~~  220 (344)
                      .....++..+.+++.++ .++  .|+||+|+|+|+.+++..   +.  .++.+ +..-.+|  ...+....       ..
T Consensus        95 ~~~~~~~la~~l~~~~~-~~~--~v~~~~gg~eA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  169 (453)
T 2cy8_A           95 SHPLEVRWAERIVAAFP-SIR--KLRFTGSGTETTLLALRVARAFT--GRRMILRFEGHYHGWHDFSASGYNSHFDGQPA  169 (453)
T ss_dssp             SCHHHHHHHHHHHHHCT-TCS--EEEEESCHHHHHHHHHHHHHHHH--CCCEEEEECC----------------------
T ss_pred             CCHHHHHHHHHHHhhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCcCCCchhhHhhcCCccCCCcC
Confidence            33455667777777776 444  799999999999988776   42  33454 4443344  11111100       00


Q ss_pred             CCc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEec
Q 035915          221 KES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       221 ~G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvD  287 (344)
                      .|+      .+..+|.      .+.++|++.+++..  .++++|.+..++ + |.+.|    ++.|.+ |+++|+++++|
T Consensus       170 ~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~--~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D  241 (453)
T 2cy8_A          170 PGVLPETTANTLLIRP------DDIEGMREVFANHG--SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD  241 (453)
T ss_dssp             ------CGGGEEEECT------TCHHHHHHHHHHHG--GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCccccCceeecCC------CCHHHHHHHHHhcC--CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            133      2333432      26788888886310  136777775544 3 99888    877754 69999999999


Q ss_pred             ccccCcCCcc---CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          288 ATALVVGEDR---LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa~~G~~~---LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .+|+-.....   ++.....+|++++|  |+ +++...+|++++++++.+.
T Consensus       242 Ev~~g~~~g~~~~~~~~~~~~di~s~s--K~-l~~G~~~G~v~~~~~~~~~  289 (453)
T 2cy8_A          242 EVISGFRVGNHGMQALLDVQPDLTCLA--KA-SAGGLPGGILGGREDVMGV  289 (453)
T ss_dssp             CTTTTTTTCTTHHHHHHTCCCSEEEEE--GG-GGTTSSCEEEEECHHHHTT
T ss_pred             cCccccccCchhhhHHhCCCCcEEEEC--hh-hhCCcceEEEechHHHHHH
Confidence            9997211111   11123468987655  99 7754469999998765543

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=98.70  E-value=5.5e-08  Score=94.16  Aligned_cols=165  Identities=12%  Similarity=0.009  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCCCCeEE-EcCCcC--HH--------HHHHHH-
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFRGNFYM-TIIGEE--LD--------YVREFA-  218 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~Gd~iv-S~~eH~--~~--------~ir~la-  218 (344)
                      ......+.+++++++++ +++  .|+||+|+|||+.+++.   .++  .++.++ ..-.+|  ..        ....+. 
T Consensus        90 ~~~~~~~la~~l~~~~~-~~~--~v~~~~ggsea~~~al~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  164 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVP-SIE--MVRFVNSGTEACMAVLRIMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGL  164 (427)
T ss_dssp             CCHHHHHHHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCCHHHHHhcCCcccccCC
Confidence            33455778888999987 444  79999999999998773   332  234544 232333  11        011000 


Q ss_pred             -HcCCc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEE
Q 035915          219 -SFKES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHV  284 (344)
Q Consensus       219 -~~~G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~v  284 (344)
                       ...|+      .+..+|.+      +.++|++.+++..  .++++|.+...+ + |.+.|    ++.|.+ |+++|+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~l  236 (427)
T 3fq8_A          165 PSSPGVPKKTTANTLTTPYN------DLEAVKALFAENP--GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALL  236 (427)
T ss_dssp             CSCSSSCHHHHTTEEEEETT------CHHHHHHHHHHST--TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCCcccCceeecCCC------CHHHHHHHHHhCC--CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence             00111      23344432      5788988887521  246777776555 4 99999    877765 69999999


Q ss_pred             Eeccccc---CcCC-ccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          285 LLDATAL---VVGE-DRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       285 lvDAaQa---~~G~-~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|.+|+   . |. ...+.....+|++++|  |. |++--.+|+++.++++.+.
T Consensus       237 i~DEv~~g~~~-g~~~~~~~~~~~~di~t~s--K~-~~~G~~~G~~~~~~~~~~~  287 (427)
T 3fq8_A          237 VFDEVITGFRI-AYGGVQEKFGVTPDLTTLG--KI-IGGGLPVGAYGGKREIMQL  287 (427)
T ss_dssp             EEECTTTBTTT-BTTHHHHHTTCCCSEEEEC--GG-GGTTSSCEEEEECHHHHTT
T ss_pred             EEecccccccc-CcchhhHhcCCCCChhhhh--hh-hhCCcceEEEEEcHHHHHh
Confidence            9999998   2 32 1122334568999888  98 7721239999988765543

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=98.70  E-value=1.1e-07  Score=92.23  Aligned_cols=165  Identities=10%  Similarity=-0.026  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcC--HHHHHHHHH----------cC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEE--LDYVREFAS----------FK  221 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~--~~~ir~la~----------~~  221 (344)
                      ....+.+++++++++ .++  .|+||+|+|||+++++.... +..++.++ ..-.+|  .........          ..
T Consensus        93 ~~~~~la~~l~~~~~-~~~--~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  169 (429)
T 4e77_A           93 EMEVKMAQLVTDLVP-TMD--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP  169 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred             HHHHHHHHHHHhhCC-CCC--EEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence            455677888999987 444  79999999999998776321 12344544 333344  111100000          00


Q ss_pred             Cc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEecc
Q 035915          222 ES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       222 G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvDA  288 (344)
                      |+      .+..+|.+      +.++|+++++..  ..++.+|.+..++ + |.+.|    ++.|.+ |+++|+++++|.
T Consensus       170 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~--~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE  241 (429)
T 4e77_A          170 GVPTDFAKHTLTCTYN------DLASVRQAFEQY--PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE  241 (429)
T ss_dssp             TSCGGGGTTEEEECTT------CHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCccCCceeecCCC------CHHHHHHHHHhc--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence            11      12222221      678888888742  1246777776555 4 88998    877765 699999999999


Q ss_pred             ccc---CcCCcc-CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          289 TAL---VVGEDR-LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       289 aQa---~~G~~~-LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|+   . |... ++.-...+|++++|  |. ||+.-.+|+++.++++.+.
T Consensus       242 v~~g~r~-g~~~~~~~~~~~pdi~t~s--K~-~~~G~~~G~~~~~~~~~~~  288 (429)
T 4e77_A          242 VMTGFRV-ALAGAQDYYHVIPDLTCLG--KI-IGGGMPVGAFGGRREVMNA  288 (429)
T ss_dssp             TTTBTTT-BTTCHHHHTTCCCSEEEEE--GG-GGTTSCCEEEEECHHHHTT
T ss_pred             cccCccc-CcchHHHhcCCCCCeeeec--cc-ccCCCCeEEEEECHHHHHH
Confidence            998   4 4321 22223568988776  98 7754468999988765543

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=98.66  E-value=3.1e-07  Score=89.81  Aligned_cols=175  Identities=10%  Similarity=0.048  Sum_probs=106.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C---C---CCCeEEE-cCCcC--HHHHHHHHH---
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F---F---RGNFYMT-IIGEE--LDYVREFAS---  219 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~---~---~Gd~ivS-~~eH~--~~~ir~la~---  219 (344)
                      ......++.+++++++++.+.   +|+||+|+|||++.++.... +   .   +++.++. .-.+|  ......+..   
T Consensus        88 ~~~~~~~~la~~l~~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  164 (452)
T 3n5m_A           88 QSHEPAIKLAEKLNEWLGGEY---VIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQ  164 (452)
T ss_dssp             SEEHHHHHHHHHHHHHHTSCE---EEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGG
T ss_pred             cCCHHHHHHHHHHHHhCCCCc---eEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchh
Confidence            344566788889999998753   39999999999998776542 0   2   4566553 33333  111111100   


Q ss_pred             -c-----CCcEEEEEeCCCC-C----------CccCHHHHHHHhhhcCCCCCeeEEEEeCc-cc-ccccc----HHHHHH
Q 035915          220 -F-----KESKVILAPEAWL-D----------LRIKGSQLSQYFRRKCKHTPKGLFSYPAD-IN-GTRYS----MHWISE  276 (344)
Q Consensus       220 -~-----~G~kV~~vp~~~~-~----------g~i~~~~L~~~l~~~~~~~~t~LVa~~av-SN-G~i~P----l~~Ia~  276 (344)
                       +     ....+..+|.... .          +..+.++|++.++.. ...++++|.+... +| |.++|    ++.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~  243 (452)
T 3n5m_A          165 RRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE-LSETIAAFIMEPIITGGGILMAPQDYMKAVHE  243 (452)
T ss_dssp             GTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             hccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc-CCCCEEEEEEccccCCCCeeeCCHHHHHHHHH
Confidence             0     0112344443110 0          001167888888611 0124667777654 44 98887    877755


Q ss_pred             -HHhCCcEEEeccccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          277 -AHRNSWHVLLDATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                       |+++|+++++|-+|+ + |..    ..+.....+|++++|  |. +++. .++|++++++++.+.
T Consensus       244 l~~~~~~llI~DEv~~g~-g~~g~~~~~~~~~~~~di~t~s--K~-l~~G~~~ig~~~~~~~i~~~  305 (452)
T 3n5m_A          244 TCQKHGALLISDEVICGF-GRTGKAFGFMNYDVKPDIITMA--KG-ITSAYLPLSATAVKREIYEA  305 (452)
T ss_dssp             HHHHHTCEEEEECTTTTT-TTTSSSSGGGGTTCCCSEEEEC--GG-GGTTSSCCEEEEEEHHHHGG
T ss_pred             HHHHcCCEEEEecchhCC-CcccccchhhhcCCCCCEEeec--cc-ccCCCcceEEEEECHHHHHH
Confidence             689999999999998 4 432    233334568999887  87 5533 568999998876544

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=98.66  E-value=2.4e-07  Score=91.19  Aligned_cols=173  Identities=9%  Similarity=-0.005  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-cCCcC--HHHHHHHHH----
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------FRGNFYMT-IIGEE--LDYVREFAS----  219 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------~~Gd~ivS-~~eH~--~~~ir~la~----  219 (344)
                      .....++.+++++++++.+.+  .|+||+|+|||+..++..+..       ..++.|++ .-.+|  ......+..    
T Consensus        92 ~~~~~~~la~~l~~~~~~~~~--~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  169 (459)
T 4a6r_A           92 THPAVVELSSLLAEVTPAGFD--RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYM  169 (459)
T ss_dssp             CCHHHHHHHHHHHHHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhh
Confidence            344567888899999988765  799999999999887765421       13566553 33333  111111100    


Q ss_pred             -----cCCcEEEEEeCCC----CCCccC--------HHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH
Q 035915          220 -----FKESKVILAPEAW----LDLRIK--------GSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE  276 (344)
Q Consensus       220 -----~~G~kV~~vp~~~----~~g~i~--------~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~  276 (344)
                           .....+..++...    .+. .+        .++|++.+... ...++.+|.+..++ + |.+.|    ++.|.+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~-~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~  247 (459)
T 4a6r_A          170 HEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI-GADKVAAFVGEPIQGAGGVIVPPATYWPEIER  247 (459)
T ss_dssp             C---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence                 0111344444321    011 23        56788777631 01135666665444 3 88887    777754


Q ss_pred             -HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          277 -AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                       |+++|+++++|-+|+ + |...    ++.....+|++++|  |. +++. -.+|++++++++.+
T Consensus       248 l~~~~~~llI~DEv~~g~-gr~G~~~~~~~~~~~pdi~t~s--K~-l~gg~~~lg~v~~~~~i~~  308 (459)
T 4a6r_A          248 ICRKYDVLLVADEVICGF-GRTGEWFGHQHFGFQPDLFTAA--KG-LSSGYLPIGAVFVGKRVAE  308 (459)
T ss_dssp             HHHHTTCEEEEECTTTTT-TTTSSSSHHHHHTCCCSEEEEC--GG-GGTTSSCCEEEEECHHHHH
T ss_pred             HHHHcCCEEEEeccccCC-CcccccchHhhcCCCCCeeehh--hh-hcCCCCCccceeeCHHHHH
Confidence             699999999999998 4 4321    22224579999988  98 6643 35899998876544

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=98.65  E-value=6.2e-08  Score=94.16  Aligned_cols=167  Identities=11%  Similarity=0.006  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeE-EEcCCcC--HHHHHHHH----------H
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFY-MTIIGEE--LDYVREFA----------S  219 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~i-vS~~eH~--~~~ir~la----------~  219 (344)
                      .....++.++.++++++ .++  .|+||+|+|+|+.+++... .+..++.+ +..-.+|  ......+.          .
T Consensus        94 ~~~~~~~l~~~la~~~~-~~~--~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~  170 (434)
T 2epj_A           94 PGEAEVLLAEKILGYVK-RGG--MIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPT  170 (434)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEES
T ss_pred             CCHHHHHHHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCC
Confidence            34456778899999995 334  7999999999999877651 12234554 4443444  11110000          0


Q ss_pred             cCCc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEe
Q 035915          220 FKES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       220 ~~G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                      ..|+      .+..+|.+      +.++|++.++...  .++++|.+..++ + |.+.|    ++.|.+ |+++|+++++
T Consensus       171 ~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~  242 (434)
T 2epj_A          171 SAGVPEAVARLTLVTPYN------DVEALERVFAEYG--DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL  242 (434)
T ss_dssp             STTCCHHHHTTEEEEETT------CHHHHHHHHHHHG--GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCcccCceEecCCC------CHHHHHHHHHhCC--CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence            1232      24445532      5778888886310  136777776554 3 99998    877754 6899999999


Q ss_pred             ccccc-CcCCcc---CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          287 DATAL-VVGEDR---LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       287 DAaQa-~~G~~~---LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |.+|+ + ...+   ++.....+|++++|  |+ +|+.-.+|++++++++.+.
T Consensus       243 DEv~~g~-~~g~~~~~~~~~~~~di~s~s--K~-l~~G~~~G~v~~~~~~~~~  291 (434)
T 2epj_A          243 DEVVTGF-RLGLEGAQGYFNIEGDIIVLG--KI-IGGGFPVGAVAGSREVMSL  291 (434)
T ss_dssp             EETTTTT-TSSTTHHHHHHTCCCSEEEEE--GG-GGTTSSCEEEEECHHHHTT
T ss_pred             Ecchhce-eCCcchhhHHhCCCCCeeeec--ch-hcCCcceeeeeecHHHHHh
Confidence            99998 3 2211   11113468987664  99 7752248999998765543

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=98.65  E-value=6.9e-08  Score=95.89  Aligned_cols=174  Identities=12%  Similarity=0.071  Sum_probs=106.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC------CCCC-eEEE-cCCcC--HHHHHHH-----
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF------FRGN-FYMT-IIGEE--LDYVREF-----  217 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~------~~Gd-~ivS-~~eH~--~~~ir~l-----  217 (344)
                      ......++.+++++++++...+  .|+||+|+|||+.+++.....      .+|+ .+++ .-.+|  ......+     
T Consensus       115 ~~~~~~~~L~e~la~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~  192 (457)
T 3tfu_A          115 LTHEPAARLAKLLVDITPAGLD--TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHG  192 (457)
T ss_dssp             EECHHHHHHHHHHHHHSSTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-
T ss_pred             cCCHHHHHHHHHHHHhCCCCcC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcc
Confidence            3445667899999999987655  799999999999987664421      1344 5543 33333  1111100     


Q ss_pred             -----HHcCCcEEEEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeC-ccc--ccccc----HHHHHH-HHhCCcE
Q 035915          218 -----ASFKESKVILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPA-DIN--GTRYS----MHWISE-AHRNSWH  283 (344)
Q Consensus       218 -----a~~~G~kV~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~a-vSN--G~i~P----l~~Ia~-ar~~g~~  283 (344)
                           .......+..+|.... ....+.++|++.++...  .++++|.+.. .+|  |.++|    ++.|.+ |+++|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~--~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gil  270 (457)
T 3tfu_A          193 GMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA--GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVL  270 (457)
T ss_dssp             ---------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG--GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCE
T ss_pred             cccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC--CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence                 0001112333343211 11236678888886310  1467777776 554  88887    776654 6899999


Q ss_pred             EEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          284 VLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       284 vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      +++|-+|. + |...    ++.....+|++++|  |. +++. -.+|++++++++.+
T Consensus       271 lI~DEv~~g~-gr~G~~~a~~~~~~~pdiit~s--K~-l~gG~~~lG~v~~~~~i~~  323 (457)
T 3tfu_A          271 LIFDEIATGF-GRTGALFAADHAGVSPDIMCVG--KA-LTGGYLSLAATLCTADVAH  323 (457)
T ss_dssp             EEEECTTTTT-TTTSSSSTHHHHTCCCSEEEEC--GG-GGTTSSCCEEEEEEHHHHH
T ss_pred             EEEEcCccCC-ccccchhHhHhcCCCceEEEEC--hh-hhCCCcceEEEEEcHHHHH
Confidence            99999998 4 4321    12223579999887  88 6653 25899999887644

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=98.61  E-value=1.8e-07  Score=90.61  Aligned_cols=174  Identities=10%  Similarity=-0.029  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------CCCCeEE-EcCCcCHH--HHHHHHHcCC-
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------FRGNFYM-TIIGEELD--YVREFASFKE-  222 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------~~Gd~iv-S~~eH~~~--~ir~la~~~G-  222 (344)
                      .....++.+++++++++++++  +|+||+|+|||+.+++..+..       ..++.++ ..-.+|..  ....+..... 
T Consensus        70 ~~~~~~~l~~~la~~~~~~~~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  147 (430)
T 3i4j_A           70 SSDVLEEYAGRLARFVGLPTF--RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR  147 (430)
T ss_dssp             EEHHHHHHHHHHHHHTTCTTC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred             CCHHHHHHHHHHHHhCCCCCC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence            334557788889999998766  799999999999987765421       2355654 33334411  1111100000 


Q ss_pred             --------c--EEEEEeCCCC--CCccCHHHHHHHhhhcCCCCCeeEEEEe-Ccc-c-ccccc----HHHHHH-HHhCCc
Q 035915          223 --------S--KVILAPEAWL--DLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADI-N-GTRYS----MHWISE-AHRNSW  282 (344)
Q Consensus       223 --------~--kV~~vp~~~~--~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avS-N-G~i~P----l~~Ia~-ar~~g~  282 (344)
                              .  .+..+|.+..  .+..+.++|++.++.. ...++.+|.+. ..+ + |.+.|    ++.|.+ |+++|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~  226 (430)
T 3i4j_A          148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLERE-GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGI  226 (430)
T ss_dssp             --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHH-CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC
T ss_pred             ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhc-CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCC
Confidence                    0  2333443321  0223457788888631 00135666665 444 4 88887    777754 689999


Q ss_pred             EEEeccccc-CcCCcc----CCCC-CCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          283 HVLLDATAL-VVGEDR----LNLA-LHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       283 ~vlvDAaQa-~~G~~~----LDLs-~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ++++|-+|+ + |...    ++.- ...+|.+++|  |. +++- -.+|++++++++.+
T Consensus       227 ~li~DEv~~~~-~~~g~~~~~~~~~~~~~di~t~s--K~-l~~G~~r~G~~~~~~~i~~  281 (430)
T 3i4j_A          227 IFIADEVMSGM-GRCGSPLALSRWSGVTPDIAVLG--KG-LAAGYAPLAGLLAAPQVYE  281 (430)
T ss_dssp             EEEEECTTTTT-TTTSSSSGGGGTTTCCCSEEEEC--GG-GTTTSSCCEEEEECHHHHH
T ss_pred             EEEEechhhCC-CcccchhhhhhhcCCCCcEEEEc--cc-ccCCccccEEEEECHHHHH
Confidence            999999998 4 4321    2222 4468999888  99 7731 22799998876543

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.61  E-value=3.1e-07  Score=92.99  Aligned_cols=167  Identities=14%  Similarity=0.021  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeE-EEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HHHH-HHH--HHcCCc--EEE
Q 035915          157 PEIQARNKVLKHCGLPDDEYLV-LFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LDYV-REF--ASFKES--KVI  226 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~V-VFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~~i-r~l--a~~~G~--kV~  226 (344)
                      ...-|+++..++||++..+|.| |=-.+++.|+..|..++ +++||.|++ .+.|.   .... -..  ....|.  ++.
T Consensus       101 iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al-l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~  179 (490)
T 3ou5_A          101 IELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESM  179 (490)
T ss_dssp             HHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-CC-CCCEECBC----------------------------
T ss_pred             HHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-cCCCCEEEecccCCCCcccccccCCCccccccccccccc
Confidence            4478899999999998765432 22247778888887777 689999874 33332   1111 000  011122  222


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC---
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL---  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~---  302 (344)
                      .-+++..++.||.+++++.....    +++|+.+-+...-...|++.+++ |.+.|+++++|++|.+ |.+-=.+-.   
T Consensus       180 ~Y~vd~~t~~IDyd~~~~~A~~~----kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHia-GLVA~g~~psP~  254 (490)
T 3ou5_A          180 PYKLNPKTGLIDYNQLALTARLF----RPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHIS-GLVAAKVIPSPF  254 (490)
T ss_dssp             CBCEETTTTEECHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGH-HHHHTTSSCCGG
T ss_pred             ccccCCCCCcccHHHHHHHHhhc----CCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhh-hhhcccccCCcc
Confidence            23445556889999999887653    46788887654688899998876 5889999999999987 654222111   


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      -.+|+++.|-||. |.||+ -|+++.|++
T Consensus       255 ~~ADvVTtTTHKT-LrGPr-GG~Il~~~~  281 (490)
T 3ou5_A          255 KHADIVTTTTHKT-LRGAR-SGLIFYRKG  281 (490)
T ss_dssp             GTCSEEEEESSST-TCSCS-CEEEEEECS
T ss_pred             ccceEEecccccc-ccCCC-ceEEEeccc
Confidence            1389999999999 77796 466666764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=98.57  E-value=2.1e-07  Score=91.96  Aligned_cols=173  Identities=9%  Similarity=-0.048  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-CCCCeEE-EcCCcC--HHHHHHHHH-----cCC--
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-FRGNFYM-TIIGEE--LDYVREFAS-----FKE--  222 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-~~Gd~iv-S~~eH~--~~~ir~la~-----~~G--  222 (344)
                      ......+.+++++++++.+.. ..|+||+|+|||+..++..... ..++.++ ..-.+|  ......+..     +.+  
T Consensus       105 ~~~~~~~la~~l~~~~~~~~~-~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  183 (453)
T 4ffc_A          105 PYEQYVQVAELLNALTPGDHD-KRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFG  183 (453)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSC-EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSC
T ss_pred             CCHHHHHHHHHHHHhCCCCCC-cEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCC
Confidence            344567788999999986421 2799999999999987754311 1235554 333344  222222110     011  


Q ss_pred             ---cEEEEEeCCC----CCCcc-------CHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCC
Q 035915          223 ---SKVILAPEAW----LDLRI-------KGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNS  281 (344)
Q Consensus       223 ---~kV~~vp~~~----~~g~i-------~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g  281 (344)
                         ..+..+|...    ..+..       ..+.|++.+.++    .+.+|.+..++ + |.+.|    ++.|.+ |+++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~----~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~  259 (453)
T 4ffc_A          184 PFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ----SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENG  259 (453)
T ss_dssp             SCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG----GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred             CCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC----CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence               1455555531    11110       123444444332    35666665554 4 88887    776654 68999


Q ss_pred             cEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          282 WHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       282 ~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++++|-+|. + |...    .+.....+|++++|  |. +++.-.+|+++.++++.+.
T Consensus       260 ~llI~DEv~~g~-g~~g~~~a~~~~~~~pdi~t~s--K~-~~~G~~~G~~~~~~~i~~~  314 (453)
T 4ffc_A          260 VVFIADEVQTGF-ARTGAWFASEHEGIVPDIVTMA--KG-IAGGMPLSAVTGRAELMDA  314 (453)
T ss_dssp             CEEEEECTTTTT-TTTSSSSTHHHHTCCCSEEEEC--GG-GGTTSSCEEEEEEHHHHTT
T ss_pred             CEEEEecCccCC-CcccccchhhhcCCCcchHhhh--hh-hcCCcCeEEEEECHHHHhh
Confidence            9999999997 4 4321    12223568999988  98 6643458999998876544

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=98.56  E-value=4.7e-08  Score=95.01  Aligned_cols=165  Identities=10%  Similarity=-0.040  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-cCCcCHHHHHHHHHcCCc----------
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYMT-IIGEELDYVREFASFKES----------  223 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~ivS-~~eH~~~~ir~la~~~G~----------  223 (344)
                      ....+.+++++++++ .++  .|+||+|+|||+++++.... ...++.++. .-.+|......+ ...|.          
T Consensus        93 ~~~~~l~~~la~~~~-~~~--~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~-~~~g~~~~~~~~~~~  168 (429)
T 3k28_A           93 EIENKLAKLVIERVP-SIE--IVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLL-IKAGSGVATLGLPDS  168 (429)
T ss_dssp             HHHHHHHHHHHHHST-TCS--EEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGC-SSCCTTC-----CCC
T ss_pred             HHHHHHHHHHHHhCC-CCC--EEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHH-HhcCCcccccCCCCc
Confidence            345667888999986 444  79999999999998776431 123455542 223331000000 00111          


Q ss_pred             ---------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEec
Q 035915          224 ---------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       224 ---------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvD  287 (344)
                               .+..+|.+      +.++|+++++...  .++.+|.+...+ + |.+.|    ++.|.+ |+++|+++++|
T Consensus       169 ~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D  240 (429)
T 3k28_A          169 PGVPEGVAKNTITVAYN------DLESVKYAFEQFG--DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD  240 (429)
T ss_dssp             TTCCHHHHTTEEEEETT------CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCcccCceeecCCC------CHHHHHHHHHhCC--CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                     22333322      5678888886311  135666666555 3 88998    877765 68999999999


Q ss_pred             ccccCc--CCc-cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          288 ATALVV--GED-RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa~~--G~~-~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      -+|.-.  |.. ..+.....+|++++|  |. ||+...+|++++++++.+.
T Consensus       241 Ev~~g~~~g~~~~~~~~~~~~di~t~s--K~-~~~G~~iG~~~~~~~~~~~  288 (429)
T 3k28_A          241 EVMTGFRVAYNCGQGYYGVTPDLTCLG--KV-IGGGLPVGAYGGKAEIMRQ  288 (429)
T ss_dssp             CTTTTTTSSTTHHHHHHTCCCSEEEEC--GG-GGTTSCCEEEEECHHHHTT
T ss_pred             ccccccccCcchHHHHhCCCCceehhh--hh-hcCCCCeEEEEEcHHHHhh
Confidence            999610  111 111223468998887  98 7765679999998766543

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=98.56  E-value=7.2e-07  Score=87.87  Aligned_cols=173  Identities=9%  Similarity=0.063  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-cCCcC--HHHHHHHH------
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------FRGNFYMT-IIGEE--LDYVREFA------  218 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------~~Gd~ivS-~~eH~--~~~ir~la------  218 (344)
                      ....++.+++++++++.+++  .|+||+|+|||+..++..+..       ..++.|++ .-.+|  ......+.      
T Consensus        94 ~~~~~~la~~l~~~~~~~~~--~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  171 (460)
T 3gju_A           94 TEASITLAKMIIDRAPKGMS--RVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFH  171 (460)
T ss_dssp             CHHHHHHHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGT
T ss_pred             CHHHHHHHHHHHhhCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccc
Confidence            34567788899999877655  799999999999987765421       13456553 33333  11111110      


Q ss_pred             ---HcCCcEEEEEeCCC----CCCccC--------HHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-
Q 035915          219 ---SFKESKVILAPEAW----LDLRIK--------GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-  276 (344)
Q Consensus       219 ---~~~G~kV~~vp~~~----~~g~i~--------~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-  276 (344)
                         ......+..+|...    .+...+        .++|++.+... ...++++|.+..++|  |.+.|    ++.|.+ 
T Consensus       172 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~-~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l  250 (460)
T 3gju_A          172 NAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE-GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAV  250 (460)
T ss_dssp             TTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred             cccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHH
Confidence               00112344555321    110122        46788877631 011366666665554  77777    776754 


Q ss_pred             HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |+++|+++++|-+|. + |...    ++.....+|++++|  |. +++. -.+|++++++++.+
T Consensus       251 ~~~~~~llI~DEv~~g~-gr~g~~~~~~~~~~~pdi~t~s--K~-l~gG~~~lg~v~~~~~i~~  310 (460)
T 3gju_A          251 LKKYDVLLVADEVVTGF-GRLGTMFGSDHYGIKPDLITIA--KG-LTSAYAPLSGVIVADRVWQ  310 (460)
T ss_dssp             HHHTTCEEEEECTTTTT-TTTSSSCHHHHHTCCCSEEEEC--GG-GTTTSSCCEEEEEEHHHHH
T ss_pred             HHHcCCEEEEeccccCC-CcccccchHhhcCCCCCeeeee--hh-hcCCCCCeEEEEECHHHHH
Confidence            689999999999998 5 5331    12224578999988  99 7753 25799998876554

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=98.53  E-value=8.5e-07  Score=87.39  Aligned_cols=177  Identities=7%  Similarity=-0.010  Sum_probs=102.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-CCCCeEEE-cCCcC--HHHHHHHHH-----cC---
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-FRGNFYMT-IIGEE--LDYVREFAS-----FK---  221 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-~~Gd~ivS-~~eH~--~~~ir~la~-----~~---  221 (344)
                      ......+.+++++++++.... ..|+||+|+|||+..++..... ..++.+++ .-.+|  ......+..     +.   
T Consensus       102 ~~~~~~~la~~l~~~~~~~~~-~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  180 (451)
T 3oks_A          102 PYEGYVAVCEQLNRLTPVRGD-KRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFG  180 (451)
T ss_dssp             CCHHHHHHHHHHHHHSSCCSS-EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCcCCC-CEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCC
Confidence            344556788889999875421 2799999999999987754311 12355553 33344  222211100     01   


Q ss_pred             --CcEEEEEeCCCC--------C----CccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhC
Q 035915          222 --ESKVILAPEAWL--------D----LRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-AHRN  280 (344)
Q Consensus       222 --G~kV~~vp~~~~--------~----g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~  280 (344)
                        ...+..+|....        +    +..+.+.+.+.+.......++.+|.+..++ + |.+.|    ++.|.+ |+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~  260 (451)
T 3oks_A          181 PFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN  260 (451)
T ss_dssp             SCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT
T ss_pred             CCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc
Confidence              124556665410        0    001233333444321111235666666554 4 88887    877754 6999


Q ss_pred             CcEEEeccccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          281 SWHVLLDATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       281 g~~vlvDAaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      |+++++|-+|. + |..    .++.....+|++++|  |. +|+.-.+|+++.++++.+.
T Consensus       261 g~~lI~DEv~~g~-g~~g~~~~~~~~~~~pdi~t~s--K~-l~~G~~iG~v~~~~~~~~~  316 (451)
T 3oks_A          261 DVVFIADEVQTGF-ARTGAMFACEHEGIDPDLIVTA--KG-IAGGLPLSAVTGRAEIMDS  316 (451)
T ss_dssp             TCEEEEECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTTSSCEEEEEEHHHHTC
T ss_pred             CCEEEEEecccCC-CccccchhhhhcCCCCCeeeeh--hh-hhCCcceEEEEECHHHHhh
Confidence            99999999998 4 432    122234568999887  99 7653458999988876554

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=98.52  E-value=9.1e-07  Score=86.67  Aligned_cols=172  Identities=13%  Similarity=0.069  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC---CC----CCeEEE-cCCcCHH--HHHHHHH----c
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF---FR----GNFYMT-IIGEELD--YVREFAS----F  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~---~~----Gd~ivS-~~eH~~~--~ir~la~----~  220 (344)
                      ....++.+++++++++...+  .|+||+|+|||+..++.....   .+    ++.|+. .-.+|..  ....+..    +
T Consensus        86 ~~~~~~la~~l~~~~~~~~~--~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  163 (448)
T 3dod_A           86 NVPATQLAETLIDISPKKLT--RVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH  163 (448)
T ss_dssp             EHHHHHHHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred             CHHHHHHHHHHHHhCCCCCC--EEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence            34557788889999876554  799999999999987765421   02    366553 2233311  0111000    0


Q ss_pred             -----CCcEEEEEeCCCCCCc-----------cCHHHHHHHhhhcCCCCCeeEEEEe-Cc-cc-ccccc----HHHHHH-
Q 035915          221 -----KESKVILAPEAWLDLR-----------IKGSQLSQYFRRKCKHTPKGLFSYP-AD-IN-GTRYS----MHWISE-  276 (344)
Q Consensus       221 -----~G~kV~~vp~~~~~g~-----------i~~~~L~~~l~~~~~~~~t~LVa~~-av-SN-G~i~P----l~~Ia~-  276 (344)
                           ....+..+|... ..+           .+.++|++.+....  .++++|.+. .. ++ |.+.|    ++.|.+ 
T Consensus       164 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l  240 (448)
T 3dod_A          164 HVYGPLMFESYKAPIPY-VYRSESGDPDECRDQCLRELAQLLEEHH--EEIAALSIESMVQGASGMIVMPEGYLAGVREL  240 (448)
T ss_dssp             ---------CEEECCCC-CTTSSSCCHHHHHHHHHHHHHHHHHHHG--GGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred             ccccCCCCCceEeCCCc-cccCCccchhhhhHHHHHHHHHHHHhCC--CCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence                 011233444432 111           13677888886210  135555554 44 44 87877    777754 


Q ss_pred             HHhCCcEEEeccccc-CcCCc----cCCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          277 AHRNSWHVLLDATAL-VVGED----RLNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       277 ar~~g~~vlvDAaQa-~~G~~----~LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                      |+++|+++++|-+|+ + |..    ..+.....+|++++|  |. +++. ..+|++++++++.+.
T Consensus       241 ~~~~~~~lI~DEv~~g~-g~~g~~~a~~~~~~~~di~t~s--K~-l~~G~~~ig~v~~~~~~~~~  301 (448)
T 3dod_A          241 CTTYDVLMIVDEVATGF-GRTGKMFACEHENVQPDLMAAG--KG-ITGGYLPIAVTFATEDIYKA  301 (448)
T ss_dssp             HHHTTCEEEEECTTTTT-TTTSSSSGGGGGTCCCSEEEEC--GG-GGTTSSCCEEEEEEHHHHHT
T ss_pred             HHHhCCEEEEeccccCC-CcccchhhhhhcCCCCCEEEec--cc-ccCCcCceEEEEECHHHHHH
Confidence            689999999999998 4 432    123334568999988  98 6643 257999998876543

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=98.43  E-value=4e-07  Score=88.13  Aligned_cols=167  Identities=15%  Similarity=0.052  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEE-EcCCcC--HHHHHHHH----------Hc
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYM-TIIGEE--LDYVREFA----------SF  220 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~iv-S~~eH~--~~~ir~la----------~~  220 (344)
                      ....++.++.++++++ .++  .|+||+|+|+|+.+++.. ..+..++.++ ..-.+|  ...+..++          ..
T Consensus        91 ~~~~~~l~~~l~~~~~-~~~--~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~  167 (424)
T 2e7u_A           91 SPLEVALAKKVKRAYP-FVD--LVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSS  167 (424)
T ss_dssp             CHHHHHHHHHHHHHCT-TCC--EEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESS
T ss_pred             CHHHHHHHHHHHHhCC-CCC--EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCC
Confidence            3456778889999986 444  799999999999987764 0112345543 333333  11110000          01


Q ss_pred             CCc------EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHHHHhCCcEEEecc
Q 035915          221 KES------KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISEAHRNSWHVLLDA  288 (344)
Q Consensus       221 ~G~------kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~ar~~g~~vlvDA  288 (344)
                      .|+      .+..+|.      .+.++|++.++...  .++++|.+..++ | |.+.|    ++.|.+++++|+++++|-
T Consensus       168 ~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~g~~lI~DE  239 (424)
T 2e7u_A          168 AGVPEEYAKLTLVLEY------NDPEGLREVLKRRG--EEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKAYGVLLIADE  239 (424)
T ss_dssp             TTCCHHHHTTEEEECT------TCHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCHHHHHHHHHGGGGTCEEEEEC
T ss_pred             CCCCCccCCceEeCCC------CCHHHHHHHHHhCC--CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHcCCEEEEec
Confidence            122      2444443      25778888886310  135667665544 4 98988    776654477899999999


Q ss_pred             cccCcCCcc---CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          289 TALVVGEDR---LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       289 aQa~~G~~~---LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +|+-.....   ++.....+|++++  .|+ ||+.-.+|++++++++.+.
T Consensus       240 v~~g~~~g~~~~~~~~~~~~di~s~--sK~-l~~G~~~G~~~~~~~~~~~  286 (424)
T 2e7u_A          240 VMTGFRLAFGGATELLGLKPDLVTL--GKI-LGGGLPAAAYAGRREIMEK  286 (424)
T ss_dssp             TTTTTTSSTTHHHHHHTCCCSEEEE--CGG-GGTTSSCEEEEECHHHHTT
T ss_pred             CccccccchhHHHHHhCCCcchhhh--hhh-hhCCcceEEEEEcHHHHhh
Confidence            998212111   1112346898754  599 7753458999998765543

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=98.40  E-value=1.8e-06  Score=86.14  Aligned_cols=173  Identities=9%  Similarity=-0.028  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCC-------CCCCeEEE-cCCcC--HHHHHHH------
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPF-------FRGNFYMT-IIGEE--LDYVREF------  217 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~-------~~Gd~ivS-~~eH~--~~~ir~l------  217 (344)
                      ......+.+++++++++.+.+  .|+||+|+|||+..++....-       ..++.+++ .-.+|  ......+      
T Consensus        97 ~~~~~~~lae~l~~~~~~~~~--~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~  174 (472)
T 3hmu_A           97 THVPAIALAQKLAELAPGDLN--HVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGM  174 (472)
T ss_dssp             ECHHHHHHHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhh
Confidence            344567788899999987655  799999999999877664321       12445543 33333  1111111      


Q ss_pred             HHc--CCcEEEEEeCCC----CCCccC--------HHHHHHHhhhcCCCCCeeEEEEeCccc--ccccc----HHHHHH-
Q 035915          218 ASF--KESKVILAPEAW----LDLRIK--------GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYS----MHWISE-  276 (344)
Q Consensus       218 a~~--~G~kV~~vp~~~----~~g~i~--------~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~P----l~~Ia~-  276 (344)
                      ...  ....+..+|...    .+. .+        .++|++.++.. ...++.+|.+.-++|  |.+.|    ++.|.+ 
T Consensus       175 ~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~-~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l  252 (472)
T 3hmu_A          175 HAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILEL-GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRI  252 (472)
T ss_dssp             HHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhc-CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHH
Confidence            000  111344455322    011 22        56777777631 012466777754543  88888    777754 


Q ss_pred             HHhCCcEEEeccccc-CcCCcc----CCCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATAL-VVGEDR----LNLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa-~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      |+++|+++++|-+|. + |...    .+.....+|++++|  |. +|+. -.+|++++++++.+
T Consensus       253 ~~~~gillI~DEv~~gf-gr~G~~~a~~~~~v~pdi~t~s--K~-l~gg~~plG~v~~~~~i~~  312 (472)
T 3hmu_A          253 CDKYDILLIADEVICGF-GRTGNWFGTQTMGIRPHIMTIA--KG-LSSGYAPIGGSIVCDEVAH  312 (472)
T ss_dssp             HHHTTCEEEEECTTTTT-TTTSSSCHHHHHTCCCSEEEEC--GG-GTTTSSCCEEEEEEHHHHH
T ss_pred             HHHcCCEEEEEccccCC-cccCccchhHHhCCCCceeeec--hh-hhcCCcceEEEEECHHHHH
Confidence            699999999999998 4 4321    11223579999988  98 6653 24899999887654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=98.37  E-value=1.6e-06  Score=86.33  Aligned_cols=75  Identities=8%  Similarity=0.055  Sum_probs=53.0

Q ss_pred             CHHHHHHHhhhcCC-CCCeeEEEEeCcc-c-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCcc--CCCCCCC--
Q 035915          238 KGSQLSQYFRRKCK-HTPKGLFSYPADI-N-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDR--LNLALHR--  304 (344)
Q Consensus       238 ~~~~L~~~l~~~~~-~~~t~LVa~~avS-N-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~--LDLs~l~--  304 (344)
                      +.++|++++++... ..++++|++..++ + |.++|    ++.|.+ |+++|+++++|.+|. + |...  +.+..++  
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~-g~~g~~~~~~~~gv~  319 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGG-GSTGKFWAHEHWGLD  319 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTTSSSSGGGGGCCS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCC-CCCCCchhccccCCC
Confidence            46778888864100 0147888886554 3 98888    877754 689999999999998 6 6542  3444434  


Q ss_pred             --CcEEEEccccC
Q 035915          305 --PDFVLCNLDNT  315 (344)
Q Consensus       305 --~DFvv~S~HK~  315 (344)
                        +|++++|  |+
T Consensus       320 ~~~Di~t~s--K~  330 (472)
T 1ohv_A          320 DPADVMTFS--KK  330 (472)
T ss_dssp             SCCSEEEEC--GG
T ss_pred             CCCCEEEEc--cc
Confidence              8999998  97

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=98.32  E-value=3.9e-06  Score=83.64  Aligned_cols=175  Identities=8%  Similarity=0.021  Sum_probs=102.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-C------CCCCeEEE-cCCcC--HHHHHHHHH----
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-F------FRGNFYMT-IIGEE--LDYVREFAS----  219 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~------~~Gd~ivS-~~eH~--~~~ir~la~----  219 (344)
                      .....++..++++++++.+.+  .|+||+|+|||+..++.... +      ..++.|++ .-.+|  ......+..    
T Consensus        95 ~~~~~~~la~~l~~~~~~~~~--~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~  172 (476)
T 3i5t_A           95 ATSPAARLAEKIATLTPGDLN--RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN  172 (476)
T ss_dssp             BCHHHHHHHHHHHTTSSTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred             CCHHHHHHHHHHHhcCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence            345567788889999976655  79999999999988766541 1      12345543 33334  211111100    


Q ss_pred             c--C---CcEEEEEeCCCC-CC-ccC--------HHHHHHHhhhcCCCCCeeEEEEeCcc-c-ccccc----HHHHHH-H
Q 035915          220 F--K---ESKVILAPEAWL-DL-RIK--------GSQLSQYFRRKCKHTPKGLFSYPADI-N-GTRYS----MHWISE-A  277 (344)
Q Consensus       220 ~--~---G~kV~~vp~~~~-~g-~i~--------~~~L~~~l~~~~~~~~t~LVa~~avS-N-G~i~P----l~~Ia~-a  277 (344)
                      +  .   ...+..++.... .. ..+        .++|++.+... ...++.+|.+.-++ + |.+.|    ++.|.+ |
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc  251 (476)
T 3i5t_A          173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESL-GPDTIAAFLAEPILASGGVIIPPAGYHARFKAIC  251 (476)
T ss_dssp             CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence            0  0   112333332210 00 011        56788877631 00135666665444 3 77776    776754 6


Q ss_pred             HhCCcEEEeccccc-CcCCcc----CC-CCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCccc
Q 035915          278 HRNSWHVLLDATAL-VVGEDR----LN-LALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFDT  335 (344)
Q Consensus       278 r~~g~~vlvDAaQa-~~G~~~----LD-Ls~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~~  335 (344)
                      +++|+++++|-+|+ + |..-    .. .....+|++++|  |. +|+. -.+|++++++++.+.
T Consensus       252 ~~~gillI~DEv~~g~-gr~G~~~~~~~~~~v~pdi~t~s--K~-l~~G~~plg~v~~~~~i~~~  312 (476)
T 3i5t_A          252 EKHDILYISDEVVTGF-GRCGEWFASEKVFGVVPDIITFA--KG-VTSGYVPLGGLAISEAVLAR  312 (476)
T ss_dssp             HHTTCEEEEECTTTTT-TTTSSSCHHHHTTCCCCSEEEEC--GG-GGTTSSCCEEEEECHHHHHT
T ss_pred             HHcCCEEEEEecccCC-ccccCceeeecccCCCcchhhhh--hh-hcCCCcCeEEEEECHHHHHH
Confidence            99999999999998 4 4321    22 334569999988  98 7653 347999998865443

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.31  E-value=2.3e-06  Score=87.02  Aligned_cols=165  Identities=8%  Similarity=-0.048  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CC-CCC-CCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeC--CC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YP-FFR-GNFY-MTIIGEELDYVREFASFKESKVILAPE--AW  232 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~-~~~-Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~--~~  232 (344)
                      +..=...++.+|.+.. ...++++|+|.++..+.-+ .. -++ |+.| +.-..|.+ .+..+ .-.|++.++++.  +.
T Consensus       119 n~l~ld~L~~~G~~~~-~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKS-v~kAl-iL~Gl~Pv~V~p~~d~  195 (501)
T 3hl2_A          119 NSLVLDIIKLAGVHTV-ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS-CFKSM-ITAGFEPVVIENVLEG  195 (501)
T ss_dssp             HHHHHHHHHHTTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH-HHHHH-HHTTCEEEEECEEEET
T ss_pred             HHHHHHHHHHcCCCCC-CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHH-HHHHH-HHcCCeEEEEeeeecc
Confidence            4444444555698743 3688999999766543332 21 112 3775 45555552 12221 224888888754  22


Q ss_pred             CCCccCHHHHHHHhhhcCCCCCeeEEEEeCcc-c--cccccHHHHHH-HHhCCcEEEecccccCcCCccC-CC--C--CC
Q 035915          233 LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADI-N--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL-NL--A--LH  303 (344)
Q Consensus       233 ~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avS-N--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L-DL--s--~l  303 (344)
                      ....++.++|++++....  ....++.++..+ +  |..-||+.|++ ||++|++++||.||.+ -.... ++  +  .+
T Consensus       196 ~~~~id~e~le~aI~e~g--a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGa-h~~~~~~lp~sA~~~  272 (501)
T 3hl2_A          196 DELRTDLKAVEAKVQELG--PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGV-QSSKCMHLIQQGARV  272 (501)
T ss_dssp             TEEEECHHHHHHHHHHHC--GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCT-TCHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHhcC--CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchh-hhhhhhhhHHHHHhc
Confidence            246789999999997531  122333333333 4  36689988865 6999999999999886 32121 11  1  24


Q ss_pred             C-CcEEEEccccCCCCCCCceEEEEEeC
Q 035915          304 R-PDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       304 ~-~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      + +|+++.|.||+ +-.|.|-|+++.++
T Consensus       273 GrAD~vVqS~HK~-llvpIGG~ii~~~d  299 (501)
T 3hl2_A          273 GRIDAFVQSLDKN-FMVPVGGAIIAGFN  299 (501)
T ss_dssp             SCCCEEEEEHHHH-HCCCSSCEEEEESC
T ss_pred             CCCcEEEeccccc-ceeecCceEEEeCC
Confidence            5 99999999999 55698866666665

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=97.77  E-value=0.00067  Score=66.45  Aligned_cols=163  Identities=9%  Similarity=-0.027  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHc-CC-----CCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          159 IQARNKVLKHC-GL-----PDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       159 e~AR~~IA~~L-ga-----~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+.|+.|++++ +.     ++++.+|+.|.|+++|+.+++..+. +.+ |.++ ..-.+. . ....++..|.+++.+|.
T Consensus        75 ~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~-~-~~~~~~~~g~~~~~v~~  151 (405)
T 3k7y_A           75 EDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYI-N-HVNMIESRGFNLKYINF  151 (405)
T ss_dssp             HHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCH-H-HHHHHHTTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCH-h-HHHHHHHcCCeEEEEec
Confidence            44677777765 32     1222247999999999999887653 236 7754 222222 1 23345667999999987


Q ss_pred             -CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCc-cc--cccccHHHHH----HHHhCCcEEEecccccCcCCccCC---
Q 035915          231 -AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPAD-IN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLN---  299 (344)
Q Consensus       231 -~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~av-SN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LD---  299 (344)
                       +..+..++.++|++.++..   .+++++.+... +|  |..++.+.+.    .+++++++++.|-+..-......+   
T Consensus       152 ~~~~~~~~d~~~l~~~l~~~---~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~  228 (405)
T 3k7y_A          152 FDYNLIDINYDLFLNDLRNI---PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDV  228 (405)
T ss_dssp             EETTTTEECHHHHHHHHHHS---CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGG
T ss_pred             cccccCCcCHHHHHHHHHhC---CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccch
Confidence             3323568999999988642   13456655432 35  9999996553    247899999999765410111110   


Q ss_pred             -----CCCC-CCcEEEEccccCCCCCCC-ceEEEEE
Q 035915          300 -----LALH-RPDFVLCNLDNTQNAQPS-KITCLLI  328 (344)
Q Consensus       300 -----Ls~l-~~DFvv~S~HK~l~G~P~-GiG~L~V  328 (344)
                           +... .--+++.|+=|. |+.|. .+|.+++
T Consensus       229 ~~~~~~~~~~~~~i~~~S~SK~-~~l~GlRiG~~~~  263 (405)
T 3k7y_A          229 LLIRKFEEKNIAFSVCQSFSKN-MSLYGERAGALHI  263 (405)
T ss_dssp             HHHHHHHTTTCCEEEEEECTTT-SCCTTTTEEEEEE
T ss_pred             HHHHHHHhcCCcEEEEeeCCcc-CCCccccceEEEE
Confidence                 1111 223778899999 88552 4888864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=96.90  E-value=4.7e-06  Score=83.91  Aligned_cols=165  Identities=11%  Similarity=0.002  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-CCCCCeEEE-cCCcCHHHHHHHH--HcCCc--EEEEEe
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-FFRGNFYMT-IIGEELDYVREFA--SFKES--KVILAP  229 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-~~~Gd~ivS-~~eH~~~~ir~la--~~~G~--kV~~vp  229 (344)
                      ....+..++++++++ ..+  .|+|++++|||+..++.... +..++.|+. .-.+|......+.  ...|+  .+..+|
T Consensus       140 ~~~~~Lae~L~~~~p-~~~--~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~  216 (465)
T 2yky_A          140 ENEALFAEAVCDRFP-SID--LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV  216 (465)
Confidence            345677788888885 233  69999999999988776432 223455543 3233311111111  11233  233333


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeC-ccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCcc---CC
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPA-DIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDR---LN  299 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~a-vSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~---LD  299 (344)
                      .+      +.++|++.++..  ..++++|.+.. .+| |.+.|    ++.|.+ ++++|+++++|-+|+. -..+   ++
T Consensus       217 ~~------d~~~l~~~l~~~--~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~~-r~g~~~a~~  287 (465)
T 2yky_A          217 YN------DVEGTADLLKRH--GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQE  287 (465)
Confidence            21      456777777631  02456666654 345 98887    666654 6889999999999982 1111   22


Q ss_pred             CCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      .....+|++++|  |+ +|+.-.+|+++.++++.+.
T Consensus       288 ~~gv~pDi~t~s--K~-lg~G~piG~v~~~~~i~~~  320 (465)
T 2yky_A          288 MLGISADLTTLG--KY-IGGGMSFGAFGGRRDLMER  320 (465)
Confidence            223458987655  99 8742338999989887664

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=96.51  E-value=0.0017  Score=65.23  Aligned_cols=160  Identities=9%  Similarity=-0.030  Sum_probs=90.0

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEEEc-CCcC--HHHHHHH--HHcCCcEEEEEeCCCC
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYMTI-IGEE--LDYVREF--ASFKESKVILAPEAWL  233 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~ivS~-~eH~--~~~ir~l--a~~~G~kV~~vp~~~~  233 (344)
                      +..+.|++.+.. .+  .|.|++++|||+..++... .+...+.|++. -.+|  ....-..  .......+..+|.+  
T Consensus       131 ~lae~l~~~~p~-~~--~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n--  205 (454)
T 4ao9_A          131 RLARLICERFPQ-IE--QLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN--  205 (454)
T ss_dssp             HHHHHHHHHSTT-CS--EEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT--
T ss_pred             HHHHHHHHhCCC-CC--EEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc--
Confidence            445567777753 22  7999999999987655421 11122345432 2233  1100000  00012234445543  


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEe-Cccc-ccccc----HHHHHH-HHhCCcEEEecccccCcCCccCCC----CC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYP-ADIN-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDRLNL----AL  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~-avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL----s~  302 (344)
                          +.+.+++.+.+..  ..+..|.+- .++| |.+.|    ++.+.+ |+++|+++++|=+|.  |..---.    -.
T Consensus       206 ----d~~~l~~~l~~~~--~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~g  277 (454)
T 4ao9_A          206 ----DAQTARAQIERHG--PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKLG  277 (454)
T ss_dssp             ----CHHHHHHHHHHTG--GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHHT
T ss_pred             ----hHHHHHHHHhhcC--CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCccccchhccC
Confidence                4567777776421  134455554 4445 88888    666654 689999999999985  3211111    12


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ..||+++++  |. +|+-..+|++..+++..+.
T Consensus       278 v~PDi~t~g--K~-lggG~Piga~~~~~ei~~~  307 (454)
T 4ao9_A          278 IRSDLTTLG--KY-IGGGMSFGAFGGRADVMAL  307 (454)
T ss_dssp             CCCSEEEEE--GG-GGTTSSCEEEEECHHHHGG
T ss_pred             CCCcEEEec--cc-cCCCCcceeeeeHHHHHHH
Confidence            569999876  55 3332348999999876654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=96.01  E-value=0.17  Score=49.90  Aligned_cols=202  Identities=10%  Similarity=-0.070  Sum_probs=106.7

Q ss_pred             CCCCCCcccccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHc-CCCCC-CC-eEEEeCCHHHHHHHHHhhCC---
Q 035915          123 GSNLPDLDRTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHC-GLPDD-EY-LVLFTPNYRDAMMLVGESYP---  196 (344)
Q Consensus       123 Ga~lp~~s~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~L-ga~p~-ey-~VVFTsnaTeAlnlva~sl~---  196 (344)
                      |.+ |....|+++.+++.+.-.. -.|....   -+.+-|+.+++++ |-... +. ..+=|.++|.|+...+..+.   
T Consensus        59 g~~-~vl~~Vk~A~~~~~~~~~~-~~Y~p~~---G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~  133 (420)
T 4h51_A           59 GRP-YPLRVVRKAEQLLLDMNLD-YEYLPIS---GYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVF  133 (420)
T ss_dssp             SCB-CCCHHHHHHHHHHHHTTCC-CCCCCTT---CCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTS
T ss_pred             CCC-CCCHHHHHHHHHHhcCCCC-CCCCCcC---ChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhc
Confidence            444 4333577766666543111 1233211   1234566666654 43211 11 23448899999887655432   


Q ss_pred             CCCCCeE-EEcCCcCHHHHHHHHHcCCcE-EEEEeC-CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH
Q 035915          197 FFRGNFY-MTIIGEELDYVREFASFKESK-VILAPE-AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM  271 (344)
Q Consensus       197 ~~~Gd~i-vS~~eH~~~~ir~la~~~G~k-V~~vp~-~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl  271 (344)
                      ..+||+| +..-.... . ....+..|.+ |...+. +.....++.+.+.+.+....  .++.++.....+|  |..++.
T Consensus       134 ~~pgd~V~ip~P~w~~-y-~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~vll~~~p~NPtG~~~~~  209 (420)
T 4h51_A          134 DAETTPIYLSDPTWPN-H-YGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP--DGSVFILHQCAHNPTGVDPSQ  209 (420)
T ss_dssp             CTTTSCEEEEESCCTH-H-HHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC--SSCEEEEESSSCTTTCCCCCH
T ss_pred             CCCCCEEEEecCCchh-H-HHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC--CCcEEEEeCCCCCCCCCCCCH
Confidence            3578875 44433331 1 1222335765 443332 22234567777777765421  2455555444445  999999


Q ss_pred             HHHH----HHHhCCcEEEecccccCcCCccCCC---------CCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          272 HWIS----EAHRNSWHVLLDATALVVGEDRLNL---------ALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       272 ~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDL---------s~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      +.+.    .+++++++++.|-+-.-......+-         +...-=+++.|+=|. |+.|. .+|++.+..+..+
T Consensus       210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G~RvG~~~~~~~~~~  285 (420)
T 4h51_A          210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKN-MGLYSERAGTLSLLLKDKT  285 (420)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccc-cccccCceEEEEecccCHH
Confidence            6443    2478999999987643102221110         111234677799998 77652 3999988765443

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=95.18  E-value=0.24  Score=49.37  Aligned_cols=171  Identities=9%  Similarity=0.034  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHh---hCCCCCCCeEEEc-CCcC--HHHHHHHHH-----cC-----C
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGE---SYPFFRGNFYMTI-IGEE--LDYVREFAS-----FK-----E  222 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~---sl~~~~Gd~ivS~-~eH~--~~~ir~la~-----~~-----G  222 (344)
                      .+.-+++++++..+. -..|.|+.++|||+...+.   .+.  ....+++. -.+|  ......+..     +.     .
T Consensus       110 ~~lae~L~~~~p~~~-~~~v~f~~sGsEA~e~AlklAr~~t--~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~  186 (456)
T 4atq_A          110 VAVTEQLNRLTPGDH-AKRTVLFNSGAEAVENAVKVARLAT--GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFA  186 (456)
T ss_dssp             HHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC
T ss_pred             HHHHHHHHHhCCCCC-CcEEEEeCChHHHHHHHHHHHhhhh--cCCeEEEEecccCCccccccccccCccccccCCCCcc
Confidence            344456777775432 2269999999999776543   332  23345543 2344  221111100     00     1


Q ss_pred             cEEEEEeCCCC----CCcc-CHHHHHHHh---hhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEec
Q 035915          223 SKVILAPEAWL----DLRI-KGSQLSQYF---RRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       223 ~kV~~vp~~~~----~g~i-~~~~L~~~l---~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvD  287 (344)
                      ..+..+|....    .... +.+.+.+.+   .......+..-|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|
T Consensus       187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D  266 (456)
T 4atq_A          187 PEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD  266 (456)
T ss_dssp             SSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             ccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec
Confidence            23455554311    0111 122222222   11111113433443 45555 88776    345544 58999999999


Q ss_pred             ccccCcCCcc----CCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          288 ATALVVGEDR----LNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       288 AaQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      =+|.-.|..-    .+.-...||+++++  |. +|+=--+|+++++++..+.
T Consensus       267 EV~tG~GRtG~~~a~e~~gv~PDivt~g--K~-lggg~P~~av~~~~~i~~~  315 (456)
T 4atq_A          267 EVQSGFCRTGEWFAVDHEGVVPDIITMA--KG-IAGGLPLSAITGRADLLDA  315 (456)
T ss_dssp             CTTTTTTTTSSSSGGGGTTCCCSEEEEC--GG-GGTTSSCEEEEEEHHHHTT
T ss_pred             ccccccCCccccccccccCCCCchhhhh--hc-ccCcCCceeeEecHHHHhc
Confidence            9998323221    11113469999998  65 3332238999999877655

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=91.06  E-value=2.2  Score=45.73  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             HHHHHHhhhc---CCCCCeeEEEEeCc-c-c-ccccc----HHHHHH-HHhCCcEEEecccccCcCCccCCCC----CCC
Q 035915          240 SQLSQYFRRK---CKHTPKGLFSYPAD-I-N-GTRYS----MHWISE-AHRNSWHVLLDATALVVGEDRLNLA----LHR  304 (344)
Q Consensus       240 ~~L~~~l~~~---~~~~~t~LVa~~av-S-N-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs----~l~  304 (344)
                      +.|++.+...   ....++..|.+--+ . . |.+.|    ++.+.+ |+++|+++++|=+|.-.|..---+.    ...
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~  656 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK  656 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence            4566666421   01123555665443 3 3 77765    555544 6899999999987772143211111    356


Q ss_pred             CcEEEEccccCCCCC---CCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQ---PSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~---P~GiG~L~Vr~~~~~  334 (344)
                      ||+++++  |. +|+   |  +|++++++++.+
T Consensus       657 PDiitls--K~-L~gG~~P--lgav~~~~~i~~  684 (831)
T 4a0g_A          657 PDIACFA--KL-LTGGMVP--LAVTLATDAVFD  684 (831)
T ss_dssp             CSEEEEC--GG-GGTTSSC--CEEEEECHHHHH
T ss_pred             CcEEEEe--cc-cccCccC--cEEEEECHHHHH
Confidence            9998765  87 543   4  699999887554

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=90.75  E-value=3.8  Score=40.91  Aligned_cols=77  Identities=13%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             eeEEEEe-Cccc-cccccH----HHHHH-HHhCCcEEEecccccCcCCccCCC----CCCCCcEEEEccccCCCCC--CC
Q 035915          255 KGLFSYP-ADIN-GTRYSM----HWISE-AHRNSWHVLLDATALVVGEDRLNL----ALHRPDFVLCNLDNTQNAQ--PS  321 (344)
Q Consensus       255 t~LVa~~-avSN-G~i~Pl----~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL----s~l~~DFvv~S~HK~l~G~--P~  321 (344)
                      ...|.+. .+.+ |.+.|-    +.+.+ |+++|+++++|=+|.-.|..---+    -...||+++++  |.|-||  | 
T Consensus       237 iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~P-  313 (473)
T 4e3q_A          237 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFP-  313 (473)
T ss_dssp             EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSC-
T ss_pred             eEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCC-
Confidence            4445544 4445 887763    44543 589999999999998324321111    23569999886  652232  5 


Q ss_pred             ceEEEEEeCCCccc
Q 035915          322 KITCLLIRKKSFDT  335 (344)
Q Consensus       322 GiG~L~Vr~~~~~~  335 (344)
                       +|++++++++.+.
T Consensus       314 -l~av~~~~~i~~~  326 (473)
T 4e3q_A          314 -MGAVILGPELSKR  326 (473)
T ss_dssp             -CEEEEECHHHHHH
T ss_pred             -cccccccHHHHHH
Confidence             8999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.98
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.97
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.97
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.96
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.93
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.93
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.92
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.91
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.9
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.89
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.87
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.79
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.76
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.73
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.63
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.61
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.55
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.54
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.51
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.4
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.34
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.08
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.08
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.05
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.03
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.03
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.97
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.95
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.86
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	98.85
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	98.85
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	98.83
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.8
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.79
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	98.79
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	98.79
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.78
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.75
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	98.75
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	98.73
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.69
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.69
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	98.68
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	98.64
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.63
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.61
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.6
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	98.58
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	98.57
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.57
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.56
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	98.44
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	98.41
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	98.33
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.3
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	98.3
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.28
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	98.28
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.25
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	98.25
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.21
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.19
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	98.15
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	98.11
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.1
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.06
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	97.96
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	97.62
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	97.6
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	96.92
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	96.74
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	96.58
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	96.51
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	96.47
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	96.41
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	95.89
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	95.75
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	95.67
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	95.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	94.98
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	93.84
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	93.32
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	92.25

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-35  Score=287.73  Aligned_cols=201  Identities=14%  Similarity=0.107  Sum_probs=165.8

Q ss_pred             CCCCCcccccchHHHHHHhhccCC----CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---CC
Q 035915          124 SNLPDLDRTQLEPSRLLDILTKKS----SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---YP  196 (344)
Q Consensus       124 a~lp~~s~v~~~~~~L~~~L~gns----s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l~  196 (344)
                      .++++.+.+.+..+.+++ .++|+    +..+..+.+.++++|+.||++||+.+.+ +|+||+|+|+|+|+++.+   ..
T Consensus        31 ~~~~p~~v~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~-~i~~~~~~T~~~~~~~~~~~~~~  108 (405)
T d1jf9a_          31 SAQKPSQVIDAEAEFYRH-GYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE-ELVFVRGTTEGINLVANSWGNSN  108 (405)
T ss_dssp             CCCCCHHHHHHHHHHHHH-TCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcc-cccccCcHHHHHHHHHhcccccc
Confidence            343333334443444444 56662    2356667778999999999999976432 799999999999999887   45


Q ss_pred             CCCCCeE-EEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccH
Q 035915          197 FFRGNFY-MTIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSM  271 (344)
Q Consensus       197 ~~~Gd~i-vS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl  271 (344)
                      +.+|+++ ++..||+  ...|+.++++.|++|+++|++. ++.++.+.++.++++     +|+||++++++|  |.++|+
T Consensus       109 ~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~-~g~~~~~~~~~~i~~-----~t~lv~~~~v~~~tG~~~pi  182 (405)
T d1jf9a_         109 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGTLQLETLPTLFDE-----KTRLLAITHVSNVLGTENPL  182 (405)
T ss_dssp             CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSCBCGGGHHHHCCT-----TEEEEEEESBCTTTCCBCCH
T ss_pred             cCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC-CCcCCHHHHHHhccC-----CcEEEEEecCCCcccccCch
Confidence            7889985 6899998  4589999998999999999986 588999999888875     589999999996  999999


Q ss_pred             HHHH-HHHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          272 HWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       272 ~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|. .+|++|++++|||+|++ |+.++|++++++||+++|+||| +| |.|+|+||++++.++.
T Consensus       183 ~~i~~~~~~~g~~~~vD~~q~~-g~~~id~~~~~~D~~~~s~hK~-~G-p~G~g~l~v~~~~~~~  244 (405)
T d1jf9a_         183 AEMITLAHQHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKL-YG-PTGIGILYVKEALLQE  244 (405)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTT-TTSCCCHHHHTCSEEEEEGGGT-TS-CSSCEEEEECHHHHTT
T ss_pred             HHhhhHHHHcCCeeecccceec-cccccchhhcCCceeecccccc-cc-CCCceeeeechhhhcc
Confidence            8776 47999999999999999 9999999999999999999999 87 9999999999876543

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.98  E-value=3.8e-32  Score=264.42  Aligned_cols=194  Identities=16%  Similarity=0.104  Sum_probs=161.8

Q ss_pred             ccccchHHHHHHhhccCC----CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---CCCCCCe
Q 035915          130 DRTQLEPSRLLDILTKKS----SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---PFFRGNF  202 (344)
Q Consensus       130 s~v~~~~~~L~~~L~gns----s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~~~~Gd~  202 (344)
                      +.++...+.+.+ .++|.    +..|..+...++++|+.+|++||+++++ .|+||+|+|+++|+++.++   .+++|++
T Consensus        37 ~v~~~~~~~~~~-~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~-~i~~~~~tt~~~n~~~~~~~~~~~~~g~~  114 (408)
T d1t3ia_          37 AVLEKLMHYYEN-DNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR-EIVYTRNATEAINLVAYSWGMNNLKAGDE  114 (408)
T ss_dssp             HHHHHHHHHHHH-TCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGG-GEEEESSHHHHHHHHHHHTHHHHCCTTCE
T ss_pred             HHHHHHHHHHHh-cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcc-cEEeecchHHHHHHHHhhccccccCCCCE
Confidence            334444444444 45662    2456677788999999999999997544 7999999999999998873   5778998


Q ss_pred             E-EEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-
Q 035915          203 Y-MTIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-  276 (344)
Q Consensus       203 i-vS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-  276 (344)
                      | ++..||+  ...|+.++++.|++++++|.+. ++.++.+.|.+++++     +|+||++++++|  |.++|+++|.+ 
T Consensus       115 il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~l~~~~~~-----~t~lv~i~~~~~~tG~~~p~~~i~~~  188 (408)
T d1t3ia_         115 IITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QESFDLEHFKTLLSE-----KTKLVTVVHISNTLGCVNPAEEIAQL  188 (408)
T ss_dssp             EEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TSSBCHHHHHHHCCT-----TEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred             EEeecccchhhhhhhhhhhhccCceEeeeeccc-cccccHHHhhhccCC-----CceEEEEecccccccccCcHHHHhhh
Confidence            5 5788888  4578888888899999999876 467889999988865     589999999985  99999988865 


Q ss_pred             HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +|++|++++|||+|++ |+.++|++++++||+++|+||| +| |.|+|+||++++...
T Consensus       189 ~~~~g~~~ivDa~q~~-g~~~id~~~~~~D~~~~s~hK~-~g-p~G~g~l~v~~~~~~  243 (408)
T d1t3ia_         189 AHQAGAKVLVDACQSA-PHYPLDVQLIDCDWLVASGHKM-CA-PTGIGFLYGKEEILE  243 (408)
T ss_dssp             HHHTTCEEEEECTTTT-TTSCCCHHHHTCSEEEEEGGGT-TS-CTTCEEEEECHHHHH
T ss_pred             hhccCceeeeccceec-ccccccccccCCceEEeccccc-cC-CCCccccccchhhhh
Confidence            6999999999999999 9999999999999999999999 77 999999999987643

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=3.4e-30  Score=245.11  Aligned_cols=199  Identities=19%  Similarity=0.104  Sum_probs=160.4

Q ss_pred             CCCCCCcccccchHHHHHHhhccCCC---ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC---C
Q 035915          123 GSNLPDLDRTQLEPSRLLDILTKKSS---FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY---P  196 (344)
Q Consensus       123 Ga~lp~~s~v~~~~~~L~~~L~gnss---~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl---~  196 (344)
                      |.++|+. .|.+...+.....++|++   ..+..+...++++|+++|++|||+++  +|+||+|+|+|+++++.++   .
T Consensus         9 ~~~~~p~-~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~--~i~~~~~~T~~l~~~~~~~~~~~   85 (376)
T d1eg5a_           9 ATTRVDD-RVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILKTVAETF   85 (376)
T ss_dssp             TCCCCCH-HHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccccCCH-HHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHhhhhcccccc
Confidence            3443433 344444444445677743   35666777889999999999999987  7999999999999998753   4


Q ss_pred             CCCCCeEEEcCCcC--HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH
Q 035915          197 FFRGNFYMTIIGEE--LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH  272 (344)
Q Consensus       197 ~~~Gd~ivS~~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~  272 (344)
                      +.+|+.+++..+|+  ...+...++++|++|+++|++. ++.++.+++.+++++     +|+||++++++|  |.++|++
T Consensus        86 ~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~-~~~id~~~l~~~i~~-----~t~lv~is~v~~~tG~~~~~~  159 (376)
T d1eg5a_          86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGVVKLEELEKLVDE-----DTFLVSIMAANNEVGTIQPVE  159 (376)
T ss_dssp             TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSCBCHHHHHHHCCT-----TEEEEEEESBCTTTCBBCCHH
T ss_pred             cccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC-CCeECHHHHHHhcCC-----CceEEEEECCccccceeeeeh
Confidence            56788887766666  2233344566799999999986 589999999999976     589999999986  9999998


Q ss_pred             HHHHH---HhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          273 WISEA---HRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       273 ~Ia~a---r~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++.++   +..+++++||++|++ |+.++|+.++++||+++|+||| +| |.|.|+||++++..
T Consensus       160 ~i~~~~~~~~~~~~~~vD~~q~~-g~~~~d~~~~~~D~~~~s~~K~-~g-p~G~~~l~~~~~~~  220 (376)
T d1eg5a_         160 DVTRIVKKKNKETLVHVDAVQTI-GKIPFSLEKLEVDYASFSAHKF-HG-PKGVGITYIRKGVP  220 (376)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTT-TTSCCCCTTTCCSEEEEEGGGG-TS-CTTCEEEEECTTSC
T ss_pred             hhhhhhhhcccCceeEEEeeecc-ccccccccccCccceeccccee-ec-CCCceeEEeccCcc
Confidence            88653   557999999999999 9999999999999999999999 87 99999999988753

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.97  E-value=4.1e-30  Score=244.52  Aligned_cols=196  Identities=15%  Similarity=0.094  Sum_probs=154.3

Q ss_pred             cccchHHHHHHhhccC-C-CC-hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEc
Q 035915          131 RTQLEPSRLLDILTKK-S-SF-PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTI  206 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gn-s-s~-~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~  206 (344)
                      .|.++..+..+.+..+ + .+ .+......++++|+.+|+++|++++  +|+||+|+|+|+++++.++.+++|+++ ++.
T Consensus        22 ~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~   99 (381)
T d1elua_          22 VALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTD   99 (381)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG--GEEEESSHHHHHHHHHHHSCCCTTCEEEEET
T ss_pred             HHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc--cEEEECChHHHhhhcchhhhhcCCceEEEec
Confidence            3444444443334433 2 22 3444556789999999999999877  699999999999999999999999995 577


Q ss_pred             CCcC--HHHHHHHHHcCCcEEEEEeCCCCCCcc-CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh-
Q 035915          207 IGEE--LDYVREFASFKESKVILAPEAWLDLRI-KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR-  279 (344)
Q Consensus       207 ~eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i-~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~-  279 (344)
                      .+|+  ...|+.++++.|+++..+|.+...... ..+.+++.+++     +|+++++++++|  |.++|+++|.+ ||+ 
T Consensus       100 ~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~-----~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~  174 (381)
T d1elua_         100 CEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-----KTRLVILSHLLWNTGQVLPLAEIMAVCRRH  174 (381)
T ss_dssp             TCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-----TEEEEEEESBCTTTCCBCCHHHHHHHHHHC
T ss_pred             cccceeeeccccccccccccccccccccccccchHHHHHHhhhcc-----cccccccccccccccccchhhHHHHHHhhc
Confidence            8887  346778888889999999875421111 13445555443     689999999886  99999988865 565 


Q ss_pred             ---CCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          280 ---NSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       280 ---~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                         .++.+++|++|++ |+.++|++++++||+++|+||| +++|.|+|+||++++..+.
T Consensus       175 ~~~~~~~~~vD~~~~~-g~~~~~~~~~~~D~~~~s~~K~-~~~p~G~g~l~~~~~~~~~  231 (381)
T d1elua_         175 QGNYPVRVLVDGAQSA-GSLPLDFSRLEVDYYAFTGHKW-FAGPAGVGGLYIHGDCLGE  231 (381)
T ss_dssp             CSSSCCEEEEECTTTB-TTBCCCTTTSCCSEEEEESSST-TCCCTTCEEEEECTTTGGG
T ss_pred             cccccccccccccccc-cccccccccccccccccccccc-ccccchhhHHHhhHHHHHh
Confidence               4799999999999 9999999999999999999999 8889999999999987764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.2e-29  Score=241.08  Aligned_cols=174  Identities=19%  Similarity=0.134  Sum_probs=150.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC---CCCCCeEE-EcCCcCH--HHHHHHHHcCCc
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP---FFRGNFYM-TIIGEEL--DYVREFASFKES  223 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~---~~~Gd~iv-S~~eH~~--~~ir~la~~~G~  223 (344)
                      .+..++..++++|+++|+++|++++  +|+||+|+|++++.++.++.   +++|++|+ +..+|+.  ..++. ++..|+
T Consensus        42 ~~~~~~~~~~~~R~~iA~~lg~~~~--~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~-~~~~G~  118 (391)
T d1p3wa_          42 FGWQAEEAVDIARNQIADLVGADPR--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGF  118 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHH-HHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHH-HHHcCC
Confidence            4667778899999999999999987  79999999999999988753   57899965 6677763  24444 456799


Q ss_pred             EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCC
Q 035915          224 KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNL  300 (344)
Q Consensus       224 kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDL  300 (344)
                      +|+++|.+. ++.++.+++++++++     +|++|++++++|  |.++|+++|.+ +|++|+++++|++|++ |+.++|+
T Consensus       119 ~v~~v~~~~-~~~~d~~~~~~~i~~-----~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~-g~~~~d~  191 (391)
T d1p3wa_         119 EVTYLAPQR-NGIIDLKELEAAMRD-----DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSV-GKLPIDL  191 (391)
T ss_dssp             EEEEECCCT-TSCCCHHHHHHHCCT-----TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTB-TTBCCCT
T ss_pred             EEEEeCCCC-CCeEcHHHHHHhCCC-----CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeecccc-CCccccc
Confidence            999999886 578999999999976     589999999987  99999988865 6999999999999999 9999999


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ..+++||+++|+||| +| |.|+|++|++++....
T Consensus       192 ~~~~~D~~~~s~~k~-~g-~~g~g~~~~~~~~~~~  224 (391)
T d1p3wa_         192 SQLKVDLMSFSGHKI-YG-PKGIGALYVRRKPRVR  224 (391)
T ss_dssp             TTSCCSEEEEESTTT-TS-CSSCEEEEECBTTBCC
T ss_pred             hhccccccccccccc-cC-CCceEEEEEecchhcc
Confidence            999999999999999 87 8899999999987654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=1e-25  Score=211.25  Aligned_cols=177  Identities=12%  Similarity=0.016  Sum_probs=131.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      +......++++|+++++++|+++++..|+||+|+|+++++++.++.+..+..+++..++....+...+...+.++..+..
T Consensus        28 ~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (361)
T d1m32a_          28 DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDC  107 (361)
T ss_dssp             HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccc
Confidence            33445578999999999999987644588999999999999999987666666655554422122222223444444333


Q ss_pred             CCCCCccCH--HHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          231 AWLDLRIKG--SQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       231 ~~~~g~i~~--~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      ... .....  +.+.....     .+++++++++++|  |.++|++.|.. +|++|++++|||+|++ |+.++|+.++++
T Consensus       108 ~~~-~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~-G~~~~d~~~~~~  180 (361)
T d1m32a_         108 GEV-ARPDVQAIDAILNAD-----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSF-GGIPMDIAALHI  180 (361)
T ss_dssp             CTT-SCCCHHHHHHHHHHC-----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT-TTSCCCTTTTTC
T ss_pred             ccc-CCccchhhHHHHHhc-----cCccceEEEeeecccccchhhhhhhhhhcccceeeEeeccccc-Cccccccccccc
Confidence            321 22222  22222222     2589999999986  99999988864 7999999999999999 999999999999


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ||+++|+||| +++|.|+|+||+|++..+.
T Consensus       181 D~~~~s~~K~-l~gp~G~g~l~~~~~~~~~  209 (361)
T d1m32a_         181 DYLISSANKC-IQGVPGFAFVIAREQKLAA  209 (361)
T ss_dssp             SEEEEESSST-TCCCSSEEEEEEEHHHHTT
T ss_pred             ceEEeeeccc-ccCCCCceEEEechhhhhh
Confidence            9999999999 7779999999999876654

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.93  E-value=7.7e-27  Score=222.61  Aligned_cols=191  Identities=12%  Similarity=0.037  Sum_probs=139.0

Q ss_pred             cccchHHHHHHhhccCCCC---hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhC-----CCCCCCe
Q 035915          131 RTQLEPSRLLDILTKKSSF---PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESY-----PFFRGNF  202 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~---~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl-----~~~~Gd~  202 (344)
                      .|.+...+.....++|...   .+......++++|+++|+++||+++  +|+||+|+|+++|+++.+.     .+.+++.
T Consensus        42 ~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~--ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~  119 (404)
T d1qz9a_          42 AALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERR  119 (404)
T ss_dssp             THHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCC--cEEEecCchHHHHHHhhhhhhhhcccCCCcE
Confidence            4444444433333445322   2223345779999999999999988  6999999999999876543     2345665


Q ss_pred             -EEEcCCcCHH--HH-HHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH
Q 035915          203 -YMTIIGEELD--YV-REFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE  276 (344)
Q Consensus       203 -ivS~~eH~~~--~i-r~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~  276 (344)
                       +++..+|+.+  .+ +..++     +..++.+. ++.++.+++.+++++     +|+||++++++|  |+++|+++|.+
T Consensus       120 vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~i~~-----~T~lV~i~~v~~~tG~~~pv~~i~~  188 (404)
T d1qz9a_         120 VIVTETSNFPTDLYIAEGLAD-----MLQQGYTL-RLVDSPEELPQAIDQ-----DTAVVMLTHVNYKTGYMHDMQALTA  188 (404)
T ss_dssp             EEEEETTSCHHHHHHHHHHHH-----HHCSSCEE-EEESSGGGHHHHCST-----TEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred             EEEeccccchHHHHHHhhhhe-----eeeeceec-cccccchhHHHhcCC-----CceEEEEecccccccceecHHHHhc
Confidence             5677777633  22 22222     22222222 244566778888876     589999999996  99999988875


Q ss_pred             -HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          277 -AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       277 -ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                       +|++|+.++||++|++ |+.++|+.++++||+++|+|||++++|.|+|++|+++..++.
T Consensus       189 ~~~~~~~~~~vD~~q~~-g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~  247 (404)
T d1qz9a_         189 LSHECGALAIWDLAHSA-GAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL  247 (404)
T ss_dssp             HHHHHTCEEEEECTTTT-TTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTT
T ss_pred             cccccccceeEEeeccc-cccccccccccceEEEEechhhcccCCceEEEEEechhhhhh
Confidence             7999999999999999 999999999999999999999944556568999999877654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.4e-25  Score=208.07  Aligned_cols=177  Identities=10%  Similarity=0.011  Sum_probs=142.2

Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEE
Q 035915          149 FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       149 ~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+....+.++++|+.++++||++ ++|.|+||+|+|++++.++.++ +.+|+.+ +...+|..+.+.+.+...+..+..
T Consensus        45 HRs~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (388)
T d1h0ca_          45 SMSKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNV-LEPGDSFLVGANGIWGQRAVDIGERIGARVHP  122 (388)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHH-CCSSCCEEECBSSHHHHHHHHHHHHHC--CBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHh-hccCCceeeecccceeeeeccccccccccccc
Confidence            345566778899999999999996 4568999999999999999988 4567775 455565555454545555666666


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++.++. +.++.+++.+.+...    +++++++++++|  |+++|++.|.+ +|++|++++|||+|++ |+.++|+.+++
T Consensus       123 ~~~~~~-~~~~~~~~~~~~~~~----~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~-g~~~~d~~~~~  196 (388)
T d1h0ca_         123 MTKDPG-GHYTLQEVEEGLAQH----KPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASL-GGTPLYMDRQG  196 (388)
T ss_dssp             CBCCTT-CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTT-TTSCCCTTTTT
T ss_pred             cccCCc-cccchHHHHHHhccC----CcceEEEeeeeeccccccCHHHHHHHhhcccccceecccccc-ccccccccccc
Confidence            666653 567777777766542    478999999986  99999987765 6999999999999999 99999999999


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +||+++|+||| +++|.|+|++|+++...+
T Consensus       197 ~D~~~~s~~K~-~~gp~g~~~~~~~~~~~~  225 (388)
T d1h0ca_         197 IDILYSGSQKA-LNAPPGTSLISFSDKAKK  225 (388)
T ss_dssp             CSEEEEESSST-TCCCTTCEEEEECHHHHH
T ss_pred             cceeccccccc-ccCCCceEEEeecHHHHH
Confidence            99999999999 888999999999876543

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.3e-24  Score=202.71  Aligned_cols=177  Identities=8%  Similarity=0.022  Sum_probs=135.6

Q ss_pred             hhhHHHHHHHHHHHHHcCCC-C-CCCeEEEeCCHHHHHHHHHhhC--CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          153 FISIPEIQARNKVLKHCGLP-D-DEYLVLFTPNYRDAMMLVGESY--PFFRGNFYM-TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~-p-~ey~VVFTsnaTeAlnlva~sl--~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      .....++++++.+.+++++. + +...|+||+|+|+|+|+++.++  ++++|++++ ...+|..+.+...+++.|..+..
T Consensus        33 ~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~  112 (382)
T d2bkwa1          33 EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDV  112 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccc
Confidence            33445567777777777641 1 2237999999999999999987  567899865 45555555555556667888777


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-H--HhCCcEEEecccccCcCCccCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-A--HRNSWHVLLDATALVVGEDRLNLAL  302 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-a--r~~g~~vlvDAaQa~~G~~~LDLs~  302 (344)
                      +...+.+...+.+.+++.+...    +++++++++++|  |+++|++.+.+ +  +..+++++|||+|++ |+.|+|+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~-g~~pid~~~  187 (382)
T d2bkwa1         113 VRPLKIGESVPLELITEKLSQN----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSI-GCEEFEFDE  187 (382)
T ss_dssp             ECCSSTTSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTT-TTSCCCTTT
T ss_pred             ccccCCCCccchhHHHHHhhhc----cchheeeeeccccccccccchhhhhhccccccceeeeeeccccc-ccccccccc
Confidence            6543334456777777776542    478999998874  99999987764 3  456799999999999 999999999


Q ss_pred             CCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          303 HRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++||+++|+||| +++|.|+|++|+++++++.
T Consensus       188 ~giD~~~~s~~K~-l~gP~G~g~l~vs~~~~~~  219 (382)
T d2bkwa1         188 WGVDFALTASQKA-IGAPAGLSISLCSSRFMDY  219 (382)
T ss_dssp             TTCSEEEEESSST-TCCCSCEEEEEECHHHHHH
T ss_pred             cCeeEEeeccccc-CcCCCchhhhhccHHHHhh
Confidence            9999999999999 8779999999999887654

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.90  E-value=2.7e-23  Score=194.06  Aligned_cols=170  Identities=15%  Similarity=0.098  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC-CC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW-LD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~-~~  234 (344)
                      ..+..|+++|+++|++    +++||+|+|+|+++++.++ .++||+|+ ...+|....  ..++..|+++..+|.+. .+
T Consensus        48 l~~~~~~~~A~~~g~e----~~~~t~g~t~a~~~~~~al-~~~gd~Vi~~~~~h~s~~--~~~~~~g~~v~~v~~~~~~~  120 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSL-AKKDAWVVMDENCHYSSY--VAAERAGLNIALVPKTDYPD  120 (364)
T ss_dssp             HHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHH--HHHHHTTCEEEEECCCCTTT
T ss_pred             HHHHHHHHHHHHhCcC----EEEEECcHHHHHHHHHHHH-hCCCcEEEeecccccccc--hHHHhccceEEEeeeccccc
Confidence            4577899999999983    5999999999999999988 57899965 666666432  22445799999999753 35


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                      +.++.++|++.+++.++..++.||++++.+|  |.++|++.|.+ |+++|+++++|++|++ |+.++++.++++||+++|
T Consensus       121 ~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~-g~~~~~~~~~g~D~~~~S  199 (364)
T d2e7ja1         121 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAI-GRMPVSLKEIGADFIVGS  199 (364)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTB-TTBCCCHHHHTCSEEEEE
T ss_pred             cccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchh-hhhhhcccccccceeeec
Confidence            6789999999998766556678999998876  99999987765 6999999999999999 999999999999999999


Q ss_pred             cccCCCCCCCceEEEEEeCCCccc
Q 035915          312 LDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       312 ~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +||+ ||+|.|+|+|+++++..+.
T Consensus       200 ~~K~-~~~~g~~g~l~~~~~~~~~  222 (364)
T d2e7ja1         200 GHKS-MAASGPIGVMGMKEEWAEI  222 (364)
T ss_dssp             HHHH-SSCCSSCEEEEECTTTTTT
T ss_pred             cccc-cCCCCCEEEEEECHHHHHH
Confidence            9999 8878789999999876654

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.89  E-value=2.8e-22  Score=189.72  Aligned_cols=177  Identities=11%  Similarity=0.014  Sum_probs=138.5

Q ss_pred             ChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEE
Q 035915          149 FPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVIL  227 (344)
Q Consensus       149 ~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~  227 (344)
                      ..+....+.++++|+.++++||+++ .+.|+||+|+|++++.++.++. .+|+.++ ...+|....+...+++.+..+..
T Consensus        43 hr~~ef~~i~~~~r~~L~~ll~~~~-~~~i~~~gsgT~a~ea~~~~l~-~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~  120 (388)
T d2ch1a1          43 NFHAELFRTMDEVKDGLRYIFQTEN-RATMCVSGSAHAGMEAMLSNLL-EEGDRVLIAVNGIWAERAVEMSERYGADVRT  120 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHHHHHHHHHHhc-cccccccccccccccccchhhhhhhcccccc
Confidence            3456777788999999999999963 3367778899999999999984 4677754 44444444444445566777777


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHR  304 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~  304 (344)
                      ++..+. ...+.+++.......    +++++++++++|  |+++|++.|.. +|++|++++||++|++ |+.++|+++++
T Consensus       121 ~~~~~~-~~~~~~~~~~~~~~~----~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~-g~~pid~~~~~  194 (388)
T d2ch1a1         121 IEGPPD-RPFSLETLARAIELH----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASL-CGVPFYMDKWE  194 (388)
T ss_dssp             EECCTT-SCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTB-TTBCCCTTTTT
T ss_pred             cccccc-cccchhhhhhhhccC----Ccceeeeeecccccccccchhhhcchhccccceeeeeeeecc-cccccchhccC
Confidence            776653 345666666555432    478999999885  99999987764 6999999999999999 99999999999


Q ss_pred             CcEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          305 PDFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      +||+++|.||| +++|.|+|+++++++..+
T Consensus       195 ~d~~~~s~~K~-~~gp~G~g~~~~~~~~~~  223 (388)
T d2ch1a1         195 IDAVYTGAQKV-LGAPPGITPISISPKALD  223 (388)
T ss_dssp             CCEEECCCC-C-CCCCSSCEEEEECHHHHH
T ss_pred             ceEEEEccccc-cCCCCeEEEEeccHHHHH
Confidence            99999999999 888999999999976554

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.87  E-value=7.7e-22  Score=185.31  Aligned_cols=176  Identities=9%  Similarity=0.025  Sum_probs=138.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      .+....+.++++|+.++++||++ ++|.|+||+|+|++++.++.++. .+|+. ++...+|..+.+...+...+..+..+
T Consensus        45 r~~ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (377)
T d1vjoa_          45 LDPAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAV-EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTI  122 (377)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHhcc-ccccccceeeechhhhhhhhhhhhhccccccc
Confidence            45667778899999999999996 45689999999999999998874 56776 45666666555555566666666666


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH-HHHhCCcEEEecccccCcCCccCCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS-EAHRNSWHVLLDATALVVGEDRLNLALHRP  305 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia-~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~  305 (344)
                      ..... .....+.........    .+.+|++++++|  |+++|++.|. .+|++|++++|||+|++ |+.++|++.+++
T Consensus       123 ~~~~~-~~~~~~~~~~~~~~~----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~-g~~~~~~~~~~~  196 (377)
T d1vjoa_         123 SKPWG-EVFSLEELRTALETH----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSL-GGVPIFLDAWGV  196 (377)
T ss_dssp             ECCTT-CCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTT-TTSCCCTTTTTC
T ss_pred             ccCCC-CcccchhhhhhhhcC----cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhh-hhhhhccccccc
Confidence            55443 334455444444332    478999998885  9999998775 46999999999999999 999999999999


Q ss_pred             cEEEEccccCCCCCCCceEEEEEeCCCcc
Q 035915          306 DFVLCNLDNTQNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       306 DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~  334 (344)
                      ||+++++||| +++|.|+|+++++++.++
T Consensus       197 d~~~~s~~K~-~~gp~g~~~~~~~~~~~~  224 (377)
T d1vjoa_         197 DLAYSCSQKG-LGCSPGASPFTMSSRAIE  224 (377)
T ss_dssp             SEEECCSSST-TCSCSSCEEEEECHHHHH
T ss_pred             ceeeeccccc-ccCCCEEEEecchhhHHh
Confidence            9999999999 777999999999886554

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.6e-18  Score=165.78  Aligned_cols=172  Identities=10%  Similarity=0.011  Sum_probs=134.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      .+......++++|+.+.++||++.+  .++||+|+|+|++.++.++ +.+|+.+ +...++-..-+...+++.|..+..+
T Consensus        27 r~~~f~~i~~~~~~~l~~ll~~~~~--~i~~~gsgT~a~e~~~~nl-~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~  103 (348)
T d1iuga_          27 RTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKNL-FAPGERVLVPVYGKFSERFYEIALEAGLVVERL  103 (348)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHHH-CCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCC--EEEEeCchHHHHHHHHHhc-ccccccceeecchHHHHHHHHHHHhcCcccccc
Confidence            3456667889999999999998654  7899999999999998886 4678874 4455533334556677788888888


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCcCCccCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGEDRLNLALH  303 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~~~LDLs~l  303 (344)
                      ...+.. .++.+++    .    ..++++|+++|..|  |+++|++.|.. +|+  .+.++++||+|++ |..++|++.+
T Consensus       104 ~~~~g~-~~~~~~~----~----~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~-g~~~i~~d~~  173 (348)
T d1iuga_         104 DYPYGD-TPRPEDV----A----KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSL-LVGEVALEAM  173 (348)
T ss_dssp             ECCTTC-CCCTTTS----C----CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTB-TTBCCCSGGG
T ss_pred             cccCCC-ccccccc----c----ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcc-cccccccccc
Confidence            776632 2333221    1    13467888888864  99999988865 455  4688999999999 9999999999


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      ++|++++++||+ +++|.|+|++++++++++.
T Consensus       174 ~iD~~~~~sqK~-l~gppG~~~v~~s~~~le~  204 (348)
T d1iuga_         174 GVDAAASGSQKG-LMCPPGLGFVALSPRALER  204 (348)
T ss_dssp             TCSEEEEESSST-TCCCSCEEEEEECHHHHHT
T ss_pred             cCCEEEeccccc-eecCCceeeeeechHHHhh
Confidence            999999999999 7669999999999887655

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.7e-18  Score=168.90  Aligned_cols=188  Identities=11%  Similarity=-0.013  Sum_probs=138.9

Q ss_pred             hHHHHHHhhccCC----CChhhhhhHHHHHHHHHHHHHcCCCCCC---CeEEEeCCHHHHHHHHHhhCCC----------
Q 035915          135 EPSRLLDILTKKS----SFPGSFISIPEIQARNKVLKHCGLPDDE---YLVLFTPNYRDAMMLVGESYPF----------  197 (344)
Q Consensus       135 ~~~~L~~~L~gns----s~~g~~as~~le~AR~~IA~~Lga~p~e---y~VVFTsnaTeAlnlva~sl~~----------  197 (344)
                      +.+.+.+.+..|.    .||  .+++...++.+.+|+++|++..+   ..=+||+|+|||+++.+.+..+          
T Consensus        70 ~~~l~~~~~~~N~~~~~~~P--~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g  147 (450)
T d1pmma_          70 VHKLMDLSINKNWIDKEEYP--QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAG  147 (450)
T ss_dssp             HHHHHHHTTTCBTTCTTTSH--HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCcccCc--cHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcC
Confidence            3444555566662    234  34557789999999999996421   1258999999999876554321          


Q ss_pred             CCCC--eEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHH
Q 035915          198 FRGN--FYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHW  273 (344)
Q Consensus       198 ~~Gd--~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~  273 (344)
                      ..++  .+++... | -+|...|+..|++++.+|.+..++.++.++|++++++     .|.+|+.++.+|  |.+-|++.
T Consensus       148 ~~~~~~~~~~~~~-H-~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~-----~t~~Vv~t~gtt~tG~~dpv~~  220 (450)
T d1pmma_         148 KPTDKPNLVCGPV-Q-ICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE-----NTIGVVPTFGVTYTGNYEFPQP  220 (450)
T ss_dssp             CCCSCCEEEESSC-C-HHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT-----TEEEEECBBSCTTTCBBCCHHH
T ss_pred             CCCCCceEEeccc-H-HHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh-----CceEEEeeeeeccCCCccccch
Confidence            1112  2455443 3 2477788889999999999876789999999999876     478888888775  99999976


Q ss_pred             HHH-------HHhCCcEEEecccccCcCCccCCC-------CCCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          274 ISE-------AHRNSWHVLLDATALVVGEDRLNL-------ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       274 Ia~-------ar~~g~~vlvDAaQa~~G~~~LDL-------s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      |..       ++++|+++|||||++. +..+++.       ...++|++++|+||| ++.|.|+|+|++|+...
T Consensus       221 i~~i~~~~~~a~~~~i~lHVDAA~gG-~~~p~~~~~~~~~~~~~~aDSi~~s~HK~-~~~p~g~g~l~~r~~~~  292 (450)
T d1pmma_         221 LHDALDKFQADTGIDIDMHIDAASGG-FLAPFVAPDIVWDFRLPRVKSISASGHKF-GLAPLGCGWVIWRDEEA  292 (450)
T ss_dssp             HHHHHHHHHHHHCCCCCEEEECTTGG-GTHHHHCTTCCCSTTSTTEEEEEEETTTT-TCCCSSCEEEEESSGGG
T ss_pred             hhHHHHHHHHHhccCcEEEeehhhcc-ceeeeechhhhhhhcccceeEeecChhhc-cCCCCCeeEEEecChhh
Confidence            653       3568999999999987 6655443       334799999999999 77799999999997643

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.73  E-value=8.8e-19  Score=163.50  Aligned_cols=168  Identities=9%  Similarity=-0.044  Sum_probs=120.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC-HHHHHHHHHcCCcEEEEEe
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE-LDYVREFASFKESKVILAP  229 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~-~~~ir~la~~~G~kV~~vp  229 (344)
                      +......++++|+.|++|||++ ++|.|+|++|+|++++.++....+..++.++...+|+ ...+...+...+..+....
T Consensus        43 s~~~~~~~~~~r~~l~~l~~~~-~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1w23a_          43 SQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAS  121 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeec
Confidence            3445667899999999999996 5678999999999998877776666777776555554 4344455666676666654


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCc
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPD  306 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~D  306 (344)
                      ..+. .....+++...         .+.+.+++++|  |++.|++.|.. +|++|++++|||+|++ |+.++|++++++|
T Consensus       122 ~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~-g~~~id~~~~~vd  190 (360)
T d1w23a_         122 TKAN-SYQSIPDFSEF---------QLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDI-LSRPLKVNQFGMI  190 (360)
T ss_dssp             CGGG-TSCSCCCGGGC---------CCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTT-TSSCCCGGGCSEE
T ss_pred             cccc-cccchhhhhhc---------ccccccceeEecCCccccceeeeeccccceeeEEeeccccc-cccccccccccce
Confidence            4331 11222222221         22233444444  99999987765 6999999999999999 9999999999999


Q ss_pred             EEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          307 FVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       307 Fvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      |++++.||+ ++ | |.|+++.++...
T Consensus       191 ~~~~~~~k~-~~-~-~~~~~~~~~~~~  214 (360)
T d1w23a_         191 YAGAQKNLG-PS-G-VTVVIVKKDLLN  214 (360)
T ss_dssp             EEETTTTTS-CT-T-CEEEEEEHHHHC
T ss_pred             EEeeccccc-cC-C-cceeeEechhhh
Confidence            999999997 44 4 677777665443

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.1e-16  Score=147.56  Aligned_cols=173  Identities=7%  Similarity=-0.069  Sum_probs=123.5

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC-HHHHHHHHHcCCcEEEEEe
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE-LDYVREFASFKESKVILAP  229 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~-~~~ir~la~~~G~kV~~vp  229 (344)
                      +....+.++++|+.|+++||++ +++.|+||+|+|++++.++...-+.+++.++....|. ...|..++++.|..+....
T Consensus        41 s~ef~~l~~~~r~~l~~l~~~~-~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (360)
T d1bjna_          41 GKEFIQVAEEAEKDFRDLLNVP-SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDA  119 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeec
Confidence            4455667899999999999996 4568999999999988776654444555554433333 4456677777787776655


Q ss_pred             CCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          230 EAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       230 ~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      ..+ ++..+.+++...+..     +++++++++++|  |+.+|+..+. ++.+++.+++|++|++ +..++|..  ++|+
T Consensus       120 ~~~-~~~~~~~~~~~~~~~-----~~~~v~v~~~~~~t~~~~~~~~i~-~~~~~~~v~vDa~~~~-~~~~vd~~--~~dv  189 (360)
T d1bjna_         120 KVT-VDGLRAVKPMREWQL-----SDNAAYMHYCPNETIDGIAIDETP-DFGADVVVAADFSSTI-LSRPIDVS--RYGV  189 (360)
T ss_dssp             EEE-ETTEEEECCGGGCCC-----CSSCSCEEECSEETTTTEECCCCC-CCCTTCCEEEECTTTT-TSSCCCGG--GCSE
T ss_pred             ccc-CCCcchhhhhhhhcc-----CCceeEEEecccccccCcccccee-cccccceeeeeeeccc-cceeeeec--ccee
Confidence            433 233333334443332     467777777776  7777775442 3678999999999999 88888775  5899


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|+||+ ++.|.|.|++++++...+.
T Consensus       190 ~~~ss~k~-~~~~~~~~~~~~~~~~~~~  216 (360)
T d1bjna_         190 IYAGAQKN-IGPAGLTIVIVREDLLGKA  216 (360)
T ss_dssp             EEEETTTT-TSSTTCEEEEEEGGGCSCC
T ss_pred             EEEEcccc-cccCCCceeEeeehhhhhc
Confidence            99999999 7778888888887766544

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.61  E-value=3.7e-16  Score=146.57  Aligned_cols=167  Identities=11%  Similarity=0.037  Sum_probs=116.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcC--HHHHHHHHHcCCcEEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~--~~~ir~la~~~G~kV~~v  228 (344)
                      +....+.++++|+.++++||++ ++|+|+|++|++++.+-++-...+.+|+.++.. .|+  ...|..++++.|..+..+
T Consensus        43 s~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~-~~g~~~~~~~~~~~~~g~~~~~~  120 (361)
T d2c0ra1          43 GAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNFLKEGQTANYV-MTGSWASKALKEAKLIGDTHVAA  120 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEE-ECSHHHHHHHHHHHHHSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhccccCCCceEEE-eechhhhhhhhhhhhcCceeeee
Confidence            3456678899999999999996 467999999998887765554445667665433 333  445667777889999998


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcE
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDF  307 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DF  307 (344)
                      ..++. ..++.+.+++.+...      ..+. ....+|.++|+..|.. ++++|++++|||+|++ |+.++|+.++++||
T Consensus       121 ~~~~~-~~~~~~~~~~~~~~~------~~~~-v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~-g~~~id~~~~di~~  191 (361)
T d2c0ra1         121 SSEAS-NYMTLPKLQEIQLQD------NAAY-LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDI-LSRPFDLNQFGLVY  191 (361)
T ss_dssp             ECGGG-TTCSCCCGGGCCCCT------TEEE-EEEESEETTTTEECSSCCCCTTSCEEEECTTTT-TSSCCCGGGCSEEE
T ss_pred             ccccc-cccchhhhhhhcccC------cceE-EEEecccceecceEEEeeccCCceEEEEeeccc-cccccccccceeEE
Confidence            87763 455666666554321      1221 1112499999976754 5899999999999999 99999999876665


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCC
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                        ++.||. ++.| |.+++++....
T Consensus       192 --~s~~k~-~~~~-~~~~~~~~~~~  212 (361)
T d2c0ra1         192 --AGAQKN-LGPS-GVTVVIVREDL  212 (361)
T ss_dssp             --EETTTT-TCCS-SCEEEEEEGGG
T ss_pred             --Eecccc-cccc-cCcEEEEEhHH
Confidence              566887 6645 55555554433

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.55  E-value=4.8e-15  Score=144.20  Aligned_cols=171  Identities=9%  Similarity=-0.006  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCH--HHHHHHHHcCCcEEEEEeCCC
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEEL--DYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~--~~ir~la~~~G~kV~~vp~~~  232 (344)
                      ..+.+|++.+|+++|++    ..+|++|+|.+.|+++-..-.++||+|+ +..+|.+  +.++.+ ...+..+...+.+.
T Consensus        66 ~~i~eae~~~A~~~ga~----~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l-~~~~~~~~~~~~~~  140 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNAD----KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAM-AGGRPVYLQTNRNP  140 (462)
T ss_dssp             THHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTT-TCCEEEEECEEECT
T ss_pred             HHHHHHHHHHHHHhCCC----eEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHH-hcCCceeeeccccc
Confidence            46789999999999984    5888888887777654433367999965 6667663  333333 22234444344443


Q ss_pred             CC-------CccCHHHHHHHhhh----cCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCccC
Q 035915          233 LD-------LRIKGSQLSQYFRR----KCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRL  298 (344)
Q Consensus       233 ~~-------g~i~~~~L~~~l~~----~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~L  298 (344)
                      ..       ..++.+.+++....    .....++.++++.+.+|  |.+.|++.|.+ +|++|+++++|+||++ +....
T Consensus       141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~-~~~~~  219 (462)
T d1c4ka2         141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVG-YEQFI  219 (462)
T ss_dssp             TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCC-GGGSS
T ss_pred             ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhc-ccccc
Confidence            21       12333333332211    00112456666666666  99999988865 7999999999999999 87665


Q ss_pred             CCC-------------CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          299 NLA-------------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       299 DLs-------------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +..             ..++|++++|+||+ +|.|.|.+++.++....
T Consensus       220 ~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~-lg~~~~g~ll~~~~~~~  266 (462)
T d1c4ka2         220 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ-QAGFSQTSQIHKKDSHI  266 (462)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHH-SSCCTTCEEEEEECGGG
T ss_pred             CcCCcchhhccccccccCCccEEEEecCcc-cccccceEEEEeccccc
Confidence            531             23469999999999 88776666666665443

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.1e-14  Score=140.23  Aligned_cols=171  Identities=7%  Similarity=-0.052  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHH-hhCC--CCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeC-
Q 035915          156 IPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVG-ESYP--FFRGNFY-MTIIGEELDYVREFASFKESKVILAPE-  230 (344)
Q Consensus       156 ~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva-~sl~--~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~-  230 (344)
                      ....+.-+.+++++|.+.. ...+||+++|++.++++ .+..  ..+++++ ++...|.+  +...+...|++.+.++. 
T Consensus        94 ~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s--~~~a~~~~g~~~~~v~~~  170 (445)
T d3bc8a1          94 KITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS--CFKSMVTAGFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH--HHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHH--HHHHHHHcCCeeEEEEee
Confidence            3445677888999999754 37899999998655433 2221  2245664 56677663  22223456888777642 


Q ss_pred             -CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc------cCCC
Q 035915          231 -AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED------RLNL  300 (344)
Q Consensus       231 -~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~------~LDL  300 (344)
                       +..++.+|.++|++.+.+.. ..++.+|.+++.+|  |.+.|++.|++ |+++|+++|+|+|++. +..      +.++
T Consensus       171 ~~~~~~~id~~~l~~~i~~~~-~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~-~~~~~~~~~~~~~  248 (445)
T d3bc8a1         171 LEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGL-QSSKCMHLIQQGA  248 (445)
T ss_dssp             EETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTT-TCHHHHHHHHHHH
T ss_pred             ccCcccccCHHHHHHHHHhcc-ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchh-hhhhccccchhcc
Confidence             23357899999999986531 12466777776665  99999988875 6999999999999987 642      2233


Q ss_pred             CCCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      ...++|++++|+||+ +++|.|.|++++++..
T Consensus       249 ~~~~vd~~~~s~hK~-~~~p~g~~~l~~~~~~  279 (445)
T d3bc8a1         249 RVGRIDAFVQSLDKN-FMVPVGGAIIAGFNEP  279 (445)
T ss_dssp             HHSCCCEEEEEHHHH-HSCCSSCEEEEESCHH
T ss_pred             CcCCcceEEecCccc-cccCCCCceeeeCChH
Confidence            334699999999999 7889999999998643

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.51  E-value=9.9e-14  Score=129.99  Aligned_cols=160  Identities=7%  Similarity=-0.021  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      .+++..+++|+++|+.    .+++|+|+|.|+.+++.++.+++||+| ++.+.|... +.. ....|++.+.++++..++
T Consensus        32 ~v~~~E~~la~~~g~~----~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~-~~a-i~~~g~~pv~~d~~~~~~  105 (376)
T d1mdoa_          32 KNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST-LNM-IVLLGANPVMVDVDRDTL  105 (376)
T ss_dssp             HHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH-HHH-HHHTTCEEEEECBCTTTC
T ss_pred             HHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccccc-ccc-hhccccceeeeccccccc
Confidence            3456778899999984    489999999999999999989999985 577776632 122 233588988888877667


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCcc--CCCCCCCCcEEEEcc
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDR--LNLALHRPDFVLCNL  312 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~--LDLs~l~~DFvv~S~  312 (344)
                      .++.++|++.+++     +|+.|.++|. .|...|++.|.. ++++|+.++.||||++ |..-  ..+...+..+++|..
T Consensus       106 ~~d~~~l~~~i~~-----~tkaIi~~h~-~G~~~~~~~i~~i~~~~~i~vIeD~a~a~-g~~~~~~~~g~~g~~~~Sf~~  178 (376)
T d1mdoa_         106 MVTPEHIEAAITP-----QTKAIIPVHY-AGAPADLDAIYALGERYGIPVIEDAAHAT-GTSYKGRHIGARGTAIFSFHA  178 (376)
T ss_dssp             CBCHHHHHHHCCT-----TEEEECCBCG-GGCCCCHHHHHHHHHHHTCCBCEECTTCT-TCEETTEETTSSSEEEEECCT
T ss_pred             CCCHHHHHHhcCC-----CCeEEEEeCC-CCCccchhHHHHHHHhcCceEEeccchhc-cCeeCCeecccccCccccCCC
Confidence            8999999999975     4776665532 499999987764 6899999999999999 8642  334445555666667


Q ss_pred             ccCCCCCCCceEEEEEeCC
Q 035915          313 DNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       313 HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +|+ ++.+. -|+++.+++
T Consensus       179 ~K~-l~~g~-GG~i~t~~~  195 (376)
T d1mdoa_         179 IKN-ITCAE-GGIVVTDNP  195 (376)
T ss_dssp             TSS-SCSSS-CEEEEESCH
T ss_pred             cCC-CCCCC-CCEEEEech
Confidence            798 66453 366666654

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=1.9e-12  Score=128.44  Aligned_cols=191  Identities=12%  Similarity=0.012  Sum_probs=126.5

Q ss_pred             HHHHHHhhccC-CCC-hhhhhhHHHHHHHHHHHHHcCCCCC-------CCeEEEeCCHHHHHHHHHhh-----CC-----
Q 035915          136 PSRLLDILTKK-SSF-PGSFISIPEIQARNKVLKHCGLPDD-------EYLVLFTPNYRDAMMLVGES-----YP-----  196 (344)
Q Consensus       136 ~~~L~~~L~gn-ss~-~g~~as~~le~AR~~IA~~Lga~p~-------ey~VVFTsnaTeAlnlva~s-----l~-----  196 (344)
                      .+-+...+..| ..+ .+..++....++=+.++++||.+..       +-.-+||+|+|+|+-+.+..     ++     
T Consensus        91 ~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~  170 (476)
T d1js3a_          91 ADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAA  170 (476)
T ss_dssp             HHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhccc
Confidence            33444444444 222 3334555667888899999998531       22578999999997654321     11     


Q ss_pred             ---CCCC----C--eEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCC-CeeEEEEeCccc-
Q 035915          197 ---FFRG----N--FYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHT-PKGLFSYPADIN-  265 (344)
Q Consensus       197 ---~~~G----d--~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~-~t~LVa~~avSN-  265 (344)
                         +..+    .  .+++...|.+  +...+.-.|..++.+|.+. +++++.+.|++.+.+..... .+-+|+.++-++ 
T Consensus       171 ~~g~~~~~~~~~~vv~~s~~~H~S--i~ka~~~lGl~~~~v~~d~-~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~  247 (476)
T d1js3a_         171 SPGLTQGAVLEKLVAYASDQAHSS--VERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTS  247 (476)
T ss_dssp             STTCCHHHHHHHEEEEEETTCCHH--HHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTT
T ss_pred             ccCcccccccCceEEEecccccHH--HHHHHHhcCceEEEeccCC-CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCcc
Confidence               1111    1  1345555543  4444555688899999986 58999999999997532211 233444454443 


Q ss_pred             -cccccHHHHHH-HHhCCcEEEecccccCcCCccCC-----CCC-CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          266 -GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN-----LAL-HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       266 -G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD-----Ls~-l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                       |.+-|++.|++ |+++++++|||||+.. .....+     +.. ..+|.+++++||| ++.|.++|++++|+.
T Consensus       248 ~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg-~~~~~~~~~~~~~gi~~aDSit~d~HK~-l~~P~~~g~~l~r~~  319 (476)
T d1js3a_         248 CCSFDNLLEVGPICHEEDIWLHVDAAYAG-SAFICPEFRHLLNGVEFADSFNFNPHKW-LLVNFDCSAMWVKRR  319 (476)
T ss_dssp             TCCBCCHHHHHHHHHHTTCEEEEECTTGG-GGGGSTTTGGGGTTGGGCSEEEECHHHH-SSCCSSCEEEEESCH
T ss_pred             ceeeccHHHHHHHHHhcCcEEEEecccch-hhhhhcchhhhhcCCcccceeeecCccc-cccCCcceeecccch
Confidence             99999999976 6999999999999865 333322     111 2589999999999 777999999999873

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.34  E-value=1.6e-12  Score=124.98  Aligned_cols=168  Identities=10%  Similarity=0.020  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHH-HHHHHHhhCC-CCCCCe-EEEcCCcCHHHHHHHHHcCCcEEEEEeC--C
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRD-AMMLVGESYP-FFRGNF-YMTIIGEELDYVREFASFKESKVILAPE--A  231 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTe-Alnlva~sl~-~~~Gd~-ivS~~eH~~~~ir~la~~~G~kV~~vp~--~  231 (344)
                      ...+.-..+++++|.+.   ...++.++|. ++.+++.++. ..++++ +++...|.+  +...+...|++.+.++.  +
T Consensus       114 ~~~~~~~~~~~~~g~~~---~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s--~~k~~~~~g~~~~~v~~~~~  188 (434)
T d2z67a1         114 LTNKILESFFKQLGLNV---HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS--PIKAVSFVGMNMRLVETVLD  188 (434)
T ss_dssp             HHHHHHHHHHHHTTCCC---EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHHhcCCCc---ceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHH--HHHHHHHhCCcceEEEeecC
Confidence            33555566788999863   3566655554 4444444332 224666 457777763  22223445887777653  2


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCcCCc-----cCCCCCC
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVVGED-----RLNLALH  303 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-----~LDLs~l  303 (344)
                      ...+.+|.++|++.+........+.+|..+..++  |.+.|++.|.. ||++|+++++|++|+. +..     +......
T Consensus       189 ~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~-~~~~~~~~~~~~~~~  267 (434)
T d2z67a1         189 GDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAI-QNNYYLEKLKKAFKY  267 (434)
T ss_dssp             TTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTT-TCHHHHHHHHHHHTS
T ss_pred             CCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchh-hhhhccccccccccC
Confidence            3346899999999997532222466677776665  99999988865 6999999999999986 432     2223457


Q ss_pred             CCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          304 RPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      ++|++++|+||+ +++|.|.|+++++++
T Consensus       268 ~~D~~~~s~hK~-l~~~~g~~~~~~~~~  294 (434)
T d2z67a1         268 RVDAVVSSSDKN-LLTPIGGGLVYSTDA  294 (434)
T ss_dssp             CCSEEEEEHHHH-HCCCSSCEEEEESCH
T ss_pred             CcceEEEcCccc-cccCCCccccccCcH
Confidence            899999999999 788999999999864

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.08  E-value=1.3e-10  Score=109.94  Aligned_cols=156  Identities=12%  Similarity=0.040  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EE-c-CCcCHHHHHHHHHcCCcEEEEEeCCCCCC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MT-I-IGEELDYVREFASFKESKVILAPEAWLDL  235 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS-~-~eH~~~~ir~la~~~G~kV~~vp~~~~~g  235 (344)
                      ++.|+..++.++.++.+ +++.|+|+++|+..++.++  .+|+.+ +. . ..|..  +...++-.|+++.  +.+    
T Consensus        53 ~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al--~~~~~vi~~~~~~~~~~--~~~~~~l~g~~~v--~~~----  121 (366)
T d2aeua1          53 EKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPS--IERSCKIVNAKYF--ESD----  121 (366)
T ss_dssp             HHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTH--HHHHHHHTTCEEE--EES----
T ss_pred             HHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHh--CCCCEEEEecCCCcchh--HHHHHHhcCCeEE--CCC----
Confidence            56677788889887654 7999999999998888775  356664 32 2 23442  2233344577653  322    


Q ss_pred             ccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCC----CCCCcE
Q 035915          236 RIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLA----LHRPDF  307 (344)
Q Consensus       236 ~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs----~l~~DF  307 (344)
                        +.++|++.+++     +|+++.+...+|   +.+.+++.|.+ |+++|+++++|.++.. +....+..    ..++|+
T Consensus       122 --d~e~l~~~i~~-----~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~-~~~~~~~~~~~~~~~~di  193 (366)
T d2aeua1         122 --KVGEILNKIDK-----DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGA-RVRLLFNQPPALKLGADL  193 (366)
T ss_dssp             --CHHHHHTTCCT-----TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHH-HHHHHTTCCCHHHHTCSE
T ss_pred             --CHHHHHHhcCC-----CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccc-cccccccCCCHhhcCceE
Confidence              56788888875     478888765544   55677876754 6899999999999986 53322222    357999


Q ss_pred             EEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          308 VLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       308 vv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +++|+||. +++| ++|+++.+++..+.
T Consensus       194 ~~~S~sK~-~~g~-~~G~i~~~~~~i~~  219 (366)
T d2aeua1         194 VVTSTDKL-MEGP-RGGLLAGKKELVDK  219 (366)
T ss_dssp             EEEETTSS-SSSC-SCEEEEEEHHHHHH
T ss_pred             EEeccccc-cccc-ceeEEEecHHHHHH
Confidence            99999998 8877 68999998876543

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=1.9e-09  Score=100.46  Aligned_cols=165  Identities=11%  Similarity=0.008  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC--CCC
Q 035915          158 EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA--WLD  234 (344)
Q Consensus       158 le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~--~~~  234 (344)
                      ..+.|+.||+++|++++  +|+||+|+|+|+++++.++. .+|+.++ ..-.|+.  ....+...|.+++.++.+  ...
T Consensus        63 ~~elr~aiA~~~~~~~~--~Iiit~G~~~al~~~~~~l~-~~~d~v~~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~  137 (368)
T d1v2da_          63 LPALREALAEEFAVEPE--SVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDV--YLPDAFLAGAKARLVRLDLTPEG  137 (368)
T ss_dssp             CHHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECEEETTE
T ss_pred             CHHHHHHHHhhcccCCc--ceeeccchHHHHHHHhhccc-cccccccccCCcchh--hhhHHHhcCCccceecccccccc
Confidence            34689999999999877  79999999999999999883 5677754 4444442  122234457887776653  223


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH---H-HHHhCCcEEEecccccCcCCccCCCC-----CC
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI---S-EAHRNSWHVLLDATALVVGEDRLNLA-----LH  303 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~~LDLs-----~l  303 (344)
                      ..++.++|++++++     .++++.++..+|  |+.++.+.+   . .|+++|++++.|.++.. ........     ..
T Consensus       138 ~~~d~~~l~~~~~~-----~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~-~~~~~~~~~~~~~~~  211 (368)
T d1v2da_         138 FRLDLSALEKALTP-----RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDE-LYYGERPRRLREFAP  211 (368)
T ss_dssp             EECCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCHHHHCT
T ss_pred             ccCCHHHHHHhhcc-----CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhh-hcccccccccccccc
Confidence            46788999888765     467777776666  999996544   3 35899999999998875 43333322     12


Q ss_pred             CCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          304 RPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      ....++.++-|. ++.|. .+|.++..++..+
T Consensus       212 ~~~~~~~~~sk~-~~~~G~R~g~~~~~~~~~~  242 (368)
T d1v2da_         212 ERTFTVGSAGKR-LEATGYRVGWIVGPKEFMP  242 (368)
T ss_dssp             TTEEEEEEHHHH-TTCGGGCCEEEECCTTTHH
T ss_pred             cccceeeccccc-ccccccccccccccccccc
Confidence            345566677776 67663 3788877776654

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.05  E-value=1.8e-09  Score=105.86  Aligned_cols=178  Identities=13%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             HHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHH
Q 035915          140 LDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFAS  219 (344)
Q Consensus       140 ~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~  219 (344)
                      .+++.|.-.|.+..   .+.+-.+++|++||..    .++||+++|.|+.++..++ .++|++|++.. |-.. ......
T Consensus        62 aa~~~GDd~Y~~dp---t~~~lE~~~a~l~G~e----~al~~~SGt~An~~a~~~l-~~~Gd~Vi~~~-~f~~-~~~~i~  131 (456)
T d1c7ga_          62 AGMMIGDEAYAGSE---NFYHLEKTVKELFGFK----HIVPTHQGRGAENLLSQLA-IKPGQYVAGNM-YFTT-TRFHQE  131 (456)
T ss_dssp             HHTTSCCCCSSSCH---HHHHHHHHHHHHHCCS----EEEEESSHHHHHHHHHHHH-CCTTEEEEESS-CCHH-HHHHHH
T ss_pred             HHHhccchhccCCc---hHHHHHHHHHHHhCCC----eEEECCCHHHHHHHHHHHh-cCCCCeEecCc-chHH-HHHHHH
Confidence            34456776666543   3445567799999984    4899999999999888887 57899988654 2211 111122


Q ss_pred             cCCcEEEEEeC---------CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHH---H-HHHhCCcE
Q 035915          220 FKESKVILAPE---------AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWI---S-EAHRNSWH  283 (344)
Q Consensus       220 ~~G~kV~~vp~---------~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~I---a-~ar~~g~~  283 (344)
                      ..|+....+..         +...+.++.++|++.+++..+ ..+.++++...+|   |..+|++.+   . .|+++|+.
T Consensus       132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~-~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~  210 (456)
T d1c7ga_         132 KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIK  210 (456)
T ss_dssp             HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCC
T ss_pred             HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCC-ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCE
Confidence            34666554332         122467899999999986532 2356777776655   788877544   3 35899999


Q ss_pred             EEecccccCcCCc-----------cCCCCC------CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          284 VLLDATALVVGED-----------RLNLAL------HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       284 vlvDAaQa~~G~~-----------~LDLs~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      +|+|+++++ |..           ..++.+      -.+|.+++|+||. +++|.| |+++.+++
T Consensus       211 ~~~D~a~~~-~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~-~~~~~G-G~i~~~~~  272 (456)
T d1c7ga_         211 IFYDATRCV-ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKD-CLVNIG-GFLCMNDE  272 (456)
T ss_dssp             EEEECTTHH-HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTT-TCCSSC-EEEEESCH
T ss_pred             EEEEcchhh-cchhhhcccccccCCCChhhhccccccccccEEEecccc-ccccce-eEEEcCCH
Confidence            999999986 531           111111      1479999999998 776644 66665543

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=4.2e-09  Score=93.34  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=99.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcCHH-HHHHHHHcCCcEEEEEeC
Q 035915          153 FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEELD-YVREFASFKESKVILAPE  230 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~~~-~ir~la~~~G~kV~~vp~  230 (344)
                      .....++++|+.+|+++|++.   +|+||+|+|+|+++++.... ..++. ++....|... ....+....+..+..++.
T Consensus        35 ~~~~~~~~l~~~la~~~g~~~---~v~f~~sGt~An~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (345)
T d1v72a1          35 GTDELTAQVKRKFCEIFERDV---EVFLVPTGTAANALCLSAMT-PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD  110 (345)
T ss_dssp             TCSHHHHHHHHHHHHHHTSCC---EEEEESCHHHHHHHHHHTSC-CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHCCCc---EEEECCchHHHHHHHHHHHH-hcCCccccccccceeeechhhHHHhcCcccccccc
Confidence            455677999999999999852   69999999999999887763 34555 4444444321 111223334666777666


Q ss_pred             CCCCCccCHHHHHHHhhhcCCC-CC--eeEEEEeCccc-cccccHHHH---H-HHHhCCcEEEecccccCcCCccCCCC-
Q 035915          231 AWLDLRIKGSQLSQYFRRKCKH-TP--KGLFSYPADIN-GTRYSMHWI---S-EAHRNSWHVLLDATALVVGEDRLNLA-  301 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~~~~~-~~--t~LVa~~avSN-G~i~Pl~~I---a-~ar~~g~~vlvDAaQa~~G~~~LDLs-  301 (344)
                      ++ ++.++.+++...+...... ..  +.++.....++ |...+++++   . .++++|+.+++|++|.. +....+.. 
T Consensus       111 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~-~~~~~~~~~  188 (345)
T d1v72a1         111 GP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFA-NALVSLGCS  188 (345)
T ss_dssp             CG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHH-HHHHHHTCC
T ss_pred             cc-cccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccc-eeccccccC
Confidence            55 5778999999888653211 11  23333433333 555555443   3 35899999999999975 44333322 


Q ss_pred             ------CCCCcEEEEccccC
Q 035915          302 ------LHRPDFVLCNLDNT  315 (344)
Q Consensus       302 ------~l~~DFvv~S~HK~  315 (344)
                            ....+.++++.+|.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~  208 (345)
T d1v72a1         189 PAEMTWKAGVDALSFGATKN  208 (345)
T ss_dssp             TTTTTGGGTCCEEEECCGGG
T ss_pred             HHHhhccccccccccCcccc
Confidence                  13466777777776

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.03  E-value=2.7e-09  Score=101.52  Aligned_cols=181  Identities=10%  Similarity=-0.020  Sum_probs=122.4

Q ss_pred             cchHHHHHHhhccC--CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCc
Q 035915          133 QLEPSRLLDILTKK--SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGE  209 (344)
Q Consensus       133 ~~~~~~L~~~L~gn--ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH  209 (344)
                      .++.+.+.+.|...  ....|.    .+++-.+++|+++|+.    .+++|+|+|.|+.+++.++.+++||+| ++.+.+
T Consensus        13 ~~~~~~~~~~l~~g~~~~~~g~----~v~~fE~~~a~~~g~~----~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~   84 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWWRMGGD----EVNSFEREFAAHHGAA----HALAVTNGTHALELALQVMGVGPGTEVIVPAFTF   84 (384)
T ss_dssp             HHHHHHHHHHHHTSCCBTTTCS----HHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred             HHHHHHHHHHHHcCCeeecCCH----HHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccc
Confidence            34455555555443  123343    3455667899999985    489999999999999999989999985 566665


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecc
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDA  288 (344)
                      ... + ......|++++.++++..+..++.+++++.+++     +|+.|.+.+. .|...+++.+.. ++++++.++.|+
T Consensus        85 ~a~-~-~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~-----~tk~i~~~~~-~g~~~d~~~i~~~~~~~~i~lieD~  156 (384)
T d1b9ha_          85 ISS-S-QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-----RTKVIMPVHM-AGLMADMDALAKISADTGVPLLQDA  156 (384)
T ss_dssp             THH-H-HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-----TEEEECCBCG-GGCCCCHHHHHHHHHHHTCCBCEEC
T ss_pred             ccc-c-ccccccccccccccccccccccchhhhcccccc-----cccccccccc-cccccccccchhhhhhhhhhhhhhh
Confidence            532 1 123346999999888776778999999988865     4666654322 488899977754 689999999999


Q ss_pred             cccCcCCccCC--CCCC-CCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          289 TALVVGEDRLN--LALH-RPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       289 aQa~~G~~~LD--Ls~l-~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +|+. |..--.  +... .+.+++|+..|. ++.. +-|+++.+++-
T Consensus       157 a~a~-ga~~~g~~~g~~g~~~~~Sf~~~K~-i~~g-~GG~i~t~~~~  200 (384)
T d1b9ha_         157 AHAH-GARWQGKRVGELDSIATFSFQNGKL-MTAG-EGGAVVFPDGE  200 (384)
T ss_dssp             TTCT-TCEETTEEGGGSSSCEEEECCTTSS-SCSS-SCEEEEECTTC
T ss_pred             ceec-ccccCCEecCcccccceeccccccc-cccc-ccchhhhhhHH
Confidence            9999 864211  1111 244455555787 5543 23556665443

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.97  E-value=1.5e-08  Score=94.86  Aligned_cols=175  Identities=11%  Similarity=-0.006  Sum_probs=113.5

Q ss_pred             HHHHHHhhccC-CCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcC--H
Q 035915          136 PSRLLDILTKK-SSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEE--L  211 (344)
Q Consensus       136 ~~~L~~~L~gn-ss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~--~  211 (344)
                      .+.+.+.|..+ -+..|.    .+++-.+.+++++|..    .+++|+|+|.|+.+++.++.+++||+| ++.+.+.  .
T Consensus         4 ~~~~~~~l~~~~~~~~G~----~~~~fE~~~~~~~~~~----~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~   75 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPLGE----FVNRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV   75 (374)
T ss_dssp             HHHHHHHHHHTTTSCTTH----HHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT
T ss_pred             HHHHHHHHhcCCcCCCCH----HHHHHHHHHHHHHCcC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH
Confidence            45555555544 112233    3455667789999984    489999999999999999999999985 5677665  2


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHH-HHHhCCcEEEecccc
Q 035915          212 DYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWIS-EAHRNSWHVLLDATA  290 (344)
Q Consensus       212 ~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia-~ar~~g~~vlvDAaQ  290 (344)
                      +++.    ..|++.+.++++... ..............  ..+++.+.+.+. .|...+++.+. .|+++|+.++-|+||
T Consensus        76 ~~~~----~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~--~~~~~aii~~~~-~G~~~d~~~i~~~~~~~~i~vIED~a~  147 (374)
T d1o69a_          76 APIC----YLKAKPVFIDCDETY-NIDVDLLKLAIKEC--EKKPKALILTHL-YGNAAKMDEIVEICKENDIVLIEDAAE  147 (374)
T ss_dssp             HHHH----HTTCEEEEECBCTTS-SBCHHHHHHHHHHC--SSCCCEEEEECG-GGCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHh----hccceeEeccccccc-ccccccccccchhc--cccccccccccc-ccchhhhHHHHHHhhccCcchhhhhhh
Confidence            3332    359999998887432 22222222222111  123555555432 48899997775 579999999999999


Q ss_pred             cCcCCccCC--CCCCCCcEEEEccc--cCCCCCCCceEEEEEeC
Q 035915          291 LVVGEDRLN--LALHRPDFVLCNLD--NTQNAQPSKITCLLIRK  330 (344)
Q Consensus       291 a~~G~~~LD--Ls~l~~DFvv~S~H--K~l~G~P~GiG~L~Vr~  330 (344)
                      +. |..--.  +.. --|+-+||+|  |. ++.- |-|+++.++
T Consensus       148 a~-g~~~~~~~~G~-~gd~~~fSf~~~K~-l~tg-eGG~i~tnn  187 (374)
T d1o69a_         148 AL-GSFYKNKALGT-FGEFGVYSYNGNKI-ITTS-GGGMLIGKN  187 (374)
T ss_dssp             CT-TCEETTEETTS-SSSEEEEECCTTSS-SCCS-SCEEEEESC
T ss_pred             hh-cceECCeecCC-CCceEEEeccCccc-cccc-cceeehhhh
Confidence            99 864211  112 2499999998  76 5433 446666654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.95  E-value=6.2e-09  Score=90.53  Aligned_cols=155  Identities=11%  Similarity=0.057  Sum_probs=92.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeE-EEcCCcCHH-HHHHHHHcCCcEEEEEeCC
Q 035915          154 ISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFY-MTIIGEELD-YVREFASFKESKVILAPEA  231 (344)
Q Consensus       154 as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~i-vS~~eH~~~-~ir~la~~~G~kV~~vp~~  231 (344)
                      .....+++|++||+++|++++  +|+||+|+|||+++++..+. .+++.+ +....|... ............+...+..
T Consensus        33 ~~~~~~~lr~~ia~~~g~~~~--~v~~tsggtean~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (340)
T d1svva_          33 QDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLAL-RPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPD  109 (340)
T ss_dssp             CSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHHC-CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHHh-hhccccccccccceeeeecccccccceeeeeccccc
Confidence            455678999999999999865  79999999999999888763 455554 444443321 0111122223333333332


Q ss_pred             CCCCccCHHHHHHHhhh-cCCC-CCeeEEEEeCccc-cccccHHHHH----HHHhCCcEEEecccccCcCCccCCCCCC-
Q 035915          232 WLDLRIKGSQLSQYFRR-KCKH-TPKGLFSYPADIN-GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLNLALH-  303 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~-~~~~-~~t~LVa~~avSN-G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDLs~l-  303 (344)
                      .   ....+...+.... .... ..+.++.++..+| |.+.+.+.+.    .++++|..+++|+++.. +....+.... 
T Consensus       110 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~-~~~~~~~~~~~  185 (340)
T d1svva_         110 G---KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLA-SALSSPVNDLT  185 (340)
T ss_dssp             S---CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHH-HHHTSTTCCCC
T ss_pred             c---cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeecccee-eeecccccccc
Confidence            2   2233333222221 1111 2234555555555 7777765442    35789999999999987 6666555433 


Q ss_pred             ------CCcEEEEccccC
Q 035915          304 ------RPDFVLCNLDNT  315 (344)
Q Consensus       304 ------~~DFvv~S~HK~  315 (344)
                            ..+...+++.|.
T Consensus       186 ~~~~~~~~~~~~~~~~~~  203 (340)
T d1svva_         186 LADIARLTDMFYIGATKA  203 (340)
T ss_dssp             HHHHHHHCSEEEEECTTT
T ss_pred             cccccccceeeecCCccc
Confidence                  356777777776

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=98.86  E-value=1.6e-08  Score=96.82  Aligned_cols=167  Identities=9%  Similarity=0.058  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          159 IQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       159 e~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.|+.||++++        ++++  +|++|+|+|+++.+++.++ ..+||.|+. .-.|+. ....+....|++++.++
T Consensus        86 ~~LR~aiA~~l~~~~~~~~~~~~e--~Ivit~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~-~~~~~~~~~g~~~v~v~  161 (428)
T d1iaya_          86 PEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPA-FNRDLRWRTGVQLIPIH  161 (428)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTT-HHHHTTTTTCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCChh--hEEEcCCHHHHHHHHHHHh-CCCCCEEEEccCCchH-HHHHHHHhcCCeEEEee
Confidence            457888888763        4455  7999999999999999887 468998653 333331 11222234589999988


Q ss_pred             CCCC-CCccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCC----cc
Q 035915          230 EAWL-DLRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGE----DR  297 (344)
Q Consensus       230 ~~~~-~g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~----~~  297 (344)
                      .+.. +..++.+++...+... ....+++++.++.-+|  |..++.+.+.    .|+++++++++|.+.+- -.    ..
T Consensus       162 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~-~~~~~~~~  240 (428)
T d1iaya_         162 CESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA-TVFDTPQF  240 (428)
T ss_dssp             CCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG-GCCSSSCC
T ss_pred             cccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccc-cccCcccc
Confidence            7643 2457777776554311 1123577777775566  9999975443    35889999999999874 11    01


Q ss_pred             CC-----------CCCCCCcEEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          298 LN-----------LALHRPDFVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       298 LD-----------Ls~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                      ..           +...+--+++.|+-|. |+.|- .+|+++..++
T Consensus       241 ~s~~~~~~~~~~~~~~~~~vi~~~s~SK~-~~~~GlRiG~~~~~~~  285 (428)
T d1iaya_         241 VSIAEILDEQEMTYCNKDLVHIVYSLSKD-MGLPGFRVGIIYSFND  285 (428)
T ss_dssp             CCHHHHHTSGGGTTSCTTSEEEEEESTTT-SSCGGGCEEEEEESCH
T ss_pred             cccccccchhhccccccceEEEEecCCCc-ccCCCccccccccccc
Confidence            11           1111223788999998 87662 4898887554

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=98.85  E-value=5.1e-08  Score=92.10  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=109.5

Q ss_pred             HHHHHHHHc----C--CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          161 ARNKVLKHC----G--LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       161 AR~~IA~~L----g--a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .|+.|++++    |  ++++  +|++|+|+++|+.+++.++ ..+||.++. .-.+..  ....++..|.+++.++.+..
T Consensus        72 lR~aia~~~~~~~g~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~Vlv~~P~y~~--~~~~~~~~~~~~v~~~~~~~  146 (388)
T d1j32a_          72 LREAIAQKLQRDNGLCYGAD--NILVTNGGKQSIFNLMLAM-IEPGDEVIIPAPFWVS--YPEMVKLAEGTPVILPTTVE  146 (388)
T ss_dssp             HHHHHHHHHHHHHCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTH--HHHHHHHTTCEEEEECCCGG
T ss_pred             HHHHHHHHHHHhcccCCCCc--eEEEcCCHHHHHHHHHHHH-hCCCCEEEEcCCCcHH--HHHHHHHhcCeEEEEecccc
Confidence            555666553    4  4555  7999999999999999887 568998653 333331  22334446788888776532


Q ss_pred             C-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcC---CccCCCCCC
Q 035915          234 D-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVG---EDRLNLALH  303 (344)
Q Consensus       234 ~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G---~~~LDLs~l  303 (344)
                      + ..++.++|++.+++     +++++.++.-+|  |..++.+.+.+    ++++++++++|-+.....   .....+...
T Consensus       147 ~~~~~d~~~l~~~~~~-----~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~  221 (388)
T d1j32a_         147 TQFKVSPEQIRQAITP-----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAA  221 (388)
T ss_dssp             GTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cccCCCHHHHHHhCCC-----CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHh
Confidence            2 35789999988875     467777765566  99999865543    478999999999874301   111112111


Q ss_pred             -----CCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          304 -----RPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       304 -----~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                           +-.+++.|+-|. |+.| |  +|.++..++..+
T Consensus       222 ~~~~~~~~i~~~S~SK~-~~~~-GlRvG~~~~~~~~~~  257 (388)
T d1j32a_         222 SPEAYERSVVCSGFAKT-YAMT-GWRVGFLAGPVPLVK  257 (388)
T ss_dssp             CHHHHHTEEEEEESTTT-TTCT-TTCCEEEECCHHHHH
T ss_pred             CcccccceeEecCChhh-hhcc-hhHeEEEEECHHHHH
Confidence                 235889999999 8867 6  899887665543

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=1.5e-08  Score=94.78  Aligned_cols=165  Identities=10%  Similarity=0.067  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.||++++      ..+ +.+|++|+|+++++.++..++ ..+||.++. .-.|..  ....++..|++++.+|.+
T Consensus        65 ~~lr~aia~~~~~~~~~~~~~-~~~i~~t~G~~~~l~~~~~~l-~~~gd~vlv~~P~y~~--~~~~~~~~g~~~~~~~~~  140 (388)
T d1gdea_          65 LELREAIAEKLKKQNGIEADP-KTEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVS--YAPAVILAGGKPVEVPTY  140 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCT-TTSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTT--HHHHHHHHTCEEEEEECC
T ss_pred             HHHHHHHHHHHHhhccccCCC-hheeeeccCcchHHHHHHHHh-cCCCCEEEECCCCcHH--HHHHHHHcCCEEEEeecc
Confidence            446888887763      222 237999999999999999887 468998653 333431  223344458999999875


Q ss_pred             CCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCCC
Q 035915          232 WLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNLA  301 (344)
Q Consensus       232 ~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDLs  301 (344)
                      ..+ ..++.++|++.+++     +++++.++.-+|  |..++.+.+.    .|++++++++.|-+..-.   +.....+.
T Consensus       141 ~~~~~~~d~~~l~~~~~~-----~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~  215 (388)
T d1gdea_         141 EEDEFRLNVDELKKYVTD-----KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIA  215 (388)
T ss_dssp             GGGTTCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             cccCCCCCHHHHHHhCcc-----CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChh
Confidence            432 36789999988865     467777765556  9999986553    358899999999987631   11111221


Q ss_pred             ---C-CCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          302 ---L-HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       302 ---~-l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                         . .+-.+++.|+-|. ||.|. .+|.++..++..
T Consensus       216 ~~~~~~~~~i~~~S~SK~-~~~~GlR~G~ii~~~~~~  251 (388)
T d1gdea_         216 SLDGMFERTITVNGFSKT-FAMTGWRLGFVAAPSWII  251 (388)
T ss_dssp             GSTTCGGGEEEEEESTTT-TTCGGGCCEEEECCHHHH
T ss_pred             hccCCCCeEEEEeCChhh-ccCccccEEEEEeeccch
Confidence               1 1235889999999 88672 489888776544

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.6e-08  Score=94.16  Aligned_cols=162  Identities=12%  Similarity=0.000  Sum_probs=106.7

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEE-cCCcCHHHHHHHHHcCCcEEEEEeCCCCCCcc
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMT-IIGEELDYVREFASFKESKVILAPEAWLDLRI  237 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i  237 (344)
                      +.|+.+|+++|++|+  +|++|+|+++++.++..++ ..+||. |+. .-.+..  ....++..|.+++.+|.+. +..+
T Consensus        60 ~Lr~~ia~~~gv~pe--~I~it~Gs~eai~~~~~~~-~~pgd~~Vl~~~P~y~~--~~~~~~~~g~~v~~~~~~~-~~~~  133 (354)
T d1fg7a_          60 AVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGM--YSVSAETIGVECRTVPTLD-NWQL  133 (354)
T ss_dssp             HHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTH--HHHHHHHHTCEEEECCCCT-TSCC
T ss_pred             HHHHHHHHHhCCChH--HeeeccCchHHHHHHHHHh-hcccccccccccccccc--chhhhhccCceeecccccc-cccc
Confidence            579999999999987  7999999999999999988 467874 553 333332  2233444589998888764 4678


Q ss_pred             CHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH---HHhCCcEEEe-cccccCcCC--ccCCCCCCCCcEEE
Q 035915          238 KGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE---AHRNSWHVLL-DATALVVGE--DRLNLALHRPDFVL  309 (344)
Q Consensus       238 ~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~---ar~~g~~vlv-DAaQa~~G~--~~LDLs~l~~DFvv  309 (344)
                      +.+++...+.      +++++.+..-+|  |..++-+.+..   +.+.+..+++ |+..-....  .+.......--+++
T Consensus       134 d~~~l~~~~~------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~  207 (354)
T d1fg7a_         134 DLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAIL  207 (354)
T ss_dssp             CHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEE
T ss_pred             chhhhhhccc------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEE
Confidence            8888876553      467777765555  99998755432   3334555555 443332111  11112223445777


Q ss_pred             EccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          310 CNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       310 ~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      .|+-|+ ||.|. .+|.++..++..+
T Consensus       208 ~S~SK~-~~laGlRiGy~i~~~~~i~  232 (354)
T d1fg7a_         208 RTLSKA-FALAGLRCGFTLANEEVIN  232 (354)
T ss_dssp             EESSST-TCCGGGCCEEEEECHHHHH
T ss_pred             eCCccc-cCCCccccccccccchhhh
Confidence            899999 88662 4888887765443

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.80  E-value=1e-08  Score=101.33  Aligned_cols=172  Identities=12%  Similarity=-0.034  Sum_probs=119.4

Q ss_pred             hhhhhhH-HHHHHHHHHHHHcCCCCCCCeE-EEeCCHHHHHHHHHhhCCCCCCCeEEEc-CC---cCHHHH-----HHHH
Q 035915          150 PGSFISI-PEIQARNKVLKHCGLPDDEYLV-LFTPNYRDAMMLVGESYPFFRGNFYMTI-IG---EELDYV-----REFA  218 (344)
Q Consensus       150 ~g~~as~-~le~AR~~IA~~Lga~p~ey~V-VFTsnaTeAlnlva~sl~~~~Gd~ivS~-~e---H~~~~i-----r~la  218 (344)
                      .|-..-+ ...-|.++..++||++++.+.+ |=.-+++.|+..+..++ +++||.|++. +.   |-....     ..-+
T Consensus        70 ~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~al-l~pgD~im~~~l~~GGHlshg~~~~~~~~~~  148 (470)
T d1rv3a_          70 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISA  148 (470)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSH
T ss_pred             CCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHh-cCCCCeEeeeccccCCcccccccccCCCccc
Confidence            3444333 4467889999999998653222 22348888888888887 5799998753 22   211110     0001


Q ss_pred             HcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCc-
Q 035915          219 SFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGED-  296 (344)
Q Consensus       219 ~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~-  296 (344)
                      ..+..++...+++..++.||.+++++..++.    +++|+.+...+.-...|++.+++ +.+.|+++++|++|.+ |.+ 
T Consensus       149 ~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~----kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~a-GLIA  223 (470)
T d1rv3a_         149 TSIFFESMAYKVNPDTGYIDYDRLEENARLF----HPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHIS-GLVV  223 (470)
T ss_dssp             HHHHSEEEEECBCTTTCSBCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTH-HHHH
T ss_pred             ccceeEeeEEEEecccCcccHHHHHHHHHhh----CcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhh-hhcc
Confidence            1123566677777777899999999887753    46788888655688899988876 5899999999999987 653 


Q ss_pred             ----cCCCCCCCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          297 ----RLNLALHRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       297 ----~LDLs~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                          +=.|.  .+|+++.|-||. |.||+| |+++.+++
T Consensus       224 ~g~~~sPl~--~aDvvt~tTHKt-lrGPrg-GiI~~~~~  258 (470)
T d1rv3a_         224 AGVVPSPFE--HCHVVTTTTHKT-LRGCRA-GMIFYRRG  258 (470)
T ss_dssp             HTSSCCGGG--TCSEEEEESSGG-GCCCSC-EEEEEECS
T ss_pred             ccccCChhh--eeeeeeeehhhh-ccCCcc-eEEEEccc
Confidence                22232  479999999999 777986 77777765

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.79  E-value=1.2e-08  Score=98.29  Aligned_cols=177  Identities=12%  Similarity=0.019  Sum_probs=110.4

Q ss_pred             hccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC------CCCCCeEEEcCCcCHHHHHH
Q 035915          143 LTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP------FFRGNFYMTIIGEELDYVRE  216 (344)
Q Consensus       143 L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~------~~~Gd~ivS~~eH~~~~ir~  216 (344)
                      ..+...|.+..   .+.+.++++++++|.+    .++||+++|+|+.+++..+.      ...+..++....|+.. ...
T Consensus        65 ~~gd~~y~~~~---~~~~le~~~a~l~g~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t-~~~  136 (465)
T d1ax4a_          65 ITGDEAYAGSR---NYYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT-TAA  136 (465)
T ss_dssp             HTCCCCSSSCH---HHHHHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHH-HHH
T ss_pred             hhhhhhhccCh---HHHHHHHHHHHHHCCC----EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhh-hHH
Confidence            34555555433   3455677899999984    59999999999888776541      1122223333335422 122


Q ss_pred             HHHcCCcEEEEEeC---------CCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHHH---H-HHhC
Q 035915          217 FASFKESKVILAPE---------AWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWIS---E-AHRN  280 (344)
Q Consensus       217 la~~~G~kV~~vp~---------~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~Ia---~-ar~~  280 (344)
                      .....|.....++.         +...+.++.++|++++++..+ ..+.++.+...+|   |..+|.+.+.   + |+++
T Consensus       137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~  215 (465)
T d1ax4a_         137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA-DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH  215 (465)
T ss_dssp             HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc-ccccceeeccccccCceecCCHHHHHHHHHHHHHc
Confidence            22334666654422         223467899999999975322 2355666665554   5556665443   3 5899


Q ss_pred             CcEEEecccccCcCCccC---------CCC--C------CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          281 SWHVLLDATALVVGEDRL---------NLA--L------HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       281 g~~vlvDAaQa~~G~~~L---------DLs--~------l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                      |+++++|++|.. |....         ..+  .      ...|.+++|+||. +++| +.|++++++.
T Consensus       216 g~~l~~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~-~~~~-~~g~l~~~~~  280 (465)
T d1ax4a_         216 GIFVVMDSARFC-ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD-PLLN-IGGLVAIRDN  280 (465)
T ss_dssp             TCCEEEECTTHH-HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTST-TCCS-SCEEEEESSC
T ss_pred             CCEEEEECcchh-hhhcccccccccccccchhhhccccccccceeEeecccC-cccc-cceeEeecch
Confidence            999999999985 43211         110  0      1279999999998 6656 6699988764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=98.79  E-value=3.8e-08  Score=92.42  Aligned_cols=162  Identities=11%  Similarity=0.035  Sum_probs=109.9

Q ss_pred             HHHHHHHHHc------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          160 QARNKVLKHC------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       160 ~AR~~IA~~L------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      +.|+.|++++      +++++  +|++|+|+++|+.+++.++ ..+||.|+ ..-.+..  ....++..|.+++.+|.+.
T Consensus        72 ~lR~~ia~~~~~~~~~~~~~~--~i~it~G~~~al~~~~~~l-~~~gd~vl~~~P~y~~--~~~~~~~~g~~~~~v~~~~  146 (382)
T d1b5pa_          72 ELREALAEKFRRENGLSVTPE--ETIVTVGGSQALFNLFQAI-LDPGDEVIVLSPYWVS--YPEMVRFAGGVVVEVETLP  146 (382)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHTTCEEEEEECCG
T ss_pred             HHHHHHHhhhhhhcccccccc--cceecCCHHHHHHHHHHHh-CCCCCEEEECCCCcHH--HHHHHHHhcCeEEEEeccc
Confidence            3666677665      45555  7999999999999999988 46899864 2323331  2334556799999988653


Q ss_pred             C-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCc--cCCC
Q 035915          233 L-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GED--RLNL  300 (344)
Q Consensus       233 ~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~--~LDL  300 (344)
                      . +..++.+++++.+++     +++++.++.-+|  |.+++-+.+.    .|++++++++.|-+..-.   +..  ++.+
T Consensus       147 ~~~~~~d~~~l~~~~~~-----~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  221 (382)
T d1b5pa_         147 EEGFVPDPERVRRAITP-----RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV  221 (382)
T ss_dssp             GGTTCCCHHHHHTTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT
T ss_pred             ccccCCCHHHHHHhCCC-----CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc
Confidence            2 235688888877754     466666654456  9999986554    358899999999887631   111  1111


Q ss_pred             CCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCcc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSFD  334 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~~  334 (344)
                      . .+--+++.|+=|. |+.| |  +|.++..++..+
T Consensus       222 ~-~~~~i~~~s~SK~-~~~~-GlR~G~~~~~~~~i~  254 (382)
T d1b5pa_         222 A-PEHTLTVNGAAKA-FAMT-GWRIGYACGPKEVIK  254 (382)
T ss_dssp             C-TTTEEEEEESTTT-TTCG-GGCCEEEECCHHHHH
T ss_pred             C-CCCEEEEecchhh-ccCc-HhheEEEEECHHHHH
Confidence            1 1234788899999 8877 5  899988765543

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.3e-07  Score=85.80  Aligned_cols=160  Identities=8%  Similarity=-0.003  Sum_probs=104.7

Q ss_pred             HHHHHHH----HcCC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC-
Q 035915          161 ARNKVLK----HCGL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW-  232 (344)
Q Consensus       161 AR~~IA~----~Lga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~-  232 (344)
                      .|++|++    .+|.  +++  +|+.|+|+++++..+..++ ..+||+|+. .-.|..  ....++..|.+++.++.+. 
T Consensus        40 lr~~ia~~~~~~~g~~~~~~--~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~~  114 (361)
T d1d2fa_          40 FLAAIAHWFSTQHYTAIDSQ--TVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDA--FYKAIEGNQRTVMPVALEKQ  114 (361)
T ss_dssp             HHHHHHHHHHHHSCCCCCGG--GEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHH--HHHHHHHTTCEEEEEECEEC
T ss_pred             HHHHHHHHHHHHhCCCCCcc--eEEEeCCHHHHHHHHhhhc-cccccccccccccccc--hhHHHHhhcceEEeeccccc
Confidence            4455554    4465  444  7999999999999999998 578998653 333331  3344455688888776542 


Q ss_pred             -CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHH---HH-HHHHhCCcEEEecccccCc---CCccCCCCC
Q 035915          233 -LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMH---WI-SEAHRNSWHVLLDATALVV---GEDRLNLAL  302 (344)
Q Consensus       233 -~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~---~I-a~ar~~g~~vlvDAaQa~~---G~~~LDLs~  302 (344)
                       .+..++.+.+++.+..    .+++++.++.-+|  |..++.+   ++ ..|+++|+++++|.+..-.   +..+..+..
T Consensus       115 ~~~~~~d~~~~~~~~~~----~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~  190 (361)
T d1d2fa_         115 ADGWFCDMGKLEAVLAK----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSN  190 (361)
T ss_dssp             SSSEECCHHHHHHHHTS----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGG
T ss_pred             ccccccccccchhhccc----CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccc
Confidence             2335788888888854    2578888887677  9999864   33 3468999999999987641   111222222


Q ss_pred             CC--CcEEEEccccCCCCCCC-ceEEEEEeC
Q 035915          303 HR--PDFVLCNLDNTQNAQPS-KITCLLIRK  330 (344)
Q Consensus       303 l~--~DFvv~S~HK~l~G~P~-GiG~L~Vr~  330 (344)
                      ..  -..+..|+=|. ++.|. ++|.+++..
T Consensus       191 ~~~~~~v~~~s~SK~-~~~~g~R~g~~~~~~  220 (361)
T d1d2fa_         191 VARGDWALLTSGSKS-FNIPALTGAYGIIEN  220 (361)
T ss_dssp             TCCSSEEEEECSHHH-HTCGGGCCEEEEECS
T ss_pred             ccccccccccccccc-cccccccceeeecch
Confidence            22  23667777786 66452 577777654

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.78  E-value=1.4e-07  Score=88.35  Aligned_cols=179  Identities=11%  Similarity=0.053  Sum_probs=115.2

Q ss_pred             ccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCC--eE-EEcCC
Q 035915          132 TQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGN--FY-MTIIG  208 (344)
Q Consensus       132 v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd--~i-vS~~e  208 (344)
                      .+++.+.+.+.|...--..|.    .+++-.+++++++|+.    .+++|+|+|.|+.+++.++....|+  +| ++.+.
T Consensus        11 ~~~~~~~v~~~l~~~~~~~G~----~v~~fE~~~~~~~g~k----~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t   82 (371)
T d2fnua1          11 DKEDKKAVLEVLNSKQLTQGK----RSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   82 (371)
T ss_dssp             CHHHHHHHHHHHTSSCCSSSH----HHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             CHHHHHHHHHHHcCCCccCCH----HHHHHHHHHHHHHCcC----eEEEEecHHHHHHHHHHHhcccCCCCCeeeccccc
Confidence            345566666655433111232    3455567899999984    4899999999999999998776654  54 56666


Q ss_pred             cCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEec
Q 035915          209 EELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       209 H~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvD  287 (344)
                      .... +.. ....|++.+.++++.. ..++.+++++.+++     +|+.|.+++. .|...+++.|.. ++++|+.++-|
T Consensus        83 ~~a~-~~a-i~~~G~~pv~vDi~~~-~~~~~~~~~~~~~~-----~t~avi~vh~-~G~~~~~~~i~~~~~~~~i~lIED  153 (371)
T d2fnua1          83 FVAT-ANM-LLESGYTPVFAGIKND-GNIDELALEKLINE-----RTKAIVSVDY-AGKSVEVESVQKLCKKHSLSFLSD  153 (371)
T ss_dssp             CTHH-HHH-HHHTTCEEEECCBCTT-SSBCGGGSGGGCCT-----TEEEEEEECG-GGCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             cccc-cee-eeccCccccccccccc-ccccchhhhhhccc-----hhhccccccc-cccccccccccccccccchhhccc
Confidence            5522 111 2336999999988764 45666666666554     4666655532 499999987765 68899999999


Q ss_pred             ccccCcCCccCCCC-CCCCcEEEEcc--ccCCCCCCCceEEEEEeC
Q 035915          288 ATALVVGEDRLNLA-LHRPDFVLCNL--DNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       288 AaQa~~G~~~LDLs-~l~~DFvv~S~--HK~l~G~P~GiG~L~Vr~  330 (344)
                      |||+. |...-+-. -..-|+.++|+  .|. +..- +-|+++.++
T Consensus       154 aaqa~-Ga~~~~~~~G~~g~~~~~Sf~~~K~-l~~g-~GG~i~t~~  196 (371)
T d2fnua1         154 SSHAL-GSEYQNKKVGGFALASVFSFHAIKP-ITTA-EGGAVVTND  196 (371)
T ss_dssp             CTTCT-TCEETTEETTSSSSEEEEECCTTSS-SCCS-SCEEEEESC
T ss_pred             hhhcc-CceeccccCCccccccccccccccc-cccc-cceEEEeec
Confidence            99999 86432211 11245555555  676 4422 334555443

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.75  E-value=1e-07  Score=92.25  Aligned_cols=163  Identities=9%  Similarity=-0.051  Sum_probs=116.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++...-..+...++||++-|+.    ..+.++++-.|+..++.++ .++||+++ +..-+.  ...+..+.++.|+++.
T Consensus        53 Y~R~~nPT~~~LE~~la~LEg~~----~a~~~~SGmaAi~~~l~~l-~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~  127 (392)
T d1gc0a_          53 YSRISNPTLNLLEARMASLEGGE----AGLALASGMGAITSTLWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLR  127 (392)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEE
T ss_pred             ecCCCChHHHHHHHHHHHHhCCc----ceeehhhHHHHHHHHHHhh-ccCCCeeecccccchhhhhhhhhhhccCCcccc
Confidence            34444445666777899999974    2455567777877777666 46899976 443354  3345556677899999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLNLAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LDLs~  302 (344)
                      +++..      +.+.+++++++     +|+||-+-..+|  ..++||+.|++ +|++|+.++||.+-+-+ ...|++   
T Consensus       128 ~~d~~------d~~~~~~ai~~-----~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~---  193 (392)
T d1gc0a_         128 HVDMA------DLQALEAAMTP-----ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE---  193 (392)
T ss_dssp             EECTT------CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG---
T ss_pred             cCCcc------CHHHHHHhCCC-----CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChHH---
Confidence            88653      46788888875     589998887777  99999988865 69999999999998852 345665   


Q ss_pred             CCCcEEEEccccCCCCCCC--ceEEEEEeCCC
Q 035915          303 HRPDFVLCNLDNTQNAQPS--KITCLLIRKKS  332 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~--GiG~L~Vr~~~  332 (344)
                      +++|+++-|+-|+ ++|=.  =.|++++++..
T Consensus       194 ~GaDivihS~TKy-i~Ghsd~~~G~v~~~~~~  224 (392)
T d1gc0a_         194 LGADLVVHSATKY-LSGHGDITAGIVVGSQAL  224 (392)
T ss_dssp             GTCSEEEEETTTT-TTCSSSCCCEEEEECHHH
T ss_pred             hCCCEEEEeccee-ecCCcccccccccchhHH
Confidence            5899999999999 76422  25666666543

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=5.2e-07  Score=85.82  Aligned_cols=174  Identities=9%  Similarity=0.010  Sum_probs=118.7

Q ss_pred             cccchHHHHHHhhccCCCC-hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCc
Q 035915          131 RTQLEPSRLLDILTKKSSF-PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGE  209 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~-~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH  209 (344)
                      .+++..+.+..+=.+...+ .-.-.....++..+.+|+|+|.+    ..++.++++.|+..++.++. .+++.++..-.+
T Consensus        57 v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e----~al~~~SG~~an~~~i~al~-~~~d~v~~d~~~  131 (383)
T d1bs0a_          57 IIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS----RALLFISGFAANQAVIAAMM-AKEDRIAADRLS  131 (383)
T ss_dssp             HHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHHC-CTTCEEEEETTC
T ss_pred             HHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCC----ceEEecccchhhHHHHHhhc-CCCceEEeeccc
Confidence            4555555555532222211 11112346688889999999974    47788888888888888774 578888877766


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEe
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLL  286 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlv  286 (344)
                      |...+.. ++..+.+++..+-+      |.++|++.+....  ..+.+|++..+.+  |.+.|++++.+ ++++|++++|
T Consensus       132 h~si~~g-~~~~~~~~~~~~hn------d~~~le~~l~~~~--~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~liv  202 (383)
T d1bs0a_         132 HASLLEA-ASLSPSQLRRFAHN------DVTHLARLLASPC--PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMV  202 (383)
T ss_dssp             CHHHHHH-HHTSSSEEEEECTT------CHHHHHHHHHSCC--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred             cHHHhhc-cccCCCcceEecch------HHHHHHHHhcccC--CCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEe
Confidence            6433333 34567787777643      4667877775421  2356777776664  99999987754 6899999999


Q ss_pred             cccccCcCCccCCC------CCCCCcEEEEccccCCCCCC
Q 035915          287 DATALVVGEDRLNL------ALHRPDFVLCNLDNTQNAQP  320 (344)
Q Consensus       287 DAaQa~~G~~~LDL------s~l~~DFvv~S~HK~l~G~P  320 (344)
                      |-+|+. |...-+-      .....|++++++=|. +|.+
T Consensus       203 Deah~~-gv~G~~g~G~~~~~~~~~~~~~~t~~ka-~g~~  240 (383)
T d1bs0a_         203 DDAHGT-GVIGEQGRGSCWLQKVKPELLVVTFGKG-FGVS  240 (383)
T ss_dssp             ECTTTT-TTSSGGGCCHHHHTTCCCSEEEEESSST-TSSC
T ss_pred             ecceee-eecCCcccchHHHcCCcccccccccccc-cccc
Confidence            999999 8665442      235789999999998 8754

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.1e-07  Score=89.26  Aligned_cols=188  Identities=11%  Similarity=-0.023  Sum_probs=121.3

Q ss_pred             cccchHHHHHHhhccCCCChhh-hhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCc
Q 035915          131 RTQLEPSRLLDILTKKSSFPGS-FISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGE  209 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~g~-~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH  209 (344)
                      .+++..+.+..+-.+..++... ......++..+.+|+|+|.+    .+++++++++|+..++..+. .+++.|+.....
T Consensus        64 v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e----~al~~~SG~~An~~~i~~l~-~~~d~i~~d~~~  138 (401)
T d1fc4a_          64 LIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME----DAILYSSCFDANGGLFETLL-GAEDAIISDALN  138 (401)
T ss_dssp             HHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHTTHHHHC-CTTCEEEEETTC
T ss_pred             HHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCC----ceEEecchhhhhHHHHHHhc-CCCcEEEeCCcc
Confidence            4555556665543333222211 13456688999999999984    58899999999888777763 578887765554


Q ss_pred             CHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcC-CCCCeeEEEEeCcc-c-cccccHHHHHH-HHhCCcEEE
Q 035915          210 ELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKC-KHTPKGLFSYPADI-N-GTRYSMHWISE-AHRNSWHVL  285 (344)
Q Consensus       210 ~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~-~~~~t~LVa~~avS-N-G~i~Pl~~Ia~-ar~~g~~vl  285 (344)
                      |.. +..-+...++++..++..      |.+++++++.... ....+.++++..+. + |.+.|++++.+ ++++|+.++
T Consensus       139 h~s-~~~G~~~~~a~~~~~~~~------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~Li  211 (401)
T d1fc4a_         139 HAS-IIDGVRLCKAKRYRYANN------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVM  211 (401)
T ss_dssp             CHH-HHHHHHTSCSEEEEECTT------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEE
T ss_pred             hHH-HHccccccCceEEEEcCC------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEE
Confidence            422 222234457777776643      3445554443210 11235677777765 4 99999988865 589999999


Q ss_pred             ecccccCcCCccCCCC--------CCCCcEEEEccccCCCCCCCceEEEEEeCCCc
Q 035915          286 LDATALVVGEDRLNLA--------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       286 vDAaQa~~G~~~LDLs--------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~  333 (344)
                      +|.+|+. |..--+-.        .-++|++++++.|. ||++ +.|++..+++..
T Consensus       212 vDeah~~-g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka-~gg~-~Gg~v~g~~~~~  264 (401)
T d1fc4a_         212 VDDSHAV-GFVGENGRGSHEYCDVMGRVDIITGTLGKA-LGGA-SGGYTAARKEVV  264 (401)
T ss_dssp             EECTTTT-TTSSTTSCCHHHHTTCTTCCSEEEEESSST-TCSS-SCEEEEECHHHH
T ss_pred             ehhhhcc-ccccCCCCccchhccCCCCCeEEEeecccc-cccC-CcccccCCHHHH
Confidence            9999998 76543211        13699999999999 8755 345555555443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=4.1e-08  Score=94.89  Aligned_cols=179  Identities=12%  Similarity=0.023  Sum_probs=112.0

Q ss_pred             hhccCCCChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC--------CCCCCeEEEcCCcCHHH
Q 035915          142 ILTKKSSFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP--------FFRGNFYMTIIGEELDY  213 (344)
Q Consensus       142 ~L~gnss~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~--------~~~Gd~ivS~~eH~~~~  213 (344)
                      +..+...|.+..   .+.+.++++++++|.+    .++|++++|+|+.+++..+.        ...+..+.....|+...
T Consensus        63 ~~~gd~~Y~~~~---~~~~le~~~a~l~G~~----~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~  135 (467)
T d2v1pa1          63 MMRGDEAFSGSR---SYYALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT  135 (467)
T ss_dssp             TTSCCCCSSSCH---HHHHHHHHHHHHTCCS----EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred             ccccchhhcCCc---hHHHHHHHHHHHHCCC----EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc
Confidence            334544444322   3345567899999984    48999999999887766541        12233344344444221


Q ss_pred             HHHHHHcCCcEEEEEeCCC---------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc---cccccHHHH---HH-H
Q 035915          214 VREFASFKESKVILAPEAW---------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN---GTRYSMHWI---SE-A  277 (344)
Q Consensus       214 ir~la~~~G~kV~~vp~~~---------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN---G~i~Pl~~I---a~-a  277 (344)
                       ...+...|+++..++.+.         ..+.++.++|++.+++... ..+.++++...+|   |..+|++.+   .+ |
T Consensus       136 -~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia  213 (467)
T d2v1pa1         136 -QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVPYIVATITSNSAGGQPVSLANLKAMYSIA  213 (467)
T ss_dssp             -HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG-GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred             -HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCc-cccceeeecceeeccccccCCHHHHHHHHHHH
Confidence             222344688888776542         1356889999998875321 2356777765554   677776544   33 5


Q ss_pred             HhCCcEEEecccccCcCCccCC-----------CC------CCCCcEEEEccccCCCCCCCceEEEEEeCCC
Q 035915          278 HRNSWHVLLDATALVVGEDRLN-----------LA------LHRPDFVLCNLDNTQNAQPSKITCLLIRKKS  332 (344)
Q Consensus       278 r~~g~~vlvDAaQa~~G~~~LD-----------Ls------~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~  332 (344)
                      +++|+++|+|+||++ |.....           +.      -..+|.+++|.||. +++| +-|++..+++.
T Consensus       214 ~~~g~~l~~D~a~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~-~~~~-~gg~i~~~~~~  282 (467)
T d2v1pa1         214 KKYDIPVVMDSARFA-ENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD-AMVP-MGGLLCMKDDS  282 (467)
T ss_dssp             HHTTCCEEEECTTHH-HHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST-TCCS-SCEEEEECSGG
T ss_pred             HHcCCEEEEechhhh-ccccccccccccccCCcccccchhhcccCCEEEecCCCC-CCCC-CceeEEecchh
Confidence            899999999999986 532110           00      12489999999998 7767 44666666543

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=98.69  E-value=5e-08  Score=93.44  Aligned_cols=170  Identities=8%  Similarity=0.011  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHcC--------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          159 IQARNKVLKHCG--------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       159 e~AR~~IA~~Lg--------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      .+.|+.||++++        ++|+  +|++|+|+|+|+.+++.++ ..+||.|+ ..-.++.. ...+....|++++.++
T Consensus        87 ~~LR~aiA~~l~~~~~~~~~~~pe--~I~it~G~~~al~~~~~~l-~~pGd~Vlv~~P~y~~~-~~~~~~~~g~~~v~v~  162 (431)
T d1m7ya_          87 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPGF-DRDLKWRTGVEIVPIH  162 (431)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTTH-HHHTTTTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcc--eEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCchhH-HHHHHHhcCceecccc
Confidence            457888888753        4555  7999999999999999988 47899865 33334311 1222223588888888


Q ss_pred             CCCCC-CccCHHHHHHHhhhc-CCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccC
Q 035915          230 EAWLD-LRIKGSQLSQYFRRK-CKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRL  298 (344)
Q Consensus       230 ~~~~~-g~i~~~~L~~~l~~~-~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~L  298 (344)
                      .+..+ ..++.+.+++.+... ....+++++.++.-+|  |..++.+.+.    .|+++++++++|-+.+..   +...+
T Consensus       163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~  242 (431)
T d1m7ya_         163 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI  242 (431)
T ss_dssp             CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred             ccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCC
Confidence            76432 347778777766431 1223577777776566  9999975543    357899999999987631   10111


Q ss_pred             CCC----CCC---------CcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          299 NLA----LHR---------PDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       299 DLs----~l~---------~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      ++.    +..         --+++.|+-|. ||.|. .+|+++..++..
T Consensus       243 s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~-~~~~G~RiG~~~~~~~~i  290 (431)
T d1m7ya_         243 SVMEVLKDRNCDENSEVWQRVHVVYSLSKD-LGLPGFRVGAIYSNDDMV  290 (431)
T ss_dssp             CHHHHTTTTTCSSSSSGGGGEEEEEESSSS-SCCGGGCEEEEEESCHHH
T ss_pred             CHHHHhhhcccccccccCceEEEEecCccc-ccCCCCccceeccchhhh
Confidence            110    000         12778899999 88672 489988876543

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=98.68  E-value=1.4e-07  Score=87.18  Aligned_cols=160  Identities=11%  Similarity=0.037  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          159 IQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       159 e~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      .+.|+.||+++|++++  .|+.|+|+++++.++...+.  .++.++..-.+..  ........+++++.+|.+..++...
T Consensus        60 ~~Lr~aia~~~~v~~~--~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  133 (355)
T d1lc5a_          60 FHLHQALARHHQVPAS--WILAGNGETESIFTVASGLK--PRRAMIVTPGFAE--YGRALAQSGCEIRRWSLREADGWQL  133 (355)
T ss_dssp             HHHHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTH--HHHHHHHTTCEEEEEECCGGGTTCC
T ss_pred             HHHHHHHHHHhCCCHH--HEEecccHHHHHHHHHhhhc--cccccccCCccce--eccccccccccceeeeeeccCCccc
Confidence            3589999999999876  79999999999998877653  3333332222332  1122333578888888764433333


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCcc--C-C-CCCCCCcEE
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDR--L-N-LALHRPDFV  308 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~--L-D-Ls~l~~DFv  308 (344)
                      .+.+.+.+.+     +++++.++--+|  |..++.+.+.    .++++++++++|-+..-.....  . . ....+-.++
T Consensus       134 ~~~~~~~~~~-----~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~  208 (355)
T d1lc5a_         134 TDAILEALTP-----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWV  208 (355)
T ss_dssp             CTTHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEE
T ss_pred             eeeeeecccc-----ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccccccccee
Confidence            3445555543     466777764455  9999976554    3478999999998876311111  1 1 112234589


Q ss_pred             EEccccCCCCCCCc--eEEEEEeCC
Q 035915          309 LCNLDNTQNAQPSK--ITCLLIRKK  331 (344)
Q Consensus       309 v~S~HK~l~G~P~G--iG~L~Vr~~  331 (344)
                      +.|+-|+ ||.| |  +|.++..++
T Consensus       209 ~~S~SK~-~~l~-GlR~G~~i~~~~  231 (355)
T d1lc5a_         209 LRSLTKF-YAIP-GLRLGYLVNSDD  231 (355)
T ss_dssp             EEESTTT-TTCT-TTCCEEEECCCH
T ss_pred             ecccccc-cccc-cccccceeccch
Confidence            9999999 8867 5  798887654

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.64  E-value=3.4e-07  Score=86.42  Aligned_cols=164  Identities=13%  Similarity=0.098  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHc------------CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEE
Q 035915          159 IQARNKVLKHC------------GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKV  225 (344)
Q Consensus       159 e~AR~~IA~~L------------ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV  225 (344)
                      .+.|+.||+++            +++++  +|++|+|+++|+.+++.++ ..+||.|+ ..-.++.  ....++..|+++
T Consensus        75 ~~LReaia~~~~~~~~~~~~~~~~~~~~--~I~it~G~~~al~~~~~~l-~~~Gd~Vlv~~P~y~~--~~~~~~~~G~~~  149 (412)
T d1bw0a_          75 PEAREAVATWWRNSFVHKEELKSTIVKD--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPH--YETVCKAYGIGM  149 (412)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTTGGGCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhcCcccccCCCCCCC--eEEEecccccchhhhhhhh-hccccceeeeeccchh--hhhhhhccCccc
Confidence            34677787765            24555  7999999999999999887 57899864 3333432  233455579999


Q ss_pred             EEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CC
Q 035915          226 ILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GE  295 (344)
Q Consensus       226 ~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~  295 (344)
                      +.+|.+.. +...+.++|++...+     .++++.++.-+|  |+.++.+.+.    .+++++++++.|-+..-.   |.
T Consensus       150 ~~v~~~~~~~~~~~~~~l~~~~~~-----~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~  224 (412)
T d1bw0a_         150 HFYNCRPENDWEADLDEIRRLKDD-----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGK  224 (412)
T ss_dssp             EEEEEEGGGTTEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSS
T ss_pred             cccccccccccchhhHHHHhhhhc-----cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCC
Confidence            99887542 234677888777654     467777765555  9999986553    347889999999876521   11


Q ss_pred             ccC-------CCCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          296 DRL-------NLALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       296 ~~L-------DLs~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      .+.       ++.....=+++.|+-|. |+.|- .+|.+++.+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~s~SK~-~~~~G~RvG~~~~~~~~~  269 (412)
T d1bw0a_         225 DPNATFTSVADFETTVPRVILGGTAKN-LVVPGWRLGWLLYVDPHG  269 (412)
T ss_dssp             CTTCCCCCTTSSCCSCCEEEEEESTTT-TSCGGGCCEEEEEECTTC
T ss_pred             CCccccccccccccccccccccccCcc-CccCCCCcccccccchhh
Confidence            111       11111223566678898 77662 489998876544

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.63  E-value=1.8e-07  Score=87.91  Aligned_cols=167  Identities=13%  Similarity=0.116  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHcC------CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          158 EIQARNKVLKHCG------LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       158 le~AR~~IA~~Lg------a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      ..+.|+.||++++      ++++  +|++|+|+++++.++..++ ..+|+.++. .-.+..  ....+...|+++..+|.
T Consensus        73 ~~~lR~aia~~l~~~~g~~~~~~--~I~it~G~~~al~~~~~~l-~~~gd~v~~~~P~y~~--~~~~~~~~g~~~~~v~~  147 (403)
T d1wsta1          73 FTPLRLALARWMEKRYDIPMSKV--EIMTVAGSQQALDLIGRVF-LNPGDPIVVEAPTYLA--AIQAFKYYDPEFISIPL  147 (403)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCTTC--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHH--HHHHHHTTCCEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChH--HeeecccchHHHHHHHHHH-hhcCCccccCCCcchh--hhHHHhhccccceeEee
Confidence            3447777777753      5555  7999999999999999987 468988653 333331  23334567899988887


Q ss_pred             CCCCCccCHHHHHH---HhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CC--c
Q 035915          231 AWLDLRIKGSQLSQ---YFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GE--D  296 (344)
Q Consensus       231 ~~~~g~i~~~~L~~---~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~--~  296 (344)
                      +....  +...+..   ...... ...+.++.++.-+|  |..++.+.+.    .|+++++++++|-+..-.   +.  .
T Consensus       148 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~  224 (403)
T d1wsta1         148 DDKGM--RVDLLEEKLEELRKQG-KRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTP  224 (403)
T ss_dssp             ETTEE--CHHHHHHHHHHHHHTT-CCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred             cccCC--ccccccccchhhhhcc-ccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCC
Confidence            64321  2222221   111111 12344555555556  9999996543    358899999999877520   11  1


Q ss_pred             cC-CCCCCCCcEEEEccccCCCCCC-CceEEEEEeCCCcc
Q 035915          297 RL-NLALHRPDFVLCNLDNTQNAQP-SKITCLLIRKKSFD  334 (344)
Q Consensus       297 ~L-DLs~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~~  334 (344)
                      ++ .+...+..+++.|+.|+ ++ | -.+|.++..++..+
T Consensus       225 ~~~~~~~~~~~i~~~S~SK~-~~-~G~RiG~~i~~~~~i~  262 (403)
T d1wsta1         225 PIKHFDDYGRVIYLGTFSKI-LA-PGFRIGWVAAHPHLIR  262 (403)
T ss_dssp             CGGGGCSSSCEEEEEESTTT-TC-GGGCCEEEEECHHHHH
T ss_pred             cccccCCCCcEEEEccccce-ec-CcccccccccchHHHH
Confidence            11 12234567899999999 76 6 36888888665443

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.61  E-value=1.5e-07  Score=92.76  Aligned_cols=169  Identities=14%  Similarity=0.009  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEe-CCHHHHHHHHHhhCCCCCCCeEEE-cCC---cCHHH-HHHH--HHcCCc--E
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFT-PNYRDAMMLVGESYPFFRGNFYMT-IIG---EELDY-VREF--ASFKES--K  224 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFT-snaTeAlnlva~sl~~~~Gd~ivS-~~e---H~~~~-ir~l--a~~~G~--k  224 (344)
                      .+...-|+++..++||++..++.|=.= -+++.|+..|..++ +++||.|++ .++   |-+.. ....  ....|.  +
T Consensus        72 D~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al-l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~  150 (463)
T d2a7va1          72 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFE  150 (463)
T ss_dssp             THHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-CCSCEECCC----------------------------
T ss_pred             HHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH-cCCCceEEeeccCcCcccccccccccccccceeeEee
Confidence            334467899999999998765444332 47788888888887 689998763 222   21211 1000  011122  2


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC-
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL-  302 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~-  302 (344)
                      +....++..++.||.+++++...+.    +++|+.+...+.-...|++.+++ |++.|+++++|++|.+ |.+.=.+-. 
T Consensus       151 ~~~Y~~d~~~~~IDyd~~~~~a~~~----kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~a-GLIA~g~~~s  225 (463)
T d2a7va1         151 SMPYKLNPKTGLIDYNQLALTARLF----RPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHIS-GLVAAKVIPS  225 (463)
T ss_dssp             ---CCBCTTTCSBCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGH-HHHHTTSSCC
T ss_pred             eeeeeccCCCCcCcHHHHHHHHhhc----CCceEEecccccccccCHHHHHHHhhcccceEEechhhhh-HHhhhhhhcC
Confidence            3333445556789999999887763    46788888655688899988876 5889999999999997 754322211 


Q ss_pred             --CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          303 --HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                        -.+|++++|-||. |.||+ -|+++.+++
T Consensus       226 P~~~aDvvt~tTHKT-lrGPr-gGiIl~~~~  254 (463)
T d2a7va1         226 PFKHADIVTTTTHKT-LRGAR-SGLIFYRKG  254 (463)
T ss_dssp             GGGTCSEEEEESSGG-GCSCS-CEEEEEECS
T ss_pred             hhhhhhhhhchhhhh-hcCCC-ceEEEEccc
Confidence              1479999999999 77797 466666663

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.60  E-value=8.5e-08  Score=93.08  Aligned_cols=171  Identities=14%  Similarity=-0.000  Sum_probs=116.4

Q ss_pred             hhhhhhHH-HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CC---cCHHHHHHHHHcCCcE
Q 035915          150 PGSFISIP-EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IG---EELDYVREFASFKESK  224 (344)
Q Consensus       150 ~g~~as~~-le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~e---H~~~~ir~la~~~G~k  224 (344)
                      .|-..-+. .+-|.+++.++||+.   |--|=--++|.|+..|..++ .++||.|++. +.   |-......-..-+..+
T Consensus        62 ~G~~~id~iE~la~~ra~~lF~a~---~anVqp~SGs~An~av~~al-l~pGD~im~l~l~~GGHlshg~~~~~~g~~~~  137 (405)
T d1kl1a_          62 GGCEYVDIVEELARERAKQLFGAE---HANVQPHSGAQANMAVYFTV-LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYN  137 (405)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCCS---EEECCCSSHHHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSE
T ss_pred             CCchhHHHHHHHHHHHHHHHhCCC---cceeeccCchHHHHHHHHHh-cCCCCEEEEeecccccccccCccccccceEEE
Confidence            34443344 467889999999984   22233357888888888888 6899998743 22   2111000000112356


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCC-
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLAL-  302 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~-  302 (344)
                      +...|++..++.||.+++++..+..    +++|+.+...+.-...|++.+++ +++.|+++++|++|.+ |.+-=.+-. 
T Consensus       138 ~~~y~~d~~~~~ID~d~l~~~a~~~----kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~-GLIa~g~~~~  212 (405)
T d1kl1a_         138 FVAYGVDPETHVIDYDDVREKARLH----RPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIA-GLVAAGLHPN  212 (405)
T ss_dssp             EEEECBCTTTCSBCHHHHHHHHHHH----CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTH-HHHHTTSSCC
T ss_pred             EEEeccchhcccccHHHHHHHHHhh----CcceEEecccccccccChHHHHHHHhhhCCEEecchhhHh-hhhhhhhcCC
Confidence            6667888777889999999988763    56788888655688889988876 5889999999999997 654222110 


Q ss_pred             --CCCcEEEEccccCCCCCCCceEEEEEeCC
Q 035915          303 --HRPDFVLCNLDNTQNAQPSKITCLLIRKK  331 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~  331 (344)
                        -.+|+++.|-||. |.||+| |+++.+++
T Consensus       213 P~~~aDvvt~tThKt-lrGPrg-g~I~~~~~  241 (405)
T d1kl1a_         213 PVPYAHFVTTTTHKT-LRGPRG-GMILCQEQ  241 (405)
T ss_dssp             STTTCSEEEEESSST-TCCCSC-EEEEECHH
T ss_pred             hhhhhhheecccccc-ccCCCC-ceEEecch
Confidence              2489999999999 777974 45555543

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.58  E-value=1.1e-06  Score=84.68  Aligned_cols=191  Identities=12%  Similarity=0.020  Sum_probs=118.2

Q ss_pred             CCCcCCCCCCcccccchHHHHHHhhccCCCCh-hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCC-
Q 035915          119 TPSFGSNLPDLDRTQLEPSRLLDILTKKSSFP-GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYP-  196 (344)
Q Consensus       119 ~~~~Ga~lp~~s~v~~~~~~L~~~L~gnss~~-g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~-  196 (344)
                      .+|.|-.- ....+++..+.+..+=.+...+. -.-.....++..+++|+|+|.+.   .++|.+|. .|+..++.++. 
T Consensus        53 ndYLGL~~-~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~---all~~sG~-~An~~~i~~l~~  127 (396)
T d2bwna1          53 NDYLGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA---ALVFSSAY-NANDATLSTLRV  127 (396)
T ss_dssp             SCTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE---EEEESCHH-HHHHHHHHHHHH
T ss_pred             ccccCcCC-CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc---eeeeecch-HHHHHHHHHHhc
Confidence            44555441 12345556666665433332211 11123456889999999999852   35555554 44444444442 


Q ss_pred             CCCCCeEEEcCCcCHHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH
Q 035915          197 FFRGNFYMTIIGEELDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI  274 (344)
Q Consensus       197 ~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I  274 (344)
                      ..+++.++.+-.+|.. +..-++..+++++..+-+      +.+++++.++... ..+.++|++..+-+  |.+.|+.++
T Consensus       128 ~~~~d~i~~D~~~Has-i~~g~~ls~a~~~~f~Hn------d~~~l~~l~~~~~-~~~~~~iv~egvySmdGd~apl~~l  199 (396)
T d2bwna1         128 LFPGLIIYSDSLNHAS-MIEGIKRNAGPKRIFRHN------DVAHLRELIAADD-PAAPKLIAFESVYSMDGDFGPIKEI  199 (396)
T ss_dssp             HSTTCEEEEETTCCHH-HHHHHHHSCCCEEEECTT------CHHHHHHHHHHSC-TTSCEEEEEESBCTTTCCBCCHHHH
T ss_pred             ccCCCceeehhhhhhc-cchhhhccccCceEeecc------hHHHhhhHHhhhc-ccCceeEEEEeeccCcccccccHhH
Confidence            2467888777766633 333344567888777644      3455666655322 23456777776653  999999877


Q ss_pred             HH-HHhCCcEEEecccccCcCCccCC---------CCCCCCcEEEEccccCCCCCCCceEEEEE
Q 035915          275 SE-AHRNSWHVLLDATALVVGEDRLN---------LALHRPDFVLCNLDNTQNAQPSKITCLLI  328 (344)
Q Consensus       275 a~-ar~~g~~vlvDAaQa~~G~~~LD---------Ls~l~~DFvv~S~HK~l~G~P~GiG~L~V  328 (344)
                      .+ ++++|+.++||-||++ |..--+         +. ..+|++++|+=|- ||   +.|++++
T Consensus       200 ~~L~~~y~~~L~vDeAHs~-Gv~G~~G~G~~~~~~~~-~~~di~~gTlsKa-~g---~~Gg~v~  257 (396)
T d2bwna1         200 CDIAEEFGALTYIDEVHAV-GMYGPRGAGVAERDGLM-HRIDIFNGTLAKA-YG---VFGGYIA  257 (396)
T ss_dssp             HHHHHHHTCEEEEECTTTT-TTSSTTSCCHHHHHTCG-GGCSEEEEESSST-TC---SCCEEEE
T ss_pred             HHHhhhhcceeeeccceee-eeeccccccchhhcCCc-eeeeeeeeccccc-cc---ccccccc
Confidence            65 5789999999999999 875322         22 3589999999999 88   4454444

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=6.7e-07  Score=79.07  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHH-HHHHHHHcCCcEEEEEeCCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELD-YVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~-~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      ...+.++++|+++|.+    .++||+|+|+|+.+++..+. ..|+.++ ....|... .....+...+..+..++.+.  
T Consensus        35 ~~~~le~~lA~~~G~~----~~~~~~sGt~A~~~al~a~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  107 (343)
T d1m6sa_          35 TINELERLAAETFGKE----AALFVPSGTMGNQVSIMAHT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN--  107 (343)
T ss_dssp             HHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEET--
T ss_pred             HHHHHHHHHHHHHCCC----eEEEeCCHHHHHHHHHHHHh-ccCCceeccccccceeeecccccccccceeecccccc--
Confidence            4577889999999974    58999999999888887763 5677754 34333211 11122333456666666543  


Q ss_pred             CccCHHHHHHHhhhcCCC-CCeeEEEEeC-ccc--cccccHHHHHH----HHhCCcEEEecccccCcCCccCCCC-----
Q 035915          235 LRIKGSQLSQYFRRKCKH-TPKGLFSYPA-DIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDRLNLA-----  301 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~-~~t~LVa~~a-vSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~LDLs-----  301 (344)
                      +..+.+.+...+....+. .++.++.+.. .+|  |.+.|++.+.+    ++++|+.+++|+++.. +.......     
T Consensus       108 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~-~~~~~~~~~~~~~  186 (343)
T d1m6sa_         108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIF-NASIASGVPVKEY  186 (343)
T ss_dssp             TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHH-HHHHHHCCCHHHH
T ss_pred             CccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccc-ccccccccchhhh
Confidence            567888888888654322 2345555553 334  77778865543    3789999999999986 54332221     


Q ss_pred             CCCCcEEEEccccCCCCCCCceEEEEEeC
Q 035915          302 LHRPDFVLCNLDNTQNAQPSKITCLLIRK  330 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~  330 (344)
                      ....+..+++.+|. .++. +.|+.+..+
T Consensus       187 ~~~~~~~~~~~~~~-~~g~-~~~~~~~~~  213 (343)
T d1m6sa_         187 AGYADSVMFCLSKG-LCAP-VGSVVVGDR  213 (343)
T ss_dssp             HHTCSEEEEESSST-TCCS-SCEEEEECH
T ss_pred             cccccccccccccc-cccc-ccccccccH
Confidence            12467777777777 5545 344444433

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.57  E-value=4.8e-06  Score=80.34  Aligned_cols=177  Identities=10%  Similarity=-0.013  Sum_probs=121.2

Q ss_pred             HHHHHHhhccC-C-CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC-cC--
Q 035915          136 PSRLLDILTKK-S-SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG-EE--  210 (344)
Q Consensus       136 ~~~L~~~L~gn-s-s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e-H~--  210 (344)
                      .+.+.+...++ . ...++...-..+..-+++|.+-|+.    ..+.++++..|+..++.++ .++||+++..-. +.  
T Consensus        41 ~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~----~a~~~sSGmaAi~~~l~~l-l~~Gd~vi~~~~~Yg~t  115 (397)
T d1y4ia1          41 AEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE----AGLATASGISAITTTLLTL-CQQGDHIVSASAIYGCT  115 (397)
T ss_dssp             HHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSSCHHH
T ss_pred             HHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCc----cceeehHHHHHHHHHHhhc-cCCCCeeeeeccccccc
Confidence            44555544444 2 2244554455666777899998874    2455667777877777666 478999764433 33  


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEec
Q 035915          211 LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLD  287 (344)
Q Consensus       211 ~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvD  287 (344)
                      ...+..+..+.|+++..++..      +.+.+++++++     +|+||-+-.-+|  ..+.||+.|++ +|++|+.++||
T Consensus       116 ~~~~~~~l~~~Gi~~~~vd~~------d~~~~~~~i~~-----~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvD  184 (397)
T d1y4ia1         116 HAFLSHSMPKFGINVRFVDAG------KPEEIRAAMRP-----ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD  184 (397)
T ss_dssp             HHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             chhhhcccCCCceEeeccCCC------CHHHHHHhcCC-----CCcEEEecCCcccceeecccHHHHHHhhcCCceEEec
Confidence            233445566789999988643      46788888875     589998887777  99999987765 69999999999


Q ss_pred             ccccCc-CCccCCCCCCCCcEEEEccccCCCCCCC--ceEEEEEeCCC
Q 035915          288 ATALVV-GEDRLNLALHRPDFVLCNLDNTQNAQPS--KITCLLIRKKS  332 (344)
Q Consensus       288 AaQa~~-G~~~LDLs~l~~DFvv~S~HK~l~G~P~--GiG~L~Vr~~~  332 (344)
                      .+-+-| ...|++   +++|+++-|+=|+ ++|=.  =.|+++.+++.
T Consensus       185 nT~atP~~~~Pl~---~GaDivihS~TKy-i~Ghsdvl~G~v~~~~~~  228 (397)
T d1y4ia1         185 NTFMSPYCQQPLQ---LGADIVVHSVTKY-INGHGDVIGGIIVGKQEF  228 (397)
T ss_dssp             CTTTCTTTCCGGG---GTCSEEEEETTTT-TTCSSCCCCEEEEECHHH
T ss_pred             CcccCcccCcchh---cCCCEEEEehhhh-cCCCcceeeeccCCCHHH
Confidence            997651 233443   5899999999999 66532  24666666543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.6e-07  Score=91.43  Aligned_cols=166  Identities=12%  Similarity=-0.026  Sum_probs=112.6

Q ss_pred             hhhhhhHH-HHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC---HHHHHHHHHcCCcE
Q 035915          150 PGSFISIP-EIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE---LDYVREFASFKESK  224 (344)
Q Consensus       150 ~g~~as~~-le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~---~~~ir~la~~~G~k  224 (344)
                      .|-+.-+. ..-|+++..++||+.-   --|=.-+++.|+..+..++ +++||.|++ ...|.   ......-+..+..+
T Consensus        65 ~G~~~iD~iE~la~~ra~~lF~a~~---anVqp~SGs~AN~av~~Al-l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~  140 (416)
T d1dfoa_          65 GGCEYVDIVEQLAIDRAKELFGADY---ANVQPHSGSQANFAVYTAL-LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYN  140 (416)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHH-CCTTCEEEEECTTTTCCGGGTCTTSHHHHHSE
T ss_pred             CCChhHHHHHHHHHHHHHHHhCCCc---ceeecccCccHHHHHHHHh-cCCCCeeeeccccccccccccccccccCceEE
Confidence            34433343 4678899999999942   2233457777887787777 689999874 33332   11100001112355


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccccccccHHHHHH-HHhCCcEEEecccccCcCCccCC----
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADINGTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLN----  299 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSNG~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LD----  299 (344)
                      +...+++. ++.||.+++++.....    +++|+.+...+.....|++.+++ |++.|+++++|++|.. |.+--.    
T Consensus       141 ~~~y~~d~-~~~IDyd~l~~~a~~~----kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~-GLIa~g~~~s  214 (416)
T d1dfoa_         141 IVPYGIDA-TGHIDYADLEKQAKEH----KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVA-GLVAAGVYPN  214 (416)
T ss_dssp             EEEECBCS-SSSBCHHHHHHHHHHH----CCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTH-HHHHHTSSCC
T ss_pred             EEecccCC-ccCccHHHHHHHHHHh----ccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhh-cceeccccCC
Confidence            56666665 5789999999887753    46788888544599999998876 5899999999999997 654222    


Q ss_pred             -CCCCCCcEEEEccccCCCCCCCceEEEEEe
Q 035915          300 -LALHRPDFVLCNLDNTQNAQPSKITCLLIR  329 (344)
Q Consensus       300 -Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr  329 (344)
                       |.  .+|+++.|.||. |.||+| |+++.+
T Consensus       215 P~~--~aDvvt~tThKt-lrGPrg-giI~~~  241 (416)
T d1dfoa_         215 PVP--HAHVVTTTTHKT-LAGPRG-GLILAK  241 (416)
T ss_dssp             CTT--TSSEEEEESSST-TCCCSC-EEEEES
T ss_pred             ccc--ccceeeeehhhc-ccCCCc-eEEEec
Confidence             22  379999999999 777964 555555

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.44  E-value=1.4e-06  Score=82.22  Aligned_cols=160  Identities=13%  Similarity=0.050  Sum_probs=104.6

Q ss_pred             HHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          160 QARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       160 ~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      +.|+.|++++    |.+-+..+|++|+|+++++.+++.++ ..+||.++ ..-.++  .....++..|.+++.+|.... 
T Consensus        74 ~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~-~~~Gd~vlv~~P~y~--~~~~~~~~~g~~~v~v~~~~~~  150 (395)
T d1xi9a_          74 ELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LDPGDEILVPGPSYP--PYTGLVKFYGGKPVEYRTIEEE  150 (395)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCH--HHHHHHHHTTCEEEEEEEEGGG
T ss_pred             HHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh-cCCCCEEEEcCCccc--cchhhhhhcCCEEEEEeccccc
Confidence            3555555554    54322237999999999999999887 46888865 232332  123345567999888875322 


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc-----cCCCCC
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED-----RLNLAL  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~-----~LDLs~  302 (344)
                      +..++.+++.+.+.+     +++++.++.-+|  |..++.+.+.    .+++++++++.|.+..-.-..     +..+..
T Consensus       151 ~~~~d~~~~~~~~~~-----~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  225 (395)
T d1xi9a_         151 DWQPDIDDIRKKITD-----RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK  225 (395)
T ss_dssp             TSEECHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred             cccchHHHHHHhhcc-----cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC
Confidence            345788888887764     467777775566  9999996554    347899999999977531110     011111


Q ss_pred             CCCcEEEEccccCCCCCCCc--eEEEEEe
Q 035915          303 HRPDFVLCNLDNTQNAQPSK--ITCLLIR  329 (344)
Q Consensus       303 l~~DFvv~S~HK~l~G~P~G--iG~L~Vr  329 (344)
                      ..-=+++.|+-|. |+.| |  +|.+++.
T Consensus       226 ~~~vi~~~S~SK~-~~~~-GlRvG~~~~~  252 (395)
T d1xi9a_         226 DVPVIVMNGLSKV-YFAT-GWRLGYMYFV  252 (395)
T ss_dssp             SSCEEEEEESTTT-TCCG-GGCCEEEEEE
T ss_pred             CCCEEEEeCcchh-cccc-hhhcEeeEec
Confidence            1112777899998 8867 6  8988764

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=98.41  E-value=1.3e-06  Score=82.85  Aligned_cols=163  Identities=10%  Similarity=-0.051  Sum_probs=106.2

Q ss_pred             HHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCC
Q 035915          160 QARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAW  232 (344)
Q Consensus       160 ~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~  232 (344)
                      +.|+.||+++    |.  +|.+ +|+.|+|+++|+.+++.++ ..+|+.++ ..-.++.  ....+...|.+++.++.+.
T Consensus        70 ~lReaiA~~~~~~~g~~~~p~~-~I~it~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~--~~~~~~~~g~~~~~v~~~~  145 (418)
T d2r5ea1          70 RLVQALSKLYSQLVDRTINPMT-EVLVTVGAYEALYATIQGH-VDEGDEVIIIEPFFDC--YEPMVKAAGGIPRFIPLKP  145 (418)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTT-SEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECEE
T ss_pred             HHHHHHHHHHHHHhCCCCCccc-eEEEcCCCchhhhhhhhhc-cccccceeccccccch--hhHHHHHcCCeEEEEEecc
Confidence            4566666654    54  3423 7999999999999999988 46899864 3434442  2333455688888887653


Q ss_pred             CC---------CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc-
Q 035915          233 LD---------LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED-  296 (344)
Q Consensus       233 ~~---------g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~-  296 (344)
                      .+         ...+.+++......     +++++.++.-+|  |..++-+.+.    .+++++++++.|.+... -.. 
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~-~~~~  219 (418)
T d2r5ea1         146 NKTGGTISSADWVLDNNELEALFNE-----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFE  219 (418)
T ss_dssp             SCCSSCEEGGGEECCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCT
T ss_pred             cccccchhhhhhhhhHHHHhhhhhc-----cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhh-hccC
Confidence            21         12455556555433     577888776666  9999996543    35789999999998864 211 


Q ss_pred             c---C---CCCC-CCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          297 R---L---NLAL-HRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       297 ~---L---DLs~-l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      +   .   .+.. ..--.++.|+=|. |+.|- .+|.++..++..
T Consensus       220 ~~~~~s~~~~~~~~~~~i~~~S~SK~-~~~pGlRiG~~~~~~~~i  263 (418)
T d2r5ea1         220 PFEHIRICTLPGMWERTITIGSAGKT-FSLTGWKIGWAYGPEALL  263 (418)
T ss_dssp             TCCCCCGGGSTTTGGGEEEEEEHHHH-TTCGGGCCEEEESCHHHH
T ss_pred             CCccccccccccccceeeeeecCCcc-ccCCCcccccccccchhh
Confidence            1   1   1111 1233677799999 88672 589988766544

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=1.2e-06  Score=82.85  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHc----C---CCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          159 IQARNKVLKHC----G---LPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       159 e~AR~~IA~~L----g---a~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+.|+.||+++    |   ++++  +|++|+|+++|+.+++..+ ..+||.++. .-.+. . ....++..|++++.+|.
T Consensus        83 ~~LR~aia~~~~~~~g~~~~~~~--~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~-~-~~~~~~~~g~~~~~~~~  157 (420)
T d1vp4a_          83 PVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYL-G-AINAFRQYLANFVVVPL  157 (420)
T ss_dssp             HHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCH-H-HHHHHHTTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCHH--HeEeccchhhhHHHHHHhh-hcccccccccccccc-c-hhHHHHHHhhhcccccc
Confidence            44677777665    3   3444  7999999999999999887 468998653 33322 1 23445667999999998


Q ss_pred             CCCCCccCHHHHHHHhhh---cCC-CCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcC--Ccc-
Q 035915          231 AWLDLRIKGSQLSQYFRR---KCK-HTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVG--EDR-  297 (344)
Q Consensus       231 ~~~~g~i~~~~L~~~l~~---~~~-~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G--~~~-  297 (344)
                      +..  .++.+.+...+..   ..+ ...+.++.++.-+|  |..++.+.+.    .|+++++++++|-+..-..  ... 
T Consensus       158 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~  235 (420)
T d1vp4a_         158 EDD--GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETV  235 (420)
T ss_dssp             ETT--EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCC
T ss_pred             ccc--ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccc
Confidence            753  3566666544321   111 12345666665556  9999885443    3589999999999765300  000 


Q ss_pred             ---CCCCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          298 ---LNLALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       298 ---LDLs~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                         ......+.-+++.++-|+ ++ |. .+|.++..++..+
T Consensus       236 ~~~~~~~~~~~~i~~~s~sk~-~~-~G~RiG~~~~~~~~i~  274 (420)
T d1vp4a_         236 DPIFKIGGPERVVLLNTFSKV-LA-PGLRIGMVAGSKEFIR  274 (420)
T ss_dssp             CCHHHHHCTTTEEEEEESTTT-TC-GGGCEEEEECCHHHHH
T ss_pred             ccccccccccceeEEeccccc-cc-cccccccccccchhhh
Confidence               011123455777888887 54 62 5888877665443

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.5e-05  Score=73.93  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHc----CC--CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCC
Q 035915          159 IQARNKVLKHC----GL--PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEA  231 (344)
Q Consensus       159 e~AR~~IA~~L----ga--~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~  231 (344)
                      .+.|+.||+++    |+  +++  +|++|+|+++++.+++..+ ..+|+.++ ..-.+..  ...++...|+++..++.+
T Consensus        67 ~~LR~aia~~~~~~~g~~~~~~--~I~it~G~~~~l~~~~~~l-~~~gd~V~i~~P~y~~--~~~~~~~~g~~~~~~~~~  141 (389)
T d2gb3a1          67 WELREAFASYYKRRQRVDVKPE--NVLVTNGGSEAILFSFAVI-ANPGDEILVLEPFYAN--YNAFAKIAGVKLIPVTRR  141 (389)
T ss_dssp             HHHHHHHHHHHHHTSCCCCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTH--HHHHHHHHTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCcccc--eEEeccccccccccccccc-ccCCCeEEEeCCCCcc--ccccccccCccccccccc
Confidence            34666666655    54  454  7999999999999999887 46788864 2222331  222334458888888876


Q ss_pred             CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCcc--CC-C-C
Q 035915          232 WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDR--LN-L-A  301 (344)
Q Consensus       232 ~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~--LD-L-s  301 (344)
                      ..+.....+.+.....+     +++++.++.-+|  |..++.+.+.    .|++++++++.|-+..-....+  .. + .
T Consensus       142 ~~~~~~~~~~~~~~~~~-----~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  216 (389)
T d2gb3a1         142 MEEGFAIPQNLESFINE-----RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI  216 (389)
T ss_dssp             GGGTSCCCTTGGGGCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS
T ss_pred             cccccchhhhhhhhccc-----CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccc
Confidence            54333344444443332     577888775556  9999986554    3588999999998775311111  00 1 1


Q ss_pred             CCCCcEEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          302 LHRPDFVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                      ..+-.+++.|+-|. ++.|. .+|.++..++
T Consensus       217 ~~~~~~v~~s~sK~-~~~~GlRiG~~~~~~~  246 (389)
T d2gb3a1         217 ESDKVVVIDSVSKK-FSACGARVGCLITRNE  246 (389)
T ss_dssp             CCTTEEEEEESTTT-TTCGGGCCEEEECSCH
T ss_pred             cccccccccccccc-ccCcccceeeeeccch
Confidence            12346788888898 88772 3798887654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.6e-06  Score=82.28  Aligned_cols=165  Identities=11%  Similarity=0.054  Sum_probs=103.8

Q ss_pred             HHHHHHHHHc----CCCCC-CCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcCHHHHHHHHHcCCcEEEEEeCCC-
Q 035915          160 QARNKVLKHC----GLPDD-EYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEELDYVREFASFKESKVILAPEAW-  232 (344)
Q Consensus       160 ~AR~~IA~~L----ga~p~-ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~~~~ir~la~~~G~kV~~vp~~~-  232 (344)
                      +.|+.||+++    |.+-+ ..+|++|+|+++|+.+++..+ ..+|+.++. .-..+.  ...++...|.+++.++... 
T Consensus        68 ~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-~~~g~~vlv~~p~~~~--y~~~~~~~g~~~v~~~~~~~  144 (418)
T d1w7la_          68 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VDEGDEVIIIEPFFDC--YEPMTMMAGGRPVFVSLKPG  144 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh-ccCCceeeccccccch--hHHHHHHcCCEeeccccccc
Confidence            3555556554    65422 237999999999999999988 467888653 222221  2233445688877766431 


Q ss_pred             ----------CCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---
Q 035915          233 ----------LDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---  293 (344)
Q Consensus       233 ----------~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---  293 (344)
                                .+..++..++....++     .++++.++.-+|  |..++.+.+.    .|++++++++.|.+..-.   
T Consensus       145 ~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~  219 (418)
T d1w7la_         145 PIQNGELGSSSNWQLDPMELAGKFTS-----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYD  219 (418)
T ss_dssp             C---CCSEEGGGEECCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred             cccccccccccCcccchhhhhccccc-----cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcC
Confidence                      1123455555544433     577777776666  9999886553    347899999999986431   


Q ss_pred             CCccCC---CCCC-CCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          294 GEDRLN---LALH-RPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       294 G~~~LD---Ls~l-~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      +.....   +... +--+++.|+-|. |+.|. .+|.+++.++..
T Consensus       220 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~pG~RvG~~v~~~~~~  263 (418)
T d1w7la_         220 GHQHISIASLPGMWERTLTIGSAGKT-FSATGWKVGWVLGPDHIM  263 (418)
T ss_dssp             TCCCCCGGGSTTTGGGEEEEEEHHHH-TTCGGGCCEEEECCHHHH
T ss_pred             CCCCCCHHHccccccccceecccCcc-ccCCCCcccccccchhhh
Confidence            111122   2222 235889999998 77773 689998766543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.28  E-value=2.1e-05  Score=75.25  Aligned_cols=159  Identities=15%  Similarity=0.026  Sum_probs=110.3

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC-cC--HHHHHHHHHcCCcEEEEE
Q 035915          152 SFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG-EE--LDYVREFASFKESKVILA  228 (344)
Q Consensus       152 ~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e-H~--~~~ir~la~~~G~kV~~v  228 (344)
                      |...-..+...+++|.+=|+.   +.++|.||. .|+..+.. + +++|++++..-. +.  ...++.+..+.|+++..+
T Consensus        45 R~~nPt~~~le~~la~LE~~~---~a~~fsSGM-aAisall~-l-l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~  118 (380)
T d1ibja_          45 RSGNPTRDALESLLAKLDKAD---RAFCFTSGM-AALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV  118 (380)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred             CCCChHHHHHHHHHHHHcCCc---eEEehhhHH-HHHHHHHH-h-hCCCCEEEEEecccccccchhhhhhcccccccccc
Confidence            333334566777889998874   246766665 56776554 2 468999764332 33  223344455679998887


Q ss_pred             eCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCCCCCCC
Q 035915          229 PEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLNLALHR  304 (344)
Q Consensus       229 p~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LDLs~l~  304 (344)
                      ..+      +.+++++++++     +|++|-+-..+|  ..+.||+.|++ +|++|+.++||-+-+-+ ...|++   ++
T Consensus       119 d~~------~~~~~~~ai~~-----~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~---~G  184 (380)
T d1ibja_         119 NTT------KLDEVAAAIGP-----QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LG  184 (380)
T ss_dssp             CTT------SHHHHHHHCCS-----SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TT
T ss_pred             Ccc------hHHHHHHHhcc-----CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccccc---cC
Confidence            643      45678888765     588988877777  99999988875 69999999999997641 344554   58


Q ss_pred             CcEEEEccccCCCCCCC--ceEEEEEeCC
Q 035915          305 PDFVLCNLDNTQNAQPS--KITCLLIRKK  331 (344)
Q Consensus       305 ~DFvv~S~HK~l~G~P~--GiG~L~Vr~~  331 (344)
                      +|+++-|+-|+ ++|=.  -.|++.++++
T Consensus       185 aDiVvhS~TKy-i~GhsDv~~G~v~~~~~  212 (380)
T d1ibja_         185 ADIVMHSATKF-IAGHSDVMAGVLAVKGE  212 (380)
T ss_dssp             CSEEEEETTTT-TTCSSCCCCEEEEECSH
T ss_pred             CCEEEecccce-eccccCccccccccchh
Confidence            99999999999 77633  3566666653

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=98.28  E-value=3e-06  Score=79.54  Aligned_cols=164  Identities=11%  Similarity=0.031  Sum_probs=102.6

Q ss_pred             HHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcCHHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          160 QARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEELDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       160 ~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      +.|+.||+++    |.+.+..+|+.|+|+++++.+++.++ ..+||.++.. -.+..  .....+..|.+.+.++.... 
T Consensus        70 ~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~-~~pgd~vi~~~p~~~~--~~~~~~~~g~~~v~~~~~~~~  146 (394)
T d1c7na_          70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYP--FFMAIKNQERKIIECELLEKD  146 (394)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTH--HHHHHHTTTCEEEECCCEEET
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc-cccccccccccCcccc--hhhHHhhhhhccccccccccc
Confidence            4577777765    54322238999999999999998887 5689986533 22221  22334456777766654322 


Q ss_pred             -CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCc---CCccCCCC--
Q 035915          234 -DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVV---GEDRLNLA--  301 (344)
Q Consensus       234 -~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~---G~~~LDLs--  301 (344)
                       ...++.+.++.++..    .+++++.++.-+|  |.+++.+.+.    .|+++++++++|-+..-.   +.....+.  
T Consensus       147 ~~~~~d~~~~~~~~~~----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  222 (394)
T d1c7na_         147 GYYTIDFQKLEKLSKD----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI  222 (394)
T ss_dssp             TEEECCHHHHHHHHTC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             ccccchhhhhhhhhcc----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhh
Confidence             224677777766543    2578888876666  9999986543    358899999999876420   00000001  


Q ss_pred             ---CCCCcEEEEccccCCCCCC-CceEEEEEeCC
Q 035915          302 ---LHRPDFVLCNLDNTQNAQP-SKITCLLIRKK  331 (344)
Q Consensus       302 ---~l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~  331 (344)
                         ....-+++.|+=|. |+.| -.+|.+++.+.
T Consensus       223 ~~~~~~~~i~~~s~SK~-~~~~G~R~g~~~~~~~  255 (394)
T d1c7na_         223 DEQLADKTITFTAPSKT-FNIAGMGMSNIIIKNP  255 (394)
T ss_dssp             CHHHHTTEEEEECSHHH-HTCGGGCCEEEECCCH
T ss_pred             hcccccceeeccccccc-ccccccccccccccCh
Confidence               12345778899998 8766 24566666553

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.25  E-value=7.5e-05  Score=71.74  Aligned_cols=176  Identities=15%  Similarity=0.074  Sum_probs=117.4

Q ss_pred             hHHHHHHhhccC-C-CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEE-cCCcC-
Q 035915          135 EPSRLLDILTKK-S-SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMT-IIGEE-  210 (344)
Q Consensus       135 ~~~~L~~~L~gn-s-s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS-~~eH~-  210 (344)
                      ..+.+.+...++ . ...++...-..+...++||.+-|+.    ..+.++++-.|+..++.++ .++||+++. ..-+. 
T Consensus        44 ~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~  118 (398)
T d1qgna_          44 KTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAE----STLLMASGMCASTVMLLAL-VPAGGHIVTTTDCYRK  118 (398)
T ss_dssp             SHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHH-SCSSCEEEEETTSCHH
T ss_pred             CHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCCc----eEEEecCcchHHHHHHhhc-ccccccccccccccch
Confidence            355566655544 2 2345555556677888899999984    3566666667777777766 568999764 33344 


Q ss_pred             -HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHH-HhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEE
Q 035915          211 -LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQ-YFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVL  285 (344)
Q Consensus       211 -~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~-~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vl  285 (344)
                       ...+..+.++.|+++..++...      .+.... ..++     +|++|-+-..+|  ..+.||+.|++ +|++|++++
T Consensus       119 t~~l~~~~~~~~gi~~~~~~~~~------~~~~~~~~~~~-----~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~v  187 (398)
T d1qgna_         119 TRIFIETILPKMGITATVIDPAD------VGALELALNQK-----KVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVC  187 (398)
T ss_dssp             HHHHHHHTGGGGTCEEEEECSSC------HHHHHHHHHHS-----CEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred             hhhhhcccccccccccccccccc------hhhhhhhhccc-----cceEEEccCccccccccchHHHHHHHHhhcCCEEE
Confidence             3344555677899988876432      223333 3333     588887777777  99999988865 699999999


Q ss_pred             ecccccCc-CCccCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          286 LDATALVV-GEDRLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       286 vDAaQa~~-G~~~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ||-+=+-+ ...|++   +++|+++-|+=|+ ++|-..  .|++..++
T Consensus       188 VDnT~atP~~~~Pl~---~GaDiVihS~TKy-~~Ghsdv~~G~v~~~~  231 (398)
T d1qgna_         188 IDGTFATPLNQKALA---LGADLVLHSATKF-LGGHNDVLAGCISGPL  231 (398)
T ss_dssp             EECTTTCTTTCCTTT---TTCSEEEECTTTT-TTCSSSCCCEEEEECH
T ss_pred             ecceeeccccCCchh---hCCCEEEEechhh-cCcccceeehhhcchh
Confidence            99996541 334443   6899999999999 887643  34444443

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.4e-05  Score=74.47  Aligned_cols=165  Identities=9%  Similarity=0.022  Sum_probs=106.9

Q ss_pred             HHHHHHHHHc----CCCCC-CCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC
Q 035915          160 QARNKVLKHC----GLPDD-EYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       160 ~AR~~IA~~L----ga~p~-ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      +.|+.||+++    |.+.+ +.+|+.|+|+++|+.+++.++- .+|+.++ ....+..  ........|.++..++.+..
T Consensus        67 ~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~--~~~~~~~~g~~~~~~~~~~~  143 (382)
T d1u08a_          67 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDS--YAPAIALSGGIVKRMALQPP  143 (382)
T ss_dssp             HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEecccccc--hhhhhhhccccceecccccc
Confidence            4666677654    65432 2259999999999999998873 6788754 3344432  12233446888888777665


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCcc---CCCCC--
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDR---LNLAL--  302 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~---LDLs~--  302 (344)
                      ...++.+++++.+.+     +++++.++.-+|  |++++.+.+.+    ++++++.++.|..-...-..+   .....  
T Consensus       144 ~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~  218 (382)
T d1u08a_         144 HFRVDWQEFAALLSE-----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHP  218 (382)
T ss_dssp             TCCCCHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSH
T ss_pred             cccCCHHHHhhhhcc-----CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccc
Confidence            567788888887765     466777764455  99999966543    356788888887755411011   11100  


Q ss_pred             --CCCcEEEEccccCCCCCC-CceEEEEEeCCCc
Q 035915          303 --HRPDFVLCNLDNTQNAQP-SKITCLLIRKKSF  333 (344)
Q Consensus       303 --l~~DFvv~S~HK~l~G~P-~GiG~L~Vr~~~~  333 (344)
                        .+--.++.|+=|. ++.| -.+|.++..++..
T Consensus       219 ~~~~~~i~~~s~SK~-~~~pG~RiG~~v~~~~~~  251 (382)
T d1u08a_         219 QLRERAVAVSSFGKT-YHMTGWKVGYCVAPAPIS  251 (382)
T ss_dssp             HHHTTEEEEEEHHHH-TTCGGGCCEEEECCHHHH
T ss_pred             cccCcEEEEeecccc-ccCCcccchhhhccchhH
Confidence              1124788999998 8877 2589888765544

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=5.9e-05  Score=73.03  Aligned_cols=178  Identities=8%  Similarity=-0.039  Sum_probs=115.7

Q ss_pred             hHHHHHHhhccC-C-CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcCC-cC-
Q 035915          135 EPSRLLDILTKK-S-SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTIIG-EE-  210 (344)
Q Consensus       135 ~~~~L~~~L~gn-s-s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~e-H~-  210 (344)
                      ..+.+.+...+. . ...++...-..+...++|+.+=|+.   +.++|.||. .|+..++.++ .++||+++..-. +. 
T Consensus        35 ~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~---~a~~~~SGm-aAi~~~~~~l-~~~gd~il~~~~~Yg~  109 (421)
T d2ctza1          35 SPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGK---AALATASGH-AAQFLALTTL-AQAGDNIVSTPNLYGG  109 (421)
T ss_dssp             CHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHH-CCTTCEEEECSCCCHH
T ss_pred             CHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCC---eEEEecChH-HHHHHHHHhh-cccccceeecCCcCCc
Confidence            455555554444 1 2244554455666777889888874   246666666 4555555554 468999764433 33 


Q ss_pred             -HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEe
Q 035915          211 -LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLL  286 (344)
Q Consensus       211 -~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlv  286 (344)
                       ...++.+..+.|+++..+..+.     ..+..+..+++     +|++|-+-.-+|  ..++||+.|++ +|++|+.++|
T Consensus       110 t~~l~~~~~~~~gi~~~~~d~~~-----~~~~~~~~~~~-----~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vv  179 (421)
T d2ctza1         110 TFNQFKVTLKRLGIEVRFTSREE-----RPEEFLALTDE-----KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIV  179 (421)
T ss_dssp             HHHHHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHhhccccceeccccc-----CcchhccccCC-----CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEe
Confidence             2334556677899998865432     23444555544     588988887777  99999988865 6999999999


Q ss_pred             ccccc-C-cCCccCCCCCCCCcEEEEccccCCCCCCC-c-eEEEEEeCC
Q 035915          287 DATAL-V-VGEDRLNLALHRPDFVLCNLDNTQNAQPS-K-ITCLLIRKK  331 (344)
Q Consensus       287 DAaQa-~-~G~~~LDLs~l~~DFvv~S~HK~l~G~P~-G-iG~L~Vr~~  331 (344)
                      |-+=+ - ....|++   +++|+++-|+-|. ++|=. - .|+++.+++
T Consensus       180 DnT~a~tP~~~~Pl~---~GaDiVvhS~TKy-l~GHsD~l~G~vv~~~~  224 (421)
T d2ctza1         180 DNTFGMGGYLLRPLA---WGAALVTHSLTKW-VGGHGAVIAGAIVDGGN  224 (421)
T ss_dssp             ECGGGGGGTSCCGGG---GTCSEEEEETTTT-TTCSSCCCCEEEEECSC
T ss_pred             cccccccceeccccc---cCCcEEEEechhh-ccCCCCeEEEEEEcCCc
Confidence            99865 2 0234554   5899999999999 77543 2 455555544

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=98.19  E-value=5.7e-05  Score=72.43  Aligned_cols=179  Identities=8%  Similarity=-0.050  Sum_probs=117.4

Q ss_pred             hHHHHHHhhccCC--CChhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC-
Q 035915          135 EPSRLLDILTKKS--SFPGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE-  210 (344)
Q Consensus       135 ~~~~L~~~L~gns--s~~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~-  210 (344)
                      ..+.+.+.+.+..  ...++...-..+...++++.+=|+..   .++| +++-.|+..+..++ .++|++++.. .-+. 
T Consensus        36 ~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~---a~~~-sSGmaAi~~~~l~l-~~~gd~vv~~~~~yg~  110 (394)
T d1e5ea_          36 NCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEA---CVAT-SSGMGAIAATVLTI-LKAGDHLISDECLYGC  110 (394)
T ss_dssp             SHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSE---EEEE-SSHHHHHHHHHHHH-CCTTCEEEEESCCCHH
T ss_pred             CHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcc---eeee-ccchHHHHHHHHhh-cccccccccccceeeh
Confidence            3455555444442  23455555566777788999988741   3555 55556777666555 4689997643 3343 


Q ss_pred             -HHHHHHHHHcCCcEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH-HHH-HhCCcEEE
Q 035915          211 -LDYVREFASFKESKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI-SEA-HRNSWHVL  285 (344)
Q Consensus       211 -~~~ir~la~~~G~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I-a~a-r~~g~~vl  285 (344)
                       ...+..+..+.|+++..++...      .+++++++++     +|++|-+-..+|  ..+.|++.+ +.+ +++|+.++
T Consensus       111 t~~~~~~~~~~~gi~~~~~d~~d------~~~~~~~i~~-----~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vv  179 (394)
T d1e5ea_         111 THALFEHALTKFGIQVDFINTAI------PGEVKKHMKP-----NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVI  179 (394)
T ss_dssp             HHHHHHTHHHHTTCEEEEECTTS------TTHHHHHCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEE
T ss_pred             hhHhHHHHhhccceeeeccCCCC------HHHHHHhhcc-----cccEEEEeccCCcceeeehhhhhhhccccccCeEEE
Confidence             2344555677899999987642      3467777765     478888776666  899999755 545 45799999


Q ss_pred             ecccccCc-CCccCCCCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCCc
Q 035915          286 LDATALVV-GEDRLNLALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKSF  333 (344)
Q Consensus       286 vDAaQa~~-G~~~LDLs~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~~  333 (344)
                      ||-+=+-+ -..|++   +++|+++-|+=|+ ++|-..  .|+++++++..
T Consensus       180 vDnT~atP~~~~Pl~---~GaDiVvhS~TKy-~~GhsDv~~G~v~~~~~~~  226 (394)
T d1e5ea_         180 ADNTFCSPMITNPVD---FGVDVVVHSATKY-INGHTDVVAGLICGKADLL  226 (394)
T ss_dssp             EECTTTCTTTCCGGG---GTCSEEEEETTTT-TTCSSCCCCEEEEECHHHH
T ss_pred             ecCcccCcccCCchh---cCCCEEEechhhh-cCCCcccccccccchhhHH
Confidence            99886541 233443   6899999999999 775432  56677665533

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=6.2e-06  Score=75.73  Aligned_cols=155  Identities=14%  Similarity=0.039  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHcCC---CCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCCC
Q 035915          159 IQARNKVLKHCGL---PDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWLD  234 (344)
Q Consensus       159 e~AR~~IA~~Lga---~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~~  234 (344)
                      .+.|+.||++++.   +++  +|++|+|+++++.+++..     ||+++ ..-.+.  .....++..|++++.+|.+.+ 
T Consensus        59 ~~Lr~aia~~~~~~~v~~d--~I~it~G~~~~l~~l~~~-----~d~v~i~~P~y~--~~~~~~~~~g~~~v~v~~~~~-  128 (334)
T d2f8ja1          59 EELIEKILSYLDTDFLSKN--NVSVGNGADEIIYVMMLM-----FDRSVFFPPTYS--CYRIFAKAVGAKFLEVPLTKD-  128 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCGG--GEEEEEHHHHHHHHHHHH-----SSEEEECSSCCH--HHHHHHHHHTCCEEECCCCTT-
T ss_pred             HHHHHHHHHHhcccCCCcc--eEEecCcchhHHHHHhhh-----cccccccccccc--ccccchhccCCcccccccccc-
Confidence            4588999999874   444  799999999999998875     36654 222222  223344456999999998753 


Q ss_pred             CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCCcc--CCCCCCCCcEEEE
Q 035915          235 LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGEDR--LNLALHRPDFVLC  310 (344)
Q Consensus       235 g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~~~--LDLs~l~~DFvv~  310 (344)
                      +....     ...     .+++++.++.-+|  |..++.+.+.+++++++++++|-+..-.....  ......+.-+++.
T Consensus       129 ~~~~~-----~~~-----~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~  198 (334)
T d2f8ja1         129 LRIPE-----VNV-----GEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIR  198 (334)
T ss_dssp             SCCCC-----CCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEE
T ss_pred             ccccc-----ccc-----ccceEEEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccccCceEEEEe
Confidence            33221     111     2456666654445  99999988888888899999986543301111  1112233458889


Q ss_pred             ccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          311 NLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       311 S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      |+-|. |+.|- .+|.++..+++.+
T Consensus       199 S~SK~-~~~~G~R~G~~~~~~~~i~  222 (334)
T d2f8ja1         199 TFSKA-FSLAAQRVGYVVASEKFID  222 (334)
T ss_dssp             ESTTT-SSCTTTCEEEEEECHHHHH
T ss_pred             cCccc-cchhhhhhhhcccchHHHH
Confidence            99998 88773 5888887665443

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=0.00012  Score=67.43  Aligned_cols=164  Identities=9%  Similarity=-0.007  Sum_probs=103.1

Q ss_pred             HHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-
Q 035915          160 QARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILAPEAWL-  233 (344)
Q Consensus       160 ~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~~~~-  233 (344)
                      +.|+.+++++    |...+..+|++|+|+++|+.+++.++ ..+|+.++ ..-.+..  ....+...|..+..++.+.. 
T Consensus        69 ~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-~~~gd~vlv~~P~y~~--~~~~~~~~~~~~~~~~~~~~~  145 (375)
T d1o4sa_          69 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LDPGDEVIVFSPVWVS--YIPQIILAGGTVNVVETFMSK  145 (375)
T ss_dssp             HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTT--HHHHHHHTTCEEEEEECCGGG
T ss_pred             HHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH-hCCCCEEEEccCcccc--chhhhhccccccccccccccc
Confidence            3555555554    44333338999999999999999988 46888854 2222331  12223345777777665432 


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH----HHhCCcEEEecccccCcCCcc---CC----C
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE----AHRNSWHVLLDATALVVGEDR---LN----L  300 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~----ar~~g~~vlvDAaQa~~G~~~---LD----L  300 (344)
                      +...+.+.++....+     +++++.++.-+|  |..++.+.+.+    |++++++++.|.+... -...   ..    .
T Consensus       146 ~~~~~~~~~~~~~~~-----~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~  219 (375)
T d1o4sa_         146 NFQPSLEEVEGLLVG-----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS-LVYTDEFTSILDVS  219 (375)
T ss_dssp             TTCCCHHHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-SBCSSCCCCHHHHC
T ss_pred             cccchhHHHHHhhcc-----CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcc-cccccccccccccc
Confidence            234456655554433     577777775566  99999866543    5889999999987665 2111   11    1


Q ss_pred             CCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          301 ALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       301 s~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      ...+--+++.|+=|. |+.|- .+|.++..++..
T Consensus       220 ~~~~~~i~~~S~SK~-~~l~G~R~G~~~~~~~~~  252 (375)
T d1o4sa_         220 EGFDRIVYINGFSKS-HSMTGWRVGYLISSEKVA  252 (375)
T ss_dssp             SSSTTEEEEEESTTT-TTCGGGCCEEEECCHHHH
T ss_pred             CCCCCEEEEeechhh-ccCCccccccccccccch
Confidence            223456889999998 88662 488887665443

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=0.00011  Score=70.20  Aligned_cols=160  Identities=13%  Similarity=0.044  Sum_probs=108.8

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++...-..+...+++|++=|+.    ..+.++++-.|+..++.++ .++|++++.. .-+.  ...+..+..+.|.++.+
T Consensus        45 ~R~~nPt~~~le~~la~LEgg~----~a~~~sSGMaAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~  119 (384)
T d1cs1a_          45 SRRGNPTRDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF  119 (384)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHhCCC----ceEEecChHHHHHHHHhhc-ccccceecccccccchhhhhhhhhhccccccccc
Confidence            3444445666778889998874    2444455555676666665 4689997643 2233  33455666677888887


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHhCCcEEEecccccCc-CCccCCCCCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHRNSWHVLLDATALVV-GEDRLNLALH  303 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~-G~~~LDLs~l  303 (344)
                      +...      +.+.++..+++     +|++|-+-..+|  ..+.||+.|++ +|++|+.++||-+=+-+ ...|++   +
T Consensus       120 ~d~~------d~~~~~~~~~~-----~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~---~  185 (384)
T d1cs1a_         120 VDQG------DEQALRAALAE-----KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLA---L  185 (384)
T ss_dssp             ECTT------CHHHHHHHHHT-----CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG---G
T ss_pred             ccCC------CHHHHHhhccc-----cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccc---c
Confidence            6542      45678888876     477888877777  99999988865 69999999999997651 334444   6


Q ss_pred             CCcEEEEccccCCCCCCCc--eEEEEEeC
Q 035915          304 RPDFVLCNLDNTQNAQPSK--ITCLLIRK  330 (344)
Q Consensus       304 ~~DFvv~S~HK~l~G~P~G--iG~L~Vr~  330 (344)
                      ++|+++-|+=|+ ++|=..  .|+++.++
T Consensus       186 GaDiVvhS~TKy-i~Ghsdv~~G~vv~~~  213 (384)
T d1cs1a_         186 GADLVLHSCTKY-LNGHSDVVAGVVIAKD  213 (384)
T ss_dssp             TCSEEEEETTTT-TTCSSCCCCEEEEESS
T ss_pred             CCCEEEEccccc-cccCCCcccccccCCc
Confidence            899999999999 765432  34455544

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=98.06  E-value=2.5e-05  Score=73.22  Aligned_cols=150  Identities=11%  Similarity=-0.012  Sum_probs=101.7

Q ss_pred             HHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEcC-CcC--HHHHHHHHHcCCcEEEEEeCCCCCCccC
Q 035915          162 RNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTII-GEE--LDYVREFASFKESKVILAPEAWLDLRIK  238 (344)
Q Consensus       162 R~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~~-eH~--~~~ir~la~~~G~kV~~vp~~~~~g~i~  238 (344)
                      .+++|.+-|+.    ..+.++++..|+..+..++ +++||+++..- -+.  ...+..+.++.|+++.+++.+      +
T Consensus         4 E~~la~Leg~~----~a~~~sSGMaAi~~~l~~l-l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~------d   72 (331)
T d1pffa_           4 EGKIAKLEHAE----ACAATASGMGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA------V   72 (331)
T ss_dssp             HHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------S
T ss_pred             HHHHHHHhCCC----eEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc------c
Confidence            45788888874    2444466667776665555 57899976432 233  233455567789999998764      3


Q ss_pred             HHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHH-HHH-HhCCcEEEecccccCc-CCccCCCCCCCCcEEEEccc
Q 035915          239 GSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWI-SEA-HRNSWHVLLDATALVV-GEDRLNLALHRPDFVLCNLD  313 (344)
Q Consensus       239 ~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~I-a~a-r~~g~~vlvDAaQa~~-G~~~LDLs~l~~DFvv~S~H  313 (344)
                      .+.+++++++     +|++|-+-..+|  ..+.++..+ +.+ |++|++++||-+=+-+ ...|++   +++|+++-|+=
T Consensus        73 ~~~~~~~i~~-----~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~---~GaDiVv~S~T  144 (331)
T d1pffa_          73 PGNIEKHLKP-----NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLD---LGVDIVVHSAT  144 (331)
T ss_dssp             TTHHHHTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGG---GTCSEEEEETT
T ss_pred             hhhHhhhccc-----ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccc---cCCCEEEecch
Confidence            4567777765     477887766665  888999755 444 6789999999886631 345555   57999999999


Q ss_pred             cCCCCCCC--ceEEEEEeCC
Q 035915          314 NTQNAQPS--KITCLLIRKK  331 (344)
Q Consensus       314 K~l~G~P~--GiG~L~Vr~~  331 (344)
                      |+ ++|=.  -.|+++.+++
T Consensus       145 Ky-~~Gh~d~~~G~v~~~~~  163 (331)
T d1pffa_         145 KY-INGHTDVVAGLVCSRAD  163 (331)
T ss_dssp             TT-TSSSSSCCCEEEEECHH
T ss_pred             hh-cCCCCcccccccccccc
Confidence            99 76532  2366666544

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00021  Score=68.35  Aligned_cols=162  Identities=10%  Similarity=0.036  Sum_probs=109.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC--HHHHHHHHHcCCcEEE
Q 035915          150 PGSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE--LDYVREFASFKESKVI  226 (344)
Q Consensus       150 ~g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~--~~~ir~la~~~G~kV~  226 (344)
                      .++...-..+...+++|++=|+.    ..+.++++-.|+..++.++ .++||+++.. .-|.  ...+..+..+.|+++.
T Consensus        52 Y~R~~nPt~~~le~~la~LEg~~----~a~~~~SGMaAi~~~l~~l-~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~  126 (391)
T d1cl1a_          52 YGRRGTLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS  126 (391)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred             eECCCChhHHHHHHHHHHHhCCc----cEEEeccccceeeehhhcc-cCCCCeEEEecccccchhhhhhhcccccccccc
Confidence            45555556677788899988873    3555566666777666555 4689997643 3333  2334555567799999


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HHh--CCcEEEecccccCcCC--ccCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AHR--NSWHVLLDATALVVGE--DRLN  299 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar~--~g~~vlvDAaQa~~G~--~~LD  299 (344)
                      .+...      +.+++++++++     +|++|-+-..+|  ..+.|++.+++ +++  +|++++||-+=+- +.  .|++
T Consensus       127 ~~d~~------d~~~~~~~i~~-----~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~at-P~~~~Pl~  194 (391)
T d1cl1a_         127 WFDPL------IGADIVKHLQP-----NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAA-GVLFKALD  194 (391)
T ss_dssp             EECTT------CGGGGGGTCCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTT-TTSSCGGG
T ss_pred             cccCc------ccccccccccc-----ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccc-hhhhcccc
Confidence            87653      23456666654     478888877776  89999987765 444  6999999999776 32  3443


Q ss_pred             CCCCCCcEEEEccccCCCCCCCc--eEEEEEeCCC
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSK--ITCLLIRKKS  332 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~G--iG~L~Vr~~~  332 (344)
                         +++|+++-|.=|+ ++|=..  .|+++.+++.
T Consensus       195 ---~GaDivvhS~TKy-~~GhsdvlgG~vv~~~~~  225 (391)
T d1cl1a_         195 ---FGIDVSIQAATKY-LVGHSDAMIGTAVCNARC  225 (391)
T ss_dssp             ---GTCSEEEEETTTT-TTCSSSCCCEEEEECTTT
T ss_pred             ---cccceEEeecchh-ccccccccccceeccccc
Confidence               6899999999999 765432  4444444443

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.00057  Score=65.29  Aligned_cols=158  Identities=13%  Similarity=0.082  Sum_probs=106.3

Q ss_pred             hhhhhHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCeEEEc-CCcC--HHHHHHHHHcCCcEEEE
Q 035915          151 GSFISIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNFYMTI-IGEE--LDYVREFASFKESKVIL  227 (344)
Q Consensus       151 g~~as~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~ivS~-~eH~--~~~ir~la~~~G~kV~~  227 (344)
                      ++...-..+...++++.+-|+.   +.++|.||. .|+..+...  +.+||+++.. .-+.  ...+..+..+.|+++..
T Consensus        50 sR~gnPT~~~lE~~la~LE~~~---~a~~~sSGm-aAi~~~l~~--l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~  123 (393)
T d1n8pa_          50 SRSQNPNRENLERAVAALENAQ---YGLAFSSGS-ATTATILQS--LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF  123 (393)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCS---EEEEESCHH-HHHHHHHHT--SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred             eCCCChHHHHHHHHHHHHhCCc---eEEEecCch-hHHHhhhhc--ccCCCeeeeeeeecccchhhhhhhhhcccceeEE
Confidence            3444445566777899998874   246676665 566665543  4578886543 2233  33445556677888877


Q ss_pred             EeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHH-HH----hCCcEEEecccccCc-CCccCC
Q 035915          228 APEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISE-AH----RNSWHVLLDATALVV-GEDRLN  299 (344)
Q Consensus       228 vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~-ar----~~g~~vlvDAaQa~~-G~~~LD  299 (344)
                      ++.       +.+++++++++     +|++|-+-..+|  ..+.||+.|++ +|    ++|+.++||-+=+-+ ...|++
T Consensus       124 ~~~-------~~~~~~~~i~~-----~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~  191 (393)
T d1n8pa_         124 TND-------LLNDLPQLIKE-----NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLN  191 (393)
T ss_dssp             ESS-------HHHHHHHHSCS-----SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGG
T ss_pred             eec-------chHHHHHHhhh-----hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchh
Confidence            642       23568888765     588888887777  99999987765 46    679999999996541 345555


Q ss_pred             CCCCCCcEEEEccccCCCCCCCc-e-EEEEEeC
Q 035915          300 LALHRPDFVLCNLDNTQNAQPSK-I-TCLLIRK  330 (344)
Q Consensus       300 Ls~l~~DFvv~S~HK~l~G~P~G-i-G~L~Vr~  330 (344)
                         +++|+++-|+=|+ ++|-.. + |++..++
T Consensus       192 ---~GADiVvhS~TKy-i~GhsDv~~G~v~~~~  220 (393)
T d1n8pa_         192 ---FGADIVVHSATKY-INGHSDVVLGVLATNN  220 (393)
T ss_dssp             ---GTCSEEEEETTTT-TTCSSCCCCEEEEESC
T ss_pred             ---hCCCEEEEccccc-cCCCCccccceeeecc
Confidence               5899999999999 776432 3 4454454

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=97.60  E-value=0.00013  Score=70.83  Aligned_cols=162  Identities=12%  Similarity=-0.033  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhhCCCCCCCe-EEEcCCcC--HHHHHHHHHcCCcEEEEEeCCCC
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGESYPFFRGNF-YMTIIGEE--LDYVREFASFKESKVILAPEAWL  233 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~sl~~~~Gd~-ivS~~eH~--~~~ir~la~~~G~kV~~vp~~~~  233 (344)
                      .+-+-+..++++.|.+.-  +.-.-.|+|.....+.-.......+. +++..-|+  ...++..|+..|++|+.+|.+..
T Consensus       109 ~l~e~q~~l~eltGmd~~--n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~  186 (437)
T d1wyua1         109 ATFEYQTMIAELAGLEIA--NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGG  186 (437)
T ss_dssp             HHHHHHHHHHHHHTSSEE--CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTT
T ss_pred             HHHHHHHHHHHhhCCCcc--ccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccc
Confidence            567889999999998521  11222466654332222221223344 55655566  33456667778999999998742


Q ss_pred             CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-cccccHHHHHH-HHhCCcEEEecccccCcCCccCCCCCCCCcEEEEc
Q 035915          234 DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYSMHWISE-AHRNSWHVLLDATALVVGEDRLNLALHRPDFVLCN  311 (344)
Q Consensus       234 ~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~Pl~~Ia~-ar~~g~~vlvDAaQa~~G~~~LDLs~l~~DFvv~S  311 (344)
                        ..+.++    +.+     .+.-|.++--|+ |.+.+++.|.. +|+.|.++++|+.....+ .--.-.++++|+++++
T Consensus       187 --~~~~~~----~~~-----~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~-~l~~Pg~~GaDi~~g~  254 (437)
T d1wyua1         187 --RTPLPE----VGE-----EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLG-VLKPPGAYGADIAVGD  254 (437)
T ss_dssp             --BCCCCC----CCT-----TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGG-TBCCHHHHTCSEEEEE
T ss_pred             --cchhhh----hcc-----ceeEEEEccccccccccchHHHHHHhhhccceEEeeechhhhh-ccccccccccceEeec
Confidence              222221    222     343343443333 99999977754 699999988887655412 2223345799999999


Q ss_pred             cccC----CCCCCCceEEEEEeCCCc
Q 035915          312 LDNT----QNAQPSKITCLLIRKKSF  333 (344)
Q Consensus       312 ~HK~----l~G~P~GiG~L~Vr~~~~  333 (344)
                      ++++    -|||| |.|++.++++..
T Consensus       255 ~q~fg~p~g~GGP-~~G~~a~~~~l~  279 (437)
T d1wyua1         255 GQSLGLPMGFGGP-HFGFLATKKAFV  279 (437)
T ss_dssp             CTTTTCCCGGGCS-CCEEEEECGGGG
T ss_pred             cceeccccCCCcC-ccccccccchhh
Confidence            5552    14445 679999998654

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=96.92  E-value=0.014  Score=53.76  Aligned_cols=169  Identities=2%  Similarity=-0.184  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEEe--CCHHHH---HHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEE
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLFT--PNYRDA---MMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKV  225 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVFT--snaTeA---lnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV  225 (344)
                      +.+.|+.|++++--      +++  .|+-|  .+++.+   +.+++..+ ..+||.++ ..-.++.  ....++..|+++
T Consensus        73 ~~~lr~aia~~~~~~~~~~~~~~--~i~~~~~~~~~g~~~~~~~~~~~l-~~pGd~Vlv~~P~y~~--y~~~~~~~g~~~  147 (401)
T d7aata_          73 LADFTRASAELALGENSEAFKSG--RYVTVQGISGTGSLRVGANFLQRF-FKFSRDVYLPKPSWGN--HTPIFRDAGLQL  147 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEEESCCTT--HHHHHHHTTCEE
T ss_pred             CHHHHHHHHHHHhccCCcccCcC--ceEEeccchHHHHHHHHHHhhHhh-cCCCceEEEecCCCcc--hhhHHHHcCCeE
Confidence            34577777776532      233  35444  344444   44444554 46899854 3333331  122344569999


Q ss_pred             EEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCcc-
Q 035915          226 ILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDR-  297 (344)
Q Consensus       226 ~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~-  297 (344)
                      +.+|.... +...+.+.+.+.+...  ..+++++.++--+|  |..++.+.+.    .|++++++++.|-+-.-..... 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~  225 (401)
T d7aata_         148 QAYRYYDPKTCSLDFTGAMEDISKI--PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDI  225 (401)
T ss_dssp             EEEECEETTTTEECHHHHHHHHTTS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCH
T ss_pred             EEEeccccccccccHHHHHHHHhcC--CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCc
Confidence            99987432 3456777777766532  13567777765556  9999996554    3589999999998775411110 


Q ss_pred             -CC------CCCCCC-cEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          298 -LN------LALHRP-DFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       298 -LD------Ls~l~~-DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                       .+      +..... -+++.|+-|. |+.|. .+|++++.....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~s~sk~-~~~~G~RiG~~~~~~~~~~  270 (401)
T d7aata_         226 NRDAWALRHFIEQGIDVVLSQSYAKN-MGLYGERAGAFTVICRDAE  270 (401)
T ss_dssp             HHHTHHHHHHHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSSHH
T ss_pred             ccchhhhhhhhhhhcccceeEecccc-ceeeccccceeecchHHHH
Confidence             00      011112 2556677787 77663 5899998877654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0076  Score=56.40  Aligned_cols=144  Identities=13%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             CeEEEeCCHHHHHHHHHhh-CCCCCCCeEEE-cCCcC--H-HHHH-----HHHHc---CCcEEEEEeCCCCCCccCHHHH
Q 035915          176 YLVLFTPNYRDAMMLVGES-YPFFRGNFYMT-IIGEE--L-DYVR-----EFASF---KESKVILAPEAWLDLRIKGSQL  242 (344)
Q Consensus       176 y~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS-~~eH~--~-~~ir-----~la~~---~G~kV~~vp~~~~~g~i~~~~L  242 (344)
                      ..|.||.++|||+..++.. ..+.....|++ .-.+|  . .++.     ..-..   .-..+..+|.+      +.+.|
T Consensus        97 ~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~------d~~~l  170 (387)
T d1vefa1          97 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN------DVEAL  170 (387)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT------CHHHH
T ss_pred             eeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC------CHHHH
Confidence            3699999999998765442 11222234543 33344  1 1111     00000   01234456643      45678


Q ss_pred             HHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCccCCCC----CCCCcEEEE
Q 035915          243 SQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDRLNLA----LHRPDFVLC  310 (344)
Q Consensus       243 ~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~LDLs----~l~~DFvv~  310 (344)
                      ++.+.+     ...-|.+ |.+++ |.+.|    ++.+.+ |+++|+++++|=+|+ + |..-.-..    ...||++++
T Consensus       171 ~~~~~~-----~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGf-gR~G~~~~~~~~~v~PDi~~~  244 (387)
T d1vefa1         171 KRAVDE-----ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGM-GRTGKRFAFEHFGIVPDILTL  244 (387)
T ss_dssp             HHHCCT-----TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSTHHHHTCCCSEEEE
T ss_pred             HHhcCC-----CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccccc-CccCCCcccccCCcCCceeee
Confidence            887754     2443444 44444 88877    566654 689999999999997 4 44432222    357999999


Q ss_pred             ccccCC-CCCCCceEEEEEeCCCccc
Q 035915          311 NLDNTQ-NAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       311 S~HK~l-~G~P~GiG~L~Vr~~~~~~  335 (344)
                      +  |.| -|+|  +++...+++..+.
T Consensus       245 g--K~l~gG~~--~~~~~~~~~~~~~  266 (387)
T d1vefa1         245 A--KALGGGVP--LGVAVMREEVARS  266 (387)
T ss_dssp             C--GGGGTTSS--CEEEEEEHHHHHT
T ss_pred             c--ccCCCCcc--ccccccceeeeec
Confidence            7  431 2445  5666777665443

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=96.58  E-value=0.01  Score=54.95  Aligned_cols=171  Identities=9%  Similarity=-0.130  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhC------CCCCCCeEE-EcCCcCHHHHHHHHHcCCcE
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESY------PFFRGNFYM-TIIGEELDYVREFASFKESK  224 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl------~~~~Gd~iv-S~~eH~~~~ir~la~~~G~k  224 (344)
                      +.+.|+.|++++.-      .++...++.|++.|.++......+      -..+||.++ ..-.+..  .....+..|.+
T Consensus        76 ~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~--y~~~~~~~G~~  153 (412)
T d1ajsa_          76 LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN--HNGVFTTAGFK  153 (412)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH--HHHHHHHTTCS
T ss_pred             CHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh--hHHHHHHcCCe
Confidence            34577778877621      233335677888888776655432      146899864 4333331  12223345765


Q ss_pred             EE-EEeCC-CCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCc
Q 035915          225 VI-LAPEA-WLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGED  296 (344)
Q Consensus       225 V~-~vp~~-~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~  296 (344)
                      .+ +.+.. .....++.+.+.+.+...  ..+++++.++--+|  |.+++-+.+.    .|++++++++.|-+..-....
T Consensus       154 ~v~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~  231 (412)
T d1ajsa_         154 DIRSYRYWDTEKRGLDLQGFLSDLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG  231 (412)
T ss_dssp             CEEEEECEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred             EEEeecccccccccccHHHHHHHHHhc--cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcC
Confidence            43 33332 112346666666655432  13467777765556  9999986554    358899999999887641111


Q ss_pred             cC---------CCCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCc
Q 035915          297 RL---------NLALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSF  333 (344)
Q Consensus       297 ~L---------DLs~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~  333 (344)
                      ..         ........+++.|+=|. |+.|. .+|.+++.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~-~~~~G~R~G~~~~~~~~~  277 (412)
T d1ajsa_         232 NLEKDAWAIRYFVSEGFELFCAQSFSKN-FGLYNERVGNLTVVAKEP  277 (412)
T ss_dssp             CHHHHTHHHHHHHHTTCCEEEEEECTTT-SCCGGGCEEEEEEECSSH
T ss_pred             Ccccchhhhhhhhhhccccccccccccc-ccCCCCCccccccchhHH
Confidence            10         01122345677777777 77663 489888876654

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=96.51  E-value=0.024  Score=52.65  Aligned_cols=171  Identities=9%  Similarity=0.018  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCC-C----CCCCeEEE-eCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEeC
Q 035915          159 IQARNKVLKHCGL-P----DDEYLVLF-TPNYRDAMMLVGESY-PFFRGNFYM-TIIGEELDYVREFASFKESKVILAPE  230 (344)
Q Consensus       159 e~AR~~IA~~Lga-~----p~ey~VVF-TsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp~  230 (344)
                      .+-|+.+++++.- .    +++..++. |.+++.++.+.+..+ ...+||.++ ..-.+..  ....+...|+++..+|.
T Consensus        76 ~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~--y~~~~~~~g~~~~~~~~  153 (412)
T d1yaaa_          76 PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN--HMAIFENQGLKTATYPY  153 (412)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT--HHHHHHTTTCCEEEEEC
T ss_pred             HHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCch--hHHHHHHcCCceecccc
Confidence            4467777776531 1    12212222 345555554443222 135799864 3333331  12234556899998886


Q ss_pred             CCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccC-----
Q 035915          231 AWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRL-----  298 (344)
Q Consensus       231 ~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~L-----  298 (344)
                      ... +..++.+.+...+....  .++.++.++.-+|  |+.++-+.+.    .+++++++++.|-+-.-......     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~  231 (412)
T d1yaaa_         154 WANETKSLDLNGFLNAIQKAP--EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAY  231 (412)
T ss_dssp             EETTTTEECHHHHHHHHHHSC--TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTH
T ss_pred             cccccccccchhhhcccccCC--CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchh
Confidence            322 23456677776665422  2456777665556  9999986543    35899999999998753111100     


Q ss_pred             -------CCCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          299 -------NLALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       299 -------DLs~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                             .......-+++.|+=|. |+.|- .+|++++..+..+
T Consensus       232 ~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G~RiG~~~~~~~~~~  274 (412)
T d1yaaa_         232 AVRLGVEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQA  274 (412)
T ss_dssp             HHHHHHHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCT
T ss_pred             hhhhhhhccccCCCeEEEEecCCc-cccCcCceEEEEEchhhhh
Confidence                   00112234788899998 88663 4999999877654

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.037  Score=50.64  Aligned_cols=172  Identities=8%  Similarity=-0.080  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHcCC------CCCCCeEEEeCCHHHHHHHHHhhC-CCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEEe
Q 035915          158 EIQARNKVLKHCGL------PDDEYLVLFTPNYRDAMMLVGESY-PFFRGNFYM-TIIGEELDYVREFASFKESKVILAP  229 (344)
Q Consensus       158 le~AR~~IA~~Lga------~p~ey~VVFTsnaTeAlnlva~sl-~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~vp  229 (344)
                      +.+.|+.|++++.-      .++...++-|.+++.++.+....+ .+.+||.++ ..-.++.  ....++..|++++.+|
T Consensus        71 ~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~--y~~~~~~~g~~~~~~~  148 (396)
T d2q7wa1          71 IPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN--HKSVFNSAGLEVREYA  148 (396)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH--HHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCcc--chHHHHHcCCeeEecc
Confidence            34577778876532      223223445677777766555433 235788865 3333331  2333455799999888


Q ss_pred             CCCCCC-ccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCcc---C-
Q 035915          230 EAWLDL-RIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDR---L-  298 (344)
Q Consensus       230 ~~~~~g-~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~---L-  298 (344)
                      ....++ ..+...+.+.....  ..++.++.++--+|  |..++.+.+.    .|++++++++.|-+..-.....   . 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~  226 (396)
T d2q7wa1         149 YYDAENHTLDFDALINSLNEA--QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAE  226 (396)
T ss_dssp             CEETTTTEECHHHHHHHHTTC--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTH
T ss_pred             cccccccccccchHHHHHHHh--ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCch
Confidence            754322 23444454444321  23466666665456  9999996553    3588999999999876411110   0 


Q ss_pred             --C--CCCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          299 --N--LALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       299 --D--Ls~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                        .  .+...-.+++.|+=|. |+.|. .+|.+++.....+
T Consensus       227 ~~~~~~~~~~~~~~~~s~sk~-~~~~G~R~G~~~~~~~~~~  266 (396)
T d2q7wa1         227 GLRAFAAMHKELIVASSYSKN-FGLYNERVGACTLVAADSE  266 (396)
T ss_dssp             HHHHHHHHCSCEEEEEECTTT-TTCGGGCCEEEEEECSSHH
T ss_pred             Hhhhhhhhccccccccccccc-ccccCCCccccccchhHHH
Confidence              0  0112344666777887 77663 4999988876544

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=96.41  E-value=0.0055  Score=58.45  Aligned_cols=157  Identities=11%  Similarity=0.044  Sum_probs=91.5

Q ss_pred             hhhHHHHHHHHHHHHHcC-CCCCCCeEEEeCCHHHHHHHHHhhCC-------CCCCCeEEEcCCcCHHHHHHHHHcCCcE
Q 035915          153 FISIPEIQARNKVLKHCG-LPDDEYLVLFTPNYRDAMMLVGESYP-------FFRGNFYMTIIGEELDYVREFASFKESK  224 (344)
Q Consensus       153 ~as~~le~AR~~IA~~Lg-a~p~ey~VVFTsnaTeAlnlva~sl~-------~~~Gd~ivS~~eH~~~~ir~la~~~G~k  224 (344)
                      +.+..++++=.++-+..| +..+++.|||+.|+||+|++++.++.       ..+|++++...-.-.. ....++..+.+
T Consensus       100 ~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~-Y~~~~~~~~~~  178 (425)
T d2hoxa1         100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV-FREQTKYFDKK  178 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH-HHHHHHHSCBT
T ss_pred             cCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCcccc-HHHHHHHcCCC
Confidence            344444333333333444 54556679999999999999998873       4678887643221111 12222223333


Q ss_pred             EEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHHHHHhCCcEEEecccccCcCC-ccCCCC
Q 035915          225 VILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWISEAHRNSWHVLLDATALVVGE-DRLNLA  301 (344)
Q Consensus       225 V~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia~ar~~g~~vlvDAaQa~~G~-~~LDLs  301 (344)
                      ...+..       |.+.+.+.+++     +++++.+..=||  |.+.      .+-.+++.++.|-+=.. .+ .++. .
T Consensus       179 ~~~~~~-------D~~~~~~~~~~-----~~~ii~l~sPnNPtG~l~------~~v~~~~~~I~DEaY~~-~~f~~~~-~  238 (425)
T d2hoxa1         179 GYVWAG-------NAANYVNVSNP-----EQYIEMVTSPNNPEGLLR------HAVIKGCKSIYDMVYYW-PHYTPIK-Y  238 (425)
T ss_dssp             TEEEEE-------EGGGGTTCSCG-----GGEEEEEESSCTTTCCCC------CCSSTTCEEEEECTTCS-TTTSCCC-S
T ss_pred             CCccCC-------CHHHHHhhCCC-----CceEEEEECCCCCCcchh------hhhhhCCEEEEeccccC-ccccchh-h
Confidence            222222       33334444443     467777665566  9752      22236888999987654 32 2222 2


Q ss_pred             CCCCcEEEEccccCCCCCCC-ceEEEEEeCC
Q 035915          302 LHRPDFVLCNLDNTQNAQPS-KITCLLIRKK  331 (344)
Q Consensus       302 ~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~  331 (344)
                      ...-+.++.|+=|. ||.|- .+|.+++.++
T Consensus       239 ~~~~~Ivl~S~SK~-fglaGlRiGw~i~~~~  268 (425)
T d2hoxa1         239 KADEDILLFTMSKF-TGHSGSRFGWALIKDE  268 (425)
T ss_dssp             CBCCSEEEEEHHHH-TSCGGGCCEEEEECCH
T ss_pred             hcCCeEEEEeCHHh-ccCcchheeeEEeCCH
Confidence            34568999999999 99773 3898888764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.11  Score=48.30  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---C-----CCCCC-CeEEEcCC-cC---HHHHHH---HHHc
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---Y-----PFFRG-NFYMTIIG-EE---LDYVRE---FASF  220 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l-----~~~~G-d~ivS~~e-H~---~~~ir~---la~~  220 (344)
                      ..+.+.+.++++.+.  +  .+.|+.++|||+....+.   +     ....+ ..+++..+ +|   ...+..   -..+
T Consensus        84 ~~~~~~~~~~~~~~~--~--~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~  159 (404)
T d2byla1          84 VLGEYEEYITKLFNY--H--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY  159 (404)
T ss_dssp             SHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHH
T ss_pred             hHHHHHHhhhhcccc--c--ccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccc
Confidence            445566677888765  2  699999999997765432   1     01122 23443222 23   111100   0111


Q ss_pred             CC-----cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEecc
Q 035915          221 KE-----SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDA  288 (344)
Q Consensus       221 ~G-----~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDA  288 (344)
                      .+     ..+..+|.+      +.+++++.+...    +...|.+ |.+.+ |.+.|    ++.+.+ |+++|+++++|=
T Consensus       160 ~~~~p~~~~~~~~p~~------d~~~l~~~l~~~----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  229 (404)
T d2byla1         160 DGFGPFMPGFDIIPYN------DLPALERALQDP----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE  229 (404)
T ss_dssp             TTSCSCCTTEEEECTT------CHHHHHHHHTST----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             cCCCCCCCCeeEeccc------CHHHHHHhcCCC----CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeec
Confidence            11     224445543      456788887542    3444444 45554 88877    555654 689999999999


Q ss_pred             cccCcCCcc----CCCCCCCCcEEEEccccCCCCC--CCceEEEEEeCCCccc
Q 035915          289 TALVVGEDR----LNLALHRPDFVLCNLDNTQNAQ--PSKITCLLIRKKSFDT  335 (344)
Q Consensus       289 aQa~~G~~~----LDLs~l~~DFvv~S~HK~l~G~--P~GiG~L~Vr~~~~~~  335 (344)
                      +|.-.|..-    .+.-...||+++++  |-|-||  |  +|+++++++..+.
T Consensus       230 V~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p--~~av~~~~~i~~~  278 (404)
T d2byla1         230 IQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYP--VSAVLCDDDIMLT  278 (404)
T ss_dssp             TTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSC--CEEEEECHHHHTT
T ss_pred             cccccccccccchhhhcCCCCCEEEEC--chhhCCCcc--ceeeeechhhhhc
Confidence            997213321    11123468999775  542232  5  8999998876554

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=95.75  E-value=0.13  Score=47.67  Aligned_cols=164  Identities=12%  Similarity=0.077  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh---C----C-CCCC-CeEEEcC-CcCHHHHHHHH--HcCC
Q 035915          155 SIPEIQARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES---Y----P-FFRG-NFYMTII-GEELDYVREFA--SFKE  222 (344)
Q Consensus       155 s~~le~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s---l----~-~~~G-d~ivS~~-eH~~~~ir~la--~~~G  222 (344)
                      ....+.+-+.+.++.+.  +  .+.|+.++|+|+...+..   +    . ...+ ..+++.. .+|........  ....
T Consensus        80 ~~~~~~~~~~~~~~~~~--~--~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~  155 (404)
T d1z7da1          80 SVPLGICERYLTNLLGY--D--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK  155 (404)
T ss_dssp             EHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred             hHHHHHHHHhhhhcccc--c--eeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccc
Confidence            34455666677778776  2  699999999987754431   1    0 1112 2233222 22210000000  0000


Q ss_pred             ---------cEEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEe
Q 035915          223 ---------SKVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLL  286 (344)
Q Consensus       223 ---------~kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlv  286 (344)
                               ..+..+|.+      +.+.+...+..    .+...|.+ |.+.+ |.+.|    ++.+.+ |+++|+++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~  225 (404)
T d1z7da1         156 CTSNFGPFAPQFSKVPYD------DLEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA  225 (404)
T ss_dssp             ----------CEEEECTT------CHHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCCCCCccccccccc------hHHHHHHHhcC----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence                     112223332      34556665543    24455554 44555 88887    766654 6999999999


Q ss_pred             cccccCcCCccC----CCCCCCCcEEEEccccCCCCC-CCceEEEEEeCCCccc
Q 035915          287 DATALVVGEDRL----NLALHRPDFVLCNLDNTQNAQ-PSKITCLLIRKKSFDT  335 (344)
Q Consensus       287 DAaQa~~G~~~L----DLs~l~~DFvv~S~HK~l~G~-P~GiG~L~Vr~~~~~~  335 (344)
                      |=+|+-.|..--    ..-...||.++++  |.|-|| + -+|++++++++.+.
T Consensus       226 DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~-p~~~v~~~~~i~~~  276 (404)
T d1z7da1         226 DEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHY-PISAVLANDDIMLV  276 (404)
T ss_dssp             ECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSS-CCEEEEECHHHHTT
T ss_pred             EcCccCCCcccccccccccCCCCCEEEEc--ccccCCCC-CcccccchHHHHcc
Confidence            999962143211    1123579999876  552222 2 28899999887665

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.67  E-value=0.098  Score=47.44  Aligned_cols=193  Identities=10%  Similarity=-0.037  Sum_probs=99.9

Q ss_pred             cccchHHHHHHhhccCCCChhhhhhHHHHHHHHHHHHHc----CCCCCCCeEEEeCCHHHHHHHHH--hhCCCCCCCeEE
Q 035915          131 RTQLEPSRLLDILTKKSSFPGSFISIPEIQARNKVLKHC----GLPDDEYLVLFTPNYRDAMMLVG--ESYPFFRGNFYM  204 (344)
Q Consensus       131 ~v~~~~~~L~~~L~gnss~~g~~as~~le~AR~~IA~~L----ga~p~ey~VVFTsnaTeAlnlva--~sl~~~~Gd~iv  204 (344)
                      .|.++.+++.+.-. +..|....   -+.+-|+.|++++    +.. ..-..+.|.+++.+..+.+  ..+ ..+|+.++
T Consensus        48 ~V~~A~~~~~~~~~-~~~Y~p~~---G~~~lr~aia~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~gd~V~  121 (394)
T d2ay1a_          48 AVHAAEQRMLETET-TKTYAGLS---GEPEFQKAMGELILGDGLKS-ETTATLATVGGTGALRQALELARM-ANPDLRVF  121 (394)
T ss_dssp             HHHHHHHHHHHHCC-CCCCCCSS---CCHHHHHHHHHHHHGGGCCG-GGEEEEEEEHHHHHHHHHHHHHHH-HCTTCCEE
T ss_pred             HHHHHHHHHhhCCC-CCCCCCCC---CCHHHHHHHHHHHhcccccc-ccccceeccCchHHHHHHHHHhhh-cCCceEEE
Confidence            46666666654311 11232111   1233566666654    221 1114566666665544333  333 35788865


Q ss_pred             -EcCCcCHHHHHHHHHcCCcEEEEEeCCCC-CCccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----H
Q 035915          205 -TIIGEELDYVREFASFKESKVILAPEAWL-DLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----E  276 (344)
Q Consensus       205 -S~~eH~~~~ir~la~~~G~kV~~vp~~~~-~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~  276 (344)
                       ...... + ....++..|.+++.+|.... ....+.+++.+.+...  ..++.++.++--+|  |+.++.+...    .
T Consensus       122 ~p~p~~~-~-y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~l  197 (394)
T d2ay1a_         122 VSDPTWP-N-HVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA--KKGDMVLLHGCCHNPTGANLTLDQWAEIASI  197 (394)
T ss_dssp             EEESCCH-H-HHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHH
T ss_pred             Eeccccc-c-hHHHHHHcCCEEEEecccchhcccccchhHHHHHhhc--ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence             333322 1 12223445888888876432 2234555555554431  13466777765556  9999986443    3


Q ss_pred             HHhCCcEEEecccccCcCCccC---CC----CCCCC-cEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          277 AHRNSWHVLLDATALVVGEDRL---NL----ALHRP-DFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       277 ar~~g~~vlvDAaQa~~G~~~L---DL----s~l~~-DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                      |++++++++.|-+-.-.....-   .+    ..... -.++.|+=|. ++.|. .+|.+.+.....+
T Consensus       198 a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~-~~~~G~R~G~~~~~~~~~~  263 (394)
T d2ay1a_         198 LEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKN-FGIYRERTGCLLALCADAA  263 (394)
T ss_dssp             HHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTT-TTCGGGCEEEEEEECSSHH
T ss_pred             hhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccc-ccCCcccccchhhchhHHH
Confidence            5889999999987754111100   00    00122 2445566676 66552 5888888776543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=95.00  E-value=0.14  Score=47.84  Aligned_cols=161  Identities=11%  Similarity=-0.003  Sum_probs=89.0

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEeCCHHHHHHHHHhh-CCCCCCCeEEEc-CCcC--HH-HH----HHHHHcCCc-------
Q 035915          160 QARNKVLKHCGLPDDEYLVLFTPNYRDAMMLVGES-YPFFRGNFYMTI-IGEE--LD-YV----REFASFKES-------  223 (344)
Q Consensus       160 ~AR~~IA~~Lga~p~ey~VVFTsnaTeAlnlva~s-l~~~~Gd~ivS~-~eH~--~~-~i----r~la~~~G~-------  223 (344)
                      ...+.+.++++-   ...+.|+.++|||+..++.- ..+...+.|++. -.+|  .. .+    ..... .+.       
T Consensus        96 ~la~~~~~~~~~---~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~-~~~p~~~~~~  171 (427)
T d2gsaa_          96 VLAEMVNDAVPS---IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT-LGLPSSPGVP  171 (427)
T ss_dssp             HHHHHHHHHSTT---CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHH-TTCCSCSSSC
T ss_pred             HHHHHHHhhCCc---cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccc-cCCCCCCCCc
Confidence            344555665543   22799999999998876542 112223345542 2233  11 00    00001 111       


Q ss_pred             -----EEEEEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc
Q 035915          224 -----KVILAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL  291 (344)
Q Consensus       224 -----kV~~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa  291 (344)
                           .+...|.      -+.++|++.+...  ..+...|.+ +.+.+ |.+.|    ++.+.+ |+++|+++++|=+|.
T Consensus       172 ~~~~~~~~~~~~------~~~~~le~~~~~~--~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t  243 (427)
T d2gsaa_         172 KKTTANTLTTPY------NDLEAVKALFAEN--PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT  243 (427)
T ss_dssp             HHHHTTEEEECT------TCHHHHHHHHTTS--TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccCccceeccCc------chHHHHHHHHHhC--CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccc
Confidence                 1222222      2567888888642  123444444 44445 88888    777754 689999999999996


Q ss_pred             CcCCccCC---CCCCCCcEEEEccccCCCCCCCceEEEEEeCCCccc
Q 035915          292 VVGEDRLN---LALHRPDFVLCNLDNTQNAQPSKITCLLIRKKSFDT  335 (344)
Q Consensus       292 ~~G~~~LD---Ls~l~~DFvv~S~HK~l~G~P~GiG~L~Vr~~~~~~  335 (344)
                      -.+....-   --...||+++++==-- -|+|  +|+++++++..+.
T Consensus       244 G~r~g~~~~~~~~gi~PDi~~~gK~lg-gG~p--~~a~~~~~~i~~~  287 (427)
T d2gsaa_         244 GFRIAYGGVQEKFGVTPDLTTLGKIIG-GGLP--VGAYGGKREIMQL  287 (427)
T ss_dssp             BTTTBTTCHHHHTTCCCSEEEECGGGG-TTSC--CEEEEECHHHHTT
T ss_pred             cceecccchHHhcCCCHHHHhhhhccC-CCcc--eeeeeehHHHHHH
Confidence            31222111   1135799999986333 3446  5677788776554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.02  Score=52.59  Aligned_cols=168  Identities=10%  Similarity=-0.102  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCCC----CCCeEEEeCCHHHH----HHHHHhhCCCCCCCeEE-EcCCcCHHHHHHHHHcCCcEEEEE
Q 035915          158 EIQARNKVLKHCGLPD----DEYLVLFTPNYRDA----MMLVGESYPFFRGNFYM-TIIGEELDYVREFASFKESKVILA  228 (344)
Q Consensus       158 le~AR~~IA~~Lga~p----~ey~VVFTsnaTeA----lnlva~sl~~~~Gd~iv-S~~eH~~~~ir~la~~~G~kV~~v  228 (344)
                      +.+.|+.||+++.-..    +...|+-|.+++.+    +.+++..+ +.+||.++ ..-.+..  ....++..|.+++.+
T Consensus        72 ~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~pgd~Vlv~~P~y~~--y~~~~~~~G~~~~~v  148 (397)
T d3tata_          72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YFPESGVWVSDPTWEN--HVAIFAGAGFEVSTY  148 (397)
T ss_dssp             CHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH-HCSSCCCEECSSCCTT--HHHHHHTTTCCCEEC
T ss_pred             CHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh-cCCCCcceecccCccc--cHHHHHHcCCEEEEE
Confidence            4558888998875321    11145555555543    33444333 36788854 3222221  223345569999999


Q ss_pred             eCCCCC-CccCHHHHHHHhhhcCCCCCeeEEEEeCccc--cccccHHHHH----HHHhCCcEEEecccccCcCCccCCC-
Q 035915          229 PEAWLD-LRIKGSQLSQYFRRKCKHTPKGLFSYPADIN--GTRYSMHWIS----EAHRNSWHVLLDATALVVGEDRLNL-  300 (344)
Q Consensus       229 p~~~~~-g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN--G~i~Pl~~Ia----~ar~~g~~vlvDAaQa~~G~~~LDL-  300 (344)
                      |.+.++ ...+.+.+.+.+...  ..+++++.++--+|  |..++.+.+.    .|++++++++.|-+-.-   ...+- 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~---l~~~~~  223 (397)
T d3tata_         149 PWYDEATNGVRFNDLLATLKTL--PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQG---FGAGME  223 (397)
T ss_dssp             CCCCTTTSSCCHHHHHHHHTTC--CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTT---SSSCHH
T ss_pred             ecchhhccccchHHHHHHhhhc--ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhh---hccCCc
Confidence            875432 245666666655432  13466677665556  9999996543    35899999999988764   11110 


Q ss_pred             ----------CCCCCcEEEEccccCCCCCCC-ceEEEEEeCCCcc
Q 035915          301 ----------ALHRPDFVLCNLDNTQNAQPS-KITCLLIRKKSFD  334 (344)
Q Consensus       301 ----------s~l~~DFvv~S~HK~l~G~P~-GiG~L~Vr~~~~~  334 (344)
                                ....-=+++.|+-|. |+.|. .+|++++.....+
T Consensus       224 ~~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G~RiG~~~~~~~~~~  267 (397)
T d3tata_         224 EDAYAIRAIASAGLPALVSNSFSKI-FSLYGERVGGLSVMCEDAE  267 (397)
T ss_dssp             HHHHHHHHHHTTTCCCEECBCCHHH-HTBTTTCCBCCEEECSSTT
T ss_pred             ccchhhhhhhhcCCceEEEecCccc-ccccCccccccccchhHHH
Confidence                      111223778899998 77552 3799988776654

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=93.84  E-value=0.49  Score=45.21  Aligned_cols=164  Identities=10%  Similarity=-0.028  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEe---CCHHH---HHHHHHhhC---C-CCCCCeEEEcCCcCHHHHHHHHHcCCcEEE
Q 035915          157 PEIQARNKVLKHCGLPDDEYLVLFT---PNYRD---AMMLVGESY---P-FFRGNFYMTIIGEELDYVREFASFKESKVI  226 (344)
Q Consensus       157 ~le~AR~~IA~~Lga~p~ey~VVFT---snaTe---Alnlva~sl---~-~~~Gd~ivS~~eH~~~~ir~la~~~G~kV~  226 (344)
                      .+-+-+..|+++.|.+     |+=.   .|+|.   |+.++..-.   . ......++....|+.. ........+.+++
T Consensus       107 alfEfQtmi~eLTGMd-----vaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  180 (471)
T d1wyub1         107 LMWELGEYLKALTGMD-----AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS-NPATASMAGYQVR  180 (471)
T ss_dssp             HHHHHHHHHHHHHTCS-----EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH-HHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhCCC-----ccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccc-eeeeeecccceee
Confidence            5678889999999984     4433   24443   444433211   0 0111122333333322 1222334577777


Q ss_pred             EEeCCCCCCccCHHHHHHHhhhcCCCCCeeEEEEeCccc-ccccc-HHHHHH-HHhCCcEEEecccccCcCCc-cCCCCC
Q 035915          227 LAPEAWLDLRIKGSQLSQYFRRKCKHTPKGLFSYPADIN-GTRYS-MHWISE-AHRNSWHVLLDATALVVGED-RLNLAL  302 (344)
Q Consensus       227 ~vp~~~~~g~i~~~~L~~~l~~~~~~~~t~LVa~~avSN-G~i~P-l~~Ia~-ar~~g~~vlvDAaQa~~G~~-~LDLs~  302 (344)
                      .++.+. .+..+.+.+......     .+..+.+...++ |.+-+ ++.+.. +|+.|..+++|++... ... .+.-..
T Consensus       181 ~~~~~~-~~~~~~~~~~~~~~~-----~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~-~~~~l~~p~~  253 (471)
T d1wyub1         181 EIPSGP-EGEVDLEALKRELGP-----HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLN-AIMGWARPGD  253 (471)
T ss_dssp             EECBCT-TSSBCHHHHHHHCST-----TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGG-GTTTTCCHHH
T ss_pred             cccccc-cccccchhhhhhhhc-----cccceeeccCCCcccccchhhhhHHHHHhccccccccccchh-hhhhccccCc
Confidence            777654 466777777766543     355555655554 77655 455554 6889999999887665 222 222234


Q ss_pred             CCCcEEEEccccC-----CCCCCCceEEEEEeCCCcc
Q 035915          303 HRPDFVLCNLDNT-----QNAQPSKITCLLIRKKSFD  334 (344)
Q Consensus       303 l~~DFvv~S~HK~-----l~G~P~GiG~L~Vr~~~~~  334 (344)
                      .+.|.+++..|+.     -|||| |+|++-++++...
T Consensus       254 ~g~div~vg~~q~~G~P~~~GGP-~~G~~a~~~~~~R  289 (471)
T d1wyub1         254 MGFDVVHLNLHKTFTVPHGGGGP-GSGPVGVKAHLAP  289 (471)
T ss_dssp             HTCSEEECCTTTTTCCCCTTSCC-CCCCEEECGGGGG
T ss_pred             ccccccccccccccccccccccc-cccceeehhhhhc
Confidence            6789999999996     15556 8999999887654

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=1  Score=41.51  Aligned_cols=83  Identities=12%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             eeEEEE-eCccc-ccccc-HHHHH----HHHhCCcEEEecccccCcCCccC----CCCCCCCcEEEEccccCC-CCCCCc
Q 035915          255 KGLFSY-PADIN-GTRYS-MHWIS----EAHRNSWHVLLDATALVVGEDRL----NLALHRPDFVLCNLDNTQ-NAQPSK  322 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P-l~~Ia----~ar~~g~~vlvDAaQa~~G~~~L----DLs~l~~DFvv~S~HK~l-~G~P~G  322 (344)
                      ..-|.+ |.+.+ |.+.| -+.+.    .|+++|+++++|=+|.-.|..-.    +.-...||+++++  |.| -|+|  
T Consensus       199 vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P--  274 (425)
T d1sffa_         199 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFP--  274 (425)
T ss_dssp             EEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSC--
T ss_pred             eEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcc--
Confidence            443444 44445 76654 34443    35889999999999983133211    1123679999976  551 2345  


Q ss_pred             eEEEEEeCCCccccccccc
Q 035915          323 ITCLLIRKKSFDTSTSSAH  341 (344)
Q Consensus       323 iG~L~Vr~~~~~~~~~~~~  341 (344)
                      +|+++++++..+......|
T Consensus       275 ~~av~~~~~i~~~~~~~~~  293 (425)
T d1sffa_         275 LAGVTGRAEVMDAVAPGGL  293 (425)
T ss_dssp             CEEEEEEHHHHTTSCTTSB
T ss_pred             eEEEEEcHHHHHhhCCCCC
Confidence            8999999987665333333

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=92.25  E-value=0.32  Score=45.18  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             eeEEEE-eCccc-ccccc----HHHHHH-HHhCCcEEEeccccc-CcCCccCCCC----CCCCcEEEEccccCCCCCCCc
Q 035915          255 KGLFSY-PADIN-GTRYS----MHWISE-AHRNSWHVLLDATAL-VVGEDRLNLA----LHRPDFVLCNLDNTQNAQPSK  322 (344)
Q Consensus       255 t~LVa~-~avSN-G~i~P----l~~Ia~-ar~~g~~vlvDAaQa-~~G~~~LDLs----~l~~DFvv~S~HK~l~G~P~G  322 (344)
                      ..-|.+ |.+.+ |.+.|    ++.+.+ |+++|+++++|=+|. + |..---+.    ...||+++++===. -|.|  
T Consensus       202 iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~-gRtG~~~~~~~~gv~PDi~~~gK~l~-gG~p--  277 (431)
T d1zoda1         202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-GRTGTMFACQRDGVTPDILTLSKTLG-AGLP--  277 (431)
T ss_dssp             EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSTHHHHTCCCSEEEECHHHH-TTSS--
T ss_pred             ccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccc-cccccccccccCCCCcchhccccccc-cccc--
Confidence            333443 33344 78776    666654 689999999999999 4 54432222    35799999974322 3445  


Q ss_pred             eEEEEEeCCCc
Q 035915          323 ITCLLIRKKSF  333 (344)
Q Consensus       323 iG~L~Vr~~~~  333 (344)
                      +++++++++..
T Consensus       278 ~~av~~~~~~~  288 (431)
T d1zoda1         278 LAAIVTSAAIE  288 (431)
T ss_dssp             CEEEEECHHHH
T ss_pred             cceeeeeecch
Confidence            46666665443