Citrus Sinensis ID: 036089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHccccccccccccHcHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHcccccccccEcEEcccccccc
Coil and Loop (DISEMBL)
MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSsfiehgfpdpmpgspccegvnslNVIADTTENKQSVCSCLMDLISTYNTNATAIATLpgfcgvalgfvidpntdcs
Flexible Loop (DISEMBL)
MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Low Complexity Region (SEG)
MQSHKTLIAISISVLLTWLGLFNWALAEVDcttvttlvsscssFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Disordered region (IsUnstruct)
*****TLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVID******
Disordered Region (DISOPRED)
******L**ISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Disordered Region (DISEMBL)
MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Disordered Region (DISPRO)
***HKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDP*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9FIT2	120	Putative non-specific lip	yes	no	0.754	0.741	0.561	4e-27
P24296	113	Non-specific lipid-transf	N/A	no	0.855	0.893	0.342	1e-10
A2ZAT0	118	Non-specific lipid-transf	N/A	no	0.762	0.762	0.361	2e-10
Q7XJ39	118	Non-specific lipid-transf	yes	no	0.762	0.762	0.361	2e-10
Q2QYL2	117	Non-specific lipid-transf	yes	no	0.762	0.769	0.361	3e-10
Q39950	116	Non-specific lipid-transf	N/A	no	0.711	0.724	0.393	3e-10
Q39794	116	Non-specific lipid-transf	N/A	no	0.805	0.818	0.35	3e-10
Q43019	123	Non-specific lipid-transf	N/A	no	0.762	0.731	0.377	4e-10
Q9SW93	113	Stigma/stylar cysteine-ri	N/A	no	0.855	0.893	0.342	2e-09
Q43871	115	Non-specific lipid-transf	N/A	no	0.855	0.878	0.323	3e-09

>sp|Q9FIT2|NLTPE_ARATH Putative non-specific lipid-transfer protein 14 OS=Arabidopsis thaliana GN=LTP14 PE=3 SV=2

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 70/89 (78%)

Query: 30  DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY 89
           DC  V TL+SSC+ F+ +G+PDP+PGS CC+ +  +   +D++E ++ +C+C MDLI+ Y
Sbjct: 29  DCAAVGTLISSCTEFVNYGYPDPIPGSSCCDAMTVIGTYSDSSEKRKWLCNCFMDLINVY 88

Query: 90  NTNATAIATLPGFCGVALGFVIDPNTDCS 118
           N+NATAI+TL GFCGV LGF IDPNTDC+
Sbjct: 89  NSNATAISTLSGFCGVVLGFTIDPNTDCN 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|P24296|NLTP1_WHEAT Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 15  LLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTEN 74
           L+  L     A   +DC  V +LV  C S+++ G   P P   CC+GV +L+  A +  +
Sbjct: 10  LVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQGG---PGPSGQCCDGVKNLHNQARSQSD 66

Query: 75  KQSVCSCLMDLIS-TYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
           +QS C+CL  +    +N N     ++P  CGV L + I  N DCS
Sbjct: 67  RQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCS 111

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Triticum aestivum (taxid: 4565)

>sp|A2ZAT0|NLTP2_ORYSI Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 26  LAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL 85
           +A + C  V + VS C S+   G     P + CC GV SLN  A TT ++++ C+CL ++
Sbjct: 25  MAAISCGQVNSAVSPCLSYARGGS---GPSAACCSGVRSLNSAASTTADRRTACNCLKNV 81

Query: 86  ISTYNT-NATAIATLPGFCGVALGFVIDPNTDCS 118
             + +  NA   A++P  CGV++ + I P+ DCS
Sbjct: 82  AGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XJ39|NLT2A_ORYSJ Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 26  LAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL 85
           +A + C  V + VS C S+   G     P + CC GV SLN  A TT ++++ C+CL ++
Sbjct: 25  MAAISCGQVNSAVSPCLSYARGGS---GPSAACCSGVRSLNSAASTTADRRTACNCLKNV 81

Query: 86  ISTYNT-NATAIATLPGFCGVALGFVIDPNTDCS 118
             + +  NA   A++P  CGV++ + I P+ DCS
Sbjct: 82  AGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QYL2|NLT2B_ORYSJ Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 26  LAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL 85
           +A + C  V + VS C S+   G     P + CC GV SLN  A TT ++++ C+CL ++
Sbjct: 24  MAAISCGQVNSAVSPCLSYARGGS---GPSAACCSGVRSLNSAATTTADRRTACNCLKNV 80

Query: 86  ISTYNT-NATAIATLPGFCGVALGFVIDPNTDCS 118
             + +  NA   A++P  CGV++ + I P+ DCS
Sbjct: 81  AGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39950|NLTP_HELAN Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  V++ ++ C S++  G   P     CC GV SLN  A TT ++Q+ C CL    S 
Sbjct: 26  LSCGQVSSSLAPCISYLTKGGAVP---PACCSGVKSLNSAAKTTPDRQAACGCLK---SA 79

Query: 89  YNT----NATAIATLPGFCGVALGFVIDPNTDCS 118
           YN+    NA   A+ PG CGV++ + I P+TDCS
Sbjct: 80  YNSISGVNAGNAASFPGKCGVSIPYKISPSTDCS 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Helianthus annuus (taxid: 4232)

>sp|Q39794|NLTP_GERHY Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 21  LFNWALAE-VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVC 79
           +F+ + A+ + C  VT+ +  C  ++  G P P     CC GV  LN  A TT ++Q+ C
Sbjct: 17  VFSASYADAISCGQVTSGLVPCFGYLAAGGPVP---PACCNGVRGLNNAAKTTPDRQTAC 73

Query: 80  SCLMDLISTY-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
            CL  +++     N     +LPG CG+++G+ I PN DCS
Sbjct: 74  GCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCS 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gerbera hybrida (taxid: 18101)

>sp|Q43019|NLTP3_PRUDU Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 8/98 (8%)

Query: 25  ALAEVDCTTVTTLVSSCSSFIEHGFP-DPMPGSPCCEGVNSLNVIADTTENKQSVCSCLM 83
           A+A V C  V   ++ C +++ +G   +P     CC GV SL  +A TT ++QS+C+CL 
Sbjct: 27  AMAAVSCGQVVNNLTPCINYVANGGALNP----SCCTGVRSLYSLAQTTADRQSICNCLK 82

Query: 84  DLISTY---NTNATAIATLPGFCGVALGFVIDPNTDCS 118
             ++     N NA   A LPG CGV + + I P+TDC 
Sbjct: 83  QAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCK 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|Q9SW93|SCA_LILLO Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 15  LLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTEN 74
            L  L       + + C  V + ++SC  +   G   P PG  CC GV +LN +A TT +
Sbjct: 9   FLLLLAFLIGTASAITCGQVDSDLTSCLGYARKGGVIP-PG--CCAGVRTLNNLAKTTPD 65

Query: 75  KQSVCSCLMDLIS-TYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
           +Q+ C+CL  L++ +   NA  +A +PG CGV + + I   TDC+
Sbjct: 66  RQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCN 110

Acts as an adhesive agent between the pollen tube wall and the stylar transmitting tract epidermis. Binds a stylar pectin in a pH-dependent manner. Enhances activity of chemocyanin, a diffusible chemotropic factor.

Lilium longiflorum (taxid: 4690)

>sp|Q43871|NLTP8_HORVU Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 14  VLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTE 73
           V L    L   A A + C  V++ +  C+++ +     P  G  CC GV  L  +A +T 
Sbjct: 12  VALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAG--CCSGVKRLAGLARSTA 69

Query: 74  NKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
           +KQ+ C CL  +   Y  NA   A +P  CGV++ + I  + DCS
Sbjct: 70  DKQATCRCLKSVAGAY--NAGRAAGIPSRCGVSVPYTISASVDCS 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
225455420	130	PREDICTED: putative non-specific lipid-t	0.974	0.884	0.576	2e-33
255539519	118	Nonspecific lipid-transfer protein precu	0.974	0.974	0.561	1e-32
147866239	130	hypothetical protein VITISV_014443 [Viti	0.974	0.884	0.559	6e-32
297741092	102	unnamed protein product [Vitis vinifera]	0.788	0.911	0.677	1e-31
224122380	116	predicted protein [Populus trichocarpa]	0.974	0.991	0.559	4e-31
145334869	120	putative non-specific lipid-transfer pro	0.754	0.741	0.561	2e-25
10176924	118	unnamed protein product [Arabidopsis tha	0.754	0.754	0.561	2e-25
297793773	120	lipid binding protein [Arabidopsis lyrat	0.754	0.741	0.561	1e-24
357444043	124	hypothetical protein MTR_1g101320 [Medic	0.796	0.758	0.547	4e-23
2507619	127	PrLTP1 [Pinus radiata]	0.830	0.771	0.408	2e-13

>gi|225455420|ref|XP_002279183.1| PREDICTED: putative non-specific lipid-transfer protein 14-like [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 90/118 (76%), Gaps = 3/118 (2%)

Query: 1   MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCE 60
           M   K +  + I ++L+W       +A +DC+TVT LVS+CS+FI +G PDP+PGSPCC+
Sbjct: 7   MGGQKAVKVMGILMVLSWA---QTTMAAIDCSTVTALVSACSTFITYGAPDPIPGSPCCD 63

Query: 61  GVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
            V  LN IAD+ +N++SVC CLM LI+TYN NATAIATLPGFCG++LGF +DPNTDC+
Sbjct: 64  AVVGLNSIADSIDNRRSVCRCLMGLIATYNPNATAIATLPGFCGISLGFNLDPNTDCN 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539519|ref|XP_002510824.1| Nonspecific lipid-transfer protein precursor, putative [Ricinus communis] gi|223549939|gb|EEF51426.1| Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 90/121 (74%), Gaps = 6/121 (4%)

Query: 1   MQSHK---TLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSP 57
           M+ HK     + I + V L+W  +     A+VDCTTV  L+S+CS+FI +G PDP+PGSP
Sbjct: 1   MKLHKMGAQKVKIGVLVFLSWAAI---VAADVDCTTVAGLLSACSTFINYGSPDPLPGSP 57

Query: 58  CCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDC 117
           CC+ + SLN +A++  N+ SVC C M LI+TYN NATAIATLPGFCG++LGFV+DPNTDC
Sbjct: 58  CCDAMTSLNSVAESGNNRSSVCRCFMGLITTYNPNATAIATLPGFCGISLGFVLDPNTDC 117

Query: 118 S 118
           +
Sbjct: 118 T 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866239|emb|CAN82043.1| hypothetical protein VITISV_014443 [Vitis vinifera]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 88/118 (74%), Gaps = 3/118 (2%)

Query: 1   MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCE 60
           M   K +  + I ++L+W       +A +DC+ VT LVS+CS+FI +G P P+PGSPCC+
Sbjct: 7   MGGQKAVKVMGILMVLSWA---QTTMAAIDCSXVTALVSACSTFITYGAPXPIPGSPCCD 63

Query: 61  GVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
            V  LN IAD+ +N++SVC CLM LI+TYN NATAIATLPGFCG++LGF +DPNTDC+
Sbjct: 64  AVVGLNSIADSIDNRRSVCRCLMGLIATYNPNATAIATLPGFCGISLGFNLDPNTDCN 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741092|emb|CBI31823.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 80/93 (86%)

Query: 26  LAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL 85
           +A +DC+TVT LVS+CS+FI +G PDP+PGSPCC+ V  LN IAD+ +N++SVC CLM L
Sbjct: 1   MAAIDCSTVTALVSACSTFITYGAPDPIPGSPCCDAVVGLNSIADSIDNRRSVCRCLMGL 60

Query: 86  ISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
           I+TYN NATAIATLPGFCG++LGF +DPNTDC+
Sbjct: 61  IATYNPNATAIATLPGFCGISLGFNLDPNTDCN 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122380|ref|XP_002318820.1| predicted protein [Populus trichocarpa] gi|222859493|gb|EEE97040.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 92/118 (77%), Gaps = 3/118 (2%)

Query: 1   MQSHKTLIAISISVLLTWLGLFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCE 60
           M+  K +  + + +LL+W        A+VDCTTVT  +++CS+FI +G PDP+PGSPCC+
Sbjct: 1   MEVQKRMTGVLLLLLLSWA---VTVAADVDCTTVTGFLTACSTFITYGTPDPLPGSPCCD 57

Query: 61  GVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
            + SLNVIA++  +++S+C CLM LI+TYN NATAIATLPGFCG++LGF++DPNTDCS
Sbjct: 58  SMMSLNVIAESGNDRRSICLCLMGLITTYNPNATAIATLPGFCGLSLGFILDPNTDCS 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334869|ref|NP_001078780.1| putative non-specific lipid-transfer protein 14 [Arabidopsis thaliana] gi|218527946|sp|Q9FIT2.2|NLTPE_ARATH RecName: Full=Putative non-specific lipid-transfer protein 14; Short=LTP 14; Flags: Precursor gi|332010174|gb|AED97557.1| putative non-specific lipid-transfer protein 14 [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 70/89 (78%)

Query: 30  DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY 89
           DC  V TL+SSC+ F+ +G+PDP+PGS CC+ +  +   +D++E ++ +C+C MDLI+ Y
Sbjct: 29  DCAAVGTLISSCTEFVNYGYPDPIPGSSCCDAMTVIGTYSDSSEKRKWLCNCFMDLINVY 88

Query: 90  NTNATAIATLPGFCGVALGFVIDPNTDCS 118
           N+NATAI+TL GFCGV LGF IDPNTDC+
Sbjct: 89  NSNATAISTLSGFCGVVLGFTIDPNTDCN 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176924|dbj|BAB10168.1| unnamed protein product [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 70/89 (78%)

Query: 30  DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY 89
           DC  V TL+SSC+ F+ +G+PDP+PGS CC+ +  +   +D++E ++ +C+C MDLI+ Y
Sbjct: 29  DCAAVGTLISSCTEFVNYGYPDPIPGSSCCDAMTVIGTYSDSSEKRKWLCNCFMDLINVY 88

Query: 90  NTNATAIATLPGFCGVALGFVIDPNTDCS 118
           N+NATAI+TL GFCGV LGF IDPNTDC+
Sbjct: 89  NSNATAISTLSGFCGVVLGFTIDPNTDCN 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793773|ref|XP_002864771.1| lipid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310606|gb|EFH41030.1| lipid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 68/89 (76%)

Query: 30  DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY 89
           DC  V TL+SSC+ F+ +G+PDP+PGS CC+ +  +   +D+ E ++ +C+C MDLI+ Y
Sbjct: 29  DCAAVGTLISSCTEFVNYGYPDPIPGSRCCDAMTVIGTYSDSLEKRKWLCNCFMDLINVY 88

Query: 90  NTNATAIATLPGFCGVALGFVIDPNTDCS 118
           N NATAI+TL GFCGV LGF IDPNTDC+
Sbjct: 89  NPNATAISTLSGFCGVVLGFTIDPNTDCN 117

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444043|ref|XP_003592299.1| hypothetical protein MTR_1g101320 [Medicago truncatula] gi|355481347|gb|AES62550.1| hypothetical protein MTR_1g101320 [Medicago truncatula]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 24  WALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTE-NKQSVCSCL 82
           +  A ++C+TV+ L SSCS FI +G PDP PGS CC+ ++ L++IA++   NKQSVC C+
Sbjct: 26  FVFAYIECSTVSQLFSSCSVFINYGTPDPSPGSRCCDAMSGLSIIANSGGGNKQSVCRCV 85

Query: 83  MDLISTYNTNATAIATLPGFCGVALGFVIDPNTDC 117
           M LI  Y  NATAI TLPG CG++LGF I PN++C
Sbjct: 86  MSLIQNYIQNATAIGTLPGLCGISLGFTIIPNSNC 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2507619|gb|AAB80805.1| PrLTP1 [Pinus radiata]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query: 21  LFNWALAEVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCS 80
           L   A A +DC T+   ++SC++++  G P P   S CC+GV SL   A TTE  Q +C+
Sbjct: 26  LHQPASAALDCNTIIQQITSCATYLTTGTPVPQEESSCCQGVQSLYGDATTTEEIQQICT 85

Query: 81  CLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
           CL +    YN N  A+ +LP  CG+ L F I  + DCS
Sbjct: 86  CLKNEAINYNLNDRALQSLPSNCGLQLSFTITRDIDCS 123

Source: Pinus radiata

Species: Pinus radiata

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:4010714066	120	AT5G62065 [Arabidopsis thalian	0.635	0.625	0.56	2.9e-23
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.508	0.535	0.387	1.2e-08
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.516	0.525	0.359	4.2e-08
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.550	0.565	0.358	6.8e-08
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.550	0.546	0.388	1.4e-07
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.508	0.508	0.370	2.9e-07
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.516	0.516	0.365	2.9e-07
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.516	0.5	0.338	4.8e-07
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.567	0.563	0.347	1.3e-06
TAIR|locus:2827393	121	AT2G15325 [Arabidopsis thalian	0.584	0.570	0.289	5.5e-06

TAIR|locus:4010714066 AT5G62065 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 42/75 (56%), Positives = 60/75 (80%)

Query:    44 FIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFC 103
             F+ +G+PDP+PGS CC+ +  +   +D++E ++ +C+C MDLI+ YN+NATAI+TL GFC
Sbjct:    43 FVNYGYPDPIPGSSCCDAMTVIGTYSDSSEKRKWLCNCFMDLINVYNSNATAISTLSGFC 102

Query:   104 GVALGFVIDPNTDCS 118
             GV LGF IDPNTDC+
Sbjct:   103 GVVLGFTIDPNTDCN 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query:    57 PCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGFVIDPNTD 116
             PCC GV  LN +A TT ++Q  C CL    +    N +  + LPG CGV++ + I  +T+
Sbjct:    50 PCCAGVKKLNGMAQTTPDRQQACRCLQS--AAKGVNPSLASGLPGKCGVSIPYPISTSTN 107

Query:   117 CS 118
             C+
Sbjct:   108 CA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query:    58 CCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAI---ATLPGFCGVALGFVIDPN 114
             CC G+  L+  A +  +KQ VC C+  ++   + ++  +   A LPG CGV L + IDP+
Sbjct:    50 CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPS 109

Query:   115 TDCS 118
             T+C+
Sbjct:   110 TNCN 113

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query:    53 MPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVALGFVI 111
             +P S CC GV +LN +A TT ++Q  C C+     + +  N +  + LPG CGV++ + I
Sbjct:    47 VPPS-CCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPI 105

Query:   112 DPNTDCS 118
               +T+C+
Sbjct:   106 SMSTNCN 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query:    52 PMPGSPCCEGVNSLNVIADTTENKQSVCSCL-MDLISTYNTNATAIATLPGFCGVALGFV 110
             P+P S CC GV SL  +A TT +++ VC CL +        N   +A LP  CGV++ + 
Sbjct:    47 PLP-SQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYP 105

Query:   111 IDPNTDC 117
             I  +T+C
Sbjct:   106 ISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query:    58 CCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT--NATAIATLPGFCGVALGFVIDPNT 115
             CC GV +LN IA TT ++Q  C+C+        +  NA   A +P  CGV + + I  +T
Sbjct:    53 CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTST 112

Query:   116 DC 117
             +C
Sbjct:   113 NC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query:    58 CCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT--NATAIATLPGFCGVALGFVIDPNT 115
             CC GV  LN +A TT ++Q  C C+        +  NA   A LPG C V + + I   T
Sbjct:    53 CCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISART 112

Query:   116 DCS 118
             +C+
Sbjct:   113 NCN 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query:    58 CCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVALGFVIDPNTD 116
             CC GV  LN +A ++ +++  C CL  L ++  + N   ++ +PG CGV++ F I  +T+
Sbjct:    58 CCSGVQGLNGLARSSPDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTN 117

Query:   117 CS 118
             C+
Sbjct:   118 CN 119

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 25/72 (34%), Positives = 33/72 (45%)

Query:    48 GFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY-NTNATAIATLPGFCGVA 106
             G P PM    CC G+NSL   A    ++Q  C+CL  + +T    N      LP  CGV 
Sbjct:    49 GNPSPM----CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVN 104

Query:   107 LGFVIDPNTDCS 118
             +G       DC+
Sbjct:   105 IGVPFSKTVDCN 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2827393 AT2G15325 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query:    50 PDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNTNATAIATLPGFCGVALGF 109
             P+  P   CC G++ +N    T +++  +C CL    +  + +      LP  C VAL  
Sbjct:    49 PEAKPSPECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSADQYKFDNLPKLCNVALFA 108

Query:   110 VIDPNTDCS 118
              + P  DCS
Sbjct:   109 PVGPKFDCS 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIT2	NLTPE_ARATH	No assigned EC number	0.5617	0.7542	0.7416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	4e-25
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	0.004

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 90.1 bits (224), Expect = 4e-25
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  VT+L++ C  ++  G   P P   CC GV SLN +A TT ++Q+ C+CL    + 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGG--GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG 58

Query: 89  YNT-NATAIATLPGFCGVALGFVIDPNTDCS 118
            +  N    A LPG CGV++ + I P+TDCS
Sbjct: 59  ISGLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 20/93 (21%)

Query: 31  CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCL------MD 84
           C  V   ++ C S++  G     P   CC  +  LN          + C CL      + 
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLG 51

Query: 85  LISTYNTNATAIATLPGFCGVALGFVIDPNTDC 117
           ++     NA   A+LP  CGV       P TDC
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPP-----PYTDC 79

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.94
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.56
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.47
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.41
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.23
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.04
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	99.0

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.94  E-value=1.2e-27  Score=157.16  Aligned_cols=88  Identities=41%  Similarity=0.871  Sum_probs=81.8

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      .+|.++...|.||++|++++  +..|+++||++++++++.++|+.|++++|+|+++....++ +|++|+.+||++|||++
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~--~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGG--GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCC--CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCC
Confidence            36999999999999999983  5789999999999999999999999999999998877776 59999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      +|+|+++|||+
T Consensus        79 ~~~i~~~~dC~   89 (89)
T cd01960          79 PYPISPSTDCS   89 (89)
T ss_pred             CCCCCCCCCCC
Confidence            99999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.56  E-value=1.9e-15  Score=96.03  Aligned_cols=69  Identities=22%  Similarity=0.546  Sum_probs=53.6

Q ss_pred             ChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccCC-CHHHHhccccccCCCCCC
Q 036089           31 CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVALGF  109 (118)
Q Consensus        31 C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~~-n~~~a~~LP~~Cgv~~p~  109 (118)
                      |+.....|+||++||+++++...|++.||++||++        +++  |+|.+.....+++ |.+||++||++|||++|.
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~   70 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP   70 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence            55555789999999998432356999999999985        333  8887665545544 999999999999998764

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.47  E-value=2.5e-14  Score=87.78  Aligned_cols=61  Identities=28%  Similarity=0.592  Sum_probs=51.1

Q ss_pred             ccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCcccc-CC-CHHHHhccccccCC
Q 036089           38 VSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY-NT-NATAIATLPGFCGV  105 (118)
Q Consensus        38 L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~-~~-n~~~a~~LP~~Cgv  105 (118)
                      |.||++|+++  +...||++||++++++++.     +++++|.++++..... +. |.+++.+||++|||
T Consensus         1 L~~C~~y~~~--~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTG--GATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcC--CCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            6799999998  3578999999999999753     6789999998765544 34 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.41  E-value=3.1e-14  Score=93.39  Aligned_cols=72  Identities=22%  Similarity=0.526  Sum_probs=47.0

Q ss_pred             cCCCChhcccCcccc---HHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCc-cccCCCHHHHhccccc
Q 036089           27 AEVDCTTVTTLVSSC---SSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLI-STYNTNATAIATLPGF  102 (118)
Q Consensus        27 a~~~C~~v~~~L~pC---l~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~-~~~~~n~~~a~~LP~~  102 (118)
                      ...+|.   ..|.+|   +.|+.+   ...||++||+++|++.+     .|+.++|..+++.. ..+++|.+|+.+||++
T Consensus        18 ~~~~c~---~~l~~c~~~~~~~~~---~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~   86 (96)
T PF14368_consen   18 CCCSCA---NSLLPCCPCLCYVTG---GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGFGINVTRALALPAA   86 (96)
T ss_dssp             BTTB-H---CCCCHH--HHHHHCC--------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHH
T ss_pred             CcchhH---HHHhccccchhccCC---CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccCCcCHHHHHHHHHH
Confidence            345674   457776   788875   67899999999999843     35678888887765 4455699999999999


Q ss_pred             cCCCCCC
Q 036089          103 CGVALGF  109 (118)
Q Consensus       103 Cgv~~p~  109 (118)
                      ||++.+.
T Consensus        87 Cg~~~~~   93 (96)
T PF14368_consen   87 CGVPVPP   93 (96)
T ss_dssp             CTSS-S-
T ss_pred             cCCCCCC
Confidence            9999876

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.23  E-value=8.2e-12  Score=78.18  Aligned_cols=60  Identities=20%  Similarity=0.440  Sum_probs=47.1

Q ss_pred             ccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC--CCHHHHhccccccCCCCC
Q 036089           35 TTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN--TNATAIATLPGFCGVALG  108 (118)
Q Consensus        35 ~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~--~n~~~a~~LP~~Cgv~~p  108 (118)
                      .+.|.+|++|+++   +..||++||+.+|+.         ..++|..+++.  .++  +|.++|++||++|||++|
T Consensus         3 ~~~L~~C~~ai~~---~~~Ps~~CC~~Lk~~---------~~CLC~y~~~p--~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           3 PTQLSPCLPAILG---GSPPSAACCAKLKEQ---------QSCLCQYAKNP--SLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhhcccCHHHHhC---CCCCCHHHHHHHhcC---------CCCeeeeecCc--cHHhhcCcHHHHHHHHHcCCCCC
Confidence            3589999999997   468999999999983         24566666553  332  488999999999999875

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.04  E-value=2.4e-10  Score=71.16  Aligned_cols=70  Identities=31%  Similarity=0.664  Sum_probs=52.5

Q ss_pred             ChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEecc--CccccC----CCHHHHhccccccC
Q 036089           31 CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMD--LISTYN----TNATAIATLPGFCG  104 (118)
Q Consensus        31 C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~--~~~~~~----~n~~~a~~LP~~Cg  104 (118)
                      |..+...+.+|.+|++++.....|+.+||++++.++         ...|+|...  ....+.    .+..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            566677788999999983224678999999999984         135777643  222232    28999999999999


Q ss_pred             CCCCC
Q 036089          105 VALGF  109 (118)
Q Consensus       105 v~~p~  109 (118)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99875

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=99.00  E-value=3.6e-12  Score=82.99  Aligned_cols=71  Identities=24%  Similarity=0.599  Sum_probs=54.2

Q ss_pred             hhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCcccc-----------CCCHHHHhccc
Q 036089           32 TTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTY-----------NTNATAIATLP  100 (118)
Q Consensus        32 ~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~-----------~~n~~~a~~LP  100 (118)
                      ..+...+.+|.+|+++  ....|+.+||++|+++.        +++.|..++..+.+.           ..+..+|.+||
T Consensus         9 ~~~~~~l~~c~~~~~~--~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP   78 (90)
T PF00234_consen    9 SPVQVRLSPCLPYLQG--GCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP   78 (90)
T ss_dssp             GTTSSHHHGGHHHHTT--SSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred             hhccccccccHHHHhc--ccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3333568999999998  35579999999999994        346666676554442           23899999999


Q ss_pred             cccCCCCCCCCCCCCCC
Q 036089          101 GFCGVALGFVIDPNTDC  117 (118)
Q Consensus       101 ~~Cgv~~p~~is~~~dC  117 (118)
                      +.|||.+++     |||
T Consensus        79 ~~C~v~~~~-----~~C   90 (90)
T PF00234_consen   79 SMCNVSPPY-----TDC   90 (90)
T ss_dssp             HHTTSSSSS-----S-G
T ss_pred             HHCCCCCCC-----CCC
Confidence            999999998     776

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		7e-08
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		3e-07
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		5e-07
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		6e-07
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		6e-07
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		6e-07
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		6e-07
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		2e-06
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		4e-06

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 54  PGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVALGFVID 112
           P + CC GV SLN  A TT ++++ C+CL +  +  +  NA   A++P  CGV++ + I 
Sbjct: 25  PSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTIS 84
Query: 113 PNTDCS 118
            +TDCS
Sbjct: 85  TSTDCS 90

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 58  CCEGVNSLNVIADTTENKQSVCSCLMDL-ISTYNTNATAIATLPGFCGVALGFVIDPNTD 116
           CC G+ ++N +A TT ++Q+ C+CL  L  S    N    A LPG CGV++ + I  +T+
Sbjct: 28  CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPYKISASTN 87
Query: 117 CS 118
           C+
Sbjct: 88  CA 89

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 44  FIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIS-TYNTNATAIATLPGF 102
           +++ G   P P   CC GV  L+  A ++ ++Q+VC+CL  +    +N N    A++P  
Sbjct: 16  YVQGG---PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSK 72
Query: 103 CGVALGFVIDPNTDCS 118
           C V + + I P+ DCS
Sbjct: 73  CNVNVPYTISPDIDCS 88

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 44  FIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIS-TYNTNATAIATLPGF 102
           +++ G   P P   CC GV  L+  A ++ ++Q+VC+CL  +    +N N    A++P  
Sbjct: 16  YVQGG---PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSK 72
Query: 103 CGVALGFVIDPNTDCS 118
           C V + + I P+ DCS
Sbjct: 73  CNVNVPYTISPDIDCS 88

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 52  PMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIS-TYNTNATAIATLPGFCGVALGFV 110
           P P   CC+GV +L+  A +  ++QS C+CL  +    +N N     ++P  CGV L + 
Sbjct: 21  PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT 80
Query: 111 IDPNTDCS 118
           I  N DCS
Sbjct: 81  ISLNIDCS 88

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 52  PMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST-YNTNATAIATLPGFCGVALGFV 110
           P P   CC+GV +L+  A +  ++QS C+CL  +    +N N     ++P  CGV L + 
Sbjct: 21  PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT 80
Query: 111 IDPNTDCS 118
           I  N DCS
Sbjct: 81  ISLNIDCS 88

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 54  PGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVALGFVID 112
           P + CC GV SL   A TT ++++ C+CL +        NA   A++P  CGV++ + I 
Sbjct: 23  PSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTIS 82
Query: 113 PNTDCS 118
            + DCS
Sbjct: 83  ASIDCS 88

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 48  GFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL---ISTYNTNATAIATLPGFCG 104
           G P P P   CC GV  L   A+TT ++Q+ C+CL      I+  NTN    A LPG CG
Sbjct: 20  GGPGPSP--QCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNA--AALPGKCG 75
Query: 105 VALGFVIDPNTDCS 118
           V + + I   T+C+
Sbjct: 76  VNIPYKISTTTNCN 89

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 54  PGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVALGFVID 112
           P   CC GV +L   A TTE++Q  C+CL       +  N    A LP  CGV + + I 
Sbjct: 23  PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKIS 82
Query: 113 PNTDCS 118
           P+TDCS
Sbjct: 83  PSTDCS 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	6e-22
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	6e-22
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	7e-22
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	1e-21
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	2e-21

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 81.8 bits (202), Expect = 6e-22
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  V + ++ C S+         P + CC GV SLN  A TT ++++ C+CL +  + 
Sbjct: 2   ISCGQVASAIAPCISYARGQ--GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59

Query: 89  Y-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
               NA   A++P  CGV++ + I  +TDCS
Sbjct: 60  VSGLNAGNAASIPSKCGVSIPYTISTSTDCS 90

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 81.8 bits (202), Expect = 6e-22
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  VT+ ++ C +++ +  P       CC GV +L   A TTE++Q  C+CL      
Sbjct: 2   ITCGQVTSNLAPCLAYLRNTGPLG----RCCGGVKALVNSARTTEDRQIACTCLKSAAGA 57

Query: 89  Y-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
               N    A LP  CGV + + I P+TDCS
Sbjct: 58  ISGINLGKAAGLPSTCGVNIPYKISPSTDCS 88

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 81.8 bits (202), Expect = 7e-22
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  V++ ++ C  ++  G         CC G+ ++N +A TT ++Q+ C+CL  L ++
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGA---VPPACCNGIRNVNNLARTTPDRQAACNCLKQLSAS 58

Query: 89  Y-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
               N    A LPG CGV++ + I  +T+C+
Sbjct: 59  VPGVNPNNAAALPGKCGVSIPYKISASTNCA 89

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 80.7 bits (199), Expect = 1e-21
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           +DC  V +LV  C S+++ G   P P   CC+GV +L+  A +  ++QS C+CL  +   
Sbjct: 1   IDCGHVDSLVRPCLSYVQGG---PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARG 57

Query: 89  Y-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
             N N     ++P  CGV L + I  N DCS
Sbjct: 58  IHNLNEDNARSIPPKCGVNLPYTISLNIDCS 88

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 80.3 bits (198), Expect = 2e-21
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  V   ++ C  F++ G         CC GV ++   + TT ++++VCSCL      
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGV---VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGA 57

Query: 89  Y-NTNATAIATLPGFCGVALGFVIDPNTDCS 118
               N      LPG CGV + + I  +T+C+
Sbjct: 58  VRGINPNNAEALPGKCGVNIPYKISTSTNCN 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.96
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.95
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.95
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.95
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.95
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.94
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.61
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.44
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.4
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	88.38

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.96  E-value=1e-31  Score=177.66  Aligned_cols=88  Identities=34%  Similarity=0.757  Sum_probs=81.8

Q ss_pred             CCCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccCC-CHHHHhccccccCCC
Q 036089           28 EVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVA  106 (118)
Q Consensus        28 ~~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~~-n~~~a~~LP~~Cgv~  106 (118)
                      +++|+++...|.||++||+|   ++.|+++||+|+|+|++.++|+.|||++|+|+|+.+..++. |.+||.+||++|||+
T Consensus         1 AisC~~v~~~L~pCl~Yv~g---~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTG---GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTT---SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcC---CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCC
Confidence            46899999999999999998   34699999999999999999999999999999987777755 999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 036089          107 LGFVIDPNTDCS  118 (118)
Q Consensus       107 ~p~~is~~~dC~  118 (118)
                      +|||||+++||+
T Consensus        78 ~p~~Is~~~dC~   89 (93)
T 2ljo_A           78 IPYKISTTTNCN   89 (93)
T ss_dssp             CSSCCSTTCCGG
T ss_pred             CCCCCCCCCCCC
Confidence            999999999996

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.95  E-value=4.3e-30  Score=169.72  Aligned_cols=88  Identities=34%  Similarity=0.734  Sum_probs=81.6

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccCC-CHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYNT-NATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~~-n~~~a~~LP~~Cgv~~  107 (118)
                      ++|+++...|.||++|+++  ++..|+++||+|||++++.++|++|||..|+|++.....++. |.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~--~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~   79 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARG--QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTT--SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred             CChHHHHHhccCcHHHHcC--CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCC
Confidence            6899999999999999998  356799999999999999999999999999999877667754 9999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      |||||++|||+
T Consensus        80 p~~is~~~dC~   90 (93)
T 1afh_A           80 PYTISTSTDCS   90 (93)
T ss_dssp             SSCCSTTCCSS
T ss_pred             CCCCCCCCCCc
Confidence            99999999996

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.95  E-value=5.4e-30  Score=168.38  Aligned_cols=87  Identities=36%  Similarity=0.779  Sum_probs=80.2

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      ++|+++...|.||++|++++  +. |+++||++||++++.|+|++|||..|+|+++.+..++ +|.++|++||++|||++
T Consensus         1 i~C~~v~~~L~pCl~y~~~~--~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~   77 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGG--PG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNL   77 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC--SC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCC
T ss_pred             CCHHHHHHhhcccHHHHcCC--CC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCC
Confidence            47999999999999999983  44 9999999999999999999999999999988777775 49999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      ||+||++|||+
T Consensus        78 p~~is~~~dC~   88 (90)
T 1bwo_A           78 PYTISLNIDCS   88 (90)
T ss_dssp             SSCCCTTCCGG
T ss_pred             CCCCCCCCCCC
Confidence            99999999996

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.95  E-value=8.1e-30  Score=167.88  Aligned_cols=86  Identities=37%  Similarity=0.763  Sum_probs=79.6

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      .+|+++...|.||++|++++  +. |+ +||+|||++++.|+|++|||..|+|+++.+..++ +|.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~--~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~   77 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNT--GP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNI   77 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTS--SC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCC--CC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCC
Confidence            68999999999999999983  55 88 9999999999999999999999999987767774 59999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      ||+||++|||+
T Consensus        78 p~~is~~~dC~   88 (91)
T 1t12_A           78 PYKISPSTDCS   88 (91)
T ss_dssp             SSCSSSSSCCT
T ss_pred             CCCCCCCCCCc
Confidence            99999999996

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.95  E-value=2.7e-29  Score=165.31  Aligned_cols=87  Identities=30%  Similarity=0.684  Sum_probs=80.1

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      ++|+++...|.||++|++++  +. |+++||++||++++.|+|+.|||..|+|+++.+..++ +|.++|++||++|||++
T Consensus         1 i~C~~v~~~L~pCl~yv~~~--~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~   77 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKG--GV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNI   77 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSC--SC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHhccCcHHHHhCC--CC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCC
Confidence            47999999999999999983  44 9999999999999999999999999999988777774 59999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      ||+||++|||+
T Consensus        78 p~~is~~~dC~   88 (91)
T 1siy_A           78 PYKISTSTNCN   88 (91)
T ss_dssp             SSCSCTTSCSS
T ss_pred             CCCCCCCCCCc
Confidence            99999999996

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.94  E-value=3.6e-29  Score=164.97  Aligned_cols=87  Identities=31%  Similarity=0.759  Sum_probs=80.0

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      ++|+++...|.||++|++++   ..|+++||++||+|++.|+|++||+..|+|++.....++ +|.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~---~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~   78 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGG---GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSI   78 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHC---SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCC---CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCC
Confidence            57999999999999999983   358899999999999999999999999999987767774 49999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      ||+||++|||+
T Consensus        79 p~~is~~~dC~   89 (92)
T 2alg_A           79 PYKISASTNCA   89 (92)
T ss_dssp             SSCSSTTSCGG
T ss_pred             CCCCCCCCCCc
Confidence            99999999996

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.61  E-value=4.1e-17  Score=103.74  Aligned_cols=72  Identities=18%  Similarity=0.457  Sum_probs=58.2

Q ss_pred             CCCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccC---ccccCCCHHHHhccccccC
Q 036089           28 EVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDL---ISTYNTNATAIATLPGFCG  104 (118)
Q Consensus        28 ~~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~---~~~~~~n~~~a~~LP~~Cg  104 (118)
                      ..+|+++...|.||++|++++ +...||++||++||+.        |+  .|+|.+..   ...+++|.++|++||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~-~~~~Ps~~CC~~lk~~--------~~--~ClC~~~~~~~~~~~gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKE-NPTSPSQPCCTALQHA--------DF--ACLCGYKNSPWLGSFGVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSS-SCCCCCHHHHHHHTTC--------CH--HHHHTTTTCHHHHHHTBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCC-CCCCCCHHHHHHHHhc--------Cc--CCcCcccCCcchhhcCcCHHHHHHHHHHcC
Confidence            467999999999999999973 2468999999999982        34  67777544   4455459999999999999


Q ss_pred             CCCCCC
Q 036089          105 VALGFV  110 (118)
Q Consensus       105 v~~p~~  110 (118)
                      |++||.
T Consensus        71 v~~p~~   76 (77)
T 2rkn_A           71 LANAPT   76 (77)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            998873

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.44  E-value=9.3e-15  Score=90.74  Aligned_cols=60  Identities=20%  Similarity=0.395  Sum_probs=47.2

Q ss_pred             ccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceE--eccCccccCCCHHHHhccccccCCCCC
Q 036089           35 TTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSC--LMDLISTYNTNATAIATLPGFCGVALG  108 (118)
Q Consensus        35 ~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~C--lk~~~~~~~~n~~~a~~LP~~Cgv~~p  108 (118)
                      ...|.||++|+++   +..||++||++||+.           ..|+|  +++.....++|.++|++||++|||++|
T Consensus         4 ~~~L~pC~~~v~~---~~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            4 ASQLAVCASAILS---GAKPSGECCGNLRAQ-----------QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             SSTTHHHHHHHTT---CCCCCHHHHHHHHHH-----------SSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhhcccCHHHHcC---CCCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            3589999999998   357999999999973           35777  665432222499999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.40  E-value=2.9e-14  Score=88.98  Aligned_cols=63  Identities=22%  Similarity=0.478  Sum_probs=48.8

Q ss_pred             CChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceE--eccCccccCCCHHHHhccccccCCCC
Q 036089           30 DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSC--LMDLISTYNTNATAIATLPGFCGVAL  107 (118)
Q Consensus        30 ~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~C--lk~~~~~~~~n~~~a~~LP~~Cgv~~  107 (118)
                      +|+  .+.|.||++||++   +..||++||++||+.           ..|+|  +++.....++|.++|++||++|||++
T Consensus         2 ~C~--~~~L~pC~~~v~~---~~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~   65 (69)
T 1l6h_A            2 GCN--AGQLTVCTGAIAG---GARPTAACCSSLRAQ-----------QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIAL   65 (69)
T ss_dssp             CST--TTTHHHHHHHHTT---CCSTTHHHHHHHHHH-----------HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCS
T ss_pred             CCC--hhhcccCHHHHcC---CCCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCC
Confidence            465  4589999999998   357999999999974           25777  66543222359999999999999987


Q ss_pred             C
Q 036089          108 G  108 (118)
Q Consensus       108 p  108 (118)
                      |
T Consensus        66 P   66 (69)
T 1l6h_A           66 P   66 (69)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=88.38  E-value=0.017  Score=46.30  Aligned_cols=52  Identities=21%  Similarity=0.560  Sum_probs=31.6

Q ss_pred             hhhhHHhhhhhhhcccccCccccceEeccCccc----c-C---C-CH-HHHhccccccCCCCC--CCCCC
Q 036089           56 SPCCEGVNSLNVIADTTENKQSVCSCLMDLIST----Y-N---T-NA-TAIATLPGFCGVALG--FVIDP  113 (118)
Q Consensus        56 ~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~----~-~---~-n~-~~a~~LP~~Cgv~~p--~~is~  113 (118)
                      .+||+-|+.+.+      ..+|-|.-++..+..    . +   . .. .+|..||..||+..|  .+|++
T Consensus       429 ~~cc~~l~~~~~------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCCc------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            789999998731      024444445543221    0 1   1 23 459999999999976  56655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	6e-20
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	4e-18

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 75.6 bits (186), Expect = 6e-20
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLI-S 87
           ++C  V + +  C ++++ G   P P   CC GV  L+  A ++ ++Q+VC+CL  +   
Sbjct: 1   LNCGQVDSKMKPCLTYVQGG---PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARG 57

Query: 88  TYNTNATAIATLPGFCGVALGFVIDPNTDCS 118
            +N N    A++P  C V + + I P+ DCS
Sbjct: 58  IHNLNLNNAASIPSKCNVNVPYTISPDIDCS 88

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 71.1 bits (174), Expect = 4e-18
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 29  VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLIST 88
           + C  V + ++ C S+         P + CC GV SLN  A TT ++++ C+CL +  + 
Sbjct: 2   ISCGQVASAIAPCISYARGQ--GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59

Query: 89  YNT-NATAIATLPGFCGVALGFVIDPNTDCS 118
            +  NA   A++P  CGV++ + I  +TDCS
Sbjct: 60  VSGLNAGNAASIPSKCGVSIPYTISTSTDCS 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.95
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.77
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.75
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	84.52

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=4.5e-31  Score=172.93  Aligned_cols=89  Identities=34%  Similarity=0.725  Sum_probs=82.2

Q ss_pred             CCCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCC
Q 036089           28 EVDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVA  106 (118)
Q Consensus        28 ~~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~  106 (118)
                      +++|+++...|.||++||+|  ++..|+++||+|+++|++.++|+.|||++|+|+++.+..+. +|.+|+.+||++||++
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg--~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~   78 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARG--QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS   78 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTT--CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHhhhhHHHHhC--CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence            46899999999999999998  46789999999999999999999999999999998766554 5999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 036089          107 LGFVIDPNTDCS  118 (118)
Q Consensus       107 ~p~~is~~~dC~  118 (118)
                      +|||||++|||+
T Consensus        79 l~~pis~~~dCs   90 (93)
T d1fk5a_          79 IPYTISTSTDCS   90 (93)
T ss_dssp             CSSCCSTTCCGG
T ss_pred             CCCCCCCCCCCC
Confidence            999999999996

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.95  E-value=1.1e-30  Score=170.42  Aligned_cols=87  Identities=30%  Similarity=0.754  Sum_probs=80.4

Q ss_pred             CCChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-CCHHHHhccccccCCCC
Q 036089           29 VDCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-TNATAIATLPGFCGVAL  107 (118)
Q Consensus        29 ~~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~n~~~a~~LP~~Cgv~~  107 (118)
                      ++|+++...|+||++||+|   +++|+++||+|+++|++.++|+.|||++|+|+++.+..++ +|.+|+.+||++|||++
T Consensus         1 i~C~~v~~~l~pCl~Yl~g---~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~   77 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQG---GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNV   77 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTT---CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHhhHHHHcC---CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCC
Confidence            4799999999999999998   3579999999999999999999999999999998766654 49999999999999999


Q ss_pred             CCCCCCCCCCC
Q 036089          108 GFVIDPNTDCS  118 (118)
Q Consensus       108 p~~is~~~dC~  118 (118)
                      |||||++|||+
T Consensus        78 p~pis~~~dC~   88 (91)
T d1mida_          78 PYTISPDIDCS   88 (91)
T ss_dssp             CSCCCTTCCGG
T ss_pred             CCCCCCCCCCC
Confidence            99999999996

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.77  E-value=5.9e-10  Score=67.35  Aligned_cols=62  Identities=23%  Similarity=0.498  Sum_probs=49.5

Q ss_pred             ChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC-C-CHHHHhccccccCCCCC
Q 036089           31 CTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN-T-NATAIATLPGFCGVALG  108 (118)
Q Consensus        31 C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~-~-n~~~a~~LP~~Cgv~~p  108 (118)
                      |+.  ++|.+|++.+++   +..||.+||+-+|+..         .++|..+|+.  .+. + |..+++.+-+.|||++|
T Consensus         2 C~p--~~L~~C~~Ai~~---g~~PS~~CC~kLkeQ~---------~ClC~Y~kdP--~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQA--SQLAVCASAILS---GAKPSGECCGNLRAQQ---------GCFCQYAKDP--TYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCG--GGGGGGHHHHHH---CCCCCHHHHHHHHHHG---------GGHHHHTTCT--TTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             CCh--hhccccHHHHhc---CCCCcHHHHHHHHhcC---------CccceecCCc--cHHHHcCCHHHHHHHHhcCCCCC
Confidence            553  479999999998   5689999999999853         3666666665  453 3 88999999999999876

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.75  E-value=6.3e-10  Score=67.61  Aligned_cols=63  Identities=22%  Similarity=0.532  Sum_probs=50.1

Q ss_pred             CChhcccCccccHHHHhcCCCCCCCChhhhHHhhhhhhhcccccCccccceEeccCccccC--CCHHHHhccccccCCCC
Q 036089           30 DCTTVTTLVSSCSSFIEHGFPDPMPGSPCCEGVNSLNVIADTTENKQSVCSCLMDLISTYN--TNATAIATLPGFCGVAL  107 (118)
Q Consensus        30 ~C~~v~~~L~pCl~yv~g~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~C~Clk~~~~~~~--~n~~~a~~LP~~Cgv~~  107 (118)
                      .|+.  +.|.||++.+++   +..||.+||+-+|+..         .++|..+|+.  .+.  +|..+++.+-..|||++
T Consensus         2 ~C~p--~~L~~C~~ai~~---g~~PS~~CC~kLkeQ~---------~ClC~Y~k~P--~~~~yv~spnarkv~~aCgvp~   65 (69)
T d1l6ha_           2 GCNA--GQLTVCTGAIAG---GARPTAACCSSLRAQQ---------GCFCQFAKDP--RYGRYVNSPNARKAVSSCGIAL   65 (69)
T ss_dssp             CSTT--TTHHHHHHHHTT---CCSTTHHHHHHHHHHH---------HHHHHHTTCS--SHHHHTTTTTGGGCCCCCSSCS
T ss_pred             CCCh--hhccccHHHHhC---CCCCcHHHHHHHHhcC---------CccceeccCc--cHHHHcCCHHHHHHHHhcCCCC
Confidence            4664  489999999998   5679999999999853         3666666665  442  48889999999999987


Q ss_pred             C
Q 036089          108 G  108 (118)
Q Consensus       108 p  108 (118)
                      |
T Consensus        66 P   66 (69)
T d1l6ha_          66 P   66 (69)
T ss_dssp             C
T ss_pred             C
Confidence            6