Citrus Sinensis ID: 036226

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSDHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVSDAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL
ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccHHHHHHHcccccccHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEEcccccEEEEccccccccccccccEEEEEccccEEEccEEEEccccccccEEEEEEcccEEEEEcEEEEcccccEEcccccEEEEccEEEEEcEEEEccccEEEcccEEEEcccccccccEEEccccccccccEEEEEEccEEEccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEccHHHHHHccHHHHHccccccccccccccccc
VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGItrnndsdrveaennghgRVISAAIKAVCDVsmykdtcydslskgasnssqmqpEELFKLAIKVASNElskasdkffsdhngtsddnnnnnIMFLDALGNCRELLSIAWDSldsslssgksvSDAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRrllgepphewlrpedrkllqsPAENWKKNANavvgkdrfakYKTINDAlravpdkskkKFIIYVKKGvyvenvriekpkwnvvmigdgmnetivsghrnfidgtptfstatfAVFGQGfvardmgfrntagpsKHQAVALMStadhsvfhrcqfdAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLqnckilprrpmpgqkntitaqgkkdpnentgiaiqnctilpfgdlsgvetylgrpwknysTTIIMQSMmgsfihpsgwlpwvgnsapntifysefenygagssmkkrvkwkglrgisykeAGKFTVRAFLQgdrwisdagvaykpgl
VDEADLHARLearrrtrrriaivslssivLVAVIVAAVVgitrnndsdrveaennghgrvISAAIKAVCDVSMYKDTCYDSLSKgasnssqmqPEELFKLAIKVASNELSKASDKFFSdhngtsddnnnNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVSDAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLgepphewlrpedRKLLQSPAENWKKnanavvgkdrfakYKTIndalravpdkskkkfiiyvkkgvyvenvriekpkwnvvmiGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTItaqgkkdpnenTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFenygagssmkkrVKWKGLRGISYKEAGKFTVRAflqgdrwisdagvaykpgl
VDEADLHarlearrrtrrriaivslssivlvavivaavvGITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSDHNGTSddnnnnnIMFLDALGNCREllsiawdsldsslssgksvsdAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDkskkkfiiyvkkgvyvENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL
****************RRRIAIVSLSSIVLVAVIVAAVVGITRNN*********NGHGRVISAAIKAVCDVSMYKDTCYD****************************************************MFLDALGNCRELLSIAWDSL********************L*SAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLL**********************WKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILP**********************TGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAY****
********************AIVSLSSIVLVAVIVAAVVG**************************AVCDVSMYKDTCYD****************LFKLAIKVASNELSKASDK*******************LDALGNCRELLSIAWDSLDS***************KTMLSSAGTYQETCIDGLEEA***************TEMTSNALAILTGI*******************WLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL
VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSL**********QPEELFKLAIKVASNELSKASDKFFSDHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLD**********DAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL
VD*ADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRN***************VISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSDHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVSDAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAY****
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSDHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVSDAVNDLKTMLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
Q9SG77561 Putative pectinesterase/p yes no 0.968 0.976 0.545 1e-174
Q9FF78564 Probable pectinesterase/p no no 0.955 0.959 0.542 1e-171
Q43111581 Pectinesterase 3 OS=Phase N/A no 0.954 0.929 0.470 1e-140
Q8GX86 669 Probable pectinesterase/p no no 0.945 0.799 0.397 1e-120
Q43867586 Pectinesterase 1 OS=Arabi no no 0.855 0.825 0.444 1e-118
Q3E8Z8 732 Putative pectinesterase/p no no 0.950 0.734 0.391 1e-118
Q9LUL8968 Putative pectinesterase/p no no 0.865 0.506 0.44 1e-117
Q43143583 Pectinesterase/pectineste N/A no 0.945 0.917 0.391 1e-110
Q9FK05587 Probable pectinesterase/p no no 0.959 0.925 0.404 1e-109
P83948584 Pectinesterase 3 OS=Citru no no 0.915 0.886 0.407 1e-109
>sp|Q9SG77|PME24_ARATH Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1 Back     alignment and function desciption
 Score =  612 bits (1579), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/572 (54%), Positives = 408/572 (71%), Gaps = 24/572 (4%)

Query: 1   VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDS-DRVEAENNGHGR 59
           VDE + H RLEARR+TR+ IAI+++S ++L  +++ AV G   +  S + VE  NNG   
Sbjct: 8   VDERE-HVRLEARRKTRKNIAIIAVSLVILAGIVIGAVFGTMAHKKSPETVETNNNGDS- 65

Query: 60  VISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSD 119
            IS ++KAVCDV+++K+ C+++L   A N+S + PEELF+ A+K+   E+SKA + F S 
Sbjct: 66  -ISVSVKAVCDVTLHKEKCFETLG-SAPNASSLNPEELFRYAVKITIAEVSKAINAFSS- 122

Query: 120 HNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGK----SVSDAVNDLKTMLSS 175
               S  +  NNI     +  C ELL +  D+L+++L+S      +V + V+DL+T LSS
Sbjct: 123 ----SLGDEKNNI----TMNACAELLDLTIDNLNNTLTSSSNGDVTVPELVDDLRTWLSS 174

Query: 176 AGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRR-LLGE 234
           AGTYQ TC++ L    P  R     +L+NSTE+TSNALAI+T + K+  S KLRR LL  
Sbjct: 175 AGTYQRTCVETLA---PDMRPFGESHLKNSTELTSNALAIITWLGKIADSFKLRRRLLTT 231

Query: 235 PPHEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVK 294
              E      R+LLQS   + +K A+ VV KD   KY+TI  AL+ VP+KS+K+ IIYVK
Sbjct: 232 ADVEVDFHAGRRLLQS--TDLRKVADIVVAKDGSGKYRTIKRALQDVPEKSEKRTIIYVK 289

Query: 295 KGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMG 354
           KGVY ENV++EK  WNV+++GDG +++IVSG  N IDGTPTF TATFAVFG+GF+ARDMG
Sbjct: 290 KGVYFENVKVEKKMWNVIVVGDGESKSIVSGRLNVIDGTPTFKTATFAVFGKGFMARDMG 349

Query: 355 FRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGN 414
           F NTAGPSKHQAVALM +AD + F+RC  +AYQDTLY H+ RQFY EC I GTVDFIFGN
Sbjct: 350 FINTAGPSKHQAVALMVSADLTAFYRCTMNAYQDTLYVHAQRQFYRECTIIGTVDFIFGN 409

Query: 415 SAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRP 474
           SA+VLQ+C+ILPRRPM GQ+NTITAQG+ DPN NTGI+I  C I P GDL+ V T+LGRP
Sbjct: 410 SASVLQSCRILPRRPMKGQQNTITAQGRTDPNMNTGISIHRCNISPLGDLTDVMTFLGRP 469

Query: 475 WKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRG 534
           WKN+STT+IM S +  FI   GWLPW G+SAP+TIFY E++N G G+S K RVKWKGLR 
Sbjct: 470 WKNFSTTVIMDSYLHGFIDRKGWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRF 529

Query: 535 ISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL 566
           +S KEA +FTV+ F+ G RW+    V ++ GL
Sbjct: 530 LSTKEANRFTVKPFIDGGRWLPATKVPFRSGL 561
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9FF78|PME46_ARATH Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 Back     alignment and function description
>sp|Q43111|PME3_PHAVU Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q43867|PME1_ARATH Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1 Back     alignment and function description
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUL8|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
255549456573 Pectinesterase-3 precursor, putative [Ri 0.978 0.966 0.654 0.0
356515345575 PREDICTED: putative pectinesterase/pecti 0.980 0.965 0.603 0.0
356556747574 PREDICTED: putative pectinesterase/pecti 0.982 0.968 0.605 0.0
356546286580 PREDICTED: putative pectinesterase/pecti 0.980 0.956 0.588 0.0
224113327569 predicted protein [Populus trichocarpa] 0.971 0.966 0.630 0.0
224100545568 predicted protein [Populus trichocarpa] 0.969 0.966 0.630 0.0
296085423561 unnamed protein product [Vitis vinifera] 0.879 0.887 0.646 0.0
225465371564 PREDICTED: probable pectinesterase/pecti 0.879 0.882 0.646 0.0
147866755559 hypothetical protein VITISV_008223 [Viti 0.950 0.962 0.619 0.0
357456165574 Pectinesterase [Medicago truncatula] gi| 0.982 0.968 0.566 0.0
>gi|255549456|ref|XP_002515781.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223545109|gb|EEF46620.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/576 (65%), Positives = 456/576 (79%), Gaps = 22/576 (3%)

Query: 1   VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNG--HG 58
           VDEA+  A LEARRRTR+RI I+SLSSI+L A++VAAVVG   +  +      NNG    
Sbjct: 10  VDEAE-QATLEARRRTRKRITIISLSSILLAAIVVAAVVGTHASGGN-----SNNGGDQA 63

Query: 59  RVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFS 118
           + IS ++KAVCDV++YKD+CY SL+  A   + +QPEELFKL+I+VA +E+SKAS  F  
Sbjct: 64  KPISTSVKAVCDVTLYKDSCYSSLAPFAK-PNNLQPEELFKLSIQVALDEISKASQYFI- 121

Query: 119 DHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVS--DAVNDLKTMLSSA 176
            +NG      N+N M   AL +C++LL +A D L+SSLSS   VS  D  +D ++ LS+A
Sbjct: 122 -NNGQFLGGLNDNNMINAALKDCQDLLDLAIDRLNSSLSSANDVSLIDVADDFRSWLSAA 180

Query: 177 GTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKLRRLLGEPP 236
           G+YQ+TCIDGL+EA     A+   YL+N+TE+TSN+LAI+T I K+ SS+K+RRL+    
Sbjct: 181 GSYQQTCIDGLKEANLKSTAQNY-YLKNTTELTSNSLAIITWIYKIASSVKMRRLMSYAE 239

Query: 237 HE------WLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFI 290
           H+      WL   DRKLLQS   + KK ANAVV KD   KYKTI+DAL+AVPDKSKK+FI
Sbjct: 240 HDKVNLPRWLHQNDRKLLQS--NDLKKKANAVVAKDGSGKYKTISDALKAVPDKSKKRFI 297

Query: 291 IYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVA 350
           IYVKKG+Y ENVR+EKPKWNVV++GDGMN TIVSG  NF+DGTPTFSTATFAVFG+GF+A
Sbjct: 298 IYVKKGIYTENVRVEKPKWNVVIVGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKGFIA 357

Query: 351 RDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDF 410
           RDMGFRNTAGP KHQAVALMSTAD SVF+RC FDA+QDTLYAHSNRQFY ECNIYGTVDF
Sbjct: 358 RDMGFRNTAGPIKHQAVALMSTADMSVFYRCSFDAFQDTLYAHSNRQFYRECNIYGTVDF 417

Query: 411 IFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETY 470
           IFGNSA V+QNC ILPRR MPGQKNTITAQG+ DPN+NTGI+IQNCTILPF +L+ ++T+
Sbjct: 418 IFGNSAVVIQNCNILPRRTMPGQKNTITAQGRFDPNQNTGISIQNCTILPFDNLTSIQTF 477

Query: 471 LGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWK 530
           LGRPWKNYSTT+ M SMMGS I PSGWLPW GN+AP TIFY+EF+N+G GSS K RVKWK
Sbjct: 478 LGRPWKNYSTTVYMHSMMGSLIDPSGWLPWTGNTAPPTIFYAEFQNFGPGSSTKNRVKWK 537

Query: 531 GLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL 566
           GL+ I+YK A KFT  AFLQGD+WI ++GV+YKPGL
Sbjct: 538 GLKNITYKLASKFTANAFLQGDKWIPESGVSYKPGL 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356515345|ref|XP_003526361.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356556747|ref|XP_003546684.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356546286|ref|XP_003541560.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 24-like [Glycine max] Back     alignment and taxonomy information
>gi|224113327|ref|XP_002316458.1| predicted protein [Populus trichocarpa] gi|222865498|gb|EEF02629.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100545|ref|XP_002311918.1| predicted protein [Populus trichocarpa] gi|222851738|gb|EEE89285.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296085423|emb|CBI29155.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465371|ref|XP_002273396.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 46-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147866755|emb|CAN80988.1| hypothetical protein VITISV_008223 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357456165|ref|XP_003598363.1| Pectinesterase [Medicago truncatula] gi|355487411|gb|AES68614.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
TAIR|locus:2175319564 AT5G04960 [Arabidopsis thalian 0.895 0.898 0.513 7.7e-135
TAIR|locus:2103227561 RHS12 "root hair specific 12" 0.885 0.893 0.516 1.4e-133
TAIR|locus:2197061586 PME1 "pectin methylesterase 1" 0.865 0.836 0.410 3.9e-99
TAIR|locus:2091070968 ATPMEPCRC [Arabidopsis thalian 0.872 0.510 0.412 5.8e-98
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.706 0.546 0.418 1.4e-95
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.909 0.769 0.383 4.8e-94
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.888 0.841 0.375 7.3e-91
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.703 0.714 0.441 2.7e-90
TAIR|locus:2155884571 AT5G49180 [Arabidopsis thalian 0.696 0.690 0.424 1.5e-89
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.696 0.725 0.441 4.6e-89
TAIR|locus:2175319 AT5G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
 Identities = 273/532 (51%), Positives = 352/532 (66%)

Query:    40 GITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFK 99
             G T  ++S +   ENNG    IS ++KA+CDV+++K+ C+++L   A N+S+  PEELFK
Sbjct:    45 GTTARDNSKKPPTENNGEP--ISVSVKALCDVTLHKEKCFETLGS-APNASRSSPEELFK 101

Query:   100 LAIKVASNELSKASDKFFSDHNGTSXXXXXXXIMFLDALGNCREXXXXXXXXXXXXXXXX 159
              A+KV   ELSK  D F    NG              A+G C E                
Sbjct:   102 YAVKVTITELSKVLDGF---SNGEHMDNATSA-----AMGACVELIGLAVDQLNETMTSS 153

Query:   160 XXXXXAVNDLKTMLSSAGTYQETCIDGLEEA-KPGFRARVLEYLRNSTEMTSNALAILTG 218
                    +DL+T LSS GTYQETC+D L EA KP        +L+NSTEMTSNALAI+T 
Sbjct:   154 LKNF---DDLRTWLSSVGTYQETCMDALVEANKPSLTTFGENHLKNSTEMTSNALAIITW 210

Query:   219 ISKVESSLKLRR--LL--GEPP---HEWLRPEDRKLLQSPAENWKKNANAVVGKDRFAKY 271
             + K+  ++K RR  LL  G       +    E R+LL+S   + KK A  VV KD   KY
Sbjct:   211 LGKIADTVKFRRRRLLETGNAKVVVADLPMMEGRRLLESG--DLKKKATIVVAKDGSGKY 268

Query:   272 KTINDALRAVPDXXXXXXXXXXXXXXXXENVRIEKPKWNVVMIGDGMNETIVSGHRNFID 331
             +TI +AL  V +                ENVR+EK KWNVVM+GDG ++TIVS   NFID
Sbjct:   269 RTIGEALAEVEEKNEKPTIIYVKKGVYLENVRVEKTKWNVVMVGDGQSKTIVSAGLNFID 328

Query:   332 GTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLY 391
             GTPTF TATFAVFG+GF+ARDMGF NTAGP+KHQAVALM +AD SVF++C  DA+QDT+Y
Sbjct:   329 GTPTFETATFAVFGKGFMARDMGFINTAGPAKHQAVALMVSADLSVFYKCTMDAFQDTMY 388

Query:   392 AHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGI 451
             AH+ RQFY +C I GTVDFIFGN+A V Q C+ILPRRPM GQ+NTITAQG+KDPN+NTGI
Sbjct:   389 AHAQRQFYRDCVILGTVDFIFGNAAVVFQKCEILPRRPMKGQQNTITAQGRKDPNQNTGI 448

Query:   452 AIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFY 511
             +I NCTI P  +L+ ++T+LGRPWK++STT+IM+S M  FI+P GWLPW G++AP+TIFY
Sbjct:   449 SIHNCTIKPLDNLTDIQTFLGRPWKDFSTTVIMKSFMDKFINPKGWLPWTGDTAPDTIFY 508

Query:   512 SEFENYGAGSSMKKRVKWKGLR-GISYKEAGKFTVRAFLQGDRWISDAGVAY 562
             +E+ N G G+S K RVKW+GL+  ++ KEA KFTV+ F+ G+ W+    V +
Sbjct:   509 AEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFTVKPFIDGNNWLPATKVPF 560
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0010054 "trichoblast differentiation" evidence=RCA
TAIR|locus:2103227 RHS12 "root hair specific 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197061 PME1 "pectin methylesterase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091070 ATPMEPCRC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SG77PME24_ARATH3, ., 1, ., 1, ., 1, 10.54540.96810.9768yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00102398
pectinesterase family protein (EC-3.1.1.11) (570 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_IX000478
hypothetical protein (217 aa)
  •     0.485
eugene3.41450001
hypothetical protein (176 aa)
  •     0.461

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 0.0
PLN02314586 PLN02314, PLN02314, pectinesterase 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 0.0
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-161
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-159
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-156
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-153
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-149
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-144
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-141
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-137
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-136
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-132
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-130
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-130
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-129
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-125
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-109
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-108
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-106
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-93
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-53
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-52
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-52
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-51
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-49
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 6e-49
PLN02671359 PLN02671, PLN02671, pectinesterase 4e-45
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-44
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-42
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 3e-40
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 8e-33
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-27
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 8e-27
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 4e-15
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-11
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  879 bits (2272), Expect = 0.0
 Identities = 366/572 (63%), Positives = 448/572 (78%), Gaps = 19/572 (3%)

Query: 1   VDEADLHARLEARRRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNGHGRV 60
           VDEA+  ARLEARR+TR+RI I+SLSSI+LVA++VAAVVG T  +  +  +  NNG  + 
Sbjct: 7   VDEAE-QARLEARRKTRKRITIISLSSIILVAIVVAAVVG-TTASSGNSEKTGNNG--KS 62

Query: 61  ISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQPEELFKLAIKVASNELSKASDKFFSDH 120
           IS ++KAVCDV++YKD+CY++L+  A  +SQ+QPEELFK A+KVA NELSKAS  F +  
Sbjct: 63  ISTSVKAVCDVTLYKDSCYETLAP-APKASQLQPEELFKYAVKVAINELSKASQAFSNSE 121

Query: 121 NGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGKSVS--DAVNDLKTMLSSAGT 178
                 +N  N     AL  C+ELL +A D+L++SL+S   VS  D V+DL+T LSSAGT
Sbjct: 122 GFLGVKDNMTNA----ALNACQELLDLAIDNLNNSLTSSGGVSVLDNVDDLRTWLSSAGT 177

Query: 179 YQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLKL-RRLLGEPPH 237
           YQETCIDGL E  P  ++    +L+NSTE+TSN+LAI+T I K+  S+KL RRLL     
Sbjct: 178 YQETCIDGLAE--PNLKSFGENHLKNSTELTSNSLAIITWIGKIADSVKLRRRLLTYADD 235

Query: 238 E---WLRPEDRKLLQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVK 294
               WL  E RKLLQS   + KK A+ VV KD   KYKTI++AL+ VP+KS+K+ IIYVK
Sbjct: 236 AVPKWLHHEGRKLLQS--SDLKKKADIVVAKDGSGKYKTISEALKDVPEKSEKRTIIYVK 293

Query: 295 KGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMG 354
           KGVY ENVR+EK KWNVVM+GDGM++TIVSG  NF+DGTPTFSTATFAVFG+GF+ARDMG
Sbjct: 294 KGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFMARDMG 353

Query: 355 FRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGN 414
           FRNTAGP KHQAVALMS+AD SVF+RC  DA+QDTLYAH+ RQFY ECNIYGTVDFIFGN
Sbjct: 354 FRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGN 413

Query: 415 SAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRP 474
           SA V QNC ILPRRPM GQ+NTITAQG+ DPN+NTGI+IQNCTILP GDL+ V+T+LGRP
Sbjct: 414 SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRP 473

Query: 475 WKNYSTTIIMQSMMGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRG 534
           WKNYSTT+IM SMMGS I P GWLPW G++AP TIFY+EF+N+G G+S K RVKWKGL+ 
Sbjct: 474 WKNYSTTVIMHSMMGSLIDPKGWLPWTGDTAPPTIFYAEFQNFGPGASTKNRVKWKGLKT 533

Query: 535 ISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL 566
           I+ KEA KFTV+ F+ G +W+   GV++KPGL
Sbjct: 534 ITNKEASKFTVKPFIDGGKWLPATGVSFKPGL 565

Length = 565
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.37
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.53
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.49
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.34
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.11
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.56
PLN02793443 Probable polygalacturonase 96.96
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.61
PLN02218431 polygalacturonase ADPG 96.49
KOG1777 625 consensus Putative Zn-finger protein [General func 96.48
PRK10531422 acyl-CoA thioesterase; Provisional 96.42
PLN03010409 polygalacturonase 96.32
PLN03003456 Probable polygalacturonase At3g15720 96.11
PLN02155394 polygalacturonase 96.02
PLN02671359 pectinesterase 96.0
PLN02480343 Probable pectinesterase 95.95
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.84
PLN02682369 pectinesterase family protein 95.77
PLN02634359 probable pectinesterase 95.68
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.66
PLN02497331 probable pectinesterase 95.27
PLN02773317 pectinesterase 95.2
PLN02665366 pectinesterase family protein 95.01
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.81
PLN02432293 putative pectinesterase 94.74
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.65
PLN02916502 pectinesterase family protein 94.48
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.39
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.36
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.32
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.17
PLN02304379 probable pectinesterase 94.1
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.01
PLN02176340 putative pectinesterase 94.01
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.86
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.81
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.77
PLN02197588 pectinesterase 93.71
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.66
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.55
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.51
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.32
PLN02301548 pectinesterase/pectinesterase inhibitor 93.17
smart00656190 Amb_all Amb_all domain. 93.04
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.03
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.87
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 92.41
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.25
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.9
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 91.73
PLN02314586 pectinesterase 91.32
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.53
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 89.43
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 88.25
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 87.43
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 86.77
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 86.07
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 85.22
PLN02188404 polygalacturonase/glycoside hydrolase family prote 82.4
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=4.2e-150  Score=1232.99  Aligned_cols=541  Identities=65%  Similarity=1.055  Sum_probs=494.6

Q ss_pred             hcccCcEehhHHHHHHHHHHhheeeEeEeccCCCCcccccCCCCCcchhHHHHhcccCCCChhcHHHhhccCCCCCCCCC
Q 036226           14 RRTRRRIAIVSLSSIVLVAVIVAAVVGITRNNDSDRVEAENNGHGRVISAAIKAVCDVSMYKDTCYDSLSKGASNSSQMQ   93 (566)
Q Consensus        14 ~~~~kki~i~~~s~iLlv~~vi~~v~~v~~~~~~~~~~~~~~~~~~~~~~~I~~~C~~T~yp~lC~~sLs~~~~s~~~~d   93 (566)
                      ++++||++|+++|++|||++|+++++++..+.+...  +.+. .....+..|+++|++|+||++|+++|++.|.+.. .+
T Consensus        19 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~-~~   94 (565)
T PLN02468         19 RKTRKRITIISLSSIILVAIVVAAVVGTTASSGNSE--KTGN-NGKSISTSVKAVCDVTLYKDSCYETLAPAPKASQ-LQ   94 (565)
T ss_pred             hhccceehHHHHHHHHHHHHHHhheEEEeccccCCC--CCCc-cccchhHHHHHhccCCCChHHHHHHHhhcCCccc-CC
Confidence            455789999999999999999999988865322210  1111 1222456999999999999999999999887655 79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhHHH
Q 036226           94 PEELFKLAIKVASNELSKASDKFFSDHNGTSDDNNNNNIMFLDALGNCRELLSIAWDSLDSSLSSGK--SVSDAVNDLKT  171 (566)
Q Consensus        94 p~~L~~~al~~t~~~~~~a~~~~~~l~~~~~~~~~~~d~~~k~AL~dC~el~~~Aid~L~~S~~~l~--~~~~~~~Dlkt  171 (566)
                      |++|++++|+++++++.++...+.+++....    .++++++.||+||+|||++|+|+|++++++|.  ......+|++|
T Consensus        95 p~~L~~~al~vti~~~~~a~~~~s~l~~~~~----~~d~~~k~AL~DC~ELlddaid~L~~Sl~~l~~~~~~~~~dDl~T  170 (565)
T PLN02468         95 PEELFKYAVKVAINELSKASQAFSNSEGFLG----VKDNMTNAALNACQELLDLAIDNLNNSLTSSGGVSVLDNVDDLRT  170 (565)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            9999999999999999999988877754321    36889999999999999999999999999982  12556899999


Q ss_pred             HHHHhhhhHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhh-hcccCCC---CCCCCCCcccccc
Q 036226          172 MLSSAGTYQETCIDGLEEAKPGFRARVLEYLRNSTEMTSNALAILTGISKVESSLK-LRRLLGE---PPHEWLRPEDRKL  247 (566)
Q Consensus       172 wLSAAlT~q~TClDGF~~~~~~~~~~l~~~~~~~~~L~SNaLAIv~~ls~~~~~~~-~~~~l~~---~~p~w~~~~~r~l  247 (566)
                      |||||||||+||+|||++  .++++.|...+.++.||+||||||++.++..+..++ .||+|.+   |||+|++++||||
T Consensus       171 WLSAAlTnq~TClDGF~e--~~vk~~~~~~l~n~~eLtSNaLAIi~~l~~~~~~~~~~r~~~~~~~~~~p~w~~~~~r~l  248 (565)
T PLN02468        171 WLSSAGTYQETCIDGLAE--PNLKSFGENHLKNSTELTSNSLAIITWIGKIADSVKLRRRLLTYADDAVPKWLHHEGRKL  248 (565)
T ss_pred             HHHHHhcchhhhhhhhcc--cCchHHHHHHHHHHHHHHHHHHHHhhccccccccccccCccccccCCCCcccccccchhh
Confidence            999999999999999975  458999999999999999999999999888666554 4566652   8999999999999


Q ss_pred             ccCCcccCCCCceEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceEEeeEEEeccCCCeEEEecCCCceEEEccc
Q 036226          248 LQSPAENWKKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHR  327 (566)
Q Consensus       248 l~~~~~~~~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~t~I~~~~  327 (566)
                      ||.+..  .++++++|++||+|+|+|||+||+++|+++++|++||||||+|+|+|+|+++|+||+|+|+|+++|+|+|+.
T Consensus       249 l~~~~~--~~~~~~~Va~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~  326 (565)
T PLN02468        249 LQSSDL--KKKADIVVAKDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSL  326 (565)
T ss_pred             hcCCcc--cCCCcEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceEEEEEecCCCCeEEEEecCCCCCEEEeCC
Confidence            988653  478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCccceEEEEecCcEEEEeeEEeeCCCCCCCceEEEEecCCceEEEEeEEeeccccccccccceEeeecEEecc
Q 036226          328 NFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGT  407 (566)
Q Consensus       328 ~~~~g~~t~~sat~~v~~~~f~~~~it~~N~~g~~~~qAvAl~v~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~c~I~G~  407 (566)
                      +..||.+|+++|||.|.|++|+++||+|+|++|+.+||||||++.+|+++||||+|+|||||||+|.+||||++|+|+|+
T Consensus       327 ~~~dg~~t~~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~Gt  406 (565)
T PLN02468        327 NFVDGTPTFSTATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGT  406 (565)
T ss_pred             ccCCCCCccceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecCCceeeeeeEEEecCCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCCCCceeEeeccCcCCCeEEEEeCC
Q 036226          408 VDFIFGNSAAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGVETYLGRPWKNYSTTIIMQSM  487 (566)
Q Consensus       408 vDfIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRpW~~~s~~v~~~s~  487 (566)
                      ||||||+|++|||+|+|++|+|+++|.++||||||+++++++||||+||+|++++++...++||||||++|+|||||+|+
T Consensus       407 vDFIFG~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~  486 (565)
T PLN02468        407 VDFIFGNSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSM  486 (565)
T ss_pred             cceeeccceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEEEecc
Confidence            99999999999999999999998899999999999999999999999999999988876789999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCceEEEEeecccCCCCCCcccccCCCCCCCHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 036226          488 MGSFIHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL  566 (566)
Q Consensus       488 i~~~I~p~Gw~~w~~~~~~~t~~f~Ey~n~Gpga~~~~Rv~w~~~~~l~~~~a~~~t~~~~~~g~~W~~~~~~p~~~g~  566 (566)
                      |+++|+|+||.+|++++.++|+||+||+|+||||++++||+|+|+++|+.+||.+||+++||+|++|+|.+||||.+||
T Consensus       487 ~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~g~~~l~~~ea~~ft~~~fi~g~~Wl~~~~vp~~~gl  565 (565)
T PLN02468        487 MGSLIDPKGWLPWTGDTAPPTIFYAEFQNFGPGASTKNRVKWKGLKTITNKEASKFTVKPFIDGGKWLPATGVSFKPGL  565 (565)
T ss_pred             cCCeEccccCCCCCCCCCcCceEEEEeecccCCCCcCCCccccccccCCHHHHhhhhHHhhcCCCCcCCCCCCCcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999997

>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-82
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-82
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-16
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-09
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  304 bits (778), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 198/312 (63%), Gaps = 5/312 (1%)
Query: 260 NAVVGKDRFAKYKTINDALRAVPDXXXXXXXXXXXXXXXXENVRIEKPKWNVVMIGDGMN 319
           N VV  D    YKT+++A+ A P+                ENV + K K N++ +GDG  
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 320 ETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFH 379
            TI++  +N  DG+ TF++AT A  G GF+ARD+ F+NTAG +KHQAVAL   +D S F+
Sbjct: 68  STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 380 RCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITA 439
           RC   AYQD+LY HSNRQF+  C I GTVDFIFGN+A VLQ+C I  RRP  GQKN +TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 440 QGKKDPNENTGIAIQNCTILPFGDLSGVE----TYLGRPWKNYSTTIIMQSMMGSFIHPS 495
           QG+ DPN+NTGI IQ   I    DL  V+    TYLGRPWK YS T++MQS + + I+P+
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 496 GWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGI-SYKEAGKFTVRAFLQGDRW 554
           GW PW GN A +T++Y E++N GAG++   RV WKG + I S  EA  FT  +F+ G  W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 555 ISDAGVAYKPGL 566
           +      +  GL
Sbjct: 308 LKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-158
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-158
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-121
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-120
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-99
1x91_A153 Invertase/pectin methylesterase inhibitor family p 2e-27
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 1e-24
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  454 bits (1170), Expect = e-158
 Identities = 158/313 (50%), Positives = 210/313 (67%), Gaps = 5/313 (1%)

Query: 259 ANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGM 318
           ANAVV +D    Y+T+ +A+ A PDKSK +++IYVK+G Y ENV +   K N++++GDGM
Sbjct: 3   ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62

Query: 319 NETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVF 378
             T ++G  N +DG+ TF +AT A  GQGF+ +D+  +NTAGP+K QAVAL   AD SV 
Sbjct: 63  YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122

Query: 379 HRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTIT 438
           +RC+ DAYQDTLYAHS RQFY +  + GTVDFIFGN+A V Q C+++ R+P   Q+N +T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182

Query: 439 AQGKKDPNENTGIAIQNCTILPFGDLSGVE----TYLGRPWKNYSTTIIMQSMMGSFIHP 494
           AQG+ DPN+ TG +IQ C I+   DL  V     TYLGRPWK YS T++M+S +G  I+P
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242

Query: 495 SGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGI-SYKEAGKFTVRAFLQGDR 553
           +GW  W G+ A  T++Y EF N G G+   KRVKW G   I    +A  FTV   +QG  
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302

Query: 554 WISDAGVAYKPGL 566
           W+   GVAY  GL
Sbjct: 303 WLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.61
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.64
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.1
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.71
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.61
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.42
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.4
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.15
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.14
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.09
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.07
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.06
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.05
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.96
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.92
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.72
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.67
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.66
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.61
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.45
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.31
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.27
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.22
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.01
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 95.96
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.62
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.53
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.35
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.24
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.12
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.8
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.76
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.54
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 92.92
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 91.11
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 86.74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 84.85
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.42
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 83.86
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 83.47
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.9e-95  Score=752.94  Aligned_cols=310  Identities=51%  Similarity=0.902  Sum_probs=298.9

Q ss_pred             CCceEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceEEeeEEEeccCCCeEEEecCCCceEEEccccccCCCCCc
Q 036226          257 KNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPTF  336 (566)
Q Consensus       257 ~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~t~I~~~~~~~~g~~t~  336 (566)
                      ++++++|++||+|+|+|||+||+++|++++.|++|+|+||+|+|+|+|++.|+||||+|+|+++|+|+++.+..+|.+|+
T Consensus         1 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   80 (317)
T 1xg2_A            1 IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTF   80 (317)
T ss_dssp             CCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSG
T ss_pred             CCceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             cceEEEEecCcEEEEeeEEeeCCCCCCCceEEEEecCCceEEEEeEEeeccccccccccceEeeecEEecccceeecCCc
Q 036226          337 STATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSA  416 (566)
Q Consensus       337 ~sat~~v~~~~f~~~~it~~N~~g~~~~qAvAl~v~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~~  416 (566)
                      .++||.|.+++|+++||||+|++|+.++|||||++.+|+++|+||+|.|||||||++.+||||++|+|+|+||||||+++
T Consensus        81 ~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~  160 (317)
T 1xg2_A           81 RSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAA  160 (317)
T ss_dssp             GGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCE
T ss_pred             ceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCce
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeEEEecCCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCCCCc----eeEeeccCcCCCeEEEEeCCCCCcc
Q 036226          417 AVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGV----ETYLGRPWKNYSTTIIMQSMMGSFI  492 (566)
Q Consensus       417 a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~----~~yLGRpW~~~s~~v~~~s~i~~~I  492 (566)
                      ++||+|+|+++++.+++.++||||+|+++++++||||+||+|++++++.+.    ++||||||++|+|+|||+|+|+++|
T Consensus       161 avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I  240 (317)
T 1xg2_A          161 VVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI  240 (317)
T ss_dssp             EEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTB
T ss_pred             EEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcc
Confidence            999999999999888889999999999999999999999999999876432    7999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceEEEEeecccCCCCCCcccccCCCCCC-CHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 036226          493 HPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGI-SYKEAGKFTVRAFLQGDRWISDAGVAYKPGL  566 (566)
Q Consensus       493 ~p~Gw~~w~~~~~~~t~~f~Ey~n~Gpga~~~~Rv~w~~~~~l-~~~~a~~~t~~~~~~g~~W~~~~~~p~~~g~  566 (566)
                      +|+||.+|+++++++|++|+||+|+|||+++++||+|+++++| +++||.+||+.+||+|++|+|.++|||.+||
T Consensus       241 ~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          241 NPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             CTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999999999999999999999999999999999998888 6799999999999999889999999999996
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-133
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 5e-89
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 6e-25
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 2e-18
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 6e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  388 bits (999), Expect = e-133
 Identities = 158/313 (50%), Positives = 208/313 (66%), Gaps = 5/313 (1%)

Query: 259 ANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGM 318
            N VV  D    YKT+++A+ A P+ SK +++I +K GVY ENV + K K N++ +GDG 
Sbjct: 7   PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66

Query: 319 NETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVF 378
             TI++  +N  DG+ TF++AT A  G GF+ARD+ F+NTAG +KHQAVAL   +D S F
Sbjct: 67  TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126

Query: 379 HRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTIT 438
           +RC   AYQD+LY HSNRQF+  C I GTVDFIFGN+A VLQ+C I  RRP  GQKN +T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186

Query: 439 AQGKKDPNENTGIAIQNCTILPFGDL----SGVETYLGRPWKNYSTTIIMQSMMGSFIHP 494
           AQG+ DPN+NTGI IQ   I    DL    S   TYLGRPWK YS T++MQS + + I+P
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246

Query: 495 SGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGI-SYKEAGKFTVRAFLQGDR 553
           +GW PW GN A +T++Y E++N GAG++   RV WKG + I S  EA  FT  +F+ G  
Sbjct: 247 AGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGS 306

Query: 554 WISDAGVAYKPGL 566
           W+      +  GL
Sbjct: 307 WLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.01
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.66
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.9
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.87
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.16
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.95
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.78
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.59
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.05
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.97
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.9
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.7
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.67
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.79
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.51
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 85.96
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 85.05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.1e-98  Score=770.21  Aligned_cols=311  Identities=50%  Similarity=0.879  Sum_probs=300.4

Q ss_pred             CCCceEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceEEeeEEEeccCCCeEEEecCCCceEEEccccccCCCCC
Q 036226          256 KKNANAVVGKDRFAKYKTINDALRAVPDKSKKKFIIYVKKGVYVENVRIEKPKWNVVMIGDGMNETIVSGHRNFIDGTPT  335 (566)
Q Consensus       256 ~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~t~I~~~~~~~~g~~t  335 (566)
                      .++|+++|++||+|+|+|||+||+++|.+++.|++|+|+||+|+|+|+|++.|+||||+|+|++.|+|+++.+..+|.+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ccceEEEEecCcEEEEeeEEeeCCCCCCCceEEEEecCCceEEEEeEEeeccccccccccceEeeecEEecccceeecCC
Q 036226          336 FSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNS  415 (566)
Q Consensus       336 ~~sat~~v~~~~f~~~~it~~N~~g~~~~qAvAl~v~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~  415 (566)
                      +.++||.|.+++|+++||+|+|++|+.++|||||++.+|+++||+|+|+|||||||++.+||||++|+|+|+||||||++
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeEEEecCCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCCCCc----eeEeeccCcCCCeEEEEeCCCCCc
Q 036226          416 AAVLQNCKILPRRPMPGQKNTITAQGKKDPNENTGIAIQNCTILPFGDLSGV----ETYLGRPWKNYSTTIIMQSMMGSF  491 (566)
Q Consensus       416 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~----~~yLGRpW~~~s~~v~~~s~i~~~  491 (566)
                      +++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.+.    ++||||||++|+|+||++|+|+++
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            9999999999999888889999999999999999999999999999886433    689999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceEEEEeecccCCCCCCcccccCCCCC-CCHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 036226          492 IHPSGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRG-ISYKEAGKFTVRAFLQGDRWISDAGVAYKPGL  566 (566)
Q Consensus       492 I~p~Gw~~w~~~~~~~t~~f~Ey~n~Gpga~~~~Rv~w~~~~~-l~~~~a~~~t~~~~~~g~~W~~~~~~p~~~g~  566 (566)
                      |+|+||.+|++.+.+++++|+||+|+|||+++++||+|+++++ |+++||.+||.++||+|++|+|.++|||.+||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999999999999999999999999999999998765 59999999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure