Citrus Sinensis ID: 036416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MELSRVSPLLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccccccccHHHHcccccccEEEEccccccccHHHcccccccccccccEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccEEEEEccccccccccccccccEEEEEEEEcccccccccccEEEEccccccccccEEEcccccEEcccccccHHHHHHHHcHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccEEEEEcccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHcHHHHHHHHccccccEEEEEcccccccEEHccccccccccccccccccccHHHHHEEEEEcccccHHHcEEEEcccccccccEEEEEEEEEEcccHHHHHHHcccccccccEEccccEEEEEEEEcccccccccccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
melsrvspLLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSKALATKAAAETRTRTNMVKAIRVyehgdpevlkwedveigepgegeiRVRNKAIGLNFIDVYyrkgvykpakmpftpgmeAVGEVVavgpgltgrtvGDIIAYAggamgsyaeeqilpankvvpvpssidpVIAASIMLKGMTAQFLLRRcfkvepghTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEkaaqakddgchh
Flexible Loop (DISEMBL)
melsrvspllSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSKALAtkaaaetrtrtnmVKAIRvyehgdpevlkwedveigepgegeirvrnkaiglNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEkaaqakddgchh
Low Complexity Region (SEG)
MElsrvspllsrlvAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSkalatkaaaetrtrtNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTpgmeavgevvavgpgLTGRTVGDIIAYAGGAMGSYAEEQILPANKvvpvpssidpviAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH
Disordered region (IsUnstruct)
********LLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSKALAT*****TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV****************
Disordered Region (DISOPRED)
*********LSRLVAAPGLLLRRRFTQNSTLF***************************************AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC**
Disordered Region (DISEMBL)
********LLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKH**************RTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS***************
Disordered Region (DISPRO)
****RVSPLLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVI*L******************TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELSRVSPLLSRLVAAPGLLLRRRFTQNSTLFLLHNSNNKSKVILLLKHKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
P43903	325	Quinone oxidoreductase OS	yes	no	0.726	0.572	0.505	2e-46
P40783	327	Quinone oxidoreductase OS	yes	no	0.726	0.568	0.451	2e-38
P28304	327	Quinone oxidoreductase 1	N/A	no	0.726	0.568	0.440	5e-38
O97764	330	Zeta-crystallin OS=Bos ta	yes	no	0.742	0.575	0.355	1e-23
Q8BGC4	377	Zinc-binding alcohol dehy	yes	no	0.761	0.517	0.371	2e-23
Q8N4Q0	377	Zinc-binding alcohol dehy	yes	no	0.636	0.432	0.402	6e-23
Q6AYT0	329	Quinone oxidoreductase OS	yes	no	0.742	0.577	0.340	1e-22
O74489	329	Probable quinone oxidored	yes	no	0.699	0.544	0.384	2e-22
Q24K16	377	Zinc-binding alcohol dehy	no	no	0.636	0.432	0.396	8e-22
P38230	334	Probable quinone oxidored	yes	no	0.714	0.547	0.363	9e-22

>sp|P43903|QOR_PSEAE Quinone oxidoreductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=qor PE=3 SV=2

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 123/186 (66%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M K I+   +G PEVL++ D +  EPG  E+RVRN+AIGLNFID YYR G+Y    +P  
Sbjct: 1   MAKRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAPGLPSG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G E  GEV AVG  +T   VGD +AYA G +G+Y+E  +L   K+V +P  ID   AA+
Sbjct: 61  LGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +MLKG+T Q+LLR+ +++  G T+L  AAAGGVG   CQWA ALG  +IGTVS+ EKA  
Sbjct: 121 VMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARL 180

Query: 249 AKDDGC 254
           A+  G 
Sbjct: 181 ARQHGA 186

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 5

>sp|P40783|QOR_SALTY Quinone oxidoreductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=qor PE=3 SV=2

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 113/186 (60%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M   I  ++HG PEVL+  +    EP E EI+V NKAIG+NFID Y R G+Y P  +P  
Sbjct: 1   MATRIEFHKHGGPEVLQTVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPPPSLPAG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G EA G V  VG G+    VGD + YA   +G+Y+    + A+K   +P +I    AA+
Sbjct: 61  LGTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             LKG+T  +LLR+ ++V+P    L  AAAGGVG + CQWA ALGA +IGTV + +KA +
Sbjct: 121 SFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQR 180

Query: 249 AKDDGC 254
           A D G 
Sbjct: 181 ALDAGA 186

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P28304|QOR1_ECOLI Quinone oxidoreductase 1 OS=Escherichia coli (strain K12) GN=qorA PE=1 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 112/186 (60%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M   I  ++HG PEVL+  +    +P E EI+V NKAIG+NFID Y R G+Y P  +P  
Sbjct: 1   MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G EA G V  VG G+     GD + YA  A+G+Y+    + A+K   +P++I    AA+
Sbjct: 61  LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV T +KA  
Sbjct: 121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 180

Query: 249 AKDDGC 254
           A   G 
Sbjct: 181 ALKAGA 186

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)

Query: 65  TRTNMVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--K 121
           T   +++AIRV+E G PEVLK + DV +  P + ++ ++ +A G+N +D Y R G +  K
Sbjct: 3   TGQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIK 62

Query: 122 PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSI 181
           P  +P+TPG +  G + AVG  ++    GD +       G YAE  +   + V  +P  +
Sbjct: 63  PL-LPYTPGFDVAGIIEAVGESVSAFKKGDRVFTTRTISGGYAEYALAADHTVYTLPEKL 121

Query: 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241
           D    A+I +   TA   L     V+PG +VL+  A+GGVG   CQ A A G  V+GT S
Sbjct: 122 DFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGGVGIAACQIARAYGLKVLGTAS 181

Query: 242 TKEKAAQAKDDGCH 255
           T+E      ++G H
Sbjct: 182 TEEGQKIVLENGAH 195

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q8BGC4|ZADH2_MOUSE Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 55  LATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY 114
           L  + +A  RT   +V   R+  +    V    D  +  PG+G++ VRN+ +G+N  D+ 
Sbjct: 22  LDFQGSAIPRTMQKLV-VTRLSPNFHEAVTLRRDCPVPLPGDGDLLVRNRFVGINASDIN 80

Query: 115 YRKGVYKPA-KMPFTPGMEAVGEVVAVGPGLTGR-TVGDIIAYAGGAMGSYAEEQILPAN 172
           Y  G Y P+ K PF  G E +GEVVA+G   + R TVG  +AY   A GS+AE  ++PA+
Sbjct: 81  YSAGRYDPSLKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYM--APGSFAEYTVVPAS 138

Query: 173 KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL 232
             +P+PS + P    ++++ G TA   L    ++  G  VL+ AAAGG G    Q +   
Sbjct: 139 IAIPMPS-VKPEYL-TMLVSGTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIA 196

Query: 233 GATVIGTVSTKEKAAQAKDDGC 254
              VIGT S+ EKAA  K  GC
Sbjct: 197 KCHVIGTCSSDEKAAFLKSIGC 218

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8N4Q0|ZADH2_HUMAN Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 6/169 (3%)

Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTPGMEAVGEVVAVGPGLTG 146
           D  +  PG+G++ VRN+ +G+N  D+ Y  G Y P+ K PF  G E +GEVVA+G   + 
Sbjct: 54  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 113

Query: 147 R-TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK 205
           R TVG  +AY   A GS+AE  ++PA+   PVPS + P    ++++ G TA   L+    
Sbjct: 114 RYTVGQAVAYM--APGSFAEYTVVPASIATPVPS-VKPEYL-TLLVSGTTAYISLKELGG 169

Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254
           +  G  VL+ AAAGG G    Q +      VIGT S+ EK+A  K  GC
Sbjct: 170 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC 218

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6AYT0|QOR_RAT Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 65  TRTNMVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--K 121
           T   +++AIRV+E G PEVLK + DV +  P   ++ ++  A G+N ++ Y R G Y  K
Sbjct: 3   TGQKLMRAIRVFEFGGPEVLKLQSDVVVPAPQSHQVLIKVHACGVNPVETYIRSGTYSRK 62

Query: 122 PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSI 181
           PA +P+TPG +  G + +VG G++    GD +       G YAE  +   N   P+P ++
Sbjct: 63  PA-LPYTPGSDVAGIIESVGDGVSAFKKGDRVFCFSTVSGGYAEFALSADNTTYPLPETL 121

Query: 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241
           D    A++ +   TA   L    +   G +VL+  A+GGVG   CQ A A G  V+GT  
Sbjct: 122 DFRQGAALGIPYFTACRALFHSARARAGESVLVHGASGGVGLATCQIARAHGLKVLGTAG 181

Query: 242 TKEKAAQAKDDGCH 255
           ++E       +G H
Sbjct: 182 SEEGKKLVLQNGAH 195

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|O74489|QOR_SCHPO Probable quinone oxidoreductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zta1 PE=1 SV=2

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 3/182 (1%)

Query: 73  IRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGME 132
           ++V + G   VL+    EI +P    + ++N   GLN+ID Y R G+Y  A +P+ PG E
Sbjct: 6   VQVSKTGPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYT-APLPYIPGKE 64

Query: 133 AVGEVVAVGPGLTGR-TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIML 191
           A G V AVG  +     VGD + Y     G+YA+   +P   V  V   I   IA++ +L
Sbjct: 65  AAGVVAAVGDKVEADFKVGDRVVYLT-PFGAYAQYTNVPTTLVSKVSEKIPLKIASAALL 123

Query: 192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251
           +G+TA  L+   + V+ G TV++ AAAGGVG LLCQ   A    VI T ST  K   A  
Sbjct: 124 QGLTAYTLIEEAYPVKTGDTVVVHAAAGGVGLLLCQMLRARNVHVIATASTAAKRRIAIK 183

Query: 252 DG 253
           +G
Sbjct: 184 NG 185

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q24K16|ZADH2_BOVIN Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Bos taurus GN=ZADH2 PE=2 SV=1

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 93/169 (55%), Gaps = 6/169 (3%)

Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTPGMEAVGEVVAVGPGLTG 146
           D  +  PG+G++ VRN+ +G+N  D+ Y  G Y P+ K PF  G E VGEVVA+G   + 
Sbjct: 54  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKTPFDAGFEGVGEVVALGLSASA 113

Query: 147 R-TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK 205
              VG  +AY   A GS+AE  ++PA   +PVP  + P    ++++ G TA   L+    
Sbjct: 114 AFMVGQAVAYM--APGSFAEYTVVPARVAIPVPG-LKPEYL-TLLVSGTTAYISLKELGG 169

Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254
           +  G  VL+ AAAGG G    Q A      VIGT S+ EK+A  K  GC
Sbjct: 170 LSEGKKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSAEKSAFLKSVGC 218

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P38230|QOR_YEAST Probable quinone oxidoreductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZTA1 PE=1 SV=1

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 7/190 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           K I + E G  +V+K+ED  +    E E+ ++NK  G+N+I+ Y+RKG+Y P + P+  G
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY-PCEKPYVLG 68

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAY-AGGAMGSYAEEQILPANKVVPVP---SSIDPVIA 186
            EA G VVA G G+T   VGD +AY +      Y+  +I     V+ +P   S  +  + 
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYS--KISSQGPVMKLPKGTSDEELKLY 126

Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246
           A+ +L+ +TA       + V+ G  VL+ AAAGGVG +L Q     GA  I   ST EK 
Sbjct: 127 AAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL 186

Query: 247 AQAKDDGCHH 256
             AK+ G  +
Sbjct: 187 KIAKEYGAEY 196

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
42568692	406	NADPH2:quinone reductase [Arabidopsis th	0.792	0.5	0.833	4e-98
9758467	324	quinone oxidoreductase [Arabidopsis thal	0.734	0.580	0.877	7e-96
297797111	403	hypothetical protein ARALYDRAFT_496310 [	0.796	0.506	0.814	6e-95
224129570	324	predicted protein [Populus trichocarpa]	0.734	0.580	0.840	1e-91
224138152	324	predicted protein [Populus trichocarpa]	0.734	0.580	0.861	1e-91
211905343	324	Ted2 [Gossypium hirsutum]	0.734	0.580	0.845	2e-91
1617036	324	Ted2 [Vigna unguiculata]	0.734	0.580	0.845	9e-91
356544208	376	PREDICTED: quinone oxidoreductase 1-like	0.742	0.505	0.826	2e-90
255539845	323	quinone oxidoreductase, putative [Ricinu	0.730	0.578	0.840	1e-87
359482805	395	PREDICTED: quinone oxidoreductase 1 [Vit	0.773	0.501	0.754	4e-86

>gi|42568692|ref|NP_200959.2| NADPH2:quinone reductase [Arabidopsis thaliana] gi|119935943|gb|ABM06041.1| At5g61510 [Arabidopsis thaliana] gi|332010094|gb|AED97477.1| NADPH2:quinone reductase [Arabidopsis thaliana]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 170/204 (83%), Positives = 187/204 (91%), Gaps = 1/204 (0%)

Query: 53  KALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID 112
           +AL+T A  E+  +  MVK IRVYEHG PEVLKWEDVE+GEP EGEIRV+NKAIGLNFID
Sbjct: 68  RALSTVAVEESSEK-KMVKGIRVYEHGGPEVLKWEDVEVGEPKEGEIRVKNKAIGLNFID 126

Query: 113 VYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPAN 172
           VY+RKGVYKPA MPFTPGMEAVGEVVAVG GLTGR +GD++AYAG  MG+YAEEQILPA+
Sbjct: 127 VYFRKGVYKPASMPFTPGMEAVGEVVAVGSGLTGRMIGDLVAYAGNPMGAYAEEQILPAD 186

Query: 173 KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL 232
           KVVPVPSSIDP++AASIMLKGMTAQFLLRRCFKVEPGHT+L+ AAAGGVGSLLCQWANAL
Sbjct: 187 KVVPVPSSIDPIVAASIMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANAL 246

Query: 233 GATVIGTVSTKEKAAQAKDDGCHH 256
           GATVIGTVST EKAAQAK+DGCHH
Sbjct: 247 GATVIGTVSTNEKAAQAKEDGCHH 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758467|dbj|BAB08996.1| quinone oxidoreductase [Arabidopsis thaliana] gi|21618282|gb|AAM67332.1| quinone oxidoreductase-like protein [Arabidopsis thaliana] gi|28393593|gb|AAO42216.1| putative quinone oxidoreductase [Arabidopsis thaliana]

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 165/188 (87%), Positives = 178/188 (94%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVK IRVYEHG PEVLKWEDVE+GEP EGEIRV+NKAIGLNFIDVY+RKGVYKPA MPFT
Sbjct: 1   MVKGIRVYEHGGPEVLKWEDVEVGEPKEGEIRVKNKAIGLNFIDVYFRKGVYKPASMPFT 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PGMEAVGEVVAVG GLTGR +GD++AYAG  MG+YAEEQILPA+KVVPVPSSIDP++AAS
Sbjct: 61  PGMEAVGEVVAVGSGLTGRMIGDLVAYAGNPMGAYAEEQILPADKVVPVPSSIDPIVAAS 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           IMLKGMTAQFLLRRCFKVEPGHT+L+ AAAGGVGSLLCQWANALGATVIGTVST EKAAQ
Sbjct: 121 IMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAAQ 180

Query: 249 AKDDGCHH 256
           AK+DGCHH
Sbjct: 181 AKEDGCHH 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797111|ref|XP_002866440.1| hypothetical protein ARALYDRAFT_496310 [Arabidopsis lyrata subsp. lyrata] gi|297312275|gb|EFH42699.1| hypothetical protein ARALYDRAFT_496310 [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/205 (81%), Positives = 184/205 (89%), Gaps = 1/205 (0%)

Query: 53  KALATKAAAE-TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI 111
           +AL+T    E +  +  MVK IRVYEHG PEVLKWEDVE+GEP EGEIRV+NKAIGLNFI
Sbjct: 63  RALSTTVVVEESPEKKKMVKGIRVYEHGGPEVLKWEDVEVGEPKEGEIRVKNKAIGLNFI 122

Query: 112 DVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPA 171
           DVY+RKGVYKPA MPFTPGMEAVGEVVAVG GLTGR +GD++AYAG  MG+YAEEQILPA
Sbjct: 123 DVYFRKGVYKPASMPFTPGMEAVGEVVAVGSGLTGRMIGDLVAYAGNPMGAYAEEQILPA 182

Query: 172 NKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANA 231
           +KVVPVPSSIDP++AASIMLKGMTAQFLLRRC KVE GHT+L+ AAAGGVGSLLCQWANA
Sbjct: 183 DKVVPVPSSIDPILAASIMLKGMTAQFLLRRCSKVERGHTILVHAAAGGVGSLLCQWANA 242

Query: 232 LGATVIGTVSTKEKAAQAKDDGCHH 256
           LGATVIGTVST EKAAQAK+DGCHH
Sbjct: 243 LGATVIGTVSTNEKAAQAKEDGCHH 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129570|ref|XP_002328749.1| predicted protein [Populus trichocarpa] gi|222839047|gb|EEE77398.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 175/188 (93%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVK+IRV+E G PEVLKWEDVEI EPG+GEIRV+NKAIGLNFIDVY+RKGVYK + MPFT
Sbjct: 1   MVKSIRVHELGGPEVLKWEDVEIREPGQGEIRVKNKAIGLNFIDVYFRKGVYKASTMPFT 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PGMEAVGEV+A+GPG+T R VG+++ YAGG MGSY EEQILPANKVVPVP SI P +AAS
Sbjct: 61  PGMEAVGEVIALGPGVTDRKVGEVVGYAGGPMGSYTEEQILPANKVVPVPPSISPSVAAS 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +MLKGMTAQFLLRRCFKVEPGHT+L+QAAAGGVGSLLCQWAN+LGATVIGTVSTKEKAAQ
Sbjct: 121 VMLKGMTAQFLLRRCFKVEPGHTILVQAAAGGVGSLLCQWANSLGATVIGTVSTKEKAAQ 180

Query: 249 AKDDGCHH 256
           AKDDGCHH
Sbjct: 181 AKDDGCHH 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138152|ref|XP_002326531.1| predicted protein [Populus trichocarpa] gi|222833853|gb|EEE72330.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 162/188 (86%), Positives = 172/188 (91%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVKAIRV+E G PEVLKWEDVEIGEPGEGEIRV+NKAIGLNFIDVYYRKGVY  + MPF 
Sbjct: 1   MVKAIRVHELGGPEVLKWEDVEIGEPGEGEIRVKNKAIGLNFIDVYYRKGVYTASTMPFI 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PG EAVGEV+AVGPGLTGR VGD++AYAG  MGSYAEEQILPANKVV VP SI PVIAAS
Sbjct: 61  PGREAVGEVIAVGPGLTGRKVGDVVAYAGDPMGSYAEEQILPANKVVSVPESISPVIAAS 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +MLKGMT QFLLRRCFKVEPGHT+L+ AAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ
Sbjct: 121 VMLKGMTTQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 180

Query: 249 AKDDGCHH 256
           AK+DGC H
Sbjct: 181 AKEDGCQH 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211905343|gb|ACJ11251.1| Ted2 [Gossypium hirsutum]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/188 (84%), Positives = 175/188 (93%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVKAIRV++ G P+VLKWEDVE+GEP EGEIR++NKAIGLNFID+Y+RKGVYK A MPFT
Sbjct: 1   MVKAIRVHQLGGPQVLKWEDVELGEPKEGEIRIKNKAIGLNFIDIYFRKGVYKAATMPFT 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PGMEAVGEV AVGPGLTGR VGDI+AYAG  MGSYAEEQILPA+K+VPVP S+DP+ AAS
Sbjct: 61  PGMEAVGEVTAVGPGLTGRKVGDIVAYAGNPMGSYAEEQILPADKLVPVPPSVDPITAAS 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           IMLKGMTAQFL+RRCFKVE GHTVL+ AAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ
Sbjct: 121 IMLKGMTAQFLVRRCFKVESGHTVLVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 180

Query: 249 AKDDGCHH 256
           AK+DGCHH
Sbjct: 181 AKEDGCHH 188

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1617036|emb|CAA69914.1| Ted2 [Vigna unguiculata]

 Score =  338 bits (868), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 159/188 (84%), Positives = 171/188 (90%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVKAIRV+E G P+VLKWEDVEIGEP EGE+RVRNKA+G+NFIDVY+RKGVYKP   PFT
Sbjct: 1   MVKAIRVHEQGGPQVLKWEDVEIGEPKEGEVRVRNKAVGVNFIDVYFRKGVYKPPSFPFT 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PGMEAVG V AVG GLTGR VGD++AYAG  MGSYAEEQILPANKVVPVPSSIDP IAAS
Sbjct: 61  PGMEAVGVVTAVGAGLTGRQVGDLVAYAGQPMGSYAEEQILPANKVVPVPSSIDPPIAAS 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           IMLKGMT  FL+RRCFKVEPGHT+L+ AAAGGVGSLLCQWANALGATVIGTVS KEKAAQ
Sbjct: 121 IMLKGMTTHFLVRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSNKEKAAQ 180

Query: 249 AKDDGCHH 256
           AK+DGCHH
Sbjct: 181 AKEDGCHH 188

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544208|ref|XP_003540546.1| PREDICTED: quinone oxidoreductase 1-like [Glycine max]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 173/190 (91%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
           ++MVKAIRV+E G P+VLKWEDVEIG+P EGE+RVRNKAIG+NFIDVY+RKGVYK    P
Sbjct: 51  SDMVKAIRVHELGGPQVLKWEDVEIGDPKEGEVRVRNKAIGVNFIDVYFRKGVYKAPSFP 110

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIA 186
           FTPGMEAVG V AVG GLTGR VGD++AYAG  MGSYAEEQILPANKVVPVPSSIDP +A
Sbjct: 111 FTPGMEAVGVVTAVGAGLTGRQVGDLVAYAGQPMGSYAEEQILPANKVVPVPSSIDPAVA 170

Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246
           ASI+LKGMT QFLLRRCF+VEPGHT+L+ AAAGGVGSLLCQWANALGATVIGTVS KEKA
Sbjct: 171 ASIILKGMTTQFLLRRCFQVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSNKEKA 230

Query: 247 AQAKDDGCHH 256
           AQAK+DGCHH
Sbjct: 231 AQAKEDGCHH 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539845|ref|XP_002510987.1| quinone oxidoreductase, putative [Ricinus communis] gi|223550102|gb|EEF51589.1| quinone oxidoreductase, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 171/188 (90%), Gaps = 1/188 (0%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           MVKAIRV+E G PEVLKWEDVEIGEPGEGEIRV+NKAIGLNFIDVY+RKGVY     PFT
Sbjct: 1   MVKAIRVHELGGPEVLKWEDVEIGEPGEGEIRVKNKAIGLNFIDVYFRKGVYT-TPTPFT 59

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PG+EAVGEV+AVGPG+TGR VGDI+AYAG  +GSYAEEQILPAN+VVPVPSSI PV+AAS
Sbjct: 60  PGVEAVGEVIAVGPGITGRRVGDIVAYAGYPIGSYAEEQILPANRVVPVPSSIGPVLAAS 119

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +M KGMTAQFLLR CFKVE GHT+L+ AAAGGVGSLLCQWANALGATVIGTVSTKEK AQ
Sbjct: 120 VMTKGMTAQFLLRHCFKVEQGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTKEKEAQ 179

Query: 249 AKDDGCHH 256
           AKDDGC H
Sbjct: 180 AKDDGCRH 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482805|ref|XP_002271007.2| PREDICTED: quinone oxidoreductase 1 [Vitis vinifera]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 172/204 (84%), Gaps = 6/204 (2%)

Query: 53  KALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID 112
           ++  T AAA       MVKAIRV+E G PEVLKWEDVEIGEP EGEI V+N+AIG+NFID
Sbjct: 55  RSFCTSAAA------TMVKAIRVHELGGPEVLKWEDVEIGEPNEGEICVKNQAIGVNFID 108

Query: 113 VYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPAN 172
           VY+RKGVYK   MPFT GMEAVG V AVGPG+TGR VGD++AYAG  MGSY+EEQILPAN
Sbjct: 109 VYFRKGVYKATTMPFTLGMEAVGVVTAVGPGITGRKVGDVVAYAGTPMGSYSEEQILPAN 168

Query: 173 KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL 232
           +VVPVP SIDP + ASIMLKGMT  +L+RRCFKVEPGH VL+ AAAGG+GSLLCQWANAL
Sbjct: 169 RVVPVPPSIDPTVGASIMLKGMTVHYLVRRCFKVEPGHIVLVHAAAGGIGSLLCQWANAL 228

Query: 233 GATVIGTVSTKEKAAQAKDDGCHH 256
           GATVIGTVST EKA QAK+DGCHH
Sbjct: 229 GATVIGTVSTNEKAVQAKEDGCHH 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2151581	406	AT5G61510 [Arabidopsis thalian	0.734	0.463	0.75	7.5e-73
UNIPROTKB|Q4KKQ5	325	qor_2 "NADPH:quinone reductase	0.710	0.56	0.461	3.7e-39
UNIPROTKB|Q48QH7	325	qor1 "Quinone oxidoreductase"	0.710	0.56	0.467	5.5e-38
TIGR_CMR|SPO_0232	327	SPO_0232 "quinone oxidoreducta	0.691	0.541	0.426	8.5e-33
UNIPROTKB|P28304	327	qor [Escherichia coli K-12 (ta	0.722	0.565	0.389	9.8e-32
UNIPROTKB|Q4KE80	324	qor_1 "NADPH:quinone reductase	0.722	0.570	0.408	1.3e-31
UNIPROTKB|O53146	328	qor "NADPH2:quinone reductase"	0.703	0.548	0.419	4.4e-29
UNIPROTKB|Q0BYL8	325	HNE_2746 "Putative quinone oxi	0.687	0.541	0.424	5e-28
UNIPROTKB|Q2GL79	326	qor "Quinone oxidoreductase" [	0.734	0.576	0.343	1.3e-27
TIGR_CMR|APH_0257	326	APH_0257 "quinone oxidoreducta	0.734	0.576	0.343	1.3e-27

TAIR|locus:2151581 AT5G61510 [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 141/188 (75%), Positives = 152/188 (80%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             MVK IRVYEHG PEVLKWEDVE+GEP EGEIRV+NKAIGLNFIDVY+RKGVYKPA MPFT
Sbjct:    83 MVKGIRVYEHGGPEVLKWEDVEVGEPKEGEIRVKNKAIGLNFIDVYFRKGVYKPASMPFT 142

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            LTGR +GD++AYAG  MG+YAEEQILPA+K            AAS
Sbjct:   143 PGMEAVGEVVAVGSGLTGRMIGDLVAYAGNPMGAYAEEQILPADKVVPVPSSIDPIVAAS 202

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             IMLKGMTAQFLLRRCFKVEPGHT+L+ AAAGGVGSLLCQWANALGATVIGTVST EKAAQ
Sbjct:   203 IMLKGMTAQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTNEKAAQ 262

Query:   249 AKDDGCHH 256
             AK+DGCHH
Sbjct:   263 AKEDGCHH 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEP

UNIPROTKB|Q4KKQ5 qor_2 "NADPH:quinone reductase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 84/182 (46%), Positives = 110/182 (60%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M K I+   HG PEVL++ D +  EPG  ++RV NKAIGLNFID Y+R G+Y P  +P  
Sbjct:     1 MAKRIQFRAHGGPEVLEYVDYQPAEPGPQQVRVSNKAIGLNFIDTYFRSGLYAPPALPSG 60

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            +T   VGD +AY  G +G+Y++  +LP               AA 
Sbjct:    61 LGAEGAGVVEAVGSAVTRFKVGDRVAYGSGPLGAYSDVHVLPEANLVRLPDAISFEQAAG 120

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             +MLKG+T Q+LLR+ ++++ G TVL  AAAGGVGSL CQWA ALG  +IGTVS+ EKAA 
Sbjct:   121 VMLKGLTVQYLLRQTYELQGGETVLFHAAAGGVGSLACQWAKALGVKLIGTVSSPEKAAI 180

Query:   249 AK 250
             AK
Sbjct:   181 AK 182

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q48QH7 qor1 "Quinone oxidoreductase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 85/182 (46%), Positives = 109/182 (59%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M K I+    G PEVL++ D E   PG   + VRNKAIGLNFID YYR G+Y   ++P  
Sbjct:     1 MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPELPSG 60

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            +T   VGD +AY  G +G+Y+E  +LP               AA+
Sbjct:    61 LGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAA 120

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             +MLKG+T Q+LLR+ ++V+PG  +L  AAAGGVGSL CQWA ALGA +IGTVS+ EKAA 
Sbjct:   121 LMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAH 180

Query:   249 AK 250
             AK
Sbjct:   181 AK 182

GO:0055114 "oxidation-reduction process" evidence=ISS

TIGR_CMR|SPO_0232 SPO_0232 "quinone oxidoreductase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 76/178 (42%), Positives = 100/178 (56%)

Query:    79 GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXXXXX 138
             G PEVL+  D+ +GEPG GE+R+R++A GLNFIDVY R G+Y P  +P            
Sbjct:    14 GGPEVLQLRDLPVGEPGPGELRIRHQACGLNFIDVYQRTGLY-PLALPHALGMEAAGIVE 72

Query:   139 XXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQF 198
                  +T    GD  AYA    G+YA+ +++PA +            AA++MLKG+T  +
Sbjct:    73 AVGEGVTHLKPGDRAAYAATPPGAYAQARVMPAAQVCPLPDEISFDQAAAMMLKGLTVDY 132

Query:   199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
             L  R   +  G TVL  AAAGGVG + CQWA A G T+IGT  + EK A AK  G  H
Sbjct:   133 LFHRTTPLSRGDTVLFHAAAGGVGLIACQWAKAEGITLIGTAGSDEKCALAKAHGATH 190

GO:0008152 "metabolic process" evidence=ISS

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=ISS

UNIPROTKB|P28304 qor [Escherichia coli K-12 (taxid:83333)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 72/185 (38%), Positives = 99/185 (53%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M   I  ++HG PEVL+  +    +P E EI+V NKAIG+NFID Y R G+Y P  +P  
Sbjct:     1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG 60

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            +     GD + YA  A+G+Y+    + A+K            AA+
Sbjct:    61 LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA 120

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
               LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV T +KA  
Sbjct:   121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 180

Query:   249 AKDDG 253
             A   G
Sbjct:   181 ALKAG 185

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

UNIPROTKB|Q4KE80 qor_1 "NADPH:quinone reductase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 76/186 (40%), Positives = 102/186 (54%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M+ AIR  + G PEVLK E V    PG GE+ +  +AIG+NF+DV  RKGV  P  +P  
Sbjct:     1 MISAIRFNQFGAPEVLKLEPVNEQLPGPGEVWIEQEAIGVNFLDVTQRKGV-TPVALPSV 59

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            ++   VGD +AYA G +GSYA  ++ PA +            AA+
Sbjct:    60 LGLEGAGRVVIIGEGVSNVQVGDRVAYATGPIGSYASARLYPAERLVKIPETLSFDDAAA 119

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             +M KG+TAQ+LL+  + V  G TVLI   AGG+G ++  WA  LGATVIG VS +    +
Sbjct:   120 VMFKGITAQYLLKTTYPVTHGKTVLIYGVAGGLGEIMVPWAKHLGATVIGVVSKQASVEK 179

Query:   249 AKDDGC 254
             A   GC
Sbjct:   180 ALTSGC 185

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|O53146 qor "NADPH2:quinone reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 78/186 (41%), Positives = 102/186 (54%)

Query:    72 AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXX 131
             AI V E G P VL+  D    +PG GE+ ++ +AIG+NFID Y+R G Y P ++PF    
Sbjct:     3 AIEVTETGGPGVLRHVDQPQPQPGHGELLIKAEAIGVNFIDTYFRSGQY-PRELPFVIGS 61

Query:   132 XXXXXXXXXXXXLTGR----TVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAA 187
                         +T      +VGD +  A  A G+YAE    PA+             AA
Sbjct:    62 EVCGTVEAVGPGVTAADTAISVGDRVVSAS-ANGAYAEFCTAPASLTAKVPDDVTSEVAA 120

Query:   188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
             S +LKG+TA +LL+  + V+ G TVL+ A AGGVG +L QWA  LG  VI TVST EKA 
Sbjct:   121 SALLKGLTAHYLLKSVYPVKRGDTVLVHAGAGGVGLILTQWATHLGVRVITTVSTAEKAK 180

Query:   248 QAKDDG 253
              +KD G
Sbjct:   181 LSKDAG 186

GO:0005576 "extracellular region" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q0BYL8 HNE_2746 "Putative quinone oxidoreductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/179 (42%), Positives = 95/179 (53%)

Query:    72 AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXX 131
             AIR+ + G PEVL  E +    PG GE  VR  A+GLNFID Y+R G+Y P K+P T   
Sbjct:     8 AIRIQKTGGPEVLAAEAIAPRAPGAGEALVRQTAVGLNFIDTYHRSGLY-PMKLPATLGS 66

Query:   132 XXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIML 191
                         +T    GD +AY  G  G+YA      A               A++ML
Sbjct:    67 EAAGVVEAVGEGVTHLKAGDRVAYLAG--GTYATHYTGAAASMVSLPDFVSDEEGAALML 124

Query:   192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250
             KG+TA  LL     V+ G TVLI A  GGVG++L  WA  LGA VIG  S++EKAA+AK
Sbjct:   125 KGLTAWMLLFEIRPVKAGDTVLIWAPVGGVGTILTPWAAHLGARVIGVTSSEEKAAKAK 183

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q2GL79 qor "Quinone oxidoreductase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 65/189 (34%), Positives = 97/189 (51%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M + + + + G PEV+++ DVEIGEPG GE+ V + AIGL+  DV  R G+ K   +P+T
Sbjct:     1 MTRTVVIEKTGGPEVMQFVDVEIGEPGRGEVLVEHTAIGLSRFDVECRAGIRKVKSLPYT 60

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            +    +GD + Y   + GSY+EE+I+                AA+
Sbjct:    61 PGVQAVGVVKKVGPDVEALNIGDRVGYCTASGGSYSEERIIDQKYLFKISDVVNDEVAAA 120

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
              + K MTA +L  R + V PG   L+   +GGVG+++CQWA   G  VIG V +      
Sbjct:   121 CIFKAMTAHYLTHRVYDVRPGTFALVYGVSGGVGNIICQWARHKGCEVIGVVGSDGYGVN 180

Query:   249 -AKDDGCHH 256
              A+D GC +
Sbjct:   181 IARDAGCSY 189

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|APH_0257 APH_0257 "quinone oxidoreductase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 65/189 (34%), Positives = 97/189 (51%)

Query:    69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
             M + + + + G PEV+++ DVEIGEPG GE+ V + AIGL+  DV  R G+ K   +P+T
Sbjct:     1 MTRTVVIEKTGGPEVMQFVDVEIGEPGRGEVLVEHTAIGLSRFDVECRAGIRKVKSLPYT 60

Query:   129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                            +    +GD + Y   + GSY+EE+I+                AA+
Sbjct:    61 PGVQAVGVVKKVGPDVEALNIGDRVGYCTASGGSYSEERIIDQKYLFKISDVVNDEVAAA 120

Query:   189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
              + K MTA +L  R + V PG   L+   +GGVG+++CQWA   G  VIG V +      
Sbjct:   121 CIFKAMTAHYLTHRVYDVRPGTFALVYGVSGGVGNIICQWARHKGCEVIGVVGSDGYGVN 180

Query:   249 -AKDDGCHH 256
              A+D GC +
Sbjct:   181 IARDAGCSY 189

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-104
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-66
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-62
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-56
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	9e-51
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-49
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	3e-49
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	9e-47
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-42
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	6e-42
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-41
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-38
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	9e-38
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-37
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	4e-37
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-36
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	4e-36
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	9e-35
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	3e-34
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-34
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	5e-33
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-32
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	8e-32
smart00829	287	smart00829, PKS_ER, Enoylreductase	2e-31
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	4e-30
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	5e-30
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-29
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	4e-28
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-27
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	9e-26
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	4e-25
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	7e-25
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	8e-25
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	4e-24
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	6e-24
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-23
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	8e-23
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-22
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-22
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	5e-22
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	6e-22
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	9e-22
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	4e-21
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-19
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	4e-19
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-18
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-18
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	2e-17
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-17
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	9e-16
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-15
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-15
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	2e-15
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-15
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-15
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-14
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	2e-14
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	3e-14
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	2e-13
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-12
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-11
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	5e-11
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	8e-11
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	9e-11
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	3e-10
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	3e-10
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	6e-10
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	6e-10
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	9e-10
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-09
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	2e-09
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-09
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	8e-09
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-08
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-08
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-08
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-08
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	5e-08
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	5e-08
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	7e-08
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	2e-07
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	5e-07
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	6e-07
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	8e-07
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	2e-06
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	3e-06
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-06
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	3e-06
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-06
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	3e-05
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-05
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	2e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-04
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	6e-04
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	6e-04
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	0.001
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	0.002
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	0.002
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	0.002
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	0.003
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	0.003
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	0.004

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  304 bits (782), Expect = e-104
 Identities = 104/186 (55%), Positives = 139/186 (74%), Gaps = 2/186 (1%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+R+++ G PEVL++EDV + EPG GE+ VRN AIG+NFID Y+R G+Y P  +PF  G
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLY-PLPLPFVLG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIM 190
           +E  G V AVGPG+TG  VGD +AYAG   G+YAE +++PA+++V +P  I    AA+++
Sbjct: 60  VEGAGVVEAVGPGVTGFKVGDRVAYAG-PPGAYAEYRVVPASRLVKLPDGISDETAAALL 118

Query: 191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250
           L+G+TA +LLR  + V+PG TVL+ AAAGGVG LL QWA ALGATVIGTVS++EKA  A+
Sbjct: 119 LQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR 178

Query: 251 DDGCHH 256
             G  H
Sbjct: 179 AAGADH 184

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  208 bits (532), Expect = 2e-66
 Identities = 90/189 (47%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTP 129
           KA+ V E G PEVLK  +V   EPG GE+ VR KA G+N IDV  R+G+  P   +PF P
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGD--IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA 187
           G EA G VVAVG G+TG  VGD        G  G YAE  ++PA+ +VP+P  +    AA
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAA 121

Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ L G+TA   L     ++PG TVL+  AAGGVGS   Q A ALGATV+  VS+ EK  
Sbjct: 122 ALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE 181

Query: 248 QAKDDGCHH 256
             K+ G  H
Sbjct: 182 LLKELGADH 190

Length = 326

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score =  198 bits (506), Expect = 2e-62
 Identities = 83/185 (44%), Positives = 116/185 (62%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M K I  ++HG PEVL+  +    +P E E++V NKAIG+N+ID Y R G+Y P  +P  
Sbjct: 1   MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G EA G V  VG G+    VGD + YA  A+G+Y+    +PA+K   +P +I    AA+
Sbjct: 61  LGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV + +KA +
Sbjct: 121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQR 180

Query: 249 AKDDG 253
           AK  G
Sbjct: 181 AKKAG 185

Length = 327

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  181 bits (462), Expect = 6e-56
 Identities = 78/191 (40%), Positives = 108/191 (56%), Gaps = 5/191 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTP 129
           +A+R ++ G PEVL+ E++ +  PG GE+ +R +AIGLN  D  +R+G Y  P  +P   
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARL 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM----GSYAEEQILPANKVVPVPSSIDPVI 185
           G EA G V AVG G+TG  VGD ++    A     G+YAE  ++PA  VV +P  +  V 
Sbjct: 62  GYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVE 121

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA++ ++ +TA   L     + PG +VLI AA+  VG    Q ANA GATVI T  T EK
Sbjct: 122 AAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEK 181

Query: 246 AAQAKDDGCHH 256
                  G  H
Sbjct: 182 RDALLALGAAH 192

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  168 bits (427), Expect = 9e-51
 Identities = 83/189 (43%), Positives = 109/189 (57%), Gaps = 6/189 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPG-EGEIRVRNKAIGLNFIDVYYRKGVY--KPAKMPF 127
           KA+   E G PE L  E+V   EPG  GE+R+R +A G+NF D+   +G Y  KP  +PF
Sbjct: 2   KAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKP-PLPF 59

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA 187
            PG E  G V AVG G+TG  VGD +  A    G +AEE ++PA  V P+P  +    AA
Sbjct: 60  VPGSEVAGVVEAVGEGVTGFKVGDRVV-ALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAA 118

Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ +   TA   L R  +++PG TVL+  AAGGVG    Q A ALGA VI   S++EK A
Sbjct: 119 ALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA 178

Query: 248 QAKDDGCHH 256
            A+  G  H
Sbjct: 179 LARALGADH 187

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  165 bits (420), Expect = 1e-49
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTP 129
           +AIR +E G P+VL+  D+ +  PG GE+ VR  A G+N +D Y R G Y     +P+ P
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDII----AYAGGAMGSYAEEQILPANKVVPVPSSIDPVI 185
           G +  G V AVG G+ G  VGD +       G   G+ AE  ++PA+++VP+P  +    
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQ 121

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
            A++ +  +TA   L      + G TVL+   +G VG    Q A   GA VI T S+ E 
Sbjct: 122 GAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEG 181

Query: 246 AAQAKDDGCHH 256
           A   +  G   
Sbjct: 182 AELVRQAGADA 192

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  163 bits (416), Expect = 3e-49
 Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 6/191 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPF 127
           KA+R++E+G PEVL+  DV   EPG GE+ V+  A G+N +D+  R+G+ K   P  +P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG-GAMGSYAEEQILPANKVVPVPSSIDPVI 185
            PG +  G VVAVGPG+TG  VGD +         G+YAE  ++PA+++   P+++    
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEE 121

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA++ L G+TA   L     ++ G TVLI  AAGGVGS   Q A A GA VI T S    
Sbjct: 122 AAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-N 180

Query: 246 AAQAKDDGCHH 256
           A   +  G   
Sbjct: 181 ADFLRSLGADE 191

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  158 bits (401), Expect = 9e-47
 Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTP 129
           +A+ +   G  + LK E   + EP  GE+RVR +A GLNF D+  R+G+Y  A K PF P
Sbjct: 1   RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVP 60

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           G E  G V AVG G+    VGD ++       G YAE   +PA++V P+P  +    AA+
Sbjct: 61  GFECAGTVEAVGEGVKDFKVGDRVMGLTRF--GGYAEVVNVPADQVFPLPDGMSFEEAAA 118

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAA 247
             +  +TA + L     + PG +VL+ +AAGGVG    Q    +   TV+GT S   K  
Sbjct: 119 FPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTAS-ASKHE 177

Query: 248 QAKDDGCHH 256
             K++G  H
Sbjct: 178 ALKENGVTH 186

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  147 bits (373), Expect = 1e-42
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 8/181 (4%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTP 129
           + + V   G PEVLK  + ++ EP  GE+ V+ +A G++F DV  R+G+Y     +PFTP
Sbjct: 2   REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTP 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM---GSYAEEQILPANKVVPVPSSIDPVIA 186
           G + VG V A+G G+TG  VGD +A    A+   G  AE   L A  +VPVP  +D   A
Sbjct: 62  GYDLVGRVDALGSGVTGFEVGDRVA----ALTRVGGNAEYINLDAKYLVPVPEGVDAAEA 117

Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246
             ++L  +TA  +L R  KV  G  VLI  A+GGVG  L + A   GA V GT S +  A
Sbjct: 118 VCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTASERNHA 177

Query: 247 A 247
           A
Sbjct: 178 A 178

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  145 bits (368), Expect = 6e-42
 Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 4/188 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFTP 129
           KAI + E G PEVL+  +V    PG GE+ +R  A G+N  D+  R+G+Y P        
Sbjct: 2   KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDIL 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           G+E  G VVAVGPG+TG  VGD + A   G  G YAE  ++PA +++PVP  +  V AA+
Sbjct: 62  GLEVAGVVVAVGPGVTGWKVGDRVCALLAG--GGYAEYVVVPAGQLLPVPEGLSLVEAAA 119

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +     TA   L +   ++ G TVLI   A GVG+   Q A ALGA VI T  ++EK   
Sbjct: 120 LPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEA 179

Query: 249 AKDDGCHH 256
            +  G   
Sbjct: 180 CRALGADV 187

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  143 bits (362), Expect = 4e-41
 Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  + + G    L  E++EI  PG GE+ V+  A GLN +D             P  PG
Sbjct: 2   KAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPG 61

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAM--GSYAEEQILPANKVVPVPSSIDPVIAAS 188
           ++  G VVAVG  +TG  VGD +AY       GS+AE  ++ A  V+P+P S+    AA+
Sbjct: 62  VDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAA 121

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243
           +   G+TA   L +  ++E G T+LI   AGGVGS   Q A   G  VI T S +
Sbjct: 122 LPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTCSKR 176

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  136 bits (345), Expect = 2e-38
 Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 5/171 (2%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTPGMEAVGEVVAVGPGLT 145
            DV +  PG GE+ V+N+ +G+N  D+ +  G Y P  K PF  G E VGEVVAVG G+T
Sbjct: 21  VDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80

Query: 146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK 205
              VGD +A      G++AE Q++PA   VPVP     V+   +++ G+TA   L    +
Sbjct: 81  DFKVGDAVATMSF--GAFAEYQVVPARHAVPVPELKPEVL--PLLVSGLTASIALEEVGE 136

Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           ++ G TVL+ AAAGG G    Q A   G  VIGT S+ EKA   K  GC  
Sbjct: 137 MKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDR 187

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  134 bits (340), Expect = 9e-38
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 6/191 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG-VYKPAKMPFTP 129
           KA+ +   G PEV +  +V   +PG G++ VR  A G+N +D   R+G       +P   
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYA----GGAMGSYAEEQILPANKVVPVPSSIDPVI 185
           G +  G V AVG G+T   VGD +       GG  GS AE  ++ A  +   P+++    
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMRE 121

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA++ L G+TA   L     V+ G TVLI   AGGVG +  Q A A GA V  T S+ EK
Sbjct: 122 AAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EK 180

Query: 246 AAQAKDDGCHH 256
           AA A+  G   
Sbjct: 181 AAFARSLGADP 191

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  133 bits (338), Expect = 1e-37
 Identities = 69/191 (36%), Positives = 95/191 (49%), Gaps = 8/191 (4%)

Query: 73  IRVYEHGDPEVLKWEDVEIGEP--GEGEIRVRNKAIGLNFIDVYYRKGVYKPA---KMPF 127
           +    +G PEVL   +VE+  P    GE+ V+  A  +N +D   R+G  K       P 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGD-IIAYAGGA-MGSYAEEQILPANKVVPVPSSIDPVI 185
            PGM+  GEVVAVG G+T   VGD +         G+ AE  + P + +   P  +    
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEE 120

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA++ + G+TA   LR   KV+PG  VLI  A+GGVG+   Q A ALGA V G  ST+  
Sbjct: 121 AAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCSTR-N 179

Query: 246 AAQAKDDGCHH 256
           A   +  G   
Sbjct: 180 AELVRSLGADE 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  131 bits (332), Expect = 4e-37
 Identities = 68/182 (37%), Positives = 89/182 (48%), Gaps = 24/182 (13%)

Query: 98  EIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYA 156
           E+ VR +A GL   D++ R+G Y  P K+P   G E  G VV VGPG+TG  VGD +   
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 157 ----------------------GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM 194
                                  G  G +AE  ++PA+ +VP+P  +    AA +     
Sbjct: 61  PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120

Query: 195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254
           TA   LRR   ++PG TVL+   AGGVG L  Q A A GA VI T  + EK   AK+ G 
Sbjct: 121 TAYHALRRAGVLKPGDTVLVL-GAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA 179

Query: 255 HH 256
            H
Sbjct: 180 DH 181

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score =  130 bits (330), Expect = 2e-36
 Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 4/183 (2%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFT 128
           +KAI + E G PEVL   +V +  P  GE+ +R  A G+N  D+  R G Y P       
Sbjct: 1   MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDI 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA 187
            G+E  GEVVAVG G++   VGD + A   G  G YAE   +PA +V+PVP  +  V AA
Sbjct: 61  LGLEVAGEVVAVGEGVSRWKVGDRVCALVAG--GGYAEYVAVPAGQVLPVPEGLSLVEAA 118

Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++     T    L +   ++ G TVLI   A G+G+   Q A A GA V  T  + EK A
Sbjct: 119 ALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA 178

Query: 248 QAK 250
             +
Sbjct: 179 ACE 181

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  130 bits (329), Expect = 4e-36
 Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 27/213 (12%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTP 129
           KA+ +  HG PEVL++ D+   EPG  E+ VR KA  LN +D++ R+G+      +P   
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM--------------------------GSY 163
           G +  G V AVGPG+T    G  +    G                            G Y
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGY 121

Query: 164 AEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS 223
           AE   +PA  ++P+P ++    AA+  L  +TA  +L    ++ PG TVL+  A  GVGS
Sbjct: 122 AEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGS 181

Query: 224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
              Q A   GATVI T  +++K  +AK+ G  +
Sbjct: 182 AAIQIAKLFGATVIATAGSEDKLERAKELGADY 214

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  125 bits (317), Expect = 9e-35
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 97  GEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAY 155
            E+ V  KA GLNF DV    G+    + P   G+E  G V  VG G+TG  VGD ++  
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETPL--GLECSGIVTRVGSGVTGLKVGDRVMGL 58

Query: 156 AGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ 215
           A GA  ++     + A  VV +P S+    AA++ +  +TA + L    +++ G +VLI 
Sbjct: 59  APGAFATHV---RVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIH 115

Query: 216 AAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
           AAAGGVG    Q A  LGA V  TV ++EK    ++ G
Sbjct: 116 AAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELG 153

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score =  125 bits (315), Expect = 3e-34
 Identities = 78/191 (40%), Positives = 103/191 (53%), Gaps = 11/191 (5%)

Query: 72  AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV---YKPAKMPFT 128
           AIR++E G PEVL  EDV    PG G++R+   A G++F+D   R G      P ++P+ 
Sbjct: 3   AIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYV 62

Query: 129 PGMEAVGEVVAVGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPV 184
           PG E  G V AVGPG      GR V   +A+ G A G YAE  +   + + PVP  +D  
Sbjct: 63  PGGEVAGVVDAVGPGVDPAWLGRRV---VAHTGRAGGGYAELAVADVDSLHPVPDGLDLE 119

Query: 185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244
            A +++  G TA  LL     + PG  VL+ AAAGG+GSLL Q A A GATV+G      
Sbjct: 120 AAVAVVHDGRTALGLLDLA-TLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPA 178

Query: 245 KAAQAKDDGCH 255
           K A  +  G  
Sbjct: 179 KTALVRALGAD 189

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score =  125 bits (315), Expect = 3e-34
 Identities = 69/182 (37%), Positives = 95/182 (52%), Gaps = 7/182 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KAI + + G PEVLK  ++ I EP  G + +R KA GLN  +++ R+G     K P   G
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAM-----GSYAEEQILPANKVVPVPSSIDPVI 185
           +EAVGEV    PG    T G  +A A G M     GSYAE  ++P  +V  + S +    
Sbjct: 62  IEAVGEVEE-APG-GTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAE 119

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
            A++     TA   L R   ++PG T+LI+     VG    + A ALGATV  T  + E+
Sbjct: 120 LAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPER 179

Query: 246 AA 247
           AA
Sbjct: 180 AA 181

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  122 bits (307), Expect = 5e-33
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 73  IRVYEHGDPE--VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--KPAKMPFT 128
           +   + G+P   VL+   + I  PG GE+ VR  A  +N  D+    G Y  +P   P  
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPL-PAV 59

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           PG E VG VV VG G++G  VG  +   GG  G++ E  + PA+ ++PVP SI    AA 
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLPLGGE-GTWQEYVVAPADDLIPVPDSISDEQAAM 118

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240
           + +  +TA  +L    K+ PG  V+  AA   VG +L Q A  LG   I  V
Sbjct: 119 LYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVV 170

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  121 bits (306), Expect = 1e-32
 Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 31/215 (14%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
            +KA  + + G P  L+ E+V + EPG GE+ ++ +A G+   D++  KG +   K+P  
Sbjct: 3   TMKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLI 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGD--IIAYAGGA-------------------------MG 161
           PG E VG VV VG G+TG  VGD   + +   +                          G
Sbjct: 61  PGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDG 120

Query: 162 SYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
            YAE  ++PA  VV +P  +D   AA ++  G+T    L++   V+PG  V +   AGG+
Sbjct: 121 GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKA-NVKPGKWVAV-VGAGGL 178

Query: 222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           G +  Q+A A+GA VI    ++EK   AK  G  H
Sbjct: 179 GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH 213

Length = 339

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score =  118 bits (297), Expect = 8e-32
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 5/170 (2%)

Query: 90  EIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--PAKMPFTPGMEAVGEVVAVGPGLTGR 147
           E+  PG GE+R++ +A  LNF D+   +G+Y   P   PFTPG EA G V AVGP +T  
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPP-YPFTPGFEASGVVRAVGPHVTRL 59

Query: 148 TVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV 206
            VGD +IA  G +MG +A    +P ++VV  P+S+    A ++ +  +T      R   +
Sbjct: 60  AVGDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARA-GL 118

Query: 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
             G  +LIQ A GG G +  Q A   GA +  T S+ +K    K  G  H
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPH 168

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score =  116 bits (294), Expect = 2e-31
 Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 99  IRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG 157
           I VR  A GLNF DV    G+Y         G E  G V  VGPG+TG  VGD ++  A 
Sbjct: 1   IEVR--AAGLNFRDVLIALGLYPG---EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP 55

Query: 158 GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAA 217
           GA  +     +  A  VVP+P       AA++ +  +TA + L    ++ PG +VLI AA
Sbjct: 56  GAFATRV---VTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAA 112

Query: 218 AGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           AGGVG    Q A  LGA V  T  + EK  
Sbjct: 113 AGGVGQAAIQLARHLGAEVFATAGSPEKRD 142

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score =  114 bits (288), Expect = 4e-30
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 13/198 (6%)

Query: 71  KAIRVYEHG---DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPF 127
           KAI   +     DP+ L   ++    PG  ++ VR +A+ +N +D   R G       P 
Sbjct: 2   KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM--GSYAEEQILPANKVVPVPSSIDPVI 185
             G +A G V AVG  +T   VGD + YAG     GS AE Q++    V   P S+    
Sbjct: 62  ILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAE 121

Query: 186 AASIMLKGMTA------QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIG 238
           AA++ L  +TA      +  +    + E G T+LI   AGGVGS+  Q A  L   TVI 
Sbjct: 122 AAALPLTSLTAWEALFDRLGISEDAENE-GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIA 180

Query: 239 TVSTKEKAAQAKDDGCHH 256
           T S  E  A  K+ G  H
Sbjct: 181 TASRPESIAWVKELGADH 198

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  114 bits (287), Expect = 5e-30
 Identities = 64/225 (28%), Positives = 89/225 (39%), Gaps = 41/225 (18%)

Query: 71  KAIRVYEHGDPEVLKW-EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--------- 120
           +A+ +  HG  + L + +DV +  P  GE+ +R  A G+N  D+  R+G Y         
Sbjct: 2   RAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATD 61

Query: 121 -----------KPAKMPFTPGMEAVGEVVAVGPGLTGRTVG------------------D 151
                           P   G + VG VVAVG G+    +G                  D
Sbjct: 62  STGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD 121

Query: 152 IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHT 211
           I        G +AE  ++PA    PV S +  V  A+      TA+ +L R   V  G T
Sbjct: 122 IDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERA-GVGAGET 180

Query: 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           VL+  A+GGVGS L Q A   GA VI       K    +  G   
Sbjct: 181 VLVTGASGGVGSALVQLAKRRGAIVIAVAG-AAKEEAVRALGADT 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  111 bits (280), Expect = 5e-29
 Identities = 74/207 (35%), Positives = 96/207 (46%), Gaps = 22/207 (10%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTP 129
           KA R+   G  + LK  +  + EPG GE+ VR  A+ LN+ D+    G Y P  K P  P
Sbjct: 2   KAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIP 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGD----II----------------AYAGGAMGSYAEEQIL 169
             +  GEVVAVG G+T   VGD                      A  G   G  AE  +L
Sbjct: 62  LSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVL 121

Query: 170 PANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA 229
           P   +V  P  +    AA++   G+TA   L     ++PG TVL+Q   GGV     Q+A
Sbjct: 122 PEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVSLFALQFA 180

Query: 230 NALGATVIGTVSTKEKAAQAKDDGCHH 256
            A GA VI T S+ EK  +AK  G  H
Sbjct: 181 KAAGARVIATSSSDEKLERAKALGADH 207

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  109 bits (274), Expect = 4e-28
 Identities = 67/214 (31%), Positives = 97/214 (45%), Gaps = 30/214 (14%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTP 129
           KA  V E G+      +DV + EPG GE+ V+ +A G+   D++   G +    K+P   
Sbjct: 2   KAAVVEEFGEKPYEV-KDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYA-------------------------GGAM--GS 162
           G E  G VVAVGPG++G  VGD +                             G    G+
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGT 120

Query: 163 YAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG 222
           +AE  I  A  V P+P  +    AA ++  G+T    L++   ++PG  V+I  A GG+G
Sbjct: 121 FAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKA-GLKPGDWVVISGAGGGLG 179

Query: 223 SLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
            L  Q+A A+G  VI      EK   AK+ G   
Sbjct: 180 HLGVQYAKAMGLRVIAIDVGDEKLELAKELGADA 213

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  107 bits (268), Expect = 2e-27
 Identities = 64/209 (30%), Positives = 89/209 (42%), Gaps = 29/209 (13%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  +++   P  L+ E+V   EPG GE+ ++ KA G+ + D+ + KG +   K P   G
Sbjct: 2   KAAILHKPNKP--LQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGD--------------------------IIAYAGGAMGSYA 164
            E VG V  VG G+     GD                             Y     G +A
Sbjct: 60  HEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFA 119

Query: 165 EEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224
           E   +P   +V +P ++    AA       TA   L+R   V+ G TVL+  A GGVG  
Sbjct: 120 EYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRA-GVKKGDTVLVTGAGGGVGIH 178

Query: 225 LCQWANALGATVIGTVSTKEKAAQAKDDG 253
             Q A ALGA VI    + EK    K+ G
Sbjct: 179 AIQLAKALGARVIAVTRSPEKLKILKELG 207

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  102 bits (257), Expect = 9e-26
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 31/213 (14%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  V+  G P  L+ E+V + EPG GE+ ++ +A G+   D++  +G +  +K P  PG
Sbjct: 1   KAAVVHAAGGP--LEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPG 58

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA--------------------YAGGAM-------GSY 163
            E VGEVV VG G+ GR VGD +                         A+       G Y
Sbjct: 59  HEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGY 118

Query: 164 AEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS 223
           AE  +  A   V +P  +    AA ++  G+T    LR      PG  V +    GG+G 
Sbjct: 119 AEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAV-LGIGGLGH 176

Query: 224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           L  Q+A A+G   +    + +K   A+  G   
Sbjct: 177 LAVQYARAMGFETVAITRSPDKRELARKLGADE 209

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  100 bits (252), Expect = 4e-25
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 6/185 (3%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M++A+ +   G  +VLK  +     P   ++ ++  A G+N  D   R+G Y P     +
Sbjct: 1   MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPP-GSS 59

Query: 129 P--GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI 185
              G+E  G V  VG  +     GD ++A   G  G YAE  +     V+ +P       
Sbjct: 60  EILGLEVAGYVEDVGSDVKRFKEGDRVMALLPG--GGYAEYAVAHKGHVMHIPQGYTFEE 117

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA+I    +TA  LL++   V+ G +VLI A A GVG+   Q A   GA  I T S++EK
Sbjct: 118 AAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEK 177

Query: 246 AAQAK 250
               K
Sbjct: 178 VDFCK 182

Length = 334

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  100 bits (251), Expect = 7e-25
 Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 39/217 (17%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA++V E G P  L   DV    PG GE+ ++ +A G+   D + ++G       P  PG
Sbjct: 2   KAVQVTEPGGPLELVERDVP--LPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDI-------------------------------IAYAGGA 159
            E VG + AVG G++   VGD                                +   GG 
Sbjct: 60  HEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGG- 118

Query: 160 MGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG 219
              YAE  + PA  +  +P  +D   AA ++  G+T    LR     +PG  V +Q   G
Sbjct: 119 ---YAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS-GAKPGDLVAVQ-GIG 173

Query: 220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           G+G L  Q+A  +G   +      +KA  A+  G HH
Sbjct: 174 GLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHH 210

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score =  100 bits (250), Expect = 8e-25
 Identities = 67/199 (33%), Positives = 92/199 (46%), Gaps = 15/199 (7%)

Query: 71  KAIRVYEH---GDPEVLKWEDVEIGEP--GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKM 125
           KA+   +     DP+ L   D+++ +P  G  ++ V  KAI +N +D   R  +   A  
Sbjct: 1   KAVGYKKPLPITDPDAL--VDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQ 58

Query: 126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM--GSYAEEQILPANKVVPVPSSIDP 183
           P   G +A G VVAVG  +T    GD + YAG     GS AE  ++    V   P S+  
Sbjct: 59  PKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSF 118

Query: 184 VIAASIMLKGMTAQFLLRRCFKVEPG-----HTVLIQAAAGGVGSLLCQWANAL-GATVI 237
             AA++ L  +TA  LL     +          +LI   AGGVGS+L Q A  L G TVI
Sbjct: 119 AEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVI 178

Query: 238 GTVSTKEKAAQAKDDGCHH 256
            T S  E      + G HH
Sbjct: 179 ATASRPESQEWVLELGAHH 197

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 98.4 bits (246), Expect = 4e-24
 Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 7/189 (3%)

Query: 71  KAIRVYEHGDP-EVLKWEDVEIGEPGE-GEIRVRNKAIGLNFIDVYYRKGVY--KPAKM- 125
           KA+   EHG+P EVL+ E  EI  PG   E+ V+  A  +N  D+   +GVY  KP    
Sbjct: 2   KALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTP 61

Query: 126 --PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDP 183
             P   G E VGEVV VG G+     GD +      +G++    ++PA+ ++ VP+ +DP
Sbjct: 62  EPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDP 121

Query: 184 VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243
             AA++ +   TA  LL    K++PG  V+   A   VG  + Q A  LG   I  V  +
Sbjct: 122 EQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR 181

Query: 244 EKAAQAKDD 252
               + K+ 
Sbjct: 182 PDLEELKER 190

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 97.8 bits (244), Expect = 6e-24
 Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 4/178 (2%)

Query: 78  HGDPE-VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVG 135
            GDP  VL+  +V    PG GE+ VR     ++  D++  +G Y    ++P   G EAVG
Sbjct: 9   FGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVG 68

Query: 136 EVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195
            V AVG G+ G  VG  +A      G++AE  + PA+ +VP+P  I   +AA ++   ++
Sbjct: 69  VVDAVGEGVKGLQVGQRVA-VAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLS 127

Query: 196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
           A  +L     V+PG  ++  AA G VG L+   A A G  VI  V      A+ +  G
Sbjct: 128 A-LMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALG 184

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 96.9 bits (242), Expect = 1e-23
 Identities = 67/207 (32%), Positives = 92/207 (44%), Gaps = 28/207 (13%)

Query: 75  VYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKPAKMPFTPGMEA 133
            +  G   +L  E+V + EPG GE+ V+ KA G+   D+     GV    K+P T G E 
Sbjct: 5   RFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEI 64

Query: 134 VGEVVAVGPGLTGRTVGDIIAYAG--------------------------GAMGSYAEEQ 167
            G VV VG G+T   VGD +A                             G  G +AE  
Sbjct: 65  AGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYI 124

Query: 168 ILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227
           ++PA  +VPVP  +    AA      +T    + R  +V+PG TVL+    GG+G    Q
Sbjct: 125 VVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVI-GLGGLGLNAVQ 183

Query: 228 WANALGATVIGTVSTKEKAAQAKDDGC 254
            A A+GA VI     +EK   AK+ G 
Sbjct: 184 IAKAMGAAVIAVDIKEEKLELAKELGA 210

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 94.9 bits (237), Expect = 8e-23
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 27/193 (13%)

Query: 74  RVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR-----KGVYKPAKMPFT 128
           R      P+  +  +V + E  +GE+ VR   + +   D Y R        Y P   P  
Sbjct: 10  RPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSP---PVQ 63

Query: 129 PG--MEA--VGEVVAVG-PGLTGRTVGDIIAYAGGAMGSYAEEQILPANK---VVPVPSS 180
            G  M    VGEVV    P      VGD+++        + E  ++        +     
Sbjct: 64  LGEPMRGGGVGEVVESRSPDFK---VGDLVS----GFLGWQEYAVVDGASGLRKLDPSLG 116

Query: 181 IDPVIAASIM-LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239
           +       ++ + G+TA F L    K +PG TV++ AAAG VGS++ Q A  LGA V+G 
Sbjct: 117 LPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGI 176

Query: 240 VSTKEKAAQAKDD 252
             + EK     ++
Sbjct: 177 AGSDEKCRWLVEE 189

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  +   G   ++   DV + +PG  E+ V+ KA+ LN +D  ++   + P   P   G
Sbjct: 2   KAAVLTGPGGGLLVV-VDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIP-SYPAILG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA-YAGGAM------GSYAEEQILPANKVVPVPSSIDP 183
            +  G VV VG G+T   VGD +A +  G        G++ E  +  A+    +P +I  
Sbjct: 60  CDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISF 119

Query: 184 VIAASIMLKGMTAQFLLRRCFKV----------EPGHTVLIQAAAGGVGSLLCQWANALG 233
             AA++ +  +TA   L +   +            G  VLI   +  VG+L  Q A   G
Sbjct: 120 EEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAG 179

Query: 234 ATVIGTVSTK 243
             VI T S K
Sbjct: 180 YKVITTASPK 189

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 36/218 (16%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA---KMPF 127
           KA R+YE+G P  L+ EDV + EPG G++ VR    G+   D++   GV+      K+PF
Sbjct: 2   KAARLYEYGKP--LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPF 59

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG-------------------------GAMG 161
           T G E  G V  VG G+ G   GD ++ +                           G  G
Sbjct: 60  TLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDG 119

Query: 162 SYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGG 220
            +AE  ++P+ ++V +P  +DPV AA +   G+TA   +++     +PG TV++    GG
Sbjct: 120 GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVV-IGVGG 178

Query: 221 VGSLLCQWANAL-GATVIGTVSTKEKAAQ-AKDDGCHH 256
           +G +  Q   AL  ATVI  V   E+A + A+  G  H
Sbjct: 179 LGHIAVQILRALTPATVIA-VDRSEEALKLAERLGADH 215

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 92.4 bits (230), Expect = 5e-22
 Identities = 66/200 (33%), Positives = 93/200 (46%), Gaps = 30/200 (15%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+ V+E    E LK EDV+  +PG GE+ +R K  G+N +D Y      K   MP  PG
Sbjct: 2   KAL-VFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVD-YNVINAVKVKPMPHIPG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGD-IIAY--------------------AGGAM-----GSYA 164
            E  G V  VG  + G   GD ++ Y                     GG +     G YA
Sbjct: 60  AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYA 119

Query: 165 EEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224
           E  ++P   +  +P SI   +AAS+ +  +TA   L+    + PG TV++  A+G  G  
Sbjct: 120 EYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTA-GLGPGETVVVFGASGNTGIF 178

Query: 225 LCQWANALGATVIGTVSTKE 244
             Q A  +GA VI  VS K+
Sbjct: 179 AVQLAKMMGAEVI-AVSRKD 197

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 92.4 bits (230), Expect = 6e-22
 Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKM--PFTPGMEAVGEVVAVG--P 142
           E+V++ EPGEG++ +R   + L   D Y R  +        P   G   VG  VA     
Sbjct: 30  EEVDVPEPGEGQVLLRTLYLSL---DPYMRGRMSDAPSYAPPVELGEVMVGGTVAKVVAS 86

Query: 143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA--SIMLKGMTAQFLL 200
              G   GDI+      +  + E  I     +  +  S  P+ A    + + G+TA F L
Sbjct: 87  NHPGFQPGDIVV----GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGL 142

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
               + + G TV++ AAAG VGS++ Q A   G  V+G     EK     ++ 
Sbjct: 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL 195

Length = 340

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 91.9 bits (229), Expect = 9e-22
 Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 16/196 (8%)

Query: 71  KAIRVYEHGDPEVLK---WEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMP 126
           KA+ + E+G P  +K     + E+ EPG GE+ ++ +A  +N  D+ + KG Y     +P
Sbjct: 2   KALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALP 61

Query: 127 FTPGMEAVGEVVAVGPG-----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSI 181
             PG E  G VVA G G     L G+ V    A+  G+ G+YAE  +  A + +P+P  +
Sbjct: 62  VPPGFEGSGTVVAAGGGPLAQSLIGKRV----AFLAGSYGTYAEYAVADAQQCLPLPDGV 117

Query: 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ-AAAGGVGSLLCQWANALGATVIGTV 240
                AS  +  +TA  +L      E G   ++  AAA  +G +L +   A G  VI  V
Sbjct: 118 SFEQGASSFVNPLTALGMLETA--REEGAKAVVHTAAASALGRMLVRLCKADGIKVINIV 175

Query: 241 STKEKAAQAKDDGCHH 256
             KE+    K  G  +
Sbjct: 176 RRKEQVDLLKKIGAEY 191

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 59/205 (28%), Positives = 84/205 (40%), Gaps = 35/205 (17%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+ +        +  E+V   +PG+ E+ ++    GL + D+   +G Y   K P   G
Sbjct: 2   KAVILPGFKQGYRI--EEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA--------------------------YAGGAMGSYA 164
            E VG V  VG  + G   GD +A                          Y     G +A
Sbjct: 60  HEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFA 119

Query: 165 EEQILPANKVVPVPSSID---PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
           E   +    +V VP ++     VI   +   GM  + L R    V+ G TVL+  A GGV
Sbjct: 120 EYAKVKVTSLVKVPPNVSDEGAVIVPCVT--GMVYRGLRR--AGVKKGETVLVTGAGGGV 175

Query: 222 GSLLCQWANALGATVIGTVSTKEKA 246
           G    Q A ALGA VI   S++ KA
Sbjct: 176 GIHAIQVAKALGAKVIAVTSSESKA 200

Length = 334

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 96  EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAY 155
            GE+ VR KA G+   D++  +G   P K+P   G E  G V  VGPG+TG  VGD +  
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 156 AG--------------------------GAMGSYAEEQILPANKVVPV 177
                                          G +AE  ++PA  +VP+
Sbjct: 61  YPLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 84.5 bits (210), Expect = 4e-19
 Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 36/208 (17%)

Query: 83  VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP 142
            L+    E    G  ++ ++    G+   D++  +  + P K P  PG E VG VVAVG 
Sbjct: 11  KLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGS 70

Query: 143 GLTGRTVGD----------------------------IIAYAG------GAMGSYAEEQI 168
            +T   VGD                            ++ Y G         G YA+  +
Sbjct: 71  KVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIV 130

Query: 169 LPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228
           +    V  +P  +D   AA ++  G+T    L+R   V PG  V +    GG+G L  ++
Sbjct: 131 VDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGVGPGKRVGV-VGIGGLGHLAVKF 188

Query: 229 ANALGATVIGTVSTKEKAAQAKDDGCHH 256
           A ALGA V     +  K   A   G   
Sbjct: 189 AKALGAEVTAFSRSPSKKEDALKLGADE 216

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 33/215 (15%)

Query: 71  KAIRVYEHGDPEV--LKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           KA+ + + G  E   L+  +V + EPG GE+ ++ +A G+   D++  +G   P K+P  
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDI--IAYAGGAMGS------------------------ 162
           PG E VG V AVGPG+T  +VGD   + + G   G                         
Sbjct: 62  PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDG 121

Query: 163 -YAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
            YAE  +       P+P   D   AA ++  G+     L+    ++PG  + +    G  
Sbjct: 122 GYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLA-GLKPGQRLGL-YGFGAS 179

Query: 222 GSLLCQWANALGATVIGTVSTKEKAAQ-AKDDGCH 255
             L  Q A   GA V    +   +  + A++ G  
Sbjct: 180 AHLALQIARYQGAEVFA-FTRSGEHQELARELGAD 213

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 69/230 (30%), Positives = 90/230 (39%), Gaps = 54/230 (23%)

Query: 79  GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVV 138
           G    L  E++ +  P EGEI +R  A G+   D++  KG   P   PF  G E  GEVV
Sbjct: 8   GPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGEL-PFPPPFVLGHEISGEVV 66

Query: 139 AVGPGLTG--------RTVGDIIAYAG--------------------------------- 157
            VGP +          R VG  I   G                                 
Sbjct: 67  EVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRL 126

Query: 158 ----------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVE 207
                      +MG  AE  ++PA  + P+P S+D   +A +   G TA   L+    V 
Sbjct: 127 FRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVR 186

Query: 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
           PG TV +    GGVGS   Q A A GA  +I      EK A+AK+ G  H
Sbjct: 187 PGETVAV-IGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH 235

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 44/240 (18%)

Query: 57  TKAAAETRTRTNMVKAIRVYEHGDPE-VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYY 115
           T              AIR   +GDP   ++ EDV + E G GE+ V   A G+N+ +V+ 
Sbjct: 2   TLPPLGVVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWA 61

Query: 116 RKGVYKP-----------AKMPF-TPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG----- 157
             G  +P              P+   G +A G V AVG G+    VGD ++ +       
Sbjct: 62  ALG--EPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGN 119

Query: 158 ---GAM------------------GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA 196
               A                   GS+A+  ++ A +++P P  +    AA+ ML G TA
Sbjct: 120 DPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATA 179

Query: 197 --QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254
                      V+PG  VLI  A+GG+GS+  Q A A GA  +  VS++EKA   +  G 
Sbjct: 180 YRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGA 239

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 78.0 bits (193), Expect = 9e-17
 Identities = 65/220 (29%), Positives = 92/220 (41%), Gaps = 48/220 (21%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV--YYRKGVYKPAKMPFT 128
           KA+ +   GD   L++ED+   EPG GE+ V+ KA G+   D+  Y   G Y P   P  
Sbjct: 2   KALVLTGPGD---LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYHP---PLV 55

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIA-------------------------YAGGAM-GS 162
            G E  G V  VG G+    VGD +A                         Y G    G+
Sbjct: 56  LGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGA 115

Query: 163 YAEEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPGHTVLIQAA 217
           +AE   +PA  ++ +P  +D   AA     ++ L  +       R   +  G TV++   
Sbjct: 116 FAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAV-------RLAGITLGDTVVV-IG 167

Query: 218 AGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
           AG +G L  QW   LGA  VI      EK A A++ G   
Sbjct: 168 AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADD 207

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 75.3 bits (186), Expect = 9e-16
 Identities = 68/237 (28%), Positives = 95/237 (40%), Gaps = 57/237 (24%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           ++A  ++E G P  +  E+VE+ +PG GE+ VR  A GL   D++   G   PA +P   
Sbjct: 1   MRAAVLHEVGKPLEI--EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDL-PAPLPAVL 57

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-----IIAYAG--------------------------- 157
           G E  G V  VGPG+TG   GD      I   G                           
Sbjct: 58  GHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDG 117

Query: 158 -----------GAM---GSYAEEQILPANKVVPVPSSIDPVIAASI---MLKGMTAQFLL 200
                      GAM   G++AE  ++P   VV +   I    AA +   +  G+ A  ++
Sbjct: 118 TRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGA--VV 175

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDDGCHH 256
               +V PG TV +    GGVG    Q A   GA+ I  V     K   A+  G  H
Sbjct: 176 NTA-RVRPGDTVAV-IGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATH 230

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 59/201 (29%), Positives = 88/201 (43%), Gaps = 33/201 (16%)

Query: 71  KAIRVYEHGDPEVL-KWEDVE---IGEPGEGEIRVRNKAIGLNFIDVYYRKG-------- 118
           KA +++ +G  + L   E+     I +P +  I+V   A  +N IDV  R G        
Sbjct: 2   KAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKV--HAASVNPIDVLMRSGYGRTLLNK 59

Query: 119 -------VYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGA-----MGSYAEE 166
                   Y   + P T G +  G VV +G G+    +GD +    GA      G++AE 
Sbjct: 60  KRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVW---GAVPPWSQGTHAEY 116

Query: 167 QILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHT----VLIQAAAGGVG 222
            ++P N+V   P ++    AAS+   G+TA   L     + P +     VLI   +GGVG
Sbjct: 117 VVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVG 176

Query: 223 SLLCQWANALGATVIGTVSTK 243
           +   Q   A GA V  T ST 
Sbjct: 177 TFAIQLLKAWGAHVTTTCSTD 197

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 62/217 (28%), Positives = 93/217 (42%), Gaps = 46/217 (21%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+     G+ EV   E+V + EPG  E+ ++  A G+   D++  +G +  A  P  PG
Sbjct: 2   KALVYEGPGELEV---EEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEF-GAAPPLVPG 57

Query: 131 MEAVGEVVAVGPGLTGRTVGD--------------------------IIAYAGGAMGSYA 164
            E  G VVAVG  +TG  VGD                          + A      G +A
Sbjct: 58  HEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFA 117

Query: 165 EEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG 219
           E  ++PA +V  +P ++    AA     S  + G+           ++PG +VL+   AG
Sbjct: 118 EYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGL------DLL-GIKPGDSVLV-FGAG 169

Query: 220 GVGSLLCQWANALGATVIGTVSTK--EKAAQAKDDGC 254
            +G LL Q     GA+ + TV+    EK   AK  G 
Sbjct: 170 PIGLLLAQLLKLNGASRV-TVAEPNEEKLELAKKLGA 205

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 68/224 (30%), Positives = 94/224 (41%), Gaps = 41/224 (18%)

Query: 72  AIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNF----------IDVYYRKGVY 120
           AIR    GDP + ++ E V + E G GE+ V   A G+N+          +  +     Y
Sbjct: 12  AIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKY 71

Query: 121 KPAKMPF-TPGMEAVGEVVAVGPGLTGRTVGDII-------------AYAGGAM------ 160
               +PF   G +A G V  VGPG+T   VGD +                G  M      
Sbjct: 72  GKLDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQR 131

Query: 161 --------GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA--QFLLRRCFKVEPGH 210
                   GS+AE  ++   +++P P  +    AA   L G TA  Q +      V+PG 
Sbjct: 132 IWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGD 191

Query: 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254
            VLI  AAGG+GS   Q A A G   +  VS+ EKA   +  G 
Sbjct: 192 NVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRSLGA 235

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 68/212 (32%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 75  VYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKPAKMPFTPGMEA 133
               GD  V +  +  +  PG GE+ +R KA GL   D+ YY  G   PA     PG E 
Sbjct: 4   AVFPGDRTV-ELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEP 62

Query: 134 VGEVVAVGPGLTGRTVGDI---------------------------IAYAGGAMGSYAEE 166
            G VVAVGPG+T   VGD                             AY     G +AE 
Sbjct: 63  AGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEY 122

Query: 167 QILPANKVVPVPSSIDPVIAASIMLKGM-TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL 225
            ++P   ++P+P  +      +++L G+ TA   LRR   V    TVL+   AG VG   
Sbjct: 123 MLVPEKTLIPLPDDL-SFADGALLLCGIGTAYHALRRV-GVSGRDTVLV-VGAGPVGLGA 179

Query: 226 CQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
              A ALGA  VIG   + E+   AK  G   
Sbjct: 180 LMLARALGAEDVIGVDPSPERLELAKALGADF 211

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 44/225 (19%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---------- 120
           KA  V E G P  L+  +++  +P   E+ V+  A G+   D++   G Y          
Sbjct: 2   KAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSL 59

Query: 121 --KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAY---------------------- 155
             +  K+P   G E VGEVVAVGP      VGD ++ Y                      
Sbjct: 60  DDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKG 119

Query: 156 ---AGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC-FKVEPGHT 211
                   G YAE  I+P ++ +  P  +DP +AA++   G+TA   +++    V     
Sbjct: 120 RALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPV 179

Query: 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDDGCH 255
           V+I   AGG+G +      ALG   I  V   E K   AK  G  
Sbjct: 180 VII--GAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD 222

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 31/211 (14%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           +A    E G+P  L+  +V   EP    + V  +A G+   D +  +G      +P  PG
Sbjct: 2   RAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPG 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAY-------------AG-------------GAMGSYA 164
            E  G VV VG  ++   VGD +               AG                GS+A
Sbjct: 60  HEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFA 119

Query: 165 EEQILPANKV--VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG 222
           E   +P   V  V +P  +D V AA +  +  TA   L    +V+PG  V +    GGVG
Sbjct: 120 EYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVH-GCGGVG 178

Query: 223 SLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
                 A+ALGA VI      +K   A++ G
Sbjct: 179 LSAVMIASALGARVIAVDIDDDKLELARELG 209

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 10/184 (5%)

Query: 75  VYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAV 134
           V +   P  L+  +V   +P   E  VR  AI LN  ++               PG +A 
Sbjct: 5   VVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGEL----KFAAERPDGAVPGWDAA 60

Query: 135 GEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM 194
           G V       +G  VG  +    GAMG++AE   +P   +  +P  +    AA++ + G+
Sbjct: 61  GVVERAAADGSGPAVGARVV-GLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGV 119

Query: 195 TAQFLLRRCFKVEP--GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252
           TA   LRR     P  G  VL+  A+GGVG    Q A   GA V+  V +  +A   ++ 
Sbjct: 120 TALRALRR---GGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLREL 176

Query: 253 GCHH 256
           G   
Sbjct: 177 GAAE 180

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 61/235 (25%), Positives = 79/235 (33%), Gaps = 52/235 (22%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
            +A    E G P  L+ E+V++  P  GE+ VR  A G+   D +   G   P   P   
Sbjct: 3   TRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVL 59

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-----IIAYAG----------------------GAM-- 160
           G E  G V AVG G+T    GD          G                      G M  
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPD 119

Query: 161 ------------------GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202
                              ++AE  ++    +V +        A  +     T    +  
Sbjct: 120 GTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVN 179

Query: 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST-KEKAAQAKDDGCHH 256
             KVEPG TV +    GGVG    Q A A GA  I  V    EK   AK  G  H
Sbjct: 180 TAKVEPGDTVAV-FGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH 233

Length = 366

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI 185
           P  PG  +VG VV VG G+TG   GD +       G +AE  ++PAN +VP+P  + P  
Sbjct: 21  PLPPGYSSVGRVVEVGSGVTGFKPGDRVF----CFGPHAERVVVPANLLVPLPDGLPPER 76

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKE 244
           AA   L   TA   +R   +   G  V +    G VG L  Q A A GA  V+G      
Sbjct: 77  AALTAL-AATALNGVRDA-EPRLGERVAV-VGLGLVGLLAAQLAKAAGAREVVGVDPDAA 133

Query: 245 KAAQAKDDGC 254
           +   A+  G 
Sbjct: 134 RRELAEALGP 143

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 54/211 (25%), Positives = 78/211 (36%), Gaps = 42/211 (19%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG 146
            +V + +   G + VR +  G+   DV+   G      +P   G E VG VVA+G G+T 
Sbjct: 16  REVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTT 75

Query: 147 R------TVGDIIAYAGGA---------------------------------MGSYAEEQ 167
                   VGD + ++ GA                                  G YAE  
Sbjct: 76  DVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHI 135

Query: 168 ILPAN-KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC 226
            LP    +V VP ++   +AA       T    L R   V  G TV++Q  AG +G    
Sbjct: 136 YLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQ-GAGPLGLYAV 194

Query: 227 QWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
             A   GA  VI    + E+   A++ G   
Sbjct: 195 AAAKLAGARRVIVIDGSPERLELAREFGADA 225

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYY----RKGVYKPAKMPFTPGMEAVGEVVAVGP 142
           E+     PG G++ VR +  G+   D+      R     PA+ P  PG E  G VVA+GP
Sbjct: 10  EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAE-PGGPGHEGWGRVVALGP 68

Query: 143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM-TAQFLLR 201
           G+ G  VGD +A   G  G++AE  +  A+  VP+PS +D     +   + +  A  + R
Sbjct: 69  GVRGLAVGDRVAGLSG--GAFAEYDLADADHAVPLPSLLD---GQAFPGEPLGCALNVFR 123

Query: 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIG 238
           R   +  G TV +   AG +G L  Q A A GA  VI 
Sbjct: 124 R-GWIRAGKTVAV-IGAGFIGLLFLQLAAAAGARRVIA 159

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 32/212 (15%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+     G P  ++  +V   EPG GE+ ++  A G+   D++  KG Y P + P   G
Sbjct: 2   KALVKTGPG-PGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLG 60

Query: 131 MEAVGEVVAVGPGLTGRTVGD------IIAYAG---------------------GAMGSY 163
            E  G +V VGP + G  VGD        +  G                      A G +
Sbjct: 61  HEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGF 120

Query: 164 AEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS 223
           AE  ++P   +  +P ++    AA      +    +  R   + PG TV++    G +G 
Sbjct: 121 AEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAERS-GIRPGDTVVV-FGPGPIGL 178

Query: 224 LLCQWANALGATVI--GTVSTKEKAAQAKDDG 253
           L  Q A   GATV+  GT   + +   AK+ G
Sbjct: 179 LAAQVAKLQGATVVVVGTEKDEVRLDVAKELG 210

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 35/144 (24%)

Query: 78  HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKPAKM--PFTPGMEAV 134
           H     L+ E+    EPG GE+RVR  A G+   D+ YY+ G +   ++  P   G E  
Sbjct: 4   HA-AGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVS 62

Query: 135 GEVVAVGPGLTGRTVGDIIA-------------------------YAGGAM------GSY 163
           G V AVGPG+TG   G  +A                         + G AM      G +
Sbjct: 63  GVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGF 122

Query: 164 AEEQILPANKVVPVPSSIDPVIAA 187
            E  ++ A++ VP+P  +    AA
Sbjct: 123 REYLVVDASQCVPLPDGLSLRRAA 146

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 60.6 bits (148), Expect = 9e-11
 Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY---YRKGVYKPAKMPF 127
           KA+ V E      L    + + +  EG++ +R     LN+ D        GV +    P 
Sbjct: 2   KALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTR--NYPH 59

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGS-----YAEEQILPANKVVPVPSSID 182
           TPG++A G VV+          GD +   G  +G      +AE   +PA+ VVP+P  + 
Sbjct: 60  TPGIDAAGTVVSSDDP--RFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLS 117

Query: 183 PVIAASIMLKGMTA----QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIG 238
              A  +   G TA      L       E G  VL+  A GGVGS+       LG TV+ 
Sbjct: 118 LREAMILGTAGFTAALSVHRLEDNGQTPEDG-PVLVTGATGGVGSIAVAILAKLGYTVVA 176

Query: 239 TVSTKEKAAQAKDDG 253
               +E+A   K  G
Sbjct: 177 LTGKEEQADYLKSLG 191

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 60/192 (31%), Positives = 82/192 (42%), Gaps = 43/192 (22%)

Query: 81  PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYY----RKGVYKPAKMPFTPGMEAVGE 136
           P  L+ E+  I EPG GE+ VR +A+G+   DV+Y    R G +   K P   G E+ G 
Sbjct: 7   PGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFV-VKEPMVLGHESAGT 65

Query: 137 VVAVGPGLTGRTVGDIIAYAGGA---------MGSY------------------AEEQIL 169
           VVAVG G+T   VGD +A   G           G Y                        
Sbjct: 66  VVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNH 125

Query: 170 PANKVVPVPSSIDPVIAASIMLK----GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL 225
           PA+    +P ++     A  +++    G+ A    RR   V PG TVL+   AG +G L 
Sbjct: 126 PADFCHKLPDNVSLEEGA--LVEPLSVGVHA---CRRA-GVRPGDTVLV-FGAGPIGLLT 178

Query: 226 CQWANALGATVI 237
              A A GAT +
Sbjct: 179 AAVAKAFGATKV 190

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 63/244 (25%), Positives = 89/244 (36%), Gaps = 62/244 (25%)

Query: 70  VKAIRVYEHG------DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA 123
           ++A  + E G      D   L  E+VE+  PG GE+ V+  A GL   D+    G  +P 
Sbjct: 1   MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGD-RPR 59

Query: 124 KMPFTPGMEAVGEVVAVGPGLTGRTVGDII------------------------AYAGGA 159
            +P   G EA G VV VG G+T   VGD +                          A   
Sbjct: 60  PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANG 119

Query: 160 MG-----------------------SYAEEQILPANKVVPVPSSIDPVIAASI---MLKG 193
            G                       ++AE  ++    VV +   +   IAA     +L G
Sbjct: 120 AGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 194 MTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDD 252
           + A         V PG +V +    GGVG      A A GA+ +  V   E K A A++ 
Sbjct: 180 VGAVV---NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL 235

Query: 253 GCHH 256
           G   
Sbjct: 236 GATA 239

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 48/223 (21%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  ++   D  +   E+V + EPG GE+ V+ +A G+   DV   +G +   K P   G
Sbjct: 2   KAAVLHGPNDVRL---EEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILG 58

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA------------------------YAGGAM--GSYA 164
            E  GE+V VG G+TG  VGD +                            G +  G +A
Sbjct: 59  HEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFA 118

Query: 165 EEQILPANKVV-----PVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPGHTVLI 214
           E   +PA  V       +P ++    AA     +  +         R+   ++PG TVL+
Sbjct: 119 EYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINA------QRKA-GIKPGDTVLV 171

Query: 215 QAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
              AG +G L    A A GA  VI +   + +   AK  G  +
Sbjct: 172 -IGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 81  PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGM-EAVGEVVA 139
               +  + E+    +GE+      +    +D Y R   Y          +   V +V+ 
Sbjct: 18  ESDFELVEEELPPLKDGEVLCEALFLS---VDPYMR--PYSKRLNEGDTMIGTQVAKVI- 71

Query: 140 VGPGLTGRT----VGDII-AYAGGAMGSYAEEQILPANKVVPV--PSSIDPVIAASIM-L 191
                  +     VG I+ A  G    + ++ +  P    +P   P  + P +A  ++ +
Sbjct: 72  -----ESKNSKFPVGTIVVASFGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGM 126

Query: 192 KGMTAQF-LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250
            G+TA F LL  C K + G TV++  AAG VGSL+ Q A   G  VIG   + +K A  K
Sbjct: 127 PGLTAYFGLLEIC-KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK 185

Query: 251 DDG 253
           + G
Sbjct: 186 ELG 188

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 61/216 (28%), Positives = 85/216 (39%), Gaps = 39/216 (18%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           +KA+       P  L+  D+    PG GE+ VR K +G+   D++   G    A  P   
Sbjct: 1   MKALVC---EKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRIL 57

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIA----------YA---G----------------GAM 160
           G E  GEVV VG G+ G  VGD +           YA   G                G  
Sbjct: 58  GHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGF 117

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG 220
             Y    ++PA   + VP  +    AA +    + A  + R    V  G TVL+   AG 
Sbjct: 118 AEYI---VVPA-DALLVPEGLSLDQAALVEPLAIGAHAVRRA--GVTAGDTVLVV-GAGP 170

Query: 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +G  + Q A A GA VI      E+   A++ G   
Sbjct: 171 IGLGVIQVAKARGARVIVVDIDDERLEFARELGADD 206

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/74 (33%), Positives = 36/74 (48%)

Query: 78  HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEV 137
            G  +  + E++E+ +P  GE+ V+  A GL   D +   G     + P   G E  G V
Sbjct: 8   WGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHEGAGVV 67

Query: 138 VAVGPGLTGRTVGD 151
             VGPG+TG   GD
Sbjct: 68  TKVGPGVTGVKPGD 81

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 25/199 (12%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY---YRKGVYKPAKMPF 127
           KA+ V +       + E +++ +  EG++ ++     LN+ D      + GV +    P 
Sbjct: 1   KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVR--SYPM 58

Query: 128 TPGMEAVGEVVA-----VGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVP 178
            PG++A G VV+        G    +TG  +G  +++ GG    Y++   +PA+ +VP+P
Sbjct: 59  IPGIDAAGTVVSSEDPRFREGDEVIVTGYGLG--VSHDGG----YSQYARVPADWLVPLP 112

Query: 179 SSIDPVIAASIMLKGMTA----QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
             +    A ++   G TA      L R     E G  VL+  A GGVGSL     + LG 
Sbjct: 113 EGLSLREAMALGTAGFTAALSVMALERNGLTPEDG-PVLVTGATGGVGSLAVAILSKLGY 171

Query: 235 TVIGTVSTKEKAAQAKDDG 253
            V+ +    E+    K+ G
Sbjct: 172 EVVASTGKAEEEDYLKELG 190

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 36/155 (23%)

Query: 130 GMEAVGEVVAVGPGLTGRTVGD--IIAY------------------------AG----GA 159
           G E +G V  VGPG+T   VGD   IA+                        AG    G 
Sbjct: 58  GHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGG 117

Query: 160 MGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG 219
           M   AE+ I+ A+  V VP  +DP  A+SI   G+T    ++    ++PG  + I   AG
Sbjct: 118 M---AEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVS-GIKPGQWIAIY-GAG 172

Query: 220 GVGSLLCQWA-NALGATVIGTVSTKEKAAQAKDDG 253
           G+G+L  Q+A N   A VI      +K A AK+ G
Sbjct: 173 GLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG 207

Length = 338

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID---VYYRKGVYKPAKMPF 127
           KA+ + +       +  +++  +  EG++ V      LN+ D   +  + G+ +    P 
Sbjct: 2   KALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVR--TFPL 59

Query: 128 TPGMEAVGEVVAVG-----PG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVP 178
            PG++  G VV        PG    LTG  VG+   + GG    YA+   + A+ +VP+P
Sbjct: 60  VPGIDLAGTVVESSSPRFKPGDRVVLTGWGVGE--RHWGG----YAQRARVKADWLVPLP 113

Query: 179 SSIDPVIAASIMLKGMTA----QFLLRRCFKVEPGH-TVLIQAAAGGVGSLLCQWANALG 233
             +    A +I   G TA      L      V PG   VL+  AAGGVGS+       LG
Sbjct: 114 EGLSARQAMAIGTAGFTAMLCVMALEDH--GVTPGDGPVLVTGAAGGVGSVAVALLARLG 171

Query: 234 ATVI 237
             V+
Sbjct: 172 YEVV 175

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 53/234 (22%), Positives = 80/234 (34%), Gaps = 52/234 (22%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  ++E G P  L  E++E+  P  GE+R++  A G+   D++   G   P  +P   G
Sbjct: 2   KAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL-PTPLPVILG 58

Query: 131 MEAVGEVVAVGPGLTGRTVGD-----IIAYAG----------------------GAM--- 160
            E  G V ++GPG+T    GD          G                      G M   
Sbjct: 59  HEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDG 118

Query: 161 -----------------GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203
                             ++AE  ++    +  +           I     T        
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178

Query: 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
            KV PG T  +    GGVG  +     A GA+ +I     K+K  +AK  G   
Sbjct: 179 AKVTPGSTCAV-FGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE 231

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 56/227 (24%), Positives = 86/227 (37%), Gaps = 44/227 (19%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           V+ +     G P  L  E + + +PG GE+ V  +A G+   D++YR+G     + PF  
Sbjct: 2   VRGVIARSKGAPVEL--ETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLL 58

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGA------------------------------ 159
           G EA G V AVG G+T    GD +     A                              
Sbjct: 59  GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118

Query: 160 ---------MGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGH 210
                    +G++AE+ ++ A +   V  + DP  A  +    M           V+ G 
Sbjct: 119 GTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGD 178

Query: 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDDGCHH 256
           +V +    GGVG      A   GA+ I  V   + K   A++ G  H
Sbjct: 179 SVAV-IGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH 224

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
             A  V E G P     EDVE+ +P   E+ VR  A G+   D+  R G   P  +P   
Sbjct: 3   TTAAVVREPGGP--FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGL-PTPLPAVL 59

Query: 130 GMEAVGEVVAVGPGLTGRTVGD 151
           G E  G V AVG  +TG   GD
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGD 81

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 58/216 (26%), Positives = 81/216 (37%), Gaps = 37/216 (17%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKPAKMPFTP 129
           KA  VY  G    ++ E+     PG G++ +R  A G+   D+  YR G           
Sbjct: 2   KAAVVYVGGG--DVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIIL 59

Query: 130 GMEAVGEVVAVG--------------PGLTGRT----------VGDIIAYAGGAM----- 160
           G E VGEVV VG              P +              + +   + G A      
Sbjct: 60  GHEFVGEVVEVGVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGI 119

Query: 161 -GSYAEEQILPA-NKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAA 218
            G +AE   +PA   +  +P  ID   AA              R   V PG TV++   A
Sbjct: 120 DGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAA-VRPGGTVVV-VGA 177

Query: 219 GGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDG 253
           G +G L    A  LGA+ VI    + E+   AK+ G
Sbjct: 178 GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213

Length = 350

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 53/229 (23%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGL------------NFIDVYYRKG 118
           KA R +   D   ++ E+V       GE++++    G+             FI       
Sbjct: 2   KAARYHGRKD---IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTE-GHP 57

Query: 119 VYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD---IIAY-------------------- 155
                  P T G E  G VV VG G+TG  VGD   +                       
Sbjct: 58  HLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSL 117

Query: 156 ----AGGAMGSYAEEQILPANKVVPVPSSIDPVIAASI--MLKGMTAQFLLRRCFKVEPG 209
                GG  G +AE  ++PA  V  +P ++    AA +  +     A   +RR    +PG
Sbjct: 118 GFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHA---VRRS-GFKPG 173

Query: 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS--TKEKAAQAKDDGCHH 256
            T L+   AG +G L      A GA+ I  VS  ++ +   A++ G   
Sbjct: 174 DTALV-LGAGPIGLLTILALKAAGASKI-IVSEPSEARRELAEELGATI 220

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E G P  L  E+VE+  P  GE+R++  A G+   D Y   G       P   G
Sbjct: 4   KAAVAWEAGKP--LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILG 61

Query: 131 MEAVGEVVAVGPGLTGRTVGD 151
            E  G V +VG G+T    GD
Sbjct: 62  HEGAGIVESVGEGVTSVKPGD 82

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E G P  L  E++E+  P   E+R++  A  +   D+   +G +K    P   G
Sbjct: 4   KAAVAWEAGKP--LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEG-FKATLFPVILG 60

Query: 131 MEAVGEVVAVGPGLTGRTVGDII 153
            E  G V +VG G+T    GD +
Sbjct: 61  HEGAGIVESVGEGVTNLKPGDKV 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 53/209 (25%), Positives = 77/209 (36%), Gaps = 61/209 (29%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY-YR-----KGVYKPAK 124
           KAI   + G    L   +V + +PG GE+ ++  A  +   DV+ Y      +   KP  
Sbjct: 2   KAIVKTKAGPGAELV--EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP-- 57

Query: 125 MPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG------------GAM------------ 160
            P   G E  GEVV VG G+T   VGD ++               G              
Sbjct: 58  -PLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVD 116

Query: 161 --GSYAEEQILPANKVVPVPSSIDPVIAASIM----------LKGMTAQFLLRRCFKVEP 208
             G +AE  ++P   +      I P I ASI           L G  +            
Sbjct: 117 TDGCFAEYVVVPEENLWKNDKDIPPEI-ASIQEPLGNAVHTVLAGDVS------------ 163

Query: 209 GHTVLIQAAAGGVGSLLCQWANALGATVI 237
           G +VLI    G +G +    A A GA+++
Sbjct: 164 GKSVLI-TGCGPIGLMAIAVAKAAGASLV 191

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 56/192 (29%), Positives = 77/192 (40%), Gaps = 31/192 (16%)

Query: 84  LKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG 143
           L++ +  +  PG GE+ VR +A G+   D++  +G     +   TPG E VGEV   G  
Sbjct: 15  LRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGAD 74

Query: 144 LTGRTVGDIIA--------------------------YAG-GAMGSYAEEQILPANKVVP 176
             G  VGD +                           Y G    G YAE   +PA     
Sbjct: 75  AGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYR 134

Query: 177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV 236
           +P+  D V  A ++  G+     L R   + PG   L     GG   L  Q A A GATV
Sbjct: 135 LPTGYDDVELAPLLCAGIIGYRALLRA-SLPPG-GRLGLYGFGGSAHLTAQVALAQGATV 192

Query: 237 IGTVSTKEKAAQ 248
              V T+  AA+
Sbjct: 193 --HVMTRGAAAR 202

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 37/134 (27%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-------KPAKMPFTPGMEAVGEVVA 139
            DV + EPG  ++ ++ K   +   DV+    +Y       K   +P   G E VGEVV 
Sbjct: 16  TDVPVPEPGPNDVLIKVKKTAICGTDVH----IYNWDEWAQKTIPVPMVVGHEFVGEVVE 71

Query: 140 VGPGLTGRTVGDIIAYAG--------------------------GAMGSYAEEQILPANK 173
           VG  +TG  VGD ++  G                             G++AE  ++PA  
Sbjct: 72  VGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFN 131

Query: 174 VVPVPSSIDPVIAA 187
           V  +P  I   +AA
Sbjct: 132 VWKIPDDIPDDLAA 145

Length = 341

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 35/180 (19%)

Query: 107 GLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA------------ 154
           G+   D++  K     +  P  PG E VGEVV VG  ++  TVGDI+             
Sbjct: 45  GICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECS 104

Query: 155 --------------------YAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLK 192
                               Y  G    G +A   ++    VV +P  + P  AA ++  
Sbjct: 105 PCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCA 164

Query: 193 GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252
           G+T    L      + G    I    GGVG +  + A A+G  V    S+ +K  +A + 
Sbjct: 165 GVTVYSPLSHFGLKQSGLRGGI-LGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH 223

Length = 357

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 32/198 (16%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKPAKMPFTPGMEAVGEVVAVGPG-- 143
             VEI E G G++ V+    G+   D+ YY  GV     +P   G E  G V+  G G  
Sbjct: 14  TRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAA 73

Query: 144 -LTGRTV------------------GDII---AYAGGAM-GSYAEEQILPANKVVPVPSS 180
              G+ V                  G I       G  M G +A   ++PA  +  V  +
Sbjct: 74  SWIGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEA 133

Query: 181 ID-----PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT 235
                  P+   S++   +T  +       ++ G  V++   AGGVG  + Q A A+GA 
Sbjct: 134 RLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIV-IGAGGVGGYMVQTAKAMGAA 192

Query: 236 VIGTVSTKEKAAQAKDDG 253
           V+      EK    K  G
Sbjct: 193 VVAIDIDPEKLEMMKGFG 210

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 134 VGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKG 193
            G +V   PG T  ++ D         G   E+ +      +P+  ++      ++ + G
Sbjct: 78  KGTIVLASPGWTSHSISD---------GKDLEKLLTEWPDTLPLSLAL-----GTVGMPG 123

Query: 194 MTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
           +TA F L     V+ G TV++ AAAG VGS++ Q A   G  V+G   + EK A  K  G
Sbjct: 124 LTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG 183

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 21/200 (10%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFTP 129
           +A+ V +  D   +  +++ + +  EG++ +R     +N+ D        K  K  PF P
Sbjct: 2   QALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIP 61

Query: 130 GMEAVGEVV-----AVGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSS 180
           G++  G VV        PG    +T   +G  +++ GG    Y+E   +PA  VVP+P  
Sbjct: 62  GIDLAGTVVESNDPRFKPGDEVIVTSYDLG--VSHHGG----YSEYARVPAEWVVPLPKG 115

Query: 181 IDPVIAASIMLKGMTA----QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV 236
           +    A  +   G TA      L       E G  VL+  A GGVGSL       LG  V
Sbjct: 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQG-PVLVTGATGGVGSLAVSILAKLGYEV 174

Query: 237 IGTVSTKEKAAQAKDDGCHH 256
           + +    + A   K  G   
Sbjct: 175 VASTGKADAADYLKKLGAKE 194

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 35/178 (19%)

Query: 87  EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKM-----------PFTPGMEAVG 135
            DV   EPG G++ V+  A G+   D++                          G E  G
Sbjct: 14  RDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCG 73

Query: 136 EVVAVGPG-----------------LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVP 178
           EVV  GPG                 L G+     I  +  A G YAE  +L    ++ VP
Sbjct: 74  EVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVP 133

Query: 179 SSIDPVIAASI--MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
             +    AA    +  G+ A   +RR  ++ PG   L+    G +G  +     A G 
Sbjct: 134 DGLSMEDAALTEPLAVGLHA---VRRA-RLTPGEVALV-IGCGPIGLAVIAALKARGV 186

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 34/176 (19%)

Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-------GVYKPAKMPFTPG--MEA--VGE 136
            +++   G G++ V+N  +     D Y R         +Y P   PF PG  +    V +
Sbjct: 29  TLKVPPGGSGDVLVKNLYLS---CDPYMRGRMKGHDDSLYLP---PFKPGEVITGYGVAK 82

Query: 137 VVAVG-PGLTGRTVGDIIAYAGGAMGSYAEEQILPAN----KVVP--VPSSIDPVIAASI 189
           VV  G P      VGD++    G  G + E  ++P      K+    VP S        +
Sbjct: 83  VVDSGNPDFK---VGDLVW---GFTG-WEEYSLIPRGQDLRKIDHTDVPLS---YYLGLL 132

Query: 190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
            + G+TA        K + G TV + AA+G VG L+ Q A   G  V+G+  + EK
Sbjct: 133 GMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEK 188

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 29/129 (22%)

Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVY---YRKGVYKPAKMPFTPGMEAVGEVVAVGPGL 144
           +V + EPG GE+ ++  A  +   DV+   + +      K P   G E  GEVV +GPG+
Sbjct: 15  EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGV 74

Query: 145 TGRTVGDIIAYAGGAM--------------------------GSYAEEQILPANKVVPVP 178
            G  VGD ++     +                          G +AE  ++PA  +   P
Sbjct: 75  EGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNP 134

Query: 179 SSIDPVIAA 187
            SI P  A 
Sbjct: 135 KSIPPEYAT 143

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           +A   +  G P  LK E+V++  P +GE+ VR  A G+   D +   G       P   G
Sbjct: 3   RAAVAWAAGQP--LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILG 60

Query: 131 MEAVGEVVAVGPGLTGRTVGD 151
            E  G V AVG G+T   VGD
Sbjct: 61  HEGAGIVEAVGEGVTSVKVGD 81

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 220 GVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
           GVG    Q A ALGA  VI    ++EK   AK+ G  H
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADH 38

Length = 131

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA+     GD  V +    +I +P +  ++V   A  +   D++  +G        F  G
Sbjct: 2   KAVVFKGPGDVRVEEVPIPQIQDPTDAIVKVT--AAAICGSDLHIYRGHIPSTP-GFVLG 58

Query: 131 MEAVGEVVAVGPGLTGRTVGDII 153
            E VGEVV VGP +    VGD +
Sbjct: 59  HEFVGEVVEVGPEVRTLKVGDRV 81

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 24/105 (22%)

Query: 78  HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-------YKPA--KMPFT 128
           HG P+  + E+V +  PG GEI V+ +A G+   D+    G         +P   K P  
Sbjct: 7   HG-PQDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMI 65

Query: 129 PGMEAVGEVVAVGPGLT--GRTVGD-IIAYAGGAMGSYAEEQILP 170
           PG E VG VV +G G    G  VGD +I+           EQI+P
Sbjct: 66  PGHEFVGRVVELGEGAEERGVKVGDRVIS-----------EQIVP 99

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E G P V+  E+VE+  P   E+R++     L   DVY+ +   +    P   G
Sbjct: 4   KAAVAWEAGKPLVI--EEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILG 61

Query: 131 MEAVGEVVAVGPGLTGRTVGD 151
            EA G V +VG G+T    GD
Sbjct: 62  HEAAGIVESVGEGVTDLKPGD 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           +KA+ +    D  V   ED+   EP  GE  VR    G+   D+   KG Y P   P  P
Sbjct: 1   MKALVLDGGLDLRV---EDLPKPEPPPGEALVRVLLAGICNTDLEIYKG-YYP--FPGVP 54

Query: 130 GMEAVGEVVAVGPG-LTG-RTVGDIIAYAG 157
           G E VG V       L G R VG+I    G
Sbjct: 55  GHEFVGIVEEGPEAELVGKRVVGEINIACG 84

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 14/131 (10%)

Query: 126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG--------GAMGSYAEEQILPANKVVPV 177
           P  PG E+VG VV  GP  TG   GD +   G        G  G  ++  + PA++V  +
Sbjct: 59  PLVPGYESVGRVVEAGPD-TGFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRL 117

Query: 178 PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVI 237
             ++ P    +++    TA+  +           ++     G +G LL +   A G +  
Sbjct: 118 DPALGP--QGALLALAATARHAVAGAEVKVLPDLIVGH---GTLGRLLARLTKAAGGSPP 172

Query: 238 GTVSTKEKAAQ 248
               T  +   
Sbjct: 173 AVWETNPRRRD 183

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 77  EHGDPEVLKWEDVEIGEP---GEGEIRVR--------------NKAIGLNFIDVYYRKGV 119
           ++G+P    +   E   P    EG++ VR              N+  G +++        
Sbjct: 14  KNGNPVAENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYL------AP 67

Query: 120 YKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPV-P 178
           ++ ++      ++  G  V          VGDI+        +YA   +L  + +  V P
Sbjct: 68  WQLSQ-----VLDGGGVGVVEESKHQKFAVGDIVTSFNWPWQTYA---VLDGSSLEKVDP 119

Query: 179 SSID---PVIAASIMLKGMTAQFLLRRCFKVEPG--HTVLIQAAAGGVGSLLCQWANALG 233
             +D        ++ L G+TA   ++    + PG   T+++  AAG  GSL  Q    LG
Sbjct: 120 QLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLG 179

Query: 234 AT-VIGTVSTKEK 245
            + V+G   + EK
Sbjct: 180 CSRVVGICGSDEK 192

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/67 (28%), Positives = 25/67 (37%)

Query: 85  KWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL 144
            W +  I   G  +  VR  A+     DV+   G     +     G EAVG V  VG  +
Sbjct: 13  GWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEV 72

Query: 145 TGRTVGD 151
                GD
Sbjct: 73  KDFKPGD 79

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 95  GEGEIRVRNKAIGLNFIDV----YYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL-TGRTV 149
            + EI V+  A  LN +D+     Y        K     G +  G +V VG  + +   V
Sbjct: 27  KDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEK---GLGRDYSGVIVKVGSNVASEWKV 83

Query: 150 GD----IIAYAGGAMGSYAEEQILPANK----VVPVPSSIDPVIAASIMLKGMTA-QFLL 200
           GD    I  +  G  G+ ++  ++   K    +   P +I    AA+  L   TA Q L 
Sbjct: 84  GDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILE 143

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWA-NALGA-TVIGTVSTK 243
               K+ P   VL+   +  VG    Q A N     TV+GT S++
Sbjct: 144 DLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSR 188

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 42/148 (28%)

Query: 130 GMEAVGEVVAVGPGLTGRT------VGDIIAYA--------------------------- 156
           G E VGEVVA+  G T         +G  + ++                           
Sbjct: 3   GHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGH 62

Query: 157 ------GGAMGSYAEEQILPAN-KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPG 209
                     G YAE   LPA   +VPVP  +   +AA       T    L     ++ G
Sbjct: 63  EALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLK-G 121

Query: 210 HTVLIQAAAGGVGSLLCQWANALGATVI 237
             VL+   AG +G      A A GA  +
Sbjct: 122 RRVLV-VGAGMLGLTAAAAAAAAGAARV 148

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 81  PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAV 140
           P  L  E+  I +P  GE+RV+ K  G+   D +  +G    AK P   G E  G + AV
Sbjct: 9   PNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAV 68

Query: 141 GPGLTGRTVGDIIA 154
           G G+    +G+ +A
Sbjct: 69  GEGVDAARIGERVA 82

Length = 339

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 24/180 (13%)

Query: 80  DPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYR------KGVYKPAKMPFTPG-- 130
           D EV     +E+  P G G   V+N  +     D Y R         Y P   PF PG  
Sbjct: 26  DMEVKLGNKIELKAPKGSGAFLVKNLYLS---CDPYMRGRMRDFHDSYLP---PFVPGQR 79

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIM 190
           +E  G    V         GD+I+   G  G + E  ++ ++        +   I  S  
Sbjct: 80  IEGFGVSKVVDSDDPNFKPGDLIS---GITG-WEEYSLIRSSDNQLRKIQLQDDIPLSYH 135

Query: 191 L-----KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           L      G TA          + G +V + AA+G VG L+ Q A   G  V+G+  + +K
Sbjct: 136 LGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQK 195

Length = 348

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.98
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.97
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.97
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.97
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
PTZ00354	334	alcohol dehydrogenase; Provisional	99.97
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.97
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.97
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.97
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.97
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.97
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.97
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.96
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.96
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.96
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.96
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.96
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.96
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.96
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.96
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.96
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.96
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.95
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.95
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.95
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.95
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.95
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.95
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.95
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.95
PLN02702	364	L-idonate 5-dehydrogenase	99.95
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.95
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.95
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.95
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.94
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.94
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.94
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.94
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.94
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.93
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.92
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.92
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.91
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.84
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.8
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.78
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.77
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.47
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.19
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.15
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.06
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.98
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.72
PLN02494	477	adenosylhomocysteinase	96.59
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.45
PRK08324	681	short chain dehydrogenase; Validated	96.39
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.26
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.15
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.15
PLN02780	320	ketoreductase/ oxidoreductase	96.03
PRK05866	293	short chain dehydrogenase; Provisional	96.0
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.96
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.92
PRK05854	313	short chain dehydrogenase; Provisional	95.9
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.9
PLN03209	576	translocon at the inner envelope of chloroplast su	95.9
PRK07831	262	short chain dehydrogenase; Provisional	95.89
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.81
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.79
PRK04148	134	hypothetical protein; Provisional	95.75
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.73
PRK06196	315	oxidoreductase; Provisional	95.67
PRK06841	255	short chain dehydrogenase; Provisional	95.66
PRK06197	306	short chain dehydrogenase; Provisional	95.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.5
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	95.19
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	95.19
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.18
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.14
PLN02253	280	xanthoxin dehydrogenase	95.13
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.11
KOG1208	314	consensus Dehydrogenases with different specificit	95.03
KOG1252	362	consensus Cystathionine beta-synthase and related	94.9
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	94.63
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.62
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.57
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	94.48
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.4
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.39
PRK06720	169	hypothetical protein; Provisional	94.38
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.38
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	94.37
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.35
PRK12367	245	short chain dehydrogenase; Provisional	94.33
PRK06484	520	short chain dehydrogenase; Validated	94.27
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.23
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.02
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.0
PLN02686	367	cinnamoyl-CoA reductase	93.86
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.86
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.82
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.78
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.54
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	93.5
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	93.38
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	93.32
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.27
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.27
PLN03013	429	cysteine synthase	93.25
PLN02565	322	cysteine synthase	93.15
PRK06128	300	oxidoreductase; Provisional	93.1
PRK07201	657	short chain dehydrogenase; Provisional	93.09
PRK07985	294	oxidoreductase; Provisional	93.01
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	92.96
PRK05855	582	short chain dehydrogenase; Validated	92.94
PRK12548	289	shikimate 5-dehydrogenase; Provisional	92.92
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.62
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.62
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.52
PRK06701	290	short chain dehydrogenase; Provisional	92.38
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	92.31
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	92.08
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.07
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.06
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.03
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.88
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.86
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.77
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.56
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	91.46
PRK11761	296	cysM cysteine synthase B; Provisional	91.36
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	91.3
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	91.25
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	91.23
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	91.22
PRK07574	385	formate dehydrogenase; Provisional	91.07
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	91.04
PLN02427	386	UDP-apiose/xylose synthase	91.04
PRK13403	335	ketol-acid reductoisomerase; Provisional	90.8
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	90.74
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.6
PRK10669	558	putative cation:proton antiport protein; Provision	90.47
PLN03139	386	formate dehydrogenase; Provisional	90.24
PRK10717	330	cysteine synthase A; Provisional	90.17
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	90.15
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.13
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	90.07
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	90.06
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.94
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.93
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	89.91
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	89.88
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.82
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	89.76
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.65
PLN00011	323	cysteine synthase	89.63
PLN02572	442	UDP-sulfoquinovose synthase	89.61
TIGR01136	299	cysKM cysteine synthases. This model discriminates	89.61
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.58
PRK13940	414	glutamyl-tRNA reductase; Provisional	89.57
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	89.38
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	89.32
PRK13243	333	glyoxylate reductase; Reviewed	89.25
PRK14982	340	acyl-ACP reductase; Provisional	89.13
PRK08317	241	hypothetical protein; Provisional	89.12
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.97
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	88.89
PRK14030	445	glutamate dehydrogenase; Provisional	88.86
PRK14967	223	putative methyltransferase; Provisional	88.8
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	88.78
PLN02206	442	UDP-glucuronate decarboxylase	88.57
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	88.51
PLN02695	370	GDP-D-mannose-3',5'-epimerase	88.39
PLN02928	347	oxidoreductase family protein	88.36
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.13
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	88.05
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	88.04
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	87.94
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	87.84
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.66
PLN02166	436	dTDP-glucose 4,6-dehydratase	87.61
PLN02970	328	serine racemase	87.42
PRK14031	444	glutamate dehydrogenase; Provisional	87.4
PRK06110	322	hypothetical protein; Provisional	87.33
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	87.28
PLN02477	410	glutamate dehydrogenase	87.25
PLN02356	423	phosphateglycerate kinase	87.24
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.13
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	87.1
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	86.86
PRK08198	404	threonine dehydratase; Provisional	86.85
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	86.81
PRK12814	652	putative NADPH-dependent glutamate synthase small	86.8
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	86.8
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	86.8
PRK13984	604	putative oxidoreductase; Provisional	86.79
PRK07402	196	precorrin-6B methylase; Provisional	86.77
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	86.77
PRK06932	314	glycerate dehydrogenase; Provisional	86.68
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	86.59
PRK06487	317	glycerate dehydrogenase; Provisional	86.56
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	86.51
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	86.48
PRK07048	321	serine/threonine dehydratase; Validated	86.26
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.23
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	86.18
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	85.95
PRK06436	303	glycerate dehydrogenase; Provisional	85.86
PRK06381	319	threonine synthase; Validated	85.85
PLN00203	519	glutamyl-tRNA reductase	85.85
PRK12480	330	D-lactate dehydrogenase; Provisional	85.75
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	85.73
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	85.53
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	85.52
PRK11207	197	tellurite resistance protein TehB; Provisional	85.5
PLN02256	304	arogenate dehydrogenase	85.26
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	85.1
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	85.05
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	84.79
PRK06608	338	threonine dehydratase; Provisional	84.66
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	84.56
PF10686	71	DUF2493: Protein of unknown function (DUF2493); In	84.36
PTZ00414	100	10 kDa heat shock protein; Provisional	84.2
PRK08246	310	threonine dehydratase; Provisional	84.16
PRK08638	333	threonine dehydratase; Validated	84.15
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.14
PRK14968	188	putative methyltransferase; Provisional	84.07
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	84.02
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	83.74
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	83.59
PRK09414	445	glutamate dehydrogenase; Provisional	83.58
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	83.18
PRK12831	464	putative oxidoreductase; Provisional	83.13
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	83.04
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	82.94
PRK08328	231	hypothetical protein; Provisional	82.91
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	82.89
PRK00364	95	groES co-chaperonin GroES; Reviewed	82.77
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	82.75
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	82.71
PRK09496	453	trkA potassium transporter peripheral membrane com	82.53
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	82.47
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	82.45
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	82.41
PRK05479	330	ketol-acid reductoisomerase; Provisional	82.4
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.2
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	82.17
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.05
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	82.05
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	81.86
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	81.44
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	81.24
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	81.06
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	81.05
PRK06721	352	threonine synthase; Reviewed	80.8
PRK12831	464	putative oxidoreductase; Provisional	80.71
PRK02991	441	D-serine dehydratase; Provisional	80.67
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	80.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	80.46
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	80.19
PRK08132	547	FAD-dependent oxidoreductase; Provisional	80.14
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.09

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=6.2e-44  Score=310.66  Aligned_cols=185  Identities=38%  Similarity=0.597  Sum_probs=175.8

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ++|||+++.+++.|  +++++++.|+|+++||+|+|+|+|+|++|+|.+.|.++...+|+++|||.+|+|+++|++|++|
T Consensus         2 ~~mkA~~~~~~~~p--l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~   79 (339)
T COG1064           2 MTMKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGL   79 (339)
T ss_pred             cceEEEEEccCCCC--ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccC
Confidence            57999999999888  8899999999999999999999999999999999999998899999999999999999999999


Q ss_pred             CCCCEEEE-eC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          148 TVGDIIAY-AG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       148 ~~Gd~V~~-~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      ++||||.+ +.                          ..+|+|+||+++|+.+++++|+++++++||.+.+++.|.|.+|
T Consensus        80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al  159 (339)
T COG1064          80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL  159 (339)
T ss_pred             CCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh
Confidence            99999987 21                          1269999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +. .+++||++|+|.| .|++|.+++|+|+.+|++|++++++++|++++++||||+
T Consensus       160 k~-~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~  213 (339)
T COG1064         160 KK-ANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH  213 (339)
T ss_pred             hh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE
Confidence            77 7999999999999 589999999999999999999999999999999999985

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.4e-40  Score=293.88  Aligned_cols=187  Identities=48%  Similarity=0.664  Sum_probs=175.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++.++.+++|+.+++++.|.|.|++|||||||+++++|+.|++.+.|. .+..++|.++|.|++|+|+++|++|+.++
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            78999999999988999999999999999999999999999999999997 34456899999999999999999999999


Q ss_pred             CCCEEEEeC-C-CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHH
Q 036416          149 VGDIIAYAG-G-AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC  226 (256)
Q Consensus       149 ~Gd~V~~~~-~-~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai  226 (256)
                      +||||+... . .+|+|+||+.+|++.++++|+++++++||++++.++|||+++....++++|++|||+||+|++|++++
T Consensus        81 ~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~ai  160 (326)
T COG0604          81 VGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI  160 (326)
T ss_pred             CCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHH
Confidence            999999984 2 35999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          227 QWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       227 ~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+||.+|+.+++++.++++.++++++|||+
T Consensus       161 QlAk~~G~~~v~~~~s~~k~~~~~~lGAd~  190 (326)
T COG0604         161 QLAKALGATVVAVVSSSEKLELLKELGADH  190 (326)
T ss_pred             HHHHHcCCcEEEEecCHHHHHHHHhcCCCE
Confidence            999999988888888888888999999985

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=260.01  Aligned_cols=190  Identities=53%  Similarity=0.858  Sum_probs=182.5

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .|+..|-+++++.|+++.+++++.|.|+|.++|+.||..|+|+|+.|.+.+.|.+...+.|+++|.|++|+|+++|++|+
T Consensus         5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt   84 (336)
T KOG1197|consen    5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT   84 (336)
T ss_pred             CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence            34557999999999999999999999999999999999999999999999999996667899999999999999999999


Q ss_pred             ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416          146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL  225 (256)
Q Consensus       146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~a  225 (256)
                      ++++||||..+. ..|.|+|+..+|...+.++|+.+++++||++.+.++|||..+++..++++|++||||.|+|++|+++
T Consensus        85 drkvGDrVayl~-~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll  163 (336)
T KOG1197|consen   85 DRKVGDRVAYLN-PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLL  163 (336)
T ss_pred             ccccccEEEEec-cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHH
Confidence            999999999988 4799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          226 CQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       226 i~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++..|+.+|+++++++|.+.+|+.||+|
T Consensus       164 ~Ql~ra~~a~tI~~asTaeK~~~akenG~~h  194 (336)
T KOG1197|consen  164 CQLLRAVGAHTIATASTAEKHEIAKENGAEH  194 (336)
T ss_pred             HHHHHhcCcEEEEEeccHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999986

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=5.5e-38  Score=269.05  Aligned_cols=185  Identities=30%  Similarity=0.331  Sum_probs=173.8

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      +++++.++.+++.|  ++++++.+++|++||||||+.++|+|++|.+.++|..|.. +|.++|||++|+|++||++|+++
T Consensus         1 mk~~aAV~~~~~~P--l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~v   77 (366)
T COG1062           1 MKTRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSV   77 (366)
T ss_pred             CCceEeeeecCCCC--eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCcccc
Confidence            35789999988877  9999999999999999999999999999999999999988 99999999999999999999999


Q ss_pred             CCCCEEEEeCC---------------------------------------------CC--cceeeEEEecCCCeEECCCC
Q 036416          148 TVGDIIAYAGG---------------------------------------------AM--GSYAEEQILPANKVVPVPSS  180 (256)
Q Consensus       148 ~~Gd~V~~~~~---------------------------------------------~~--G~~a~~~~v~~~~~~~ip~~  180 (256)
                      +|||.|+....                                             ..  ++|+||.++++.++++++++
T Consensus        78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~  157 (366)
T COG1062          78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD  157 (366)
T ss_pred             CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCC
Confidence            99999985320                                             11  49999999999999999999


Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .+++.++.+.+...|.+.+..+.+++++|++|.|+| .|++|++++|-|+..|| +||+++.+++|++++++|||||
T Consensus       158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~  233 (366)
T COG1062         158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH  233 (366)
T ss_pred             CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce
Confidence            999999999999999999999999999999999999 89999999999999999 7999999999999999999986

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.2e-38  Score=265.10  Aligned_cols=191  Identities=25%  Similarity=0.344  Sum_probs=174.4

Q ss_pred             CCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416           64 RTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        64 ~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      ...|.+.++|.+..+++..++++.+++.|+++++||+|+|+|||||++|++.+.|.++...+|.++|||.+|+|+++|++
T Consensus         4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~   83 (360)
T KOG0023|consen    4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN   83 (360)
T ss_pred             ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence            34577799999999988888899999999999999999999999999999999999999899999999999999999999


Q ss_pred             CCccCCCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhh
Q 036416          144 LTGRTVGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASI  189 (256)
Q Consensus       144 v~~~~~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l  189 (256)
                      |++|++||||-+-.                                  ...|+|++|+++++..+++||++++.+.||.+
T Consensus        84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPl  163 (360)
T KOG0023|consen   84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPL  163 (360)
T ss_pred             cccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccch
Confidence            99999999995410                                  01366999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hhHHHHHhCCCCC
Q 036416          190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK-EKAAQAKDDGCHH  256 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~-~~~~~~~~~Ga~~  256 (256)
                      .++..|+|.+|.+ .++.||++|.|.|+ |++|.+++|+|+++|.+|+++++++ +|.+.++.||||+
T Consensus       164 LCaGITvYspLk~-~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~  229 (360)
T KOG0023|consen  164 LCAGITVYSPLKR-SGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV  229 (360)
T ss_pred             hhcceEEeehhHH-cCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence            9999999999976 58999999999995 7799999999999999999999987 6667778899984

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-37  Score=264.81  Aligned_cols=183  Identities=27%  Similarity=0.239  Sum_probs=164.8

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCC
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      .+|+|+++.+   +.++++++.|.|++ .|+||+|+++++|||++|+|++......   -+.|+++|||.+|+|+++|++
T Consensus         3 ~~~~A~vl~g---~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~   79 (354)
T KOG0024|consen    3 ADNLALVLRG---KGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDE   79 (354)
T ss_pred             cccceeEEEc---cCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccc
Confidence            4589999994   45599999999988 9999999999999999999999876544   347999999999999999999


Q ss_pred             CCccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHH
Q 036416          144 LTGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA  196 (256)
Q Consensus       144 v~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta  196 (256)
                      |+++++||||+.-+                           +.+|++++|++.+++.++|+||+++++++|.+. ++..+
T Consensus        80 Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~  158 (354)
T KOG0024|consen   80 VKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVG  158 (354)
T ss_pred             ccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chhhh
Confidence            99999999998642                           236999999999999999999999999998654 58899


Q ss_pred             HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |++.+. +++++|++|||+| +|++|+++...||.+|| +|++++..+.|++++|+|||+.
T Consensus       159 ~HAcr~-~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  159 VHACRR-AGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             hhhhhh-cCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            999854 7999999999999 59999999999999999 7999999999999999999974

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.2e-36  Score=254.78  Aligned_cols=187  Identities=29%  Similarity=0.339  Sum_probs=175.1

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ..++||.+..+++.|  |.++++.+++|+.+||+||+.++++|++|.+.+.|..+...+|.++|||++|+|+++|++|++
T Consensus         5 vI~CKAAV~w~a~~P--L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    5 VITCKAAVAWEAGKP--LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             ceEEeEeeeccCCCC--eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            456999999988887  999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             cCCCCEEEEeCC----------------------------------------------CC--cceeeEEEecCCCeEECC
Q 036416          147 RTVGDIIAYAGG----------------------------------------------AM--GSYAEEQILPANKVVPVP  178 (256)
Q Consensus       147 ~~~Gd~V~~~~~----------------------------------------------~~--G~~a~~~~v~~~~~~~ip  178 (256)
                      +++||+|+.+..                                              ..  .+|+||.+++...+++++
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId  162 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID  162 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence            999999985320                                              01  389999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +..+++.++.|.+...|+|.+..+.+++++|++|.|+| .|++|+++++-||+.|| +||++|-+++|.+.+|+|||+|
T Consensus       163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            99999999999999999999988999999999999999 79999999999999999 8999999999999999999986

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=5.3e-35  Score=264.05  Aligned_cols=189  Identities=24%  Similarity=0.279  Sum_probs=169.5

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      ..+.+||++++.+++.+  +.+++++.|.|+++||+|||.++|||++|++.+.|..+. ..+|.++|||++|+|+++|++
T Consensus         6 ~~~~~mka~~~~~~~~~--~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~   83 (381)
T PLN02740          6 GKVITCKAAVAWGPGEP--LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG   83 (381)
T ss_pred             ccceeeEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence            34567999999976543  778899999999999999999999999999999887542 347899999999999999999


Q ss_pred             CCccCCCCEEEEeCC--------------------------------------------------CCcceeeEEEecCCC
Q 036416          144 LTGRTVGDIIAYAGG--------------------------------------------------AMGSYAEEQILPANK  173 (256)
Q Consensus       144 v~~~~~Gd~V~~~~~--------------------------------------------------~~G~~a~~~~v~~~~  173 (256)
                      ++++++||||++...                                                  ..|+|+||+++|...
T Consensus        84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~  163 (381)
T PLN02740         84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC  163 (381)
T ss_pred             CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH
Confidence            999999999987421                                                  148999999999999


Q ss_pred             eEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhC
Q 036416          174 VVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       174 ~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~  252 (256)
                      ++++|+++++++++.+++.+.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++
T Consensus       164 ~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~  242 (381)
T PLN02740        164 VVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM  242 (381)
T ss_pred             eEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence            9999999999999999999999999887778999999999999 59999999999999999 699999999999999999


Q ss_pred             CCCC
Q 036416          253 GCHH  256 (256)
Q Consensus       253 Ga~~  256 (256)
                      |+++
T Consensus       243 Ga~~  246 (381)
T PLN02740        243 GITD  246 (381)
T ss_pred             CCcE
Confidence            9863

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=6.9e-35  Score=262.38  Aligned_cols=185  Identities=30%  Similarity=0.374  Sum_probs=168.6

Q ss_pred             eEEEEEcccCC------CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416           70 VKAIRVYEHGD------PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        70 ~~a~~~~~~~~------~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      |||+++.++|.      ++.+++++.|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            79999998876      478999999999999999999999999999999999887643 46899999999999999999


Q ss_pred             CCccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEE
Q 036416          144 LTGRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVP  176 (256)
Q Consensus       144 v~~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~  176 (256)
                      ++++++||||++...                                               ..|+|+||+.+|...+++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~  159 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK  159 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEE
Confidence            999999999986321                                               026899999999999999


Q ss_pred             CCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+++++++|+.+++.+.|||+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|
T Consensus       160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             CCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            9999999999999999999999987778899999999998 59999999999999999 699999999999999999997


Q ss_pred             C
Q 036416          256 H  256 (256)
Q Consensus       256 ~  256 (256)
                      +
T Consensus       239 ~  239 (371)
T cd08281         239 A  239 (371)
T ss_pred             e
Confidence            4

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.1e-34  Score=260.90  Aligned_cols=184  Identities=26%  Similarity=0.299  Sum_probs=167.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++...+.  .++++++|.|+|+++||+|||.++|+|++|++.+.|.++...+|.++|||++|+|+++|++++++++
T Consensus         2 ~~a~~~~~~~~--~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~   79 (368)
T TIGR02818         2 SRAAVAWAAGQ--PLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKV   79 (368)
T ss_pred             ceEEEEecCCC--CeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCC
Confidence            89999887654  4888999999999999999999999999999999987765567899999999999999999999999


Q ss_pred             CCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416          150 GDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSID  182 (256)
Q Consensus       150 Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~  182 (256)
                      ||||++...                                               ..|+|+||+++|...++++|++++
T Consensus        80 GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~  159 (368)
T TIGR02818        80 GDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP  159 (368)
T ss_pred             CCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCC
Confidence            999987421                                               026899999999999999999999


Q ss_pred             HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       160 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~  233 (368)
T TIGR02818       160 LEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD  233 (368)
T ss_pred             HHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence            9999999999999999988778999999999998 59999999999999999 7999999999999999999863

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=3.2e-34  Score=257.71  Aligned_cols=184  Identities=27%  Similarity=0.297  Sum_probs=168.2

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +|||+++..++.+  +++++++.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++++
T Consensus         2 ~~ka~~~~~~~~~--~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (369)
T cd08301           2 TCKAAVAWEAGKP--LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLK   79 (369)
T ss_pred             ccEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccc
Confidence            6999999876544  88899999999999999999999999999999998776556799999999999999999999999


Q ss_pred             CCCEEEEeCC------------------------------------------------CCcceeeEEEecCCCeEECCCC
Q 036416          149 VGDIIAYAGG------------------------------------------------AMGSYAEEQILPANKVVPVPSS  180 (256)
Q Consensus       149 ~Gd~V~~~~~------------------------------------------------~~G~~a~~~~v~~~~~~~ip~~  180 (256)
                      +||||++...                                                ..|+|+||++++...++++|++
T Consensus        80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            9999987521                                                1378999999999999999999


Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++++++.+++.+.|+|+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++++++|+++++++|++
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~  234 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT  234 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            999999999999999999887778999999999998 59999999999999999 799999999999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=4.4e-34  Score=253.33  Aligned_cols=182  Identities=29%  Similarity=0.337  Sum_probs=163.8

Q ss_pred             EEEcccCCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416           73 IRVYEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG  150 (256)
Q Consensus        73 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G  150 (256)
                      +.+..++.+  +.++++++|.|+|+++||+|||.++|+|++|++.+.|.++...+|.++|||++|+|+++|++++++++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            456666655  568999999999999999999999999999999999876544457899999999999999999999999


Q ss_pred             CEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          151 DIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       151 d~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      |+|++..                           ..+|+|+||+.+|...++++|+++++++++.+++.+.|||+++. .
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~-~  160 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALL-R  160 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHH-h
Confidence            9997521                           12489999999999999999999999999999999999999986 4


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++|++|||+|+ |++|++++|+|+.+|++|++++++++|+++++++|||+
T Consensus       161 ~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~  212 (329)
T TIGR02822       161 ASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS  212 (329)
T ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce
Confidence            78999999999995 99999999999999999999999999999999999974

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=3.1e-34  Score=256.92  Aligned_cols=184  Identities=29%  Similarity=0.419  Sum_probs=167.3

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||++++++++.+  +++++.|.|+|+++||+|||.++++|++|++.+.|.++. .+|.++|||++|+|+++|+++++++
T Consensus         1 ~mka~~~~~~~~~--~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~   77 (358)
T TIGR03451         1 TVRGVIARSKGAP--VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVA   77 (358)
T ss_pred             CcEEEEEccCCCC--CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccC
Confidence            5999999988765  788999999999999999999999999999999887543 3789999999999999999999999


Q ss_pred             CCCEEEEeC---------------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhh
Q 036416          149 VGDIIAYAG---------------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASI  189 (256)
Q Consensus       149 ~Gd~V~~~~---------------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l  189 (256)
                      +||+|++..                                       ...|+|+||+.+|...++++|+++++++++.+
T Consensus        78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l  157 (358)
T TIGR03451        78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLL  157 (358)
T ss_pred             CCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhh
Confidence            999998621                                       01489999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++.+.|+|.++.+.+++++|++|||+| +|++|++++|+|+.+|++ |++++.+++|+++++++|+|+
T Consensus       158 ~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~  224 (358)
T TIGR03451       158 GCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH  224 (358)
T ss_pred             cccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            999999998887778899999999998 599999999999999995 999999999999999999863

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=9.9e-34  Score=254.60  Aligned_cols=185  Identities=28%  Similarity=0.332  Sum_probs=167.6

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +||++++...+.  .+++++.|.|.|+++||+||+.++|+|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus         2 ~~~a~~~~~~~~--~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   79 (368)
T cd08300           2 TCKAAVAWEAGK--PLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVK   79 (368)
T ss_pred             cceEEEEecCCC--CcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCC
Confidence            489999886554  488899999999999999999999999999999998776556899999999999999999999999


Q ss_pred             CCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCC
Q 036416          149 VGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSI  181 (256)
Q Consensus       149 ~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~  181 (256)
                      +||+|++...                                               ..|+|+||+.++...++++|+++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence            9999987411                                               13689999999999999999999


Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++++.+++.+.|||+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~  234 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD  234 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999987778899999999998 59999999999999999 7999999999999999999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=9.2e-34  Score=254.20  Aligned_cols=186  Identities=21%  Similarity=0.283  Sum_probs=159.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++.+...+.++.+++.+++.|.|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++|+++++
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~v   90 (360)
T PLN02586         11 QKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKE   90 (360)
T ss_pred             hheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCccCC
Confidence            44444444445556888899999999999999999999999999999887654457899999999999999999999999


Q ss_pred             CCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHH
Q 036416          150 GDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT  195 (256)
Q Consensus       150 Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~t  195 (256)
                      ||+|++..                                  ..+|+|+||+++|.+.++++|+++++++++.+++.+.|
T Consensus        91 GdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t  170 (360)
T PLN02586         91 GDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGIT  170 (360)
T ss_pred             CCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHH
Confidence            99997421                                  01589999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCCCC
Q 036416          196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGCHH  256 (256)
Q Consensus       196 a~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga~~  256 (256)
                      +|+++.....+++|++|+|.| +|++|++++|+|+.+|++|++++.++++ .+.++++|+++
T Consensus       171 a~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~  231 (360)
T PLN02586        171 VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADS  231 (360)
T ss_pred             HHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcE
Confidence            999987766778999999988 6999999999999999999988877665 45668999863

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=2.9e-33  Score=248.41  Aligned_cols=182  Identities=32%  Similarity=0.381  Sum_probs=163.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++.+   ++.+++++++.|.|+++||+||+.++++|++|++.+.+.... ..+|.++|||++|+|+++|++|++++
T Consensus         1 mka~~~~~---~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   77 (339)
T cd08239           1 MRGAVFPG---DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFR   77 (339)
T ss_pred             CeEEEEec---CCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCC
Confidence            78999984   456999999999999999999999999999999988776432 23578999999999999999999999


Q ss_pred             CCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416          149 VGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR  201 (256)
Q Consensus       149 ~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  201 (256)
                      +||+|+....                           .+|+|+||+.+|...++++|+++++++++.+++++.|||+++.
T Consensus        78 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~  157 (339)
T cd08239          78 VGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALR  157 (339)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence            9999987531                           2589999999999999999999999999999999999999985


Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      . +++++|++|||+| +|++|++++|+|+.+|++ |++++.+++|+++++++|+++
T Consensus       158 ~-~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~  211 (339)
T cd08239         158 R-VGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF  211 (339)
T ss_pred             h-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            4 6889999999998 599999999999999998 999999999999999999863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=8.1e-33  Score=248.40  Aligned_cols=184  Identities=25%  Similarity=0.285  Sum_probs=167.0

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +||++++...+.  .++++++|.|.++++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++++
T Consensus         2 ~~ka~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08277           2 KCKAAVAWEAGK--PLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLK   78 (365)
T ss_pred             ccEEEEEccCCC--CcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCC
Confidence            489999987654  388899999999999999999999999999999988765 44789999999999999999999999


Q ss_pred             CCCEEEEeCC----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416          149 VGDIIAYAGG----------------------------------------------AMGSYAEEQILPANKVVPVPSSID  182 (256)
Q Consensus       149 ~Gd~V~~~~~----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~  182 (256)
                      +||+|++...                                              ..|+|+||+.++...++++|++++
T Consensus        79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~  158 (365)
T cd08277          79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP  158 (365)
T ss_pred             CCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence            9999987521                                              137899999999999999999999


Q ss_pred             HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++.+++++.|||+++...+++++|++|+|+| +|++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus       159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~  232 (365)
T cd08277         159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD  232 (365)
T ss_pred             HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc
Confidence            9999999999999999887778999999999998 69999999999999999 7999999999999999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.5e-32  Score=247.96  Aligned_cols=183  Identities=26%  Similarity=0.246  Sum_probs=162.9

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      .+||++++.+++  +.+++++.|.|.|+++||+|||.++|+|++|++.+.|..   .+|.++|||++|+|+++|++++++
T Consensus        11 ~~mka~~~~~~~--~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~   85 (378)
T PLN02827         11 ITCRAAVAWGAG--EALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEF   85 (378)
T ss_pred             ceeEEEEEecCC--CCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCccc
Confidence            459999998543  348889999999999999999999999999999887742   367899999999999999999999


Q ss_pred             CCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCC
Q 036416          148 TVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSS  180 (256)
Q Consensus       148 ~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~  180 (256)
                      ++||+|++...                                               ..|+|+||+.+|...++++|++
T Consensus        86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~  165 (378)
T PLN02827         86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL  165 (378)
T ss_pred             CCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCC
Confidence            99999987531                                               1279999999999999999999


Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++++.+.+.+.++|+++...+++++|++|||+| +|++|++++|+|+.+|+ .|++++.+++|.++++++|+++
T Consensus       166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~  241 (378)
T PLN02827        166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD  241 (378)
T ss_pred             CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            999999988888899998776777899999999998 59999999999999999 5888888899999999999863

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=5.8e-33  Score=232.37  Aligned_cols=193  Identities=29%  Similarity=0.432  Sum_probs=178.3

Q ss_pred             CCcccceEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416           64 RTRTNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        64 ~~~~~~~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG  141 (256)
                      ...+...|+++++.+|+| +.++++++++|+...++|+||..++.|||+|+..++|.+|. +++|.+-|.|++|+|+.+|
T Consensus        14 ~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vG   93 (354)
T KOG0025|consen   14 SQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVG   93 (354)
T ss_pred             cccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEec
Confidence            344555799999999988 66888999999998888999999999999999999999987 6789999999999999999


Q ss_pred             CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChH
Q 036416          142 PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV  221 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~v  221 (256)
                      +++++|++||+|+......|+|++|.+.+++.++++++.++++.||++....+|||..|.+.-++++||+|+-.||++++
T Consensus        94 s~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~V  173 (354)
T KOG0025|consen   94 SNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGV  173 (354)
T ss_pred             CCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHH
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEeCChhhH----HHHHhCCCCC
Q 036416          222 GSLLCQWANALGATVIGTVSTKEKA----AQAKDDGCHH  256 (256)
Q Consensus       222 G~~ai~la~~~ga~Vi~~~~~~~~~----~~~~~~Ga~~  256 (256)
                      |.+++|+|+++|.+-|-++++....    +.++.+||||
T Consensus       174 G~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~  212 (354)
T KOG0025|consen  174 GQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATE  212 (354)
T ss_pred             HHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCce
Confidence            9999999999999988888875544    4557899986

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.3e-32  Score=246.41  Aligned_cols=186  Identities=22%  Similarity=0.287  Sum_probs=160.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      .||+.+...+.+..+...+++.|.|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++++++++
T Consensus         5 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~v   84 (375)
T PLN02178          5 NKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKE   84 (375)
T ss_pred             ceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCC
Confidence            45666666666667888899999999999999999999999999999887644446899999999999999999999999


Q ss_pred             CCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHH
Q 036416          150 GDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT  195 (256)
Q Consensus       150 Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~t  195 (256)
                      ||||.+..                                  ..+|+|+||+.+|++.++++|+++++++++.+++.+.|
T Consensus        85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t  164 (375)
T PLN02178         85 GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGIT  164 (375)
T ss_pred             CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchH
Confidence            99997421                                  01589999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCCCC
Q 036416          196 AQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGCHH  256 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga~~  256 (256)
                      +|+++..... .++|++|+|.| +|++|++++|+|+.+|++|++++.++++ .++++++|+|+
T Consensus       165 a~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~  226 (375)
T PLN02178        165 VYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADS  226 (375)
T ss_pred             HHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcE
Confidence            9998866533 36899999998 5999999999999999999999877554 78889999974

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.9e-32  Score=241.95  Aligned_cols=185  Identities=31%  Similarity=0.500  Sum_probs=163.9

Q ss_pred             eEEEEEcccCCC---CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCC
Q 036416           70 VKAIRVYEHGDP---EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        70 ~~a~~~~~~~~~---~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      ||++++++++.|   +.+++.+.|.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            789999988776   57888899999999999999999999999999999887643 34689999999999999999999


Q ss_pred             c-cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe-cCCChHHH
Q 036416          146 G-RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ-AAAGGVGS  223 (256)
Q Consensus       146 ~-~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-ga~g~vG~  223 (256)
                      + +++||+|++....+|+|++|+.+|.+.++++|+++++++++++++.+.|||..+ ...+. ++++++|+ +|+|++|+
T Consensus        81 ~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~  158 (324)
T cd08291          81 AQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGR  158 (324)
T ss_pred             ccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHH
Confidence            6 999999998754458999999999999999999999999999999999998554 44455 56667666 77999999


Q ss_pred             HHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       224 ~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++|+|+.+|++|++++.+++|+++++++|+++
T Consensus       159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~  191 (324)
T cd08291         159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEY  191 (324)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcE
Confidence            999999999999999999999999999999874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.5e-32  Score=241.63  Aligned_cols=186  Identities=36%  Similarity=0.406  Sum_probs=170.5

Q ss_pred             EEEEEccc---CCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           71 KAIRVYEH---GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        71 ~a~~~~~~---~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ||+++..+   ++++.++..+.|.|+|+++||+||+.++++|+.|+.++.|..+...+|.++|+|++|+|+++|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57888887   778889999999999999999999999999999999888876555568899999999999999999999


Q ss_pred             CCCCEEEEeC--CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC-----CCEEEEecCCCh
Q 036416          148 TVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-----GHTVLIQAAAGG  220 (256)
Q Consensus       148 ~~Gd~V~~~~--~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~ga~g~  220 (256)
                      ++||+|+++.  ...|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...+++++     |++|||+|++|+
T Consensus        81 ~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~  160 (336)
T TIGR02817        81 KPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGG  160 (336)
T ss_pred             CCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcH
Confidence            9999999875  224899999999999999999999999999999999999999988888877     999999999999


Q ss_pred             HHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCCC
Q 036416          221 VGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       221 vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++++|+|+.+ |++|+++++++++.++++++|+|+
T Consensus       161 vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~  197 (336)
T TIGR02817       161 VGSILIQLARQLTGLTVIATASRPESQEWVLELGAHH  197 (336)
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCE
Confidence            999999999998 999999999999999999999863

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-32  Score=240.64  Aligned_cols=179  Identities=18%  Similarity=0.258  Sum_probs=153.9

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh-CCCC--CCCCCCCCCcccEEEEEEeCCCCC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-GVYK--PAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .++++++.   ++..+++++.+.| ++++||||||.++|||++|++++. |..+  ...+|.++|||++|+|+++  +++
T Consensus         4 ~~~~~~~~---~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          4 KTQSCVVA---GKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cceEEEEe---cCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            47899998   5556999999987 689999999999999999999875 4332  2347899999999999999  788


Q ss_pred             ccCCCCEEEEeC-------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416          146 GRTVGDIIAYAG-------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       146 ~~~~Gd~V~~~~-------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      +|++||||.+.+                               ..+|+|+||++++++.++++|+++++++++ +...+.
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~  156 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLA  156 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHH
Confidence            999999998631                               125999999999999999999999998655 456778


Q ss_pred             HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +||+++... ...+|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       157 ~a~~al~~~-~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~  217 (343)
T PRK09880        157 VAIHAAHQA-GDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK  217 (343)
T ss_pred             HHHHHHHhc-CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence            999998654 666899999999 59999999999999999 6999999999999999999974

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=8.1e-32  Score=244.15  Aligned_cols=180  Identities=23%  Similarity=0.235  Sum_probs=153.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCC-------CCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPG-------EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      ||++++.+++   .++++++|.|+|+       +|||||||.++|||++|++++.|..+. .+|.++|||++|+|+++|+
T Consensus         3 mka~v~~~~~---~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~   78 (393)
T TIGR02819         3 NRGVVYLGPG---KVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGR   78 (393)
T ss_pred             ceEEEEecCC---ceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcC
Confidence            8999998544   5889999999874       689999999999999999999886543 4689999999999999999


Q ss_pred             CCCccCCCCEEEEeC------------------------------------CCCcceeeEEEecCC--CeEECCCCCCH-
Q 036416          143 GLTGRTVGDIIAYAG------------------------------------GAMGSYAEEQILPAN--KVVPVPSSIDP-  183 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~-  183 (256)
                      +|+++++||||++..                                    ..+|+|+||+++|..  .++++|++++. 
T Consensus        79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~  158 (393)
T TIGR02819        79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQAL  158 (393)
T ss_pred             ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCccccc
Confidence            999999999997631                                    024899999999964  69999998653 


Q ss_pred             ---HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          184 ---VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       184 ---~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                         .+++.+...+.++|+++.. +++++|++|+|.| +|++|++++|+|+.+|++ |++++.+++|+++++++|++
T Consensus       159 ~~~~~~a~l~~~~~ta~~a~~~-~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~  232 (393)
T TIGR02819       159 EKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE  232 (393)
T ss_pred             ccccceeeeccHHHHHHHHHHh-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe
Confidence               3456677788999998854 6899999999977 699999999999999997 45556778899999999985

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=8.7e-32  Score=239.73  Aligned_cols=178  Identities=19%  Similarity=0.223  Sum_probs=151.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC----CCCCCCCCcccEEEEEEeCCCCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP----AKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .++++++   .|+++++++.+.|. +++||+|||+++|||++|++++.|....    ..+|.++|||++|+|+++|.+  
T Consensus         3 ~~~~~~~---~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           3 NQVYRLV---RPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             ccceEEe---ccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            4678887   45569999999995 9999999999999999999999987532    347999999999999998764  


Q ss_pred             ccCCCCEEEEeCC-----------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          146 GRTVGDIIAYAGG-----------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       146 ~~~~Gd~V~~~~~-----------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      .|++||||++.+.                       .+|+|+||+++|.+.++++|+++++++|+ +...+.++|+++..
T Consensus        77 ~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~~  155 (341)
T cd08237          77 TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAISR  155 (341)
T ss_pred             ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHHH
Confidence            7999999987431                       24899999999999999999999999877 44577888888754


Q ss_pred             H--cCCCCCCEEEEecCCChHHHHHHHHHHH-cC-CeEEEEeCChhhHHHHHhCCCC
Q 036416          203 C--FKVEPGHTVLIQAAAGGVGSLLCQWANA-LG-ATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~--~~~~~g~~VlI~ga~g~vG~~ai~la~~-~g-a~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .  +.+++|++|+|.| +|++|++++|+|+. .| ++|++++.+++|+++++++|++
T Consensus       156 ~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~  211 (341)
T cd08237         156 FEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET  211 (341)
T ss_pred             HhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence            3  3578999999999 59999999999986 55 5899999999999999887764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.8e-31  Score=239.10  Aligned_cols=185  Identities=25%  Similarity=0.325  Sum_probs=163.7

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      .++++++++++.+  +++++++.|+|+++||+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus         9 ~~~~~~~~~~~~~--~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~   86 (357)
T PLN02514          9 KTTGWAARDPSGH--LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_pred             eEEEEEEecCCCC--ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccccc
Confidence            3899999987754  88889999999999999999999999999999988765445789999999999999999999999


Q ss_pred             CCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416          149 VGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       149 ~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      +||+|++..                                  ..+|+|+||+.+|...++++|+++++++++.+++.+.
T Consensus        87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~  166 (357)
T PLN02514         87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGV  166 (357)
T ss_pred             CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHH
Confidence            999997421                                  1258999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCCCCC
Q 036416          195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDGCHH  256 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~Ga~~  256 (256)
                      |||+++......++|++|+|+| +|++|++++|+|+.+|++|++++.+++++..+ +++|+++
T Consensus       167 ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~  228 (357)
T PLN02514        167 TVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADD  228 (357)
T ss_pred             HHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcE
Confidence            9999987766678999999997 69999999999999999999999887776554 6799863

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.7e-31  Score=234.86  Aligned_cols=184  Identities=34%  Similarity=0.515  Sum_probs=167.1

Q ss_pred             eEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           70 VKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        70 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ||++++.+++.+ +.+++.++|.|.+.++||+|||.++++|+.|++.+.|.++ ....|.++|||++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999877665 4588999999999999999999999999999999888764 23468899999999999999999999


Q ss_pred             CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ++||+|+++.. .|+|++|+.++...++++|+++++++++.+++.+.++|+++.. +++++|++|||+|++|++|++++|
T Consensus        81 ~~Gd~V~~~~~-~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~  158 (324)
T cd08292          81 QVGQRVAVAPV-HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAM  158 (324)
T ss_pred             CCCCEEEeccC-CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHH
Confidence            99999998762 3899999999999999999999999999999999999998854 789999999999999999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+.+|+++++++.++++.++++++|++
T Consensus       159 ~a~~~G~~v~~~~~~~~~~~~~~~~g~~  186 (324)
T cd08292         159 LAAARGINVINLVRRDAGVAELRALGIG  186 (324)
T ss_pred             HHHHCCCeEEEEecCHHHHHHHHhcCCC
Confidence            9999999999999999999998888875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.7e-31  Score=238.95  Aligned_cols=180  Identities=24%  Similarity=0.264  Sum_probs=149.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++... .++ ++++++|.|+|+++||||||.++|||++|++.+.|.++.   ..+|.++|||++|+|+++|++ +.
T Consensus         1 mka~~~~~~-~~~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~   77 (355)
T cd08230           1 MKAIAVKPG-KPG-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SG   77 (355)
T ss_pred             CceeEecCC-CCC-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CC
Confidence            688888743 333 899999999999999999999999999999999987532   235789999999999999999 99


Q ss_pred             cCCCCEEEEeCC-----------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          147 RTVGDIIAYAGG-----------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       147 ~~~Gd~V~~~~~-----------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      |++||||++...                             .+|+|+||+++|.+.++++|++++ ++ +++..+..+++
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~  155 (355)
T cd08230          78 LSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVE  155 (355)
T ss_pred             CCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cc-eeecchHHHHH
Confidence            999999986421                             248899999999999999999999 43 33444444444


Q ss_pred             HHHHH------HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          198 FLLRR------CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       198 ~~l~~------~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .++..      ..++++|++|+|+| +|++|++++|+|+.+|++|+++++   +++|+++++++|++
T Consensus       156 ~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~  221 (355)
T cd08230         156 KAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT  221 (355)
T ss_pred             HHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence            33322      22367899999999 599999999999999999999987   68899999999986

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=3.2e-31  Score=233.91  Aligned_cols=187  Identities=44%  Similarity=0.769  Sum_probs=174.1

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +||++++++++.++.+++++++.|.|+++||+||+.++++|++|++...|.++....|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            59999999999999999999999999999999999999999999999888776555688999999999999999999999


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      +||+|++.....|+|++|+.++.+.++++|+++++++++.+++.+.+||+++...+++++|++|+|+|++|++|++++++
T Consensus        81 ~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~l  160 (327)
T PRK10754         81 VGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW  160 (327)
T ss_pred             CCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            99999876544589999999999999999999999999999999999999988888899999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |+.+|++|++++.+++++++++++|++
T Consensus       161 ak~~G~~v~~~~~~~~~~~~~~~~g~~  187 (327)
T PRK10754        161 AKALGAKLIGTVGSAQKAQRAKKAGAW  187 (327)
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence            999999999999999999999999975

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.98  E-value=1e-30  Score=235.56  Aligned_cols=184  Identities=26%  Similarity=0.261  Sum_probs=166.3

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +||++++...+.  .+++++.|.|.+.++||+||+.++++|++|++.+.|.++ ..+|.++|||++|+|+++|++++.++
T Consensus         7 ~~~a~~~~~~~~--~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~   83 (373)
T cd08299           7 KCKAAVLWEPKK--PFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK   83 (373)
T ss_pred             eeEEEEEecCCC--CcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence            489998886554  488899999999999999999999999999999988763 34688999999999999999999999


Q ss_pred             CCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCC
Q 036416          149 VGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSI  181 (256)
Q Consensus       149 ~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~  181 (256)
                      +||+|++...                                               ..|+|+||++++.+.++++|+++
T Consensus        84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l  163 (373)
T cd08299          84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA  163 (373)
T ss_pred             CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence            9999987520                                               14899999999999999999999


Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++++.+++++.+||+++...+++++|++|+|+| +|++|++++++|+.+|+ +|++++++++|+++++++|+++
T Consensus       164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~  238 (373)
T cd08299         164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE  238 (373)
T ss_pred             ChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999887778999999999997 69999999999999999 7999999999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.97  E-value=2.6e-30  Score=231.49  Aligned_cols=182  Identities=31%  Similarity=0.389  Sum_probs=164.4

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc----
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG----  146 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~----  146 (256)
                      |++++.+++  +.+++++.+.|.|+++||+|||.++++|++|++...|.++...+|.++|||++|+|+++|++++.    
T Consensus         2 ka~~~~~~~--~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~   79 (361)
T cd08231           2 RAAVLTGPG--KPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAG   79 (361)
T ss_pred             eEEEEcCCC--CCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccC
Confidence            788898766  35899999999999999999999999999999999887653457889999999999999999986    


Q ss_pred             --cCCCCEEEEeCC---------------------------------CCcceeeEEEecCC-CeEECCCCCCHHHHhhhc
Q 036416          147 --RTVGDIIAYAGG---------------------------------AMGSYAEEQILPAN-KVVPVPSSIDPVIAASIM  190 (256)
Q Consensus       147 --~~~Gd~V~~~~~---------------------------------~~G~~a~~~~v~~~-~~~~ip~~~~~~~aa~l~  190 (256)
                        +++||+|++...                                 ..|+|++|+.++.+ .++++|+++++++++.++
T Consensus        80 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~  159 (361)
T cd08231          80 EPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPAN  159 (361)
T ss_pred             CccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhc
Confidence              999999988621                                 24899999999996 799999999999999888


Q ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++.|||+++......++|++|||+| +|++|++++|+|+.+|+ +|+++++++++.++++++|++
T Consensus       160 ~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~  224 (361)
T cd08231         160 CALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD  224 (361)
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCC
Confidence            99999999998876677999999998 69999999999999999 999999999999999999986

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=1.5e-30  Score=231.37  Aligned_cols=174  Identities=22%  Similarity=0.263  Sum_probs=148.5

Q ss_pred             CCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHh---CCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEE
Q 036416           80 DPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRK---GVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAY  155 (256)
Q Consensus        80 ~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~  155 (256)
                      .++.+++++.+.|+| ++|||||||.++|||+.|.+...   +......+|.++|||++|+|+++|+++++|++||+|++
T Consensus        19 ~~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   98 (345)
T cd08293          19 VAENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS   98 (345)
T ss_pred             CccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence            356789999999987 49999999999999999964332   21111236789999999999999999999999999987


Q ss_pred             eCCCCcceeeEEEecCCCeEECCCCCCHHH----HhhhchhHHHHHHHHHHHcCCCCC--CEEEEecCCChHHHHHHHHH
Q 036416          156 AGGAMGSYAEEQILPANKVVPVPSSIDPVI----AASIMLKGMTAQFLLRRCFKVEPG--HTVLIQAAAGGVGSLLCQWA  229 (256)
Q Consensus       156 ~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~ga~g~vG~~ai~la  229 (256)
                      +.   ++|+||++++.+.++++|+++++.+    +++++.++.|||+++.+.+++++|  ++|||+||+|++|++++|+|
T Consensus        99 ~~---~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlA  175 (345)
T cd08293          99 FN---WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIG  175 (345)
T ss_pred             cC---CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            64   5799999999999999999854322    456778899999999888888877  99999999999999999999


Q ss_pred             HHcCC-eEEEEeCChhhHHHHHh-CCCCC
Q 036416          230 NALGA-TVIGTVSTKEKAAQAKD-DGCHH  256 (256)
Q Consensus       230 ~~~ga-~Vi~~~~~~~~~~~~~~-~Ga~~  256 (256)
                      +.+|+ +|++++++++|.+++++ +|+|+
T Consensus       176 k~~G~~~Vi~~~~s~~~~~~~~~~lGa~~  204 (345)
T cd08293         176 RLLGCSRVVGICGSDEKCQLLKSELGFDA  204 (345)
T ss_pred             HHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence            99999 89999999999999876 99874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.97  E-value=1.2e-30  Score=232.98  Aligned_cols=179  Identities=25%  Similarity=0.341  Sum_probs=156.7

Q ss_pred             EEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCCCCCCCCCCcccEEEEEEeCCCCCccCCCC
Q 036416           73 IRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD  151 (256)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd  151 (256)
                      +++.+++.+  +++++.|.|.|+++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|+++..+ +||
T Consensus         2 ~~~~~~g~~--~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd   78 (349)
T TIGR03201         2 WMMTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGK   78 (349)
T ss_pred             ceEecCCCC--ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence            345555543  788899999999999999999999999999987443 3334568999999999999999999887 999


Q ss_pred             EEEEeC--------------------------CCCcceeeEEEecCCCeEECCC------CCCHHHHhhhchhHHHHHHH
Q 036416          152 IIAYAG--------------------------GAMGSYAEEQILPANKVVPVPS------SIDPVIAASIMLKGMTAQFL  199 (256)
Q Consensus       152 ~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~------~~~~~~aa~l~~~~~ta~~~  199 (256)
                      +|++..                          ..+|+|+||+.+|.+.++++|+      ++++++++.++..+.++|++
T Consensus        79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a  158 (349)
T TIGR03201        79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQA  158 (349)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHH
Confidence            998621                          1258999999999999999999      89999999999999999999


Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +.. .++++|++|+|+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+++
T Consensus       159 ~~~-~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~  213 (349)
T TIGR03201       159 AVQ-AGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADL  213 (349)
T ss_pred             HHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce
Confidence            864 68999999999997 99999999999999999999999999999999999863

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=2.8e-30  Score=229.00  Aligned_cols=183  Identities=32%  Similarity=0.528  Sum_probs=165.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++.+++.  .+++++.+.|++.++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++++++
T Consensus         1 m~a~~~~~~~~--~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~   78 (333)
T cd08296           1 YKAVQVTEPGG--PLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKV   78 (333)
T ss_pred             CeEEEEccCCC--CceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCC
Confidence            79999997643  4888999999999999999999999999999999887654456889999999999999999999999


Q ss_pred             CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||+|++..                           ...|++++|+.++...++++|+++++++++.+++.+.|||+++..
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~  158 (333)
T cd08296          79 GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRN  158 (333)
T ss_pred             CCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHh
Confidence            99998621                           114899999999999999999999999999999999999999866


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      . ++++|++|+|+| +|++|++++++|+.+|++|+++++++++.++++++|+++
T Consensus       159 ~-~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~  210 (333)
T cd08296         159 S-GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHH  210 (333)
T ss_pred             c-CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcE
Confidence            5 899999999999 799999999999999999999999999999999999863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.97  E-value=2.1e-30  Score=230.27  Aligned_cols=182  Identities=24%  Similarity=0.285  Sum_probs=157.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeC----CCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCccc--EEEEEEeCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEI----GEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEA--VGEVVAVGP  142 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~--~G~V~~vG~  142 (256)
                      +|++....+. ++.+++++.++    |+|++|||||||++++||+.|++.+.|.... ...|.++|++.  .|++..+|+
T Consensus         8 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           8 LKAYVTGFPK-ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EecCCCCCCC-ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            6676654433 56799998887    8899999999999999999999998885432 34678899754  566667889


Q ss_pred             CCCccCCCCEEEEeCCCCcceeeEEEecC-CCeEECC-CCCCHH-HHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCC
Q 036416          143 GLTGRTVGDIIAYAGGAMGSYAEEQILPA-NKVVPVP-SSIDPV-IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG  219 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~-~~~~~ip-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g  219 (256)
                      +++++++||+|+++    |+|+||+++|. ..++++| ++++++ +++++++++.|||+++.+.+++++|++|||+||+|
T Consensus        87 ~v~~~~vGd~V~~~----g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G  162 (338)
T cd08295          87 GNPDFKVGDLVWGF----TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASG  162 (338)
T ss_pred             CCCCCCCCCEEEec----CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCcc
Confidence            99999999999865    68999999999 7999995 678887 78999999999999998888999999999999999


Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCCCC
Q 036416          220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGCHH  256 (256)
Q Consensus       220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga~~  256 (256)
                      ++|++++|+|+.+|++|+++++++++.+++++ +|+++
T Consensus       163 ~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~  200 (338)
T cd08295         163 AVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDD  200 (338)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCce
Confidence            99999999999999999999999999999998 99864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.97  E-value=1.6e-30  Score=230.60  Aligned_cols=187  Identities=35%  Similarity=0.518  Sum_probs=168.4

Q ss_pred             eEEEEEcccCCC-CceEEEEeeCCCCCC-CeEEEEEeEEeeChhhhHhHhCCCCCC-C----CCCCCCcccEEEEEEeCC
Q 036416           70 VKAIRVYEHGDP-EVLKWEDVEIGEPGE-GEIRVRNKAIGLNFIDVYYRKGVYKPA-K----MPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        70 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~~lG~e~~G~V~~vG~  142 (256)
                      |||+.+.+++.+ +.+.+++.|.|+|.+ +||+||+.++++|+.|+..+.|..+.. .    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999988765 468899999998887 999999999999999999988875432 2    577999999999999999


Q ss_pred             CCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHH
Q 036416          143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG  222 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG  222 (256)
                      ++..+++||+|++.....|+|++|+.++.+.++++|+++++++++.+++.+.|||+++....++++|++|||+|++|++|
T Consensus        81 ~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg  160 (341)
T cd08290          81 GVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG  160 (341)
T ss_pred             CCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence            99999999999987644589999999999999999999999999999999999999998878899999999999899999


Q ss_pred             HHHHHHHHHcCCeEEEEeCCh----hhHHHHHhCCCCC
Q 036416          223 SLLCQWANALGATVIGTVSTK----EKAAQAKDDGCHH  256 (256)
Q Consensus       223 ~~ai~la~~~ga~Vi~~~~~~----~~~~~~~~~Ga~~  256 (256)
                      ++++|+|+.+|++|++++.++    ++.++++++|+++
T Consensus       161 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~  198 (341)
T cd08290         161 QAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADH  198 (341)
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCE
Confidence            999999999999999998876    6788889999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.97  E-value=4.6e-30  Score=230.57  Aligned_cols=184  Identities=28%  Similarity=0.335  Sum_probs=165.7

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ++|||+++.+++.+  +++++.+.|.+.++||+||+.++++|++|++...|.++ ...|.++|||++|+|+++|+++.++
T Consensus         1 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08278           1 MKTTAAVVREPGGP--FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGL   77 (365)
T ss_pred             CccEEeeeccCCCc--ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccC
Confidence            46999999976543  77889999999999999999999999999999988765 3368899999999999999999999


Q ss_pred             CCCCEEEEeC------------------------------------------------CCCcceeeEEEecCCCeEECCC
Q 036416          148 TVGDIIAYAG------------------------------------------------GAMGSYAEEQILPANKVVPVPS  179 (256)
Q Consensus       148 ~~Gd~V~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~ip~  179 (256)
                      ++||+|++..                                                ...|+|++|+.++...++++|+
T Consensus        78 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          78 KPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            9999998521                                                0138899999999999999999


Q ss_pred             CCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++++++.+++.+.|||.++...+++++|++|+|+| +|++|++++|+|+.+|+ .+++++.+++|.++++++|++
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~  233 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT  233 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999999999988888899999999997 69999999999999999 588998999999999999985

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=3.2e-30  Score=226.64  Aligned_cols=176  Identities=23%  Similarity=0.357  Sum_probs=147.6

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeC-hhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLN-FIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +||++++.   .++.+++++.+.|+|+++||+|||.+++|| ++|++.+.|.++.   ..+|.++|||++|+|+++|+++
T Consensus         1 ~~ka~~~~---~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v   77 (308)
T TIGR01202         1 KTQAIVLS---GPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT   77 (308)
T ss_pred             CceEEEEe---CCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC
Confidence            47899998   455699999999999999999999999995 7999988887643   2479999999999999999998


Q ss_pred             CccCCCCEEEEeCC--------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          145 TGRTVGDIIAYAGG--------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~--------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                       ++++||||++...        ..|+|+||+.+|.+.++++|++++++. +.+. ...|||+++...  ..+|++|+|+|
T Consensus        78 -~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~--~~~~~~vlV~G  152 (308)
T TIGR01202        78 -GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGA--EVKVLPDLIVG  152 (308)
T ss_pred             -CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhc--ccCCCcEEEEC
Confidence             6999999986421        259999999999999999999999865 4443 468999988652  34689999998


Q ss_pred             CCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCC
Q 036416          217 AAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       217 a~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~G  253 (256)
                       +|++|++++|+|+.+|++ |++++..++|++.+++++
T Consensus       153 -~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~  189 (308)
T TIGR01202       153 -HGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE  189 (308)
T ss_pred             -CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc
Confidence             699999999999999997 566677777887776554

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=2.9e-30  Score=235.33  Aligned_cols=182  Identities=24%  Similarity=0.253  Sum_probs=150.2

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhH-hCCCC----C--CCCCCCCCcccEEEEEEe
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR-KGVYK----P--AKMPFTPGMEAVGEVVAV  140 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~----~--~~~p~~lG~e~~G~V~~v  140 (256)
                      |.||++++.+++   .++++++|.|+|+++||+|||.++|||++|++.+ .|...    .  ..+|.++|||++|+|+++
T Consensus         1 m~~~a~~~~~~~---~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v   77 (410)
T cd08238           1 MKTKAWRMYGKG---DLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV   77 (410)
T ss_pred             CCcEEEEEEcCC---ceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence            458999998544   5999999999999999999999999999999976 45421    1  136889999999999999


Q ss_pred             CCCCC-ccCCCCEEEEeCC---------------CCcceeeEEEecCC----CeEECCCCCCHHHHhhh-chh-HHHHHH
Q 036416          141 GPGLT-GRTVGDIIAYAGG---------------AMGSYAEEQILPAN----KVVPVPSSIDPVIAASI-MLK-GMTAQF  198 (256)
Q Consensus       141 G~~v~-~~~~Gd~V~~~~~---------------~~G~~a~~~~v~~~----~~~~ip~~~~~~~aa~l-~~~-~~ta~~  198 (256)
                      |++|+ .+++||||++...               .+|+|+||+++|.+    .++++|+++++++++.+ +.. ..+++.
T Consensus        78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~  157 (410)
T cd08238          78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT  157 (410)
T ss_pred             CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence            99998 5999999987521               25999999999987    68999999999998754 211 122333


Q ss_pred             H--------HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhhHHHHHhC
Q 036416          199 L--------LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       199 ~--------l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~~~~~~~~~~~~~  252 (256)
                      +        +...+++++|++|+|+|++|++|++++|+|+.+|+   +|++++.+++|+++++++
T Consensus       158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            3        23456889999999999889999999999999864   799999999999999997

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.97  E-value=6.9e-30  Score=227.91  Aligned_cols=181  Identities=28%  Similarity=0.316  Sum_probs=158.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---C--------CCCCCCCCCcccEEEEE
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---K--------PAKMPFTPGMEAVGEVV  138 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~--------~~~~p~~lG~e~~G~V~  138 (256)
                      ||++++.++   +.+.+++++.|+|+++||+||+.++++|++|++.+.+..   +        ...+|.++|||++|+|+
T Consensus         1 mka~~~~~~---~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~   77 (351)
T cd08233           1 MKAARYHGR---KDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVV   77 (351)
T ss_pred             CceEEEecC---CceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEE
Confidence            789999854   458999999999999999999999999999998765421   1        01368899999999999


Q ss_pred             EeCCCCCccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhch
Q 036416          139 AVGPGLTGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIML  191 (256)
Q Consensus       139 ~vG~~v~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~  191 (256)
                      ++|++++++++||+|++..                           ..+|+|++|+.++...++++|+++++++++.+ .
T Consensus        78 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~  156 (351)
T cd08233          78 EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-E  156 (351)
T ss_pred             EeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-c
Confidence            9999999999999998732                           11589999999999999999999999998765 6


Q ss_pred             hHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       192 ~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .+.|||+++ ..+++++|++|+|+| +|++|++++|+|+.+|+ +|++++.++++.++++++|+|+
T Consensus       157 ~~~ta~~~l-~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~  220 (351)
T cd08233         157 PLAVAWHAV-RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATI  220 (351)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            778999998 667899999999998 59999999999999999 8999999999999999999863

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=5.9e-30  Score=231.90  Aligned_cols=190  Identities=34%  Similarity=0.455  Sum_probs=165.8

Q ss_pred             cccceEEEEEc--ccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC----------CCCCCCCCcc
Q 036416           66 RTNMVKAIRVY--EHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP----------AKMPFTPGME  132 (256)
Q Consensus        66 ~~~~~~a~~~~--~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~p~~lG~e  132 (256)
                      .|.+|+++++.  +++.+ ..+++++.+.|.++++||+|++.++++|++|++...|....          ...+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            45679999885  34444 35888999999999999999999999999999887764110          1123588999


Q ss_pred             cEEEEEEeCCCCCccCCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHH
Q 036416          133 AVGEVVAVGPGLTGRTVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVI  185 (256)
Q Consensus       133 ~~G~V~~vG~~v~~~~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~  185 (256)
                      ++|+|+++|++++.+++||+|++...                           ..|+|++|++++...++++|+++++++
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~  168 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEE  168 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHH
Confidence            99999999999999999999988642                           248999999999999999999999999


Q ss_pred             HhhhchhHHHHHHHHHHH--cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          186 AASIMLKGMTAQFLLRRC--FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       186 aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++.+++.+.|||+++...  +++++|++|+|+|++|++|++++++|+.+|+++++++.+++|+++++++|++
T Consensus       169 aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~  240 (393)
T cd08246         169 AAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAE  240 (393)
T ss_pred             HhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCC
Confidence            999999999999998655  6789999999999889999999999999999999999999999999999975

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-29  Score=223.14  Aligned_cols=186  Identities=30%  Similarity=0.360  Sum_probs=169.7

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ||||+++..++.+..+.+++.+.|.+.++||+|||.++++|+.|+....|..+. ...|.++|+|++|+|+++|++++.+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            599999998887777888888888899999999999999999999988876532 3356789999999999999999999


Q ss_pred             CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ++||+|+++.. +|+|++|++++.+.++++|+++++.+++.+++.+.+||+++...+++++|++|+|+|++|++|+++++
T Consensus        81 ~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~  159 (334)
T PTZ00354         81 KEGDRVMALLP-GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQ  159 (334)
T ss_pred             CCCCEEEEecC-CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHH
Confidence            99999998743 48999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+.+|++++.++.++++.++++++|++
T Consensus       160 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~  187 (334)
T PTZ00354        160 LAEKYGAATIITTSSEEKVDFCKKLAAI  187 (334)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence            9999999988899999999999999985

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=9.1e-30  Score=226.89  Aligned_cols=180  Identities=26%  Similarity=0.247  Sum_probs=153.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++++++   .+++++.|.|+| +++||+|||.++++|++|++...+.. ...+|.++|||++|+|+++|+++++++
T Consensus         1 Mka~~~~~~~---~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~   76 (347)
T PRK10309          1 MKSVVNDTDG---IVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLH   76 (347)
T ss_pred             CceEEEeCCC---ceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCC
Confidence            7899998654   488999999998 69999999999999999997543211 123578999999999999999999999


Q ss_pred             CCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          149 VGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       149 ~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      +||+|++..                          ...|+|+||+.+|.+.++++|+++++++++.+. ...++|+++ .
T Consensus        77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~  154 (347)
T PRK10309         77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-H  154 (347)
T ss_pred             CCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-H
Confidence            999998753                          125899999999999999999999999998663 445577775 4


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ...+++|++|+|+| +|++|++++|+|+.+|++ |++++++++|+++++++|+++
T Consensus       155 ~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  208 (347)
T PRK10309        155 LAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ  208 (347)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence            56889999999998 699999999999999996 788999999999999999863

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.97  E-value=1.7e-29  Score=222.12  Aligned_cols=185  Identities=29%  Similarity=0.372  Sum_probs=164.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||++++.+++++.+++++.|.|.++++||+|++.++++|++|+..+.|.++. ..+|.++|||++|+|+++  +++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            78999998887778999999999999999999999999999999998887543 335789999999999998  567899


Q ss_pred             CCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC--C-CCCEEEEecCCCh
Q 036416          149 VGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV--E-PGHTVLIQAAAGG  220 (256)
Q Consensus       149 ~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~--~-~g~~VlI~ga~g~  220 (256)
                      +||+|++..     ..+|+|++|+.++.+.++++|+++++++++.+++.+.++|+++....+.  . .+++|+|+|++|+
T Consensus        79 ~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~  158 (325)
T cd05280          79 EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG  158 (325)
T ss_pred             CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccH
Confidence            999999863     1258999999999999999999999999999999999999988765433  5 4579999998999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++++|+|+.+|++|++++.+++++++++++|+++
T Consensus       159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         159 VGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE
Confidence            999999999999999999999999999999999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.97  E-value=1.3e-29  Score=223.54  Aligned_cols=178  Identities=22%  Similarity=0.283  Sum_probs=154.6

Q ss_pred             ceEEEEEcc-c-CCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           69 MVKAIRVYE-H-GDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        69 ~~~a~~~~~-~-~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +|+++++.. + +++  +.+++++.+.|+|++|||+|||.+++||+.|.+...+  + ..+|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~-~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L-NEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C-CCCCcEecceEEEEEec---CC
Confidence            489999998 3 444  7899999999999999999999999999987653221  1 23688999999999995   45


Q ss_pred             CccCCCCEEEEeCCCCcceeeEEEecCC---CeEECCCCCC-----HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          145 TGRTVGDIIAYAGGAMGSYAEEQILPAN---KVVPVPSSID-----PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~~~---~~~~ip~~~~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      +.+++||+|++.    ++|++|++++.+   .++++|++++     ...++++++.++|||+++...+++++|++|||+|
T Consensus        76 ~~~~~Gd~V~~~----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~g  151 (329)
T cd08294          76 SKFPVGTIVVAS----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNG  151 (329)
T ss_pred             CCCCCCCEEEee----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEec
Confidence            679999999875    579999999999   9999999998     2333467889999999998888999999999999


Q ss_pred             CCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          217 AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       217 a~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+|++|++++|+|+.+|++|+++++++++.++++++|+++
T Consensus       152 a~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~  191 (329)
T cd08294         152 AAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDA  191 (329)
T ss_pred             CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence            9999999999999999999999999999999999999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.97  E-value=1.4e-29  Score=223.73  Aligned_cols=171  Identities=22%  Similarity=0.262  Sum_probs=150.2

Q ss_pred             cccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEE
Q 036416           76 YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAY  155 (256)
Q Consensus        76 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~  155 (256)
                      +....++.+++.+.+.|+|++|||||||.++++|+.|.   .|.++....|.++|.|++|+|+++|+   .+++||+|++
T Consensus        11 ~~~~~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~   84 (325)
T TIGR02825        11 VGYPTDSDFELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLA   84 (325)
T ss_pred             CCCCCCCceEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEE
Confidence            34456778999999999999999999999999999654   44433333578999999999999874   5999999997


Q ss_pred             eCCCCcceeeEEEecCCCeEEC----CCCCCHHHH-hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHH
Q 036416          156 AGGAMGSYAEEQILPANKVVPV----PSSIDPVIA-ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWAN  230 (256)
Q Consensus       156 ~~~~~G~~a~~~~v~~~~~~~i----p~~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~  230 (256)
                      +    ++|++|+.++.+.+.++    |++++++++ +++++.+.|||+++...+++++|++|||+|++|++|++++|+|+
T Consensus        85 ~----~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk  160 (325)
T TIGR02825        85 S----PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAK  160 (325)
T ss_pred             e----cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence            5    46999999999888777    899999997 67899999999999888899999999999999999999999999


Q ss_pred             HcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          231 ALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       231 ~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ..|++|+++++++++.++++++|+|+
T Consensus       161 ~~G~~Vi~~~~s~~~~~~~~~lGa~~  186 (325)
T TIGR02825       161 LKGCKVVGAAGSDEKVAYLKKLGFDV  186 (325)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=2.1e-29  Score=223.44  Aligned_cols=181  Identities=27%  Similarity=0.335  Sum_probs=157.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++.+   ++.+++++++.|.|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~---~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   77 (339)
T PRK10083          1 MKSIVIEK---PNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARI   77 (339)
T ss_pred             CeEEEEec---CCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCC
Confidence            68999985   446999999999999999999999999999999998887655457899999999999999999999999


Q ss_pred             CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|+...                          ..+|+|++|+.++...++++|+++++++++ +...+.++|. +...
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~-~~~~  155 (339)
T PRK10083         78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN-VTGR  155 (339)
T ss_pred             CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH-HHHh
Confidence            99998421                          124899999999999999999999998876 5566777775 4466


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHH-cCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANA-LGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~-~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++|++|+|+| +|++|++++|+|+. +|++ +++++++++|.++++++|+|+
T Consensus       156 ~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  209 (339)
T PRK10083        156 TGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW  209 (339)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            7899999999999 79999999999996 6995 777888899999999999863

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=2.3e-29  Score=220.32  Aligned_cols=184  Identities=37%  Similarity=0.464  Sum_probs=167.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++.+...+.+..+.+.+.+.|.++++||+||+.++++|+.|++...|..+....|.++|||++|+|+++|.  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            6888998777667788888888889999999999999999999999888765545678999999999999995  57999


Q ss_pred             CCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          150 GDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       150 Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      ||+|+++..     ..|+|++|+.++...++++|+++++++++.+++++.+||+++....++++|++|+|+|++|++|++
T Consensus        79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~  158 (320)
T cd08243          79 GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLA  158 (320)
T ss_pred             CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHH
Confidence            999998752     248999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|+|+.+|++|++++.++++.++++++|++
T Consensus       159 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  189 (320)
T cd08243         159 ALKLAKALGATVTATTRSPERAALLKELGAD  189 (320)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc
Confidence            9999999999999999999999999999985

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.97  E-value=3e-29  Score=223.77  Aligned_cols=182  Identities=24%  Similarity=0.228  Sum_probs=162.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++.+++   .+.+++.+.|.+.++||+||+.++++|++|++...+.++....|.++|||++|+|+++|++++++++
T Consensus         1 mka~~~~~~~---~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~   77 (351)
T cd08285           1 MKAFAMLGIG---KVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKP   77 (351)
T ss_pred             CceEEEccCC---ccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCC
Confidence            7899999655   3788899999999999999999999999999988876654456899999999999999999999999


Q ss_pred             CCEEEEeCC-----------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHH
Q 036416          150 GDIIAYAGG-----------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       150 Gd~V~~~~~-----------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      ||+|++...                             ..|+|++|+.++..  .++++|+++++++++.++..+.|||+
T Consensus        78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~  157 (351)
T cd08285          78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFH  157 (351)
T ss_pred             CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHH
Confidence            999997431                             25899999999974  89999999999999999999999999


Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++ ..+++++|++|||+| +|++|++++|+|+.+|+ .|++++.+++|.++++++|+++
T Consensus       158 ~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  214 (351)
T cd08285         158 GA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD  214 (351)
T ss_pred             HH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce
Confidence            86 557899999999997 69999999999999999 5888989999999999999863

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.3e-29  Score=223.86  Aligned_cols=184  Identities=33%  Similarity=0.493  Sum_probs=162.0

Q ss_pred             eEEEEEcccCCCCceEEEE-eeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC--------------------CCCCCCC
Q 036416           70 VKAIRVYEHGDPEVLKWED-VEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--------------------PAKMPFT  128 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~~  128 (256)
                      ||++.+..++.++.+.+.+ .+.|.+.+++|+|||.++++|++|+++..|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            6888888777766777764 477788999999999999999999998877543                    2346789


Q ss_pred             CCcccEEEEEEeCCCCCccCCCCEEEEeC------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc
Q 036416          129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAG------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM  190 (256)
Q Consensus       129 lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~  190 (256)
                      +|||++|+|+++|++++++++||+|++..                  ..+|++++|+.++...++++|+++++++++.++
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~  160 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP  160 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence            99999999999999999999999998742                  124899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +.+.|||+++ ...++++|++|||+|++|++|++++++|+.+|++|++++.++ +++.++++|++
T Consensus       161 ~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~  223 (350)
T cd08274         161 CSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGAD  223 (350)
T ss_pred             cHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCe
Confidence            9999999988 667899999999999889999999999999999999998765 88888999974

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.97  E-value=1.5e-29  Score=226.02  Aligned_cols=181  Identities=31%  Similarity=0.347  Sum_probs=147.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCC-CCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPF-TPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |+++++...+..  ..+++.+.|.+.++||+|||.++|||++|++.+.|..+....+. ++|||++|+|+++| .++.++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~   77 (350)
T COG1063           1 MKAAVVYVGGGD--VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFK   77 (350)
T ss_pred             CceeEEEecCCc--cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCC
Confidence            556666644332  33667776778999999999999999999999999877665666 99999999999999 778899


Q ss_pred             CCCEEEEeC------------------C-------------CCcceeeEEEecCCCeEE-CCCCCCHHHHhhhchhHHHH
Q 036416          149 VGDIIAYAG------------------G-------------AMGSYAEEQILPANKVVP-VPSSIDPVIAASIMLKGMTA  196 (256)
Q Consensus       149 ~Gd~V~~~~------------------~-------------~~G~~a~~~~v~~~~~~~-ip~~~~~~~aa~l~~~~~ta  196 (256)
                      +||||++.+                  .             .+|+|+||+.+|.+..++ +|+++ ..+++++...+.++
T Consensus        78 ~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~  156 (350)
T COG1063          78 VGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATA  156 (350)
T ss_pred             CCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhh
Confidence            999998642                  1             258999999999765554 58887 55556677888999


Q ss_pred             HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh-CCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD-DGCH  255 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~-~Ga~  255 (256)
                      +++.......+++++|+|+| +|++|++++++|+..|+ +|++++.+++|++++++ +|++
T Consensus       157 ~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~  216 (350)
T COG1063         157 YHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD  216 (350)
T ss_pred             hhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence            77754555667777999999 69999999999999998 79999999999999998 6654

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.97  E-value=2.4e-29  Score=223.07  Aligned_cols=184  Identities=36%  Similarity=0.560  Sum_probs=164.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++++++.  .+.+.+.+.|.+.+++|+|++.++++|++|++...|.++.   ..+|.++|+|++|+|+++|+++..
T Consensus         1 ~ka~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~   78 (340)
T cd05284           1 MKAARLYEYGK--PLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDG   78 (340)
T ss_pred             CeeeEeccCCC--CceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCc
Confidence            68999997754  4788888999999999999999999999999998886542   346789999999999999999999


Q ss_pred             cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      +++||+|++...                          ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l  158 (340)
T cd05284          79 LKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV  158 (340)
T ss_pred             CcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            999999997641                          248999999999999999999999999999999999999998


Q ss_pred             HHH-cCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRC-FKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ... ..+.+|++|||+| +|++|++++|+|+.+| ++|+++++++++.+.++++|+++
T Consensus       159 ~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~  215 (340)
T cd05284         159 KKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADH  215 (340)
T ss_pred             HHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcE
Confidence            776 4688999999999 5779999999999999 79999999999999999999853

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.97  E-value=3.5e-29  Score=220.95  Aligned_cols=182  Identities=40%  Similarity=0.621  Sum_probs=167.4

Q ss_pred             eEEEEEcccCC--CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGD--PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~--~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++..++.  ++.+++++.+.|.+.++||+||+.++++|+.|++...|.++. ..+|.++|+|++|+|+.+|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~   81 (329)
T cd08250           2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD   81 (329)
T ss_pred             ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence            89999999887  788999999999999999999999999999999988887643 457889999999999999999999


Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHH
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC  226 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai  226 (256)
                      +++||+|+++..  |+|++|+.++.+.++++|+.  +.+++.++..+.|||+++....++++|++|+|+|++|++|++++
T Consensus        82 ~~~Gd~V~~~~~--g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~  157 (329)
T cd08250          82 FKVGDAVATMSF--GAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAV  157 (329)
T ss_pred             CCCCCEEEEecC--cceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHH
Confidence            999999998765  89999999999999999997  35677889999999999988888999999999999999999999


Q ss_pred             HHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          227 QWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       227 ~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|+..|++|+++++++++.++++++|++
T Consensus       158 ~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  186 (329)
T cd08250         158 QLAKLAGCHVIGTCSSDEKAEFLKSLGCD  186 (329)
T ss_pred             HHHHHcCCeEEEEeCcHHHHHHHHHcCCc
Confidence            99999999999999999999999999974

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=4.6e-29  Score=217.62  Aligned_cols=179  Identities=29%  Similarity=0.383  Sum_probs=162.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++++.+ |..+++++.+.|.++++||+||+.++++|+.|++...+.    ..|.++|||++|+|+++|+++..+++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~   75 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV   75 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence            6889998765 778888899999999999999999999999999876522    23578999999999999999999999


Q ss_pred             CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416          150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA  229 (256)
Q Consensus       150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la  229 (256)
                      ||+|+++.. .|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...... +|++|+|+|+.|++|.+++++|
T Consensus        76 Gd~V~~~~~-~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a  153 (305)
T cd08270          76 GARVVGLGA-MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA  153 (305)
T ss_pred             CCEEEEecC-CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH
Confidence            999998752 48999999999999999999999999999999999999998776555 5999999998899999999999


Q ss_pred             HHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          230 NALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       230 ~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +..|++|+.+++++++.+.++++|++
T Consensus       154 ~~~g~~v~~~~~~~~~~~~~~~~g~~  179 (305)
T cd08270         154 ALAGAHVVAVVGSPARAEGLRELGAA  179 (305)
T ss_pred             HHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999999999975

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=4.8e-29  Score=219.13  Aligned_cols=185  Identities=39%  Similarity=0.586  Sum_probs=165.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      |||+.+++++.++.+.+.+.+.|.+.+++|+|++.++++|+.|++...|..+.   ...|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            68999988777778888888888889999999999999999999988876432   345788999999999999999999


Q ss_pred             cCCCCEEEEeCC-CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416          147 RTVGDIIAYAGG-AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL  225 (256)
Q Consensus       147 ~~~Gd~V~~~~~-~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~a  225 (256)
                      +++||+|+++.. ..|+|++|+.++...++++|+++++++++.+++.+.||| ++...+++++|++|+|+|++|++|.++
T Consensus        81 ~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~  159 (324)
T cd08244          81 AWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLL  159 (324)
T ss_pred             CCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHH
Confidence            999999998751 138999999999999999999999999999999999995 555667899999999999999999999


Q ss_pred             HHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          226 CQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       226 i~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++|+.+|++|+++++++++.++++++|++
T Consensus       160 ~~la~~~g~~v~~~~~~~~~~~~~~~~g~~  189 (324)
T cd08244         160 VQLAKAAGATVVGAAGGPAKTALVRALGAD  189 (324)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999975

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=2.9e-29  Score=222.32  Aligned_cols=181  Identities=31%  Similarity=0.414  Sum_probs=161.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++++++.+..  +++.|.|.+.++||+||+.++++|++|++.+.|..+.. .|.++|||++|+|+++|++++.+++
T Consensus         1 mka~~~~~~~~~~~--~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~~-~~~~~g~e~~G~V~~~G~~v~~~~~   77 (338)
T PRK09422          1 MKAAVVNKDHTGDV--VVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDK-TGRILGHEGIGIVKEVGPGVTSLKV   77 (338)
T ss_pred             CeEEEecCCCCCce--EEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCCC-CCccCCcccceEEEEECCCCccCCC
Confidence            78999997665422  78889999999999999999999999999988876432 4678999999999999999999999


Q ss_pred             CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||+|++.+                           ..+|++++|+.++...++++|+++++.+++.+++.+.|||+++ .
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~  156 (338)
T PRK09422         78 GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-K  156 (338)
T ss_pred             CCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-H
Confidence            99998621                           1158999999999999999999999999999999999999998 6


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+++++|++|||+| +|++|++++++|+. .|++|++++++++++++++++|++
T Consensus       157 ~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~  209 (338)
T PRK09422        157 VSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGAD  209 (338)
T ss_pred             hcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCc
Confidence            67899999999999 69999999999998 499999999999999999999985

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.97  E-value=6.8e-29  Score=221.75  Aligned_cols=184  Identities=20%  Similarity=0.231  Sum_probs=153.4

Q ss_pred             ceEEEEEccc----CCCCceEEEEe---eCC-CCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCc--ccEEEEE
Q 036416           69 MVKAIRVYEH----GDPEVLKWEDV---EIG-EPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGM--EAVGEVV  138 (256)
Q Consensus        69 ~~~a~~~~~~----~~~~~l~~~~~---~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~--e~~G~V~  138 (256)
                      +.|.+.+.+.    -.++++++++.   +.| ++++||||||+.++++|+.|+....+.......|.++|+  |++|+|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~v~   87 (348)
T PLN03154          8 ENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGVSK   87 (348)
T ss_pred             cceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEEEE
Confidence            3577776432    23466887774   555 358999999999999999998754432322235889998  8899999


Q ss_pred             EeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCC--eEE--CCCCCCHH-HHhhhchhHHHHHHHHHHHcCCCCCCEEE
Q 036416          139 AVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANK--VVP--VPSSIDPV-IAASIMLKGMTAQFLLRRCFKVEPGHTVL  213 (256)
Q Consensus       139 ~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~--~~~--ip~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl  213 (256)
                      .+|++++++++||+|+++    |+|+||+.++...  +++  +|++++++ +++++++++.|||+++...+++++|++||
T Consensus        88 ~vg~~v~~~~~Gd~V~~~----~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~Vl  163 (348)
T PLN03154         88 VVDSDDPNFKPGDLISGI----TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVF  163 (348)
T ss_pred             EEecCCCCCCCCCEEEec----CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEE
Confidence            999999999999999865    6799999999753  544  48999986 68889999999999998888999999999


Q ss_pred             EecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCCCC
Q 036416          214 IQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGCHH  256 (256)
Q Consensus       214 I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga~~  256 (256)
                      |+|++|++|++++|+|+.+|++|++++.+++|+++++ ++|+|+
T Consensus       164 V~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~  207 (348)
T PLN03154        164 VSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDE  207 (348)
T ss_pred             EecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCE
Confidence            9998899999999999999999999999999999997 799863

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.97  E-value=4.7e-29  Score=224.04  Aligned_cols=183  Identities=27%  Similarity=0.365  Sum_probs=163.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      +||+++.+++.+  +++++.+.|.+++++|+|++.++++|+.|++.+.|.++. .+|.++|||++|+|+++|++++.+++
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~-~~~~i~g~e~~G~V~~vG~~v~~~~~   77 (365)
T cd05279           1 CKAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT-PLPVILGHEGAGIVESIGPGVTTLKP   77 (365)
T ss_pred             CceeEEecCCCC--cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC-CCCcccccceeEEEEEeCCCcccCCC
Confidence            367888865544  888999999999999999999999999999999887653 36789999999999999999999999


Q ss_pred             CCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416          150 GDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSID  182 (256)
Q Consensus       150 Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~  182 (256)
                      ||+|++...                                               ..|+|++|+.++.+.++++|++++
T Consensus        78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~  157 (365)
T cd05279          78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP  157 (365)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence            999987621                                               136899999999999999999999


Q ss_pred             HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++.+.+.+.+||+++...+++++|++|||+| +|++|++++++|+.+|++ |++++++++|.++++++|+++
T Consensus       158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  231 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE  231 (365)
T ss_pred             HHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence            9999999999999999988888999999999997 699999999999999996 777777899999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=6.7e-29  Score=218.75  Aligned_cols=183  Identities=34%  Similarity=0.441  Sum_probs=166.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |+++++..+  ++.+.+++.|.|.+.++||+|++.++++|+.|++...|.++....|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~   78 (332)
T cd08259           1 MKAAILHKP--NKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKP   78 (332)
T ss_pred             CeEEEEecC--CCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCC
Confidence            688998753  345888999999999999999999999999999999887665556889999999999999999999999


Q ss_pred             CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|+++..                          ..|+|++|++++...++++|+++++++++.+++.+.+||+++.. 
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-  157 (332)
T cd08259          79 GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-  157 (332)
T ss_pred             CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-
Confidence            999998751                          14899999999999999999999999999999999999999977 


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++.+|++++|+|++|++|++++++++..|++|+++++++++.+.++++|++
T Consensus       158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~  209 (332)
T cd08259         158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGAD  209 (332)
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCc
Confidence            7899999999999999999999999999999999999998899988888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.97  E-value=7.2e-29  Score=218.32  Aligned_cols=184  Identities=25%  Similarity=0.353  Sum_probs=162.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++..+++++.+++++.|.|.|+++||+|++.++++|++|+....|.++. ..+|.++|||++|+|++  +++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998888778999999999999999999999999999999988876532 33578899999999999  7778899


Q ss_pred             CCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH--HcCCC-CCCEEEEecCCCh
Q 036416          149 VGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR--CFKVE-PGHTVLIQAAAGG  220 (256)
Q Consensus       149 ~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~-~g~~VlI~ga~g~  220 (256)
                      +||+|+++.     ...|+|++|++++.+.++++|+++++++++.+++.+++++.++..  ..... +|++|+|+|++|+
T Consensus        79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~  158 (324)
T cd08288          79 PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGG  158 (324)
T ss_pred             CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcH
Confidence            999999864     125899999999999999999999999999999999999877641  13444 6789999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|.+++|+|+.+|++|++++.+++|.++++++|++
T Consensus       159 vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~  193 (324)
T cd08288         159 VGSVAVALLARLGYEVVASTGRPEEADYLRSLGAS  193 (324)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999985

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=6.4e-29  Score=219.73  Aligned_cols=186  Identities=34%  Similarity=0.349  Sum_probs=168.7

Q ss_pred             eEEEEEcccCCCC---ceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPE---VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~---~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++++++.+.   .+.+++.+.|++.+++|+|++.++++|+.|++.+.+..+....|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            6899999887765   4777888889999999999999999999999988876654446778999999999999999999


Q ss_pred             cCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC-----CCEEEEecCCC
Q 036416          147 RTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-----GHTVLIQAAAG  219 (256)
Q Consensus       147 ~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~ga~g  219 (256)
                      +++||+|++...  ..|+|++|+.++...++++|+++++++++.+++.+.|||+++.+.+.+.+     |++|+|+|++|
T Consensus        81 ~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g  160 (336)
T cd08252          81 FKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAG  160 (336)
T ss_pred             CCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCc
Confidence            999999998752  45899999999999999999999999999999999999999888788887     99999999899


Q ss_pred             hHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCC
Q 036416          220 GVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       220 ~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|++++++|+.+| ++|++++.++++.++++++|++
T Consensus       161 ~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  197 (336)
T cd08252         161 GVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGAD  197 (336)
T ss_pred             hHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCc
Confidence            99999999999999 8999999999999999999975

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=6.1e-29  Score=225.77  Aligned_cols=190  Identities=34%  Similarity=0.445  Sum_probs=165.8

Q ss_pred             cccceEEEEEcc--cCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC----------CCCCC-CCCCc
Q 036416           66 RTNMVKAIRVYE--HGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK----------PAKMP-FTPGM  131 (256)
Q Consensus        66 ~~~~~~a~~~~~--~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~~lG~  131 (256)
                      .+.+|||+++..  +++| +.+++.+.+.|.|+++||+|++.++++|+.|++...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            356699999965  6665 6799999999999999999999999999999887665421          01123 37999


Q ss_pred             ccEEEEEEeCCCCCccCCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHH
Q 036416          132 EAVGEVVAVGPGLTGRTVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPV  184 (256)
Q Consensus       132 e~~G~V~~vG~~v~~~~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~  184 (256)
                      |++|+|+++|++++.+++||+|++...                           ..|+|++|+.++.+.++++|++++++
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~  163 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWE  163 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHH
Confidence            999999999999999999999988641                           24899999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHH--HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          185 IAASIMLKGMTAQFLLRR--CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       185 ~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++.+++.+.+||+++..  .+++++|++|+|+|++|++|++++++|+.+|+++++++.++++.++++++|++
T Consensus       164 ~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~  236 (398)
T TIGR01751       164 EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAE  236 (398)
T ss_pred             HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCC
Confidence            999999999999999865  46789999999999889999999999999999999999999999999999975

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.3e-28  Score=217.41  Aligned_cols=184  Identities=30%  Similarity=0.439  Sum_probs=166.4

Q ss_pred             eEEEEEcccCCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           70 VKAIRVYEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        70 ~~a~~~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ||++++.+.+.+  +.+++++.+.|.++++||+||+.++++|++|++...|..+....|.++|||++|+|+++|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            688999877742  468888888888999999999999999999999998877655578899999999999999999999


Q ss_pred             CCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          148 TVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       148 ~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      ++||+|++...                           ..|+|++|+.++.+.++++|+++++.+++.+++.+.|||+++
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~  160 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL  160 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH
Confidence            99999986210                           248999999999999999999999999999999999999998


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                       ..+++++|++|+|+| +|++|++++++|+..|++|++++.++++.++++++|++
T Consensus       161 -~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~  213 (329)
T cd08298         161 -KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEHQELARELGAD  213 (329)
T ss_pred             -HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCc
Confidence             778999999999997 79999999999999999999999999999999999985

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.97  E-value=8.9e-29  Score=217.92  Aligned_cols=184  Identities=25%  Similarity=0.333  Sum_probs=159.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC-CCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++..++++..+.+++.+.|.|.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.|  +..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988877788899999999999999999999999999987664321 122358899999999999954  57799


Q ss_pred             CCCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC---CCCCCEEEEecCCCh
Q 036416          149 VGDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGG  220 (256)
Q Consensus       149 ~Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~  220 (256)
                      +||+|++...     ..|+|++|+.++.+.++++|+++++++++.+++.+.|||.++....+   ...|++|+|+|++|+
T Consensus        79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~  158 (326)
T cd08289          79 PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG  158 (326)
T ss_pred             CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCch
Confidence            9999998741     25899999999999999999999999999999999999988764332   345789999998899


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++++|+|+.+|++|++++++++++++++++|++
T Consensus       159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  193 (326)
T cd08289         159 VGSLAVSILAKLGYEVVASTGKADAADYLKKLGAK  193 (326)
T ss_pred             HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999975

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.4e-28  Score=218.37  Aligned_cols=184  Identities=36%  Similarity=0.519  Sum_probs=166.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++.+++ +..+++.+.+.|.+.++|++||+.++++|++|++++.|.++. ...|.++|+|++|+|+++|++++.++
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~   79 (341)
T cd08297           1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLK   79 (341)
T ss_pred             CceEEeeccC-CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCC
Confidence            7899998777 567999999999999999999999999999999988887643 23467899999999999999999999


Q ss_pred             CCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416          149 VGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR  201 (256)
Q Consensus       149 ~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  201 (256)
                      +||+|++..                           ...|++++|+.++.+.++++|+++++++++.+++.+.|||+++.
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~  159 (341)
T cd08297          80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALK  159 (341)
T ss_pred             CCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHH
Confidence            999998752                           02489999999999999999999999999999999999999987


Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      . .++++|++|||+|+.+++|++++++|+.+|++|++++.++++.++++++|++
T Consensus       160 ~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  212 (341)
T cd08297         160 K-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGAD  212 (341)
T ss_pred             h-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCc
Confidence            6 4899999999999888899999999999999999999999999999999975

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=8.7e-29  Score=218.97  Aligned_cols=180  Identities=31%  Similarity=0.367  Sum_probs=163.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++.+++.  .+++++.|.|.+.++|++|++.++++|+.|++...|.++...+|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   78 (334)
T PRK13771          1 MKAVILPGFKQ--GYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKP   78 (334)
T ss_pred             CeeEEEcCCCC--CcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCC
Confidence            78999987765  3888999999999999999999999999999988887665556889999999999999999999999


Q ss_pred             CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|++...                          ..|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++...
T Consensus        79 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~  158 (334)
T PRK13771         79 GDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA  158 (334)
T ss_pred             CCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc
Confidence            999998641                          148999999999999999999999999999999999999998776


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                       ++++|++|+|+|++|++|++++++|+.+|++|++++.+++++++++++
T Consensus       159 -~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~  206 (334)
T PRK13771        159 -GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY  206 (334)
T ss_pred             -CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence             899999999999889999999999999999999999999998888776

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.3e-28  Score=218.94  Aligned_cols=182  Identities=31%  Similarity=0.381  Sum_probs=166.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++.+++.+  +.+++.+.|.+.+++|+||+.++++|+.|+....|..+...+|.++|+|++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~   78 (345)
T cd08260           1 MRAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRV   78 (345)
T ss_pred             CeeEEEecCCCC--cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCC
Confidence            799999877755  888899999999999999999999999999999887665556889999999999999999999999


Q ss_pred             CCEEEE---------------------------eCCCCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          150 GDIIAY---------------------------AGGAMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       150 Gd~V~~---------------------------~~~~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      ||+|++                           +. .+|+|++|+.++..  .++++|+++++++++.+++.+.|||+++
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l  157 (345)
T cd08260          79 GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFT-HPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRAL  157 (345)
T ss_pred             CCEEEECCCCCCCCCccccCcCcccCCCCcccccC-CCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHH
Confidence            999987                           21 25899999999975  8999999999999999999999999998


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ...+++.+|++|+|+| +|++|++++++|+.+|++|++++.++++.++++++|++
T Consensus       158 ~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~  211 (345)
T cd08260         158 VHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAV  211 (345)
T ss_pred             HHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCC
Confidence            8778899999999999 79999999999999999999999999999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=1.3e-28  Score=222.80  Aligned_cols=179  Identities=24%  Similarity=0.191  Sum_probs=162.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++.   .++.+++.+++.|.| ++++|+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus         1 m~a~~~~---~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   77 (386)
T cd08283           1 MKALVWH---GKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLK   77 (386)
T ss_pred             CeeEEEe---cCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCC
Confidence            7899988   346689999999988 599999999999999999999999876655789999999999999999999999


Q ss_pred             CCCEEEEeCC----------------------------------------------CCcceeeEEEecCC--CeEECCCC
Q 036416          149 VGDIIAYAGG----------------------------------------------AMGSYAEEQILPAN--KVVPVPSS  180 (256)
Q Consensus       149 ~Gd~V~~~~~----------------------------------------------~~G~~a~~~~v~~~--~~~~ip~~  180 (256)
                      +||+|++...                                              ..|+|++|++++.+  .++++|++
T Consensus        78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~  157 (386)
T cd08283          78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDD  157 (386)
T ss_pred             CCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCC
Confidence            9999987531                                              14899999999988  89999999


Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +++++++.++..+.|||+++ ..+++++|++|+|+| +|++|++++++|+.+|+ +|++++.++++.++++++|
T Consensus       158 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~  229 (386)
T cd08283         158 LSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL  229 (386)
T ss_pred             CCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence            99999999999999999998 678999999999997 69999999999999998 5999999999999999883

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.97  E-value=1.9e-28  Score=215.76  Aligned_cols=183  Identities=26%  Similarity=0.370  Sum_probs=162.7

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||+++...+.|+.+++++.|.|.+.++||+||+.++++|+.|++.+.|.++. ...|.++|||++|+|++  .++..+++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            5788888888888999999999999999999999999999999998887532 34588999999999998  56778999


Q ss_pred             CCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc--CCCCCC-EEEEecCCChH
Q 036416          150 GDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF--KVEPGH-TVLIQAAAGGV  221 (256)
Q Consensus       150 Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~--~~~~g~-~VlI~ga~g~v  221 (256)
                      ||+|++...     ..|++++|+.+|.+.++++|+++++++++.+++.+.+||.++....  .+.+|+ +|+|+|++|++
T Consensus        79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~v  158 (323)
T TIGR02823        79 GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGV  158 (323)
T ss_pred             CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHH
Confidence            999998741     2489999999999999999999999999999999999998875443  388998 99999988999


Q ss_pred             HHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       222 G~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |.+++++|+.+|+++++++.+++++++++++|++
T Consensus       159 g~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~  192 (323)
T TIGR02823       159 GSLAVAILSKLGYEVVASTGKAEEEDYLKELGAS  192 (323)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Confidence            9999999999999999999988999999999985

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=1e-28  Score=219.55  Aligned_cols=181  Identities=27%  Similarity=0.255  Sum_probs=162.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++.+.+++   .+.+.+.|.|.| .++||+||+.++++|++|++.+.|.++...+|.++|+|++|+|+++|+++++++
T Consensus         1 ~ka~~~~~~~---~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (347)
T cd05278           1 MKALVYLGPG---KIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLK   77 (347)
T ss_pred             CceEEEecCC---ceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccC
Confidence            6888988544   488889999999 999999999999999999999988876666789999999999999999999999


Q ss_pred             CCCEEEEeC-----------------------------CCCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHH
Q 036416          149 VGDIIAYAG-----------------------------GAMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       149 ~Gd~V~~~~-----------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      +||+|++..                             ...|+|++|++++.+  .++++|+++++++++.+++.+.|||
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~  157 (347)
T cd05278          78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF  157 (347)
T ss_pred             CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhee
Confidence            999998721                             124899999999987  8999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++ ...++++|++|||.| +|++|.+++|+|+.+|+ +|++++.++++.++++++|++
T Consensus       158 ~~~-~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~  214 (347)
T cd05278         158 HGA-ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT  214 (347)
T ss_pred             ehh-hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc
Confidence            998 567899999999986 69999999999999997 888988888889999999875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.97  E-value=3e-29  Score=222.95  Aligned_cols=183  Identities=29%  Similarity=0.330  Sum_probs=163.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||++++.++ +..+++++.+.|+|+++||+|++.++++|++|++...+..+ ...|.++|||++|+|+.+|++++.+++
T Consensus         1 m~a~~~~~~~-~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (339)
T cd08249           1 QKAAVLTGPG-GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGCDFAGTVVEVGSGVTRFKV   78 (339)
T ss_pred             CceEEeccCC-CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc-cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence            7899999876 77899999999999999999999999999999987755441 124678999999999999999999999


Q ss_pred             CCEEEEeCC-------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC----------CCCCEE
Q 036416          150 GDIIAYAGG-------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV----------EPGHTV  212 (256)
Q Consensus       150 Gd~V~~~~~-------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~V  212 (256)
                      ||+|+++..       .+|+|++|+.++.+.++++|+++++++++.+++.+.|||+++....++          ++|++|
T Consensus        79 Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~v  158 (339)
T cd08249          79 GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPV  158 (339)
T ss_pred             CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEE
Confidence            999998753       248999999999999999999999999999999999999998766554          789999


Q ss_pred             EEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          213 LIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+|++|++|++++++|+.+|++|++++ +++|+++++++|++
T Consensus       159 lI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~  200 (339)
T cd08249         159 LIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGAD  200 (339)
T ss_pred             EEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCC
Confidence            9999999999999999999999999988 56889999999985

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=1.4e-28  Score=220.67  Aligned_cols=182  Identities=33%  Similarity=0.439  Sum_probs=165.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++++++.+  +++++.+.|++++++|+|++.++++|+.|+..+.|.++. .+|.++|+|++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (363)
T cd08279           1 MRAAVLHEVGKP--LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA-PLPAVLGHEGAGVVEEVGPGVTGVKP   77 (363)
T ss_pred             CeEEEEecCCCC--ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC-CCCccccccceEEEEEeCCCccccCC
Confidence            799999987654  888999999999999999999999999999998887653 46789999999999999999999999


Q ss_pred             CCEEEEeC----------------------------------------------CCCcceeeEEEecCCCeEECCCCCCH
Q 036416          150 GDIIAYAG----------------------------------------------GAMGSYAEEQILPANKVVPVPSSIDP  183 (256)
Q Consensus       150 Gd~V~~~~----------------------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~  183 (256)
                      ||+|+++.                                              ...|+|++|+.++.+.++++|+++++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          78 GDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             CCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            99999842                                              12489999999999999999999999


Q ss_pred             HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          184 VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++.+++.+.+||.++...+++++|++|+|+| +|++|++++++|+.+|++ |++++.++++.++++++|++
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~  229 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT  229 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence            999999999999999988888999999999996 699999999999999996 99999999999999999975

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.6e-28  Score=214.34  Aligned_cols=183  Identities=40%  Similarity=0.617  Sum_probs=168.5

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |++.+...+.++.+++++.+.|.|.++||+|++.++++|+.|+.+..|..+. ..+|.++|||++|+|+++|+++..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            7899998888889999999999999999999999999999999988886543 346889999999999999999999999


Q ss_pred             CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416          150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA  229 (256)
Q Consensus       150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la  229 (256)
                      ||+|.++.. .|+|++|+.++.+.++++|+++++++++.+++.+.+||+++...+++++|++|+|+|++|++|++++++|
T Consensus        82 Gd~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a  160 (331)
T cd08273          82 GDRVAALTR-VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA  160 (331)
T ss_pred             CCEEEEeCC-CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            999998753 4899999999999999999999999999999999999999988788999999999999999999999999


Q ss_pred             HHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          230 NALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       230 ~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +.+|++|++++. +++.++++++|++
T Consensus       161 ~~~g~~v~~~~~-~~~~~~~~~~g~~  185 (331)
T cd08273         161 LLAGAEVYGTAS-ERNHAALRELGAT  185 (331)
T ss_pred             HHcCCEEEEEeC-HHHHHHHHHcCCe
Confidence            999999999998 8889999999853

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=3.5e-28  Score=216.26  Aligned_cols=183  Identities=25%  Similarity=0.190  Sum_probs=163.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++.+++   .+++++.+.|+| .++||+|++.++++|+.|+..+.|.++...+|.++|||++|+|+++|++++.++
T Consensus         1 m~a~~~~~~~---~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   77 (345)
T cd08286           1 MKALVYHGPG---KISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFK   77 (345)
T ss_pred             CceEEEecCC---ceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccC
Confidence            6888888554   488899999986 899999999999999999999998776555678999999999999999999999


Q ss_pred             CCCEEEEeCC---------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416          149 VGDIIAYAGG---------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQFL  199 (256)
Q Consensus       149 ~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~~  199 (256)
                      +||+|++...                           ..|+|++|+.++.+  .++++|++++..+++.+++.+.+||.+
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  157 (345)
T cd08286          78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYEC  157 (345)
T ss_pred             CCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHH
Confidence            9999987531                           13889999999987  899999999999999999999999988


Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCCC
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +...+++++|++|+|+| +|++|.+++|+|+.+| .+|++++.+++|.++++++|+|+
T Consensus       158 ~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  214 (345)
T cd08286         158 GVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATH  214 (345)
T ss_pred             HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCc
Confidence            77778899999999988 5999999999999999 68999888889999999999863

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.9e-28  Score=218.84  Aligned_cols=182  Identities=36%  Similarity=0.481  Sum_probs=164.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc---
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG---  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~---  146 (256)
                      ||++++..++.  .+.+.+.|.|.++++||+|++.++++|++|+.+..|.++. .+|.++|||++|+|+.+|+++++   
T Consensus         1 ~~a~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~   77 (367)
T cd08263           1 MKAAVLKGPNP--PLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYG   77 (367)
T ss_pred             CeeEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCc
Confidence            68999987754  3778899999999999999999999999999998887654 46889999999999999999988   


Q ss_pred             cCCCCEEEEeC------------------------------------------------CCCcceeeEEEecCCCeEECC
Q 036416          147 RTVGDIIAYAG------------------------------------------------GAMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       147 ~~~Gd~V~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~ip  178 (256)
                      +++||+|++..                                                ...|+|++|+.++.+.++++|
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P  157 (367)
T cd08263          78 LSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLP  157 (367)
T ss_pred             CCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECC
Confidence            99999998831                                                124899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++++.+++.+++.+.|||+++...+.+++|++|+|+| +|++|++++++|+.+|++ |++++.++++.++++++|++
T Consensus       158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~  234 (367)
T cd08263         158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT  234 (367)
T ss_pred             CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence            99999999999999999999998888889999999996 799999999999999997 99999999999999999975

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.96  E-value=1.7e-28  Score=218.76  Aligned_cols=183  Identities=32%  Similarity=0.475  Sum_probs=163.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC------------CCCCCCCCCcccEEEE
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK------------PAKMPFTPGMEAVGEV  137 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~~lG~e~~G~V  137 (256)
                      |||+.+..++.+  +++++.|.|+++++||+|++.++++|++|++.+.|.++            ...+|.++|+|++|+|
T Consensus         1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   78 (350)
T cd08240           1 MKAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEV   78 (350)
T ss_pred             CeeEEeccCCCC--ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEE
Confidence            788988876644  78889999999999999999999999999999887643            1235678999999999


Q ss_pred             EEeCCCCCccCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhch
Q 036416          138 VAVGPGLTGRTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIML  191 (256)
Q Consensus       138 ~~vG~~v~~~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~  191 (256)
                      +++|++++++++||+|++++.                          ..|++++|+.++.+.++++|+++++.+++.+.+
T Consensus        79 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~  158 (350)
T cd08240          79 VAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC  158 (350)
T ss_pred             EeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence            999999999999999987621                          248999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       192 ~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+.|||+++.....+++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.+.++++|++
T Consensus       159 ~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  222 (350)
T cd08240         159 SGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD  222 (350)
T ss_pred             hhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence            9999999998877777899999997 79999999999999999 789999999999999999975

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=4.8e-28  Score=215.98  Aligned_cols=180  Identities=28%  Similarity=0.322  Sum_probs=157.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---------CCCCCCCCcccEEEEEEe
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---------AKMPFTPGMEAVGEVVAV  140 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---------~~~p~~lG~e~~G~V~~v  140 (256)
                      ||+++++++   ..+++++.+.|++.+++|+||+.++++|+.|++.+.|....         ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~---~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v   77 (350)
T cd08256           1 MRAVVCHGP---QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVEL   77 (350)
T ss_pred             CeeEEEecC---CceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEe
Confidence            789999854   45899999999999999999999999999999988875311         136778999999999999


Q ss_pred             CCCCC--ccCCCCEEEEeC----------------------------CCCcceeeEEEecCC-CeEECCCCCCHHHHhhh
Q 036416          141 GPGLT--GRTVGDIIAYAG----------------------------GAMGSYAEEQILPAN-KVVPVPSSIDPVIAASI  189 (256)
Q Consensus       141 G~~v~--~~~~Gd~V~~~~----------------------------~~~G~~a~~~~v~~~-~~~~ip~~~~~~~aa~l  189 (256)
                      |++++  ++++||+|++..                            ...|+|++|+.++.+ .++++|+++++++++.+
T Consensus        78 G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~  157 (350)
T cd08256          78 GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI  157 (350)
T ss_pred             CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh
Confidence            99999  899999998721                            135899999999988 57899999999999988


Q ss_pred             chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                       ..+.++|+++ ..+++++|++|+|.| +|++|++++++|+.+|+. ++++++++++.++++++|++
T Consensus       158 -~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  221 (350)
T cd08256         158 -EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGAD  221 (350)
T ss_pred             -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCc
Confidence             8899999998 667999999999955 799999999999999985 77788889999999999975

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3.8e-28  Score=214.12  Aligned_cols=179  Identities=34%  Similarity=0.474  Sum_probs=157.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++..++ ++.+++++.+.|+++++||+|++.++++|++|++...+.. ...+|.++|||++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (325)
T cd08264           1 MKALVFEKSG-IENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-VKPMPHIPGAEFAGVVEEVGDHVKGVKK   78 (325)
T ss_pred             CeeEEeccCC-CCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-CCCCCeecccceeEEEEEECCCCCCCCC
Confidence            6889988766 6778888888888999999999999999999998876532 2235778999999999999999999999


Q ss_pred             CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|++...                          ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.. 
T Consensus        79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-  157 (325)
T cd08264          79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-  157 (325)
T ss_pred             CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-
Confidence            999987521                          24899999999999999999999999999999999999999865 


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++++|++|+|+|++|++|++++++|+.+|++|+++++    .++++++|++
T Consensus       158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~~~g~~  205 (325)
T cd08264         158 AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLKEFGAD  205 (325)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHHHhCCC
Confidence            79999999999998899999999999999999988863    3667888875

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.96  E-value=3.4e-28  Score=219.19  Aligned_cols=179  Identities=25%  Similarity=0.176  Sum_probs=158.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++.+   ++.++++++|+|.+ +++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|+++..++
T Consensus         1 m~~~~~~~---~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~-~~p~~~g~e~~G~V~~vG~~v~~~~   76 (375)
T cd08282           1 MKAVVYGG---PGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA-EPGLVLGHEAMGEVEEVGSAVESLK   76 (375)
T ss_pred             CceEEEec---CCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC-CCCceeccccEEEEEEeCCCCCcCC
Confidence            67888874   44689999999986 7999999999999999999999887653 3688999999999999999999999


Q ss_pred             CCCEEEEeCC------------------------------------CCcceeeEEEecCC--CeEECCCCCCHH---HHh
Q 036416          149 VGDIIAYAGG------------------------------------AMGSYAEEQILPAN--KVVPVPSSIDPV---IAA  187 (256)
Q Consensus       149 ~Gd~V~~~~~------------------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~---~aa  187 (256)
                      +||+|++...                                    .+|+|++|+.+|..  .++++|++++++   +++
T Consensus        77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a  156 (375)
T cd08282          77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYL  156 (375)
T ss_pred             CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhee
Confidence            9999987211                                    13889999999976  899999999998   467


Q ss_pred             hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCC
Q 036416          188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .++..+.+||+++ ..+++++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.++++++|+
T Consensus       157 ~~~~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~  222 (375)
T cd08282         157 MLSDIFPTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA  222 (375)
T ss_pred             eecchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence            7888999999998 678999999999987 69999999999999998 79999899999999999996

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.96  E-value=2.6e-28  Score=217.17  Aligned_cols=185  Identities=31%  Similarity=0.403  Sum_probs=162.7

Q ss_pred             eEEEEEcccCCCC-ceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCC---------------CCCCCCCCCcc
Q 036416           70 VKAIRVYEHGDPE-VLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYK---------------PAKMPFTPGME  132 (256)
Q Consensus        70 ~~a~~~~~~~~~~-~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~~lG~e  132 (256)
                      |||+++++++.++ .+.+++.+.|+| +++||+|++.++++|+.|+++..|...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            7889988877753 478889999999 599999999999999999998877421               23468899999


Q ss_pred             cEEEEEEeCCCCCccCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC--
Q 036416          133 AVGEVVAVGPGLTGRTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP--  208 (256)
Q Consensus       133 ~~G~V~~vG~~v~~~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~--  208 (256)
                      ++|+|+++|+++.++++||+|++...  ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...+.+.+  
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  160 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKN  160 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCcc
Confidence            99999999999999999999998752  24899999999999999999999999999999999999999888777754  


Q ss_pred             --CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          209 --GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       209 --g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                        |++|+|+|++|++|++++++|+.+|++|++++.+ ++.+.++++|++
T Consensus       161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~  208 (350)
T cd08248         161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGAD  208 (350)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCc
Confidence              9999999999999999999999999999988865 677888888874

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=4.5e-28  Score=215.16  Aligned_cols=181  Identities=29%  Similarity=0.412  Sum_probs=161.8

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG  150 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G  150 (256)
                      |++..++.+  .++++.+++.|.|.++||+||+.++++|++|++.+.|......+|.++|||++|+|+++|++++++++|
T Consensus         1 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (337)
T cd05283           1 KGYAARDAS--GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVG   78 (337)
T ss_pred             CceEEecCC--CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCC
Confidence            356666554  569999999999999999999999999999999998876555578999999999999999999999999


Q ss_pred             CEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHH
Q 036416          151 DIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA  196 (256)
Q Consensus       151 d~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta  196 (256)
                      |+|++..                                  ...|+|++|+.++.+.++++|+++++++++.+.+.+.+|
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta  158 (337)
T cd05283          79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITV  158 (337)
T ss_pred             CEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHH
Confidence            9997420                                  225899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |+++... .+++|++|+|.| +|++|++++++|+.+|++|+++++++++.++++++|++
T Consensus       159 ~~~~~~~-~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~  215 (337)
T cd05283         159 YSPLKRN-GVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGAD  215 (337)
T ss_pred             HHHHHhc-CCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc
Confidence            9998664 689999999987 79999999999999999999999999999999999976

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=6.5e-28  Score=213.86  Aligned_cols=180  Identities=32%  Similarity=0.364  Sum_probs=160.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+.++.+   +.+++.+.+.|++.++||+|+|.++++|+.|+.+..|..+...+|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~   77 (337)
T cd08261           1 MKALVCEKP---GRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKV   77 (337)
T ss_pred             CeEEEEeCC---CceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCC
Confidence            688888854   45889999999999999999999999999999998887655556789999999999999999999999


Q ss_pred             CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|++..                          ...|+|++|+.++.+ ++++|+++++++++.+ ..+.++++++ ..
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~  154 (337)
T cd08261          78 GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RR  154 (337)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-Hh
Confidence            99998731                          125899999999999 9999999999999876 6778888887 67


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++|++|||+| +|++|.+++|+|+.+|++|++++.++++.++++++|+++
T Consensus       155 ~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~  206 (337)
T cd08261         155 AGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADD  206 (337)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCE
Confidence            7999999999997 699999999999999999999999999999999998763

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3.6e-28  Score=215.70  Aligned_cols=179  Identities=25%  Similarity=0.276  Sum_probs=156.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-----------CCCCCCCCCcccEEEEE
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-----------PAKMPFTPGMEAVGEVV  138 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~~lG~e~~G~V~  138 (256)
                      ||++++..+    .+++++.+.|+++++||+|++.++++|+.|++...|...           ...+|.++|+|++|+|+
T Consensus         1 m~a~~~~~~----~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~   76 (341)
T cd08262           1 MRAAVFRDG----PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVV   76 (341)
T ss_pred             CceEEEeCC----ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEE
Confidence            688888744    588899999999999999999999999999999887321           22357889999999999


Q ss_pred             EeCCCCCc-cCCCCEEEEeCC----------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416          139 AVGPGLTG-RTVGDIIAYAGG----------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR  201 (256)
Q Consensus       139 ~vG~~v~~-~~~Gd~V~~~~~----------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  201 (256)
                      ++|+++++ +++||+|++++.                ..|+|++|+.++.+.++++|+++++++++ ++..+.+||+++ 
T Consensus        77 ~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-  154 (341)
T cd08262          77 DYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-  154 (341)
T ss_pred             EeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-
Confidence            99999997 999999998731                25899999999999999999999999877 667888999885 


Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ..+++++|++|||+| +|++|.+++|+|+.+|++ +++++.++++.++++++|++
T Consensus       155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  208 (341)
T cd08262         155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGAD  208 (341)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc
Confidence            667999999999997 599999999999999996 66777788999999999975

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.96  E-value=3.6e-28  Score=213.51  Aligned_cols=179  Identities=36%  Similarity=0.555  Sum_probs=161.9

Q ss_pred             cccCCCC--ceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCCCCE
Q 036416           76 YEHGDPE--VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTVGDI  152 (256)
Q Consensus        76 ~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~  152 (256)
                      +.++.+.  .+++++.+.|.+.+++|+|++.++++|+.|...+.|.+.. ..+|.++|||++|+|+++|++++.+++||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~   83 (323)
T cd05282           4 TQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQR   83 (323)
T ss_pred             CcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCE
Confidence            4445554  7888888999999999999999999999999988776543 346789999999999999999999999999


Q ss_pred             EEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc
Q 036416          153 IAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL  232 (256)
Q Consensus       153 V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~  232 (256)
                      |+++.. .|+|++|+.++...++++|+++++.+++.+++.+.+||+++...+.+.+|++|+|+|++|++|++++++|+.+
T Consensus        84 V~~~~~-~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~  162 (323)
T cd05282          84 VLPLGG-EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLL  162 (323)
T ss_pred             EEEeCC-CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHC
Confidence            999762 2899999999999999999999999999999999999999988888999999999998899999999999999


Q ss_pred             CCeEEEEeCChhhHHHHHhCCCC
Q 036416          233 GATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       233 ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |+++++++++++++++++++|++
T Consensus       163 g~~v~~~~~~~~~~~~~~~~g~~  185 (323)
T cd05282         163 GFKTINVVRRDEQVEELKALGAD  185 (323)
T ss_pred             CCeEEEEecChHHHHHHHhcCCC
Confidence            99999999999999999999985

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.96  E-value=8.2e-28  Score=210.08  Aligned_cols=186  Identities=35%  Similarity=0.563  Sum_probs=169.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++.+..++.+..+.+.+++.|.+.+++|+|++.++++|++|+....|..+. ...|.++|||++|+|+++|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            67888887776777888999999999999999999999999999988776542 44688999999999999999999999


Q ss_pred             CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +||+|++...    ..|++++|+.++.+.++++|+++++++++.+++.+.+||+++...+++.+|++|+|+|++|++|++
T Consensus        81 ~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~  160 (325)
T cd08253          81 VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHA  160 (325)
T ss_pred             CCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHH
Confidence            9999998752    248999999999999999999999999999999999999999887899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++++.+|++|+++++++++.++++++|++
T Consensus       161 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  191 (325)
T cd08253         161 AVQLARWAGARVIATASSAEGAELVRQAGAD  191 (325)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999988875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.96  E-value=1.2e-27  Score=212.38  Aligned_cols=180  Identities=33%  Similarity=0.375  Sum_probs=159.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++.+++++   .+.+++.+.|++.+++|+|++.++++|+.|+.+..|.++....|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~   77 (343)
T cd08235           1 MKAAVLHGPN---DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKV   77 (343)
T ss_pred             CeEEEEecCC---ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCC
Confidence            6889998654   4888999999999999999999999999999998886643345779999999999999999999999


Q ss_pred             CCEEEEeCC--------------------------CCcceeeEEEecCCC-----eEECCCCCCHHHHhhhchhHHHHHH
Q 036416          150 GDIIAYAGG--------------------------AMGSYAEEQILPANK-----VVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~-----~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      ||+|++...                          ..|+|++|+.++...     ++++|+++++.+++.+ ..+.+||+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~  156 (343)
T cd08235          78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCIN  156 (343)
T ss_pred             CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHH
Confidence            999998621                          358999999999988     9999999999999765 78899999


Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++.. .++++|++|+|+| +|++|.+++|+|+..|++ |++++.++++.++++++|++
T Consensus       157 ~l~~-~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~  212 (343)
T cd08235         157 AQRK-AGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD  212 (343)
T ss_pred             HHHh-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            9865 4899999999997 699999999999999998 99999999999998888875

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.96  E-value=1e-27  Score=209.13  Aligned_cols=185  Identities=40%  Similarity=0.555  Sum_probs=168.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++.+.+.++.+.+.+.+.|.+.+++|+||+.++++|+.|++...|.++. ...|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            79999998877888888888888889999999999999999999988776543 34578999999999999999999999


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      +||+|+++.. +|+|++|+.++.+.++++|+++++.+++.++..+.++|+++...+.+.+|++|+|+|++|++|++++++
T Consensus        81 ~Gd~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~  159 (323)
T cd05276          81 VGDRVCALLA-GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQL  159 (323)
T ss_pred             CCCEEEEecC-CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHH
Confidence            9999998753 489999999999999999999999999999999999999988888899999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++..|++|+++++++++.++++++|++
T Consensus       160 ~~~~g~~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd05276         160 AKALGARVIATAGSEEKLEACRALGAD  186 (323)
T ss_pred             HHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence            999999999999998999999888864

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.5e-27  Score=210.35  Aligned_cols=185  Identities=38%  Similarity=0.495  Sum_probs=167.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||++++..+.++.+++++.+.|.++++|++|++.++++|++|++...|.++. ...|.++|||++|+|+++|+++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            78999998877778999888888899999999999999999999988876543 33678999999999999999999999


Q ss_pred             CCCEEEEeCC--------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC
Q 036416          149 VGDIIAYAGG--------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP  208 (256)
Q Consensus       149 ~Gd~V~~~~~--------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  208 (256)
                      +||+|++...                    .+|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++...+.+++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  160 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKP  160 (336)
T ss_pred             CCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCC
Confidence            9999998651                    14889999999999999999999999999999999999999988889999


Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |++|+|+| +|++|++++++|+.+|++|++++.++++.++++++|++
T Consensus       161 g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~  206 (336)
T cd08276         161 GDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGAD  206 (336)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            99999996 79999999999999999999999999999999888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.96  E-value=1.2e-27  Score=212.58  Aligned_cols=180  Identities=27%  Similarity=0.271  Sum_probs=160.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCC-CCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPG-EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++..+   +.++++++++|+|. ++||+|++.++++|+.|++...|.++. .+|.++|+|++|+|+++|++++.++
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~   76 (344)
T cd08284           1 MKAVVFKGP---GDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS-TPGFVLGHEFVGEVVEVGPEVRTLK   76 (344)
T ss_pred             CeeEEEecC---CCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC-CCCcccccceEEEEEeeCCCccccC
Confidence            678888743   46899999999985 999999999999999999988887653 3578999999999999999999999


Q ss_pred             CCCEEEEeCC------------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHH
Q 036416          149 VGDIIAYAGG------------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTA  196 (256)
Q Consensus       149 ~Gd~V~~~~~------------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta  196 (256)
                      +||+|++...                              .+|+|++|+.++.+  .++++|+++++++++.+++.+.||
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta  156 (344)
T cd08284          77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTG  156 (344)
T ss_pred             CCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHH
Confidence            9999997531                              14899999999975  999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |+++.. +++++|++|+|+| +|++|++++++|+.+|+ +|++++.+++|.++++++|++
T Consensus       157 ~~~~~~-~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~  214 (344)
T cd08284         157 YFGAKR-AQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE  214 (344)
T ss_pred             HhhhHh-cCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence            999865 7899999999997 79999999999999997 899998888999999999963

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.2e-27  Score=208.25  Aligned_cols=183  Identities=29%  Similarity=0.410  Sum_probs=160.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||+++.++. .+..+.+++++.|.+.+++|+|++.++++|+.|++...|.+.....|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   79 (306)
T cd08258           1 MKALVKTGP-GPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKV   79 (306)
T ss_pred             CeeEEEecC-CCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCC
Confidence            578888763 3466999999999999999999999999999999988887643345789999999999999999999999


Q ss_pred             CCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||+|++...                           ..|+|++|++++...++++|+++++++++ ++..+.++|+++..
T Consensus        80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~  158 (306)
T cd08258          80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAE  158 (306)
T ss_pred             CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHH
Confidence            999998642                           24899999999999999999999999886 77888999999988


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe--CChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV--STKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~--~~~~~~~~~~~~Ga~  255 (256)
                      .+++++|++|+|.| +|++|.+++|+|+.+|++|+.++  .++++.+.++++|++
T Consensus       159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~  212 (306)
T cd08258         159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD  212 (306)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCc
Confidence            88999999999977 79999999999999999988773  345678888999985

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=1.6e-27  Score=210.56  Aligned_cols=184  Identities=37%  Similarity=0.480  Sum_probs=166.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++.+..++.+. +.+.+.+.|.+++++|+|++.++++|+.|+....|.++ ...+|.++|+|++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~   79 (338)
T cd08254           1 MKAWRFHKGSKGL-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFK   79 (338)
T ss_pred             CeeEEEecCCCCc-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCC
Confidence            7899999888776 77888888999999999999999999999999888765 234577899999999999999999999


Q ss_pred             CCCEEEE------------------eC--------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          149 VGDIIAY------------------AG--------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       149 ~Gd~V~~------------------~~--------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      +||+|++                  +.        ...|+|++|+.++.+.++++|+++++++++.++..+.|||+++..
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~  159 (338)
T cd08254          80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVR  159 (338)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence            9999986                  11        114899999999999999999999999999999999999999988


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ..+++++++|||.| +|++|++++++|+.+|++|++++.++++.+.++++|++
T Consensus       160 ~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~  211 (338)
T cd08254         160 AGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD  211 (338)
T ss_pred             ccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence            88899999999986 69999999999999999999999999999999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.4e-27  Score=207.62  Aligned_cols=185  Identities=37%  Similarity=0.479  Sum_probs=167.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||+++++.++.++.+.+++.+.|.+.+++|+|++.++++|++|+....|.... ...|.++|||++|+|+.+|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            78999998888878888888888889999999999999999999988776432 23577899999999999999999999


Q ss_pred             CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +||+|+++..    ..|+|++|+.++...++++|+++++.+++.+++.+.+||+++....++++|++++|+|++|++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~  160 (326)
T cd08272          81 VGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHV  160 (326)
T ss_pred             CCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHH
Confidence            9999998751    248999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++|+.+|++|++++.+ ++.++++++|++
T Consensus       161 ~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~  190 (326)
T cd08272         161 AVQLAKAAGARVYATASS-EKAAFARSLGAD  190 (326)
T ss_pred             HHHHHHHcCCEEEEEech-HHHHHHHHcCCC
Confidence            999999999999999988 889999888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.8e-27  Score=208.15  Aligned_cols=174  Identities=28%  Similarity=0.286  Sum_probs=151.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++.++   ..+++++++.|+++++||+||+.++++|++|++...|.++   .|.++|||++|+|+++|++   +++
T Consensus         1 ~~a~~~~~~---~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~   71 (319)
T cd08242           1 MKALVLDGG---LDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELV   71 (319)
T ss_pred             CeeEEEeCC---CcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCC
Confidence            689999854   3599999999999999999999999999999999888654   5789999999999999988   679


Q ss_pred             CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||+|....                           ..+|+|++|++++.+.++++|+++++++++.+ ....++|..+ .
T Consensus        72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~  149 (319)
T cd08242          72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-E  149 (319)
T ss_pred             CCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence            99996421                           12589999999999999999999999988753 3444555554 6


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ..++++|++|+|+| +|++|++++|+|+.+|++|++++.++++.++++++|++
T Consensus       150 ~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~  201 (319)
T cd08242         150 QVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVE  201 (319)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc
Confidence            67899999999997 79999999999999999999999999999999999986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=3.8e-27  Score=205.17  Aligned_cols=183  Identities=56%  Similarity=0.956  Sum_probs=165.5

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG  150 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G  150 (256)
                      +|+.....+.+..+.+.+.+.|.+.++||+|++.++++|+.|++...+..+. .+|.++|||++|+|+.+|+++.++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            4666776666777888888877889999999999999999999998876643 357789999999999999999999999


Q ss_pred             CEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHH
Q 036416          151 DIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWAN  230 (256)
Q Consensus       151 d~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~  230 (256)
                      |+|+++. ..|++++|+.++.+.++++|+++++.+++.+++.+.++|+++...+++++|++|+|+|++|++|++++++|+
T Consensus        80 ~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~  158 (320)
T cd05286          80 DRVAYAG-PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAK  158 (320)
T ss_pred             CEEEEec-CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence            9999876 138999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          231 ALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       231 ~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+|++|++++.++++.++++++|++
T Consensus       159 ~~g~~v~~~~~~~~~~~~~~~~g~~  183 (320)
T cd05286         159 ALGATVIGTVSSEEKAELARAAGAD  183 (320)
T ss_pred             HcCCEEEEEcCCHHHHHHHHHCCCC
Confidence            9999999999999999999999975

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=3e-27  Score=209.94  Aligned_cols=179  Identities=34%  Similarity=0.449  Sum_probs=159.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++++++   .+.+++.+.|+++++||+||+.++++|+.|+..+.|.+.. ..|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~---~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~   76 (343)
T cd08236           1 MKALVLTGPG---DLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAV   76 (343)
T ss_pred             CeeEEEecCC---ceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCC
Confidence            6899998654   4888999999999999999999999999999988776532 35788999999999999999999999


Q ss_pred             CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|+++.                          ...|+|++|+.+|.+.++++|+++++++++.+ ..+.+||+++. .
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~  154 (343)
T cd08236          77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-L  154 (343)
T ss_pred             CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-h
Confidence            99999862                          13589999999999999999999999999877 67889999986 6


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++++|++|+|+| +|.+|.+++|+|+.+|++ |++++.++++.++++++|++
T Consensus       155 ~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~  206 (343)
T cd08236         155 AGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD  206 (343)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence            7899999999997 699999999999999997 99999999999999989874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=6.2e-27  Score=206.32  Aligned_cols=186  Identities=38%  Similarity=0.570  Sum_probs=166.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++...+.+..+.+.+.+.|.+.+++|+|++.++++|++|++.+.|..+. ...|.++|||++|+|+.+|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            68899887777778888888888899999999999999999999998886542 24578999999999999999999999


Q ss_pred             CCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          149 VGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       149 ~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      +||+|++...                          ..|++++|+.++.+.++++|+++++++++.+++.+.+||+++..
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~  160 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVT  160 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence            9999998631                          24889999999999999999999999999999999999999888


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ..++++|++++|+|+++++|++++++++..|++|+.+++++++.+.++++|++
T Consensus       161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  213 (342)
T cd08266         161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGAD  213 (342)
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            88999999999999988999999999999999999999999898888877753

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=4.3e-27  Score=208.00  Aligned_cols=179  Identities=34%  Similarity=0.432  Sum_probs=159.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++.+++   .+++.+.+.|++.++||+||+.++++|+.|+....|.++.. +|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~---~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~-~p~~~g~~~~G~v~~vG~~v~~~~~   76 (334)
T cd08234           1 MKALVYEGPG---ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHEFAGVVVAVGSKVTGFKV   76 (334)
T ss_pred             CeeEEecCCC---ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC-CCcccccceEEEEEEeCCCCCCCCC
Confidence            6899998654   58889999999999999999999999999999998876543 7889999999999999999999999


Q ss_pred             CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      ||+|++..                          ...|+|++|+.++.+.++++|+++++.+++.+ ..+.++++++ ..
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~  154 (334)
T cd08234          77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DL  154 (334)
T ss_pred             CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-Hh
Confidence            99998721                          12589999999999999999999999998765 7788899888 67


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++++|++|+|+| +|++|.+++++|+.+|++ |++++.++++.++++++|++
T Consensus       155 ~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  206 (334)
T cd08234         155 LGIKPGDSVLVFG-AGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT  206 (334)
T ss_pred             cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence            8999999999997 699999999999999997 89999999999999988874

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=8.3e-27  Score=204.50  Aligned_cols=185  Identities=37%  Similarity=0.498  Sum_probs=165.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ||++++.+++..+.+.+++.+.|++.+++|+|++.++++|+.|+....+.......|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            78999997664346999999999999999999999999999999988776543334778999999999999999999999


Q ss_pred             CCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          150 GDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       150 Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ||+|.+...  ..|+|++|+.++.+.++++|+++++.+++.+++.+.+|++++...+++++|++|+|+|++|++|+++++
T Consensus        81 Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~  160 (325)
T cd08271          81 GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQ  160 (325)
T ss_pred             CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence            999998752  248999999999999999999999999999999999999999888899999999999988999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+..|++|+++. ++++.++++++|++
T Consensus       161 ~a~~~g~~v~~~~-~~~~~~~~~~~g~~  187 (325)
T cd08271         161 LAKRAGLRVITTC-SKRNFEYVKSLGAD  187 (325)
T ss_pred             HHHHcCCEEEEEE-cHHHHHHHHHcCCc
Confidence            9999999999887 67788888888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.95  E-value=7.5e-27  Score=206.24  Aligned_cols=181  Identities=34%  Similarity=0.532  Sum_probs=161.9

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG  150 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G  150 (256)
                      |++++.++|.  .+++++.|.|.+.+++|+|++.++++|+.|++.+.|.++...+|.++|||++|+|+++|++++++++|
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~G   78 (330)
T cd08245           1 KAAVVHAAGG--PLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVG   78 (330)
T ss_pred             CeEEEecCCC--CceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccC
Confidence            5678876643  58889999999999999999999999999999998876555578899999999999999999999999


Q ss_pred             CEEEEeC-------------------------C--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416          151 DIIAYAG-------------------------G--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       151 d~V~~~~-------------------------~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      |+|+...                         .  ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.. 
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-  157 (330)
T cd08245          79 DRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-  157 (330)
T ss_pred             CEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-
Confidence            9998421                         1  25899999999999999999999999999999999999999866 


Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .++++|++|+|+| +|++|++++++|+.+|++|+++++++++.++++++|++
T Consensus       158 ~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~  208 (330)
T cd08245         158 AGPRPGERVAVLG-IGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD  208 (330)
T ss_pred             hCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc
Confidence            6899999999997 68899999999999999999999999999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.95  E-value=7e-27  Score=208.51  Aligned_cols=184  Identities=24%  Similarity=0.228  Sum_probs=154.8

Q ss_pred             EEEEEcccCCCCceEEEEeeCCC-CCCCeEEEEEeEEeeChhhhHhHhCCCCCCC-CCCCCCcccEEEEEEeCCCCC-cc
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFTPGMEAVGEVVAVGPGLT-GR  147 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-~p~~lG~e~~G~V~~vG~~v~-~~  147 (256)
                      |++++.+++++..++..+.|.|. +++++|+|++.++++|++|+....+...... .|.++|+|++|+|+++|++++ .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            67888888877555555555554 4999999999999999999988765332222 377899999999999999998 89


Q ss_pred             CCCCEEEEeCC----CCcceeeEEEecCC----CeEECCCCCCHHHHhhhchhHHHHHHHHHHHc-CCCCCCEEEEecCC
Q 036416          148 TVGDIIAYAGG----AMGSYAEEQILPAN----KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAA  218 (256)
Q Consensus       148 ~~Gd~V~~~~~----~~G~~a~~~~v~~~----~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~ga~  218 (256)
                      ++||+|++...    ..|+|++|++++..    .++++|+++++++++.+++.+.|||+++.... ++++|++|+|+|++
T Consensus        82 ~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~  161 (352)
T cd08247          82 KVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGS  161 (352)
T ss_pred             CCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCC
Confidence            99999998752    24899999999987    78999999999999999999999999998877 79999999999998


Q ss_pred             ChHHHHHHHHHHHcC-C-eEEEEeCChhhHHHHHhCCCC
Q 036416          219 GGVGSLLCQWANALG-A-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       219 g~vG~~ai~la~~~g-a-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |++|.+++++|+.+| . .|+++.. +++.++++++|++
T Consensus       162 ~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~~~g~~  199 (352)
T cd08247         162 TSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNKKLGAD  199 (352)
T ss_pred             chHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHHHhCCC
Confidence            999999999999984 5 5777665 5566788999985

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.4e-26  Score=202.80  Aligned_cols=186  Identities=40%  Similarity=0.582  Sum_probs=167.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++.++..+.++.+.+.+.+.|.+++++++|++.++++|+.|+....+.... ..+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            68888887777778888888888889999999999999999999887775432 23477899999999999999999999


Q ss_pred             CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +||+|.++..    ..|++++|+.++.+.++++|+++++++++.+++.+.++|.++.....+.++++|+|+|++|++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~  160 (328)
T cd08268          81 VGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLA  160 (328)
T ss_pred             CCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHH
Confidence            9999998743    348999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++++..|++++.++.++++.++++++|++
T Consensus       161 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~  191 (328)
T cd08268         161 AIQIANAAGATVIATTRTSEKRDALLALGAA  191 (328)
T ss_pred             HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999988888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.95  E-value=1.1e-26  Score=206.36  Aligned_cols=181  Identities=29%  Similarity=0.320  Sum_probs=152.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---CCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---KPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++.+++  +.+++.+.|.|.|+++||+||+.++++|++|++++.+..   ....+|.++|||++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~--~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~   78 (341)
T PRK05396          1 MKALVKLKAE--PGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTG   78 (341)
T ss_pred             CceEEEecCC--CceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCc
Confidence            6889998755  458999999999999999999999999999999876632   12236779999999999999999999


Q ss_pred             cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      +++||+|++...                          .+|+|++|+.++.+.++++|+++++++++.+ ..+.++++++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~  157 (341)
T PRK05396         79 FKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTA  157 (341)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHH
Confidence            999999987621                          2589999999999999999999999888744 5556665554


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ..  ...+|++|+|+| +|++|++++|+|+.+|+ +|++++.++++.++++++|+|+
T Consensus       158 ~~--~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~  211 (341)
T PRK05396        158 LS--FDLVGEDVLITG-AGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR  211 (341)
T ss_pred             Hc--CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            32  346899999987 69999999999999999 6888888899999999999863

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.95  E-value=1.4e-26  Score=205.83  Aligned_cols=181  Identities=24%  Similarity=0.237  Sum_probs=152.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||+++++++   +.+++++.|.|.| +++||+||+.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++..++
T Consensus         1 m~~~~~~~~---~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~   76 (345)
T cd08287           1 MRATVIHGP---GDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVK   76 (345)
T ss_pred             CceeEEecC---CceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccC
Confidence            688999854   4588999999986 8999999999999999999988887653 3578999999999999999999999


Q ss_pred             CCCEEEEe-CC-------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHh-----hhchhHHH
Q 036416          149 VGDIIAYA-GG-------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAA-----SIMLKGMT  195 (256)
Q Consensus       149 ~Gd~V~~~-~~-------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa-----~l~~~~~t  195 (256)
                      +||+|++. ..                         ..|+|++|+.++.+  .++++|++++++.+.     ++...+.+
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~  156 (345)
T cd08287          77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGT  156 (345)
T ss_pred             CCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHH
Confidence            99999872 11                         13899999999975  899999999883221     22356888


Q ss_pred             HHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       196 a~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ||+++. .+++++|++|+|+| +|++|++++|+|+.+|++ ++++++++++.++++++|+++
T Consensus       157 a~~~~~-~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~  216 (345)
T cd08287         157 GHHAAV-SAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATD  216 (345)
T ss_pred             HHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCce
Confidence            998875 57899999999987 799999999999999995 888888888899999999853

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.95  E-value=1.4e-26  Score=201.06  Aligned_cols=185  Identities=42%  Similarity=0.608  Sum_probs=164.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      |+++.+..++..+.+.+++.+.|.++++||+|++.++++|+.|+....|...   ....|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            6788888877766677888888888999999999999999999998877642   2345789999999999999999999


Q ss_pred             cCCCCEEEEeC--CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          147 RTVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       147 ~~~Gd~V~~~~--~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +++||+|+++.  +..|+|++|+.++...++++|+++++..++.+++.+.++|+++.....+.+|++|+|+|++|++|++
T Consensus        81 ~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~  160 (309)
T cd05289          81 FKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSF  160 (309)
T ss_pred             CCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHH
Confidence            99999999876  1238999999999999999999999999999999999999999887779999999999988999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++++++..|++|++++.++ +.++++++|++
T Consensus       161 ~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~  190 (309)
T cd05289         161 AVQLAKARGARVIATASAA-NADFLRSLGAD  190 (309)
T ss_pred             HHHHHHHcCCEEEEEecch-hHHHHHHcCCC
Confidence            9999999999999998877 88888888864

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.95  E-value=7.6e-27  Score=207.09  Aligned_cols=186  Identities=32%  Similarity=0.442  Sum_probs=153.1

Q ss_pred             eEEEEEcc-cCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCC----CCCCCCCcccEEE---EEEeC
Q 036416           70 VKAIRVYE-HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA----KMPFTPGMEAVGE---VVAVG  141 (256)
Q Consensus        70 ~~a~~~~~-~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~~lG~e~~G~---V~~vG  141 (256)
                      ++.+.+.. .+.+.....++.++|.|.+++++|++.++++|+.|+.++.|.....    .+|.+++.++.|+   +...|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g   84 (347)
T KOG1198|consen    5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG   84 (347)
T ss_pred             cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence            34444444 4444555666889999999999999999999999999999987653    4675555554444   44455


Q ss_pred             -CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc------CCCCCCEEEE
Q 036416          142 -PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF------KVEPGHTVLI  214 (256)
Q Consensus       142 -~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~VlI  214 (256)
                       ..+..+..||.+..... .|+|+||+++|...++++|+++++++||+++.++.|||.++...+      ++++|++|||
T Consensus        85 ~~~~~~~~~g~~~~~~~~-~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv  163 (347)
T KOG1198|consen   85 DDVVGGWVHGDAVVAFLS-SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLV  163 (347)
T ss_pred             cccccceEeeeEEeeccC-CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEE
Confidence             33445777777665544 599999999999999999999999999999999999999999998      8999999999


Q ss_pred             ecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          215 QAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       215 ~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +||+|++|++++|+|+..|+..++++.++++.+++|++|||+
T Consensus       164 ~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~  205 (347)
T KOG1198|consen  164 LGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADE  205 (347)
T ss_pred             EeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcE
Confidence            999999999999999999976666666689999999999985

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=2.6e-26  Score=200.84  Aligned_cols=180  Identities=38%  Similarity=0.494  Sum_probs=159.4

Q ss_pred             EcccCCCCce--EEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           75 VYEHGDPEVL--KWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        75 ~~~~~~~~~l--~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      ++..++++++  ++.+.+.|++.++||+|++.++++|+.|++...|..+.   ...|..+|||++|+|+++|+++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~   82 (319)
T cd08267           3 YTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKV   82 (319)
T ss_pred             eCCCCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCC
Confidence            4455666665  77888999999999999999999999999988776521   224678999999999999999999999


Q ss_pred             CCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          150 GDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       150 Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ||+|++...  ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++....++++|++|+|+|++|++|+++++
T Consensus        83 Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~  162 (319)
T cd08267          83 GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ  162 (319)
T ss_pred             CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            999998752  358999999999999999999999999999999999999999888789999999999988999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+.+|++|++++.+ ++.++++++|++
T Consensus       163 la~~~g~~v~~~~~~-~~~~~~~~~g~~  189 (319)
T cd08267         163 IAKALGAHVTGVCST-RNAELVRSLGAD  189 (319)
T ss_pred             HHHHcCCEEEEEeCH-HHHHHHHHcCCC
Confidence            999999999999875 888899999974

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.95  E-value=5.1e-26  Score=198.92  Aligned_cols=185  Identities=37%  Similarity=0.498  Sum_probs=166.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |+++.+...+.+..+.+++.+.|.+++++++|++.++++|+.|+....+.++. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            67888887777777888887777789999999999999999999988775543 23578999999999999999999999


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      +||+|+++.. +|++++|+.++...++++|+++++.+++.++..+.++|+++.....+++|++|+|+|++|++|.+++++
T Consensus        81 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~  159 (325)
T TIGR02824        81 VGDRVCALVA-GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQL  159 (325)
T ss_pred             CCCEEEEccC-CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHH
Confidence            9999998743 389999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++.+|++|+++++++++.++++++|++
T Consensus       160 a~~~g~~v~~~~~~~~~~~~~~~~g~~  186 (325)
T TIGR02824       160 AKAFGARVFTTAGSDEKCAACEALGAD  186 (325)
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence            999999999999999988888888864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.95  E-value=3.6e-26  Score=205.03  Aligned_cols=181  Identities=26%  Similarity=0.301  Sum_probs=149.8

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      |+++.+.   .++.+++++.+.|.+.++||+||+.++++|++|++...+...   ...+|.++|||++|+|+++|+++++
T Consensus        18 ~~~~~~~---~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   94 (364)
T PLN02702         18 NMAAWLV---GVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH   94 (364)
T ss_pred             cceEEEe---cCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence            4444444   334588888888989999999999999999999998876321   1225778999999999999999999


Q ss_pred             cCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416          147 RTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFL  199 (256)
Q Consensus       147 ~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~  199 (256)
                      |++||+|++..                           ..+|+|++|+.++...++++|+++++++++.. ..+.++|++
T Consensus        95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~  173 (364)
T PLN02702         95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHA  173 (364)
T ss_pred             CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHH
Confidence            99999998621                           11489999999999999999999999988752 234457777


Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      + ...++.+|++|+|+| +|++|++++++|+.+|++ |++++.+++|.++++++|+++
T Consensus       174 ~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  229 (364)
T PLN02702        174 C-RRANIGPETNVLVMG-AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADE  229 (364)
T ss_pred             H-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            7 667899999999997 699999999999999995 777888888999999999863

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.95  E-value=3.7e-26  Score=203.30  Aligned_cols=177  Identities=33%  Similarity=0.369  Sum_probs=151.6

Q ss_pred             EEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCC--CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           73 IRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKP--AKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      +.+++.   ..+.+++.+.|.+.++||+|++.++++|+.|++.+.+. ...  ..+|.++|+|++|+|+++|++++++++
T Consensus         2 ~~~~~~---~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~   78 (343)
T cd05285           2 AVLHGP---GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKV   78 (343)
T ss_pred             ceEecC---CceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCC
Confidence            455633   45888999999999999999999999999999876432 111  235778999999999999999999999


Q ss_pred             CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||+|++..                           ...|+|++|++++.+.++++|+++++++++.+ ..+.+||+++ .
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~  156 (343)
T cd05285          79 GDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-R  156 (343)
T ss_pred             CCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence            99998621                           12489999999999999999999999998876 5778899887 6


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+++++|++|+|+| +|++|++++|+|+.+|++ |+++++++++.++++++|++
T Consensus       157 ~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~  209 (343)
T cd05285         157 RAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGAT  209 (343)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc
Confidence            78999999999987 699999999999999997 99999999999999999986

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=6.8e-26  Score=204.89  Aligned_cols=181  Identities=24%  Similarity=0.183  Sum_probs=152.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC------C-CCCCCCCCCcccEEEEEEeCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY------K-PAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +...++...    .+++++.|.|+++++||+|++.++++|++|++.+.+..      + ...+|.++|||++|+|+++|+
T Consensus        29 ~~~~~~~~~----~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~  104 (384)
T cd08265          29 LGSKVWRYP----ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK  104 (384)
T ss_pred             ceeEEEeCC----CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence            455555532    38999999999999999999999999999998876321      1 134678999999999999999


Q ss_pred             CCCccCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCC-------CCHHHHhhh
Q 036416          143 GLTGRTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSS-------IDPVIAASI  189 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~-------~~~~~aa~l  189 (256)
                      +++.+++||+|++..                          ...|+|++|+.++...++++|+.       ++++ ++++
T Consensus       105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~  183 (384)
T cd08265         105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGAL  183 (384)
T ss_pred             CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-Hhhh
Confidence            999999999998621                          11589999999999999999986       3455 5567


Q ss_pred             chhHHHHHHHHHHH-cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          190 MLKGMTAQFLLRRC-FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       190 ~~~~~ta~~~l~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +..+.+||+++... +++++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.+.++++|+++
T Consensus       184 ~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~  251 (384)
T cd08265         184 VEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADY  251 (384)
T ss_pred             hhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            78889999998665 6899999999996 69999999999999999 7999999988999999999853

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.95  E-value=6.5e-26  Score=201.07  Aligned_cols=173  Identities=31%  Similarity=0.420  Sum_probs=149.2

Q ss_pred             CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh-CCCCC--CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEe
Q 036416           80 DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-GVYKP--AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYA  156 (256)
Q Consensus        80 ~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~  156 (256)
                      +++.+.+++.+.|.++++||+||+.++++|++|++... |....  ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus         5 ~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~   84 (339)
T cd08232           5 AAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVN   84 (339)
T ss_pred             cCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEc
Confidence            34568999999999999999999999999999998764 32211  2357789999999999999999999999999872


Q ss_pred             C-------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC
Q 036416          157 G-------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK  205 (256)
Q Consensus       157 ~-------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~  205 (256)
                      .                               ...|+|++|+.++.+.++++|+++++++++. +..+.++|+++.....
T Consensus        85 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~  163 (339)
T cd08232          85 PSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGD  163 (339)
T ss_pred             cCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCC
Confidence            1                               1258999999999999999999999999875 5788899999877655


Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      + +|++|||.| +|++|.+++|+|+.+|+ +|++++.++++.++++++|++
T Consensus       164 ~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~  212 (339)
T cd08232         164 L-AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD  212 (339)
T ss_pred             C-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence            6 999999987 69999999999999999 799999988888888999875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=7.7e-26  Score=197.74  Aligned_cols=168  Identities=32%  Similarity=0.383  Sum_probs=147.8

Q ss_pred             CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhH-hCCCCC--CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC
Q 036416           81 PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR-KGVYKP--AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG  157 (256)
Q Consensus        81 ~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~  157 (256)
                      ++.+++++++.|++.++||+|++.++++|+.|++.+ .|..+.  +.+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus         4 ~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   83 (312)
T cd08269           4 PGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS   83 (312)
T ss_pred             CCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec
Confidence            456889999999999999999999999999999987 665432  22478999999999999999999999999999886


Q ss_pred             CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc-hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-
Q 036416          158 GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM-LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-  235 (256)
Q Consensus       158 ~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~-~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-  235 (256)
                      .  |+|++|+.++.+.++++|+++  ..+ +++ .++.++++++. .+++++|++|+|+| +|++|.+++|+|+.+|++ 
T Consensus        84 ~--g~~~~~~~v~~~~~~~lP~~~--~~~-~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~  156 (312)
T cd08269          84 G--GAFAEYDLADADHAVPLPSLL--DGQ-AFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARR  156 (312)
T ss_pred             C--CcceeeEEEchhheEECCCch--hhh-HHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence            5  899999999999999999998  232 333 77888998886 78899999999997 699999999999999998 


Q ss_pred             EEEEeCChhhHHHHHhCCCC
Q 036416          236 VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       236 Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |+++++++++.++++++|++
T Consensus       157 v~~~~~~~~~~~~~~~~g~~  176 (312)
T cd08269         157 VIAIDRRPARLALARELGAT  176 (312)
T ss_pred             EEEECCCHHHHHHHHHhCCc
Confidence            99999999999999999975

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.94  E-value=1.4e-25  Score=197.71  Aligned_cols=179  Identities=25%  Similarity=0.301  Sum_probs=153.3

Q ss_pred             EEEEEcccC----CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCC
Q 036416           71 KAIRVYEHG----DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        71 ~a~~~~~~~----~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      +++.++..+    .++.+++++.+.|.+.+++|+||+.++++|+.|.....+....   ...+.++|+|++|+|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~   82 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP   82 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence            566666554    5678999999999999999999999999999887655543211   113467899999999999964


Q ss_pred             CCccCCCCEEEEeCCCCcceeeEEEecC-CCeEECCCCCC--HHHHhh-hchhHHHHHHHHHHHcCCCCCCEEEEecCCC
Q 036416          144 LTGRTVGDIIAYAGGAMGSYAEEQILPA-NKVVPVPSSID--PVIAAS-IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG  219 (256)
Q Consensus       144 v~~~~~Gd~V~~~~~~~G~~a~~~~v~~-~~~~~ip~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g  219 (256)
                        ++++||+|+++    ++|++|+.++. +.++++|++++  +.++++ +++.+.|||+++...+.+.+|++|+|+|++|
T Consensus        83 --~~~~Gd~V~~~----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  156 (329)
T cd05288          83 --DFKVGDLVSGF----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAG  156 (329)
T ss_pred             --CCCCCCEEecc----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcc
Confidence              79999999875    47999999999 99999999995  555555 8899999999998878899999999999999


Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCCC
Q 036416          220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGCH  255 (256)
Q Consensus       220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga~  255 (256)
                      ++|++++|+|+.+|++|+++++++++.+++++ +|++
T Consensus       157 ~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~  193 (329)
T cd05288         157 AVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFD  193 (329)
T ss_pred             hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCc
Confidence            99999999999999999999999999999988 9975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05281 TDH Threonine dehydrogenase

Probab=99.94  E-value=1.7e-25  Score=198.86  Aligned_cols=181  Identities=29%  Similarity=0.316  Sum_probs=153.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---CCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---KPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++.++.++.  .+.+.+.+.|.|.++|++||+.++++|+.|++++.+..   .....|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~   78 (341)
T cd05281           1 MKAIVKTKAGP--GAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTR   78 (341)
T ss_pred             CcceEEecCCC--ceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCC
Confidence            68888887654  48888999999999999999999999999998765432   12235678999999999999999999


Q ss_pred             cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      +++||+|++...                          ..|+|++|++++.+.++++|++++.+.+ +++..+.++++++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~  157 (341)
T cd05281          79 VKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTV  157 (341)
T ss_pred             CCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHH
Confidence            999999988511                          2489999999999999999999998544 5677888888876


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .  ...++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.++++++|+++
T Consensus       158 ~--~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~  211 (341)
T cd05281         158 L--AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV  211 (341)
T ss_pred             H--hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce
Confidence            4  3568999999987 69999999999999999 7999988889999999999753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08251 polyketide_synthase polyketide synthase

Probab=99.94  E-value=1.3e-25  Score=194.74  Aligned_cols=164  Identities=34%  Similarity=0.502  Sum_probs=150.5

Q ss_pred             CCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC-CCCcceeeEEE
Q 036416           91 IGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG-GAMGSYAEEQI  168 (256)
Q Consensus        91 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~-~~~G~~a~~~~  168 (256)
                      .|++.+++|+|++.++++|+.|+....|.++. ..+|.++|+|++|+|+++|+++.++++||+|+++. ...|+|++|+.
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~   81 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT   81 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence            57789999999999999999999998886543 34688999999999999999999999999999875 34689999999


Q ss_pred             ecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          169 LPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       169 v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      ++.+.++++|+++++++++.++..+.+||+++. ..++++|++|+|++++|++|++++|+|+.+|++|++++.++++.++
T Consensus        82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  160 (303)
T cd08251          82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEY  160 (303)
T ss_pred             ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            999999999999999999999999999999985 6799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCC
Q 036416          249 AKDDGCH  255 (256)
Q Consensus       249 ~~~~Ga~  255 (256)
                      ++++|++
T Consensus       161 ~~~~g~~  167 (303)
T cd08251         161 LKQLGVP  167 (303)
T ss_pred             HHHcCCC
Confidence            9999975

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=3.7e-25  Score=193.11  Aligned_cols=184  Identities=43%  Similarity=0.640  Sum_probs=163.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCC-CCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPG-EGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      |+++++..++.+..+.+.+.+ |.+. +++++|++.++++|+.|++...|.+.. ...|.++|||++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            688888877777778888877 7665 599999999999999999988776532 2346689999999999999999999


Q ss_pred             CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ++||+|+++.. .|++++|+.++.+.++++|+++++.+++.+...+.+||+++....++++|++|+|+|++|++|+++++
T Consensus        80 ~~G~~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~  158 (323)
T cd08241          80 KVGDRVVALTG-QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQ  158 (323)
T ss_pred             CCCCEEEEecC-CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHH
Confidence            99999999861 38999999999999999999999999998999999999998877889999999999988999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+..|++|+.++.++++.++++++|++
T Consensus       159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd08241         159 LAKALGARVIAAASSEEKLALARALGAD  186 (323)
T ss_pred             HHHHhCCEEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999999999999988874

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=3e-25  Score=189.40  Aligned_cols=157  Identities=41%  Similarity=0.556  Sum_probs=143.4

Q ss_pred             eEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCC------------------
Q 036416           98 EIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG------------------  158 (256)
Q Consensus        98 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~------------------  158 (256)
                      ||+|++.++++|+.|++.+.|..+ ...+|.++|||++|+|+++|++++.+++||+|++...                  
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   80 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI   80 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence            689999999999999999988765 3446789999999999999999999999999998762                  


Q ss_pred             ----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC
Q 036416          159 ----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA  234 (256)
Q Consensus       159 ----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga  234 (256)
                          ..|+|++|+.++.+.++++|+++++++++.++..+.+||+++.....+++|++|+|+|+.+ +|++++++++..|+
T Consensus        81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~  159 (271)
T cd05188          81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA  159 (271)
T ss_pred             eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence                2589999999999999999999999999999999999999998887779999999999755 99999999999999


Q ss_pred             eEEEEeCChhhHHHHHhCCCC
Q 036416          235 TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       235 ~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++++.++++.++++++|++
T Consensus       160 ~v~~~~~~~~~~~~~~~~g~~  180 (271)
T cd05188         160 RVIVTDRSDEKLELAKELGAD  180 (271)
T ss_pred             eEEEEcCCHHHHHHHHHhCCc
Confidence            999999999999999988865

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.94  E-value=5.3e-25  Score=195.63  Aligned_cols=174  Identities=30%  Similarity=0.362  Sum_probs=146.9

Q ss_pred             cccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCccCCCCE
Q 036416           76 YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDI  152 (256)
Q Consensus        76 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~  152 (256)
                      ++++.+  +++++.|.|.|+++||+||+.++++|+.|+.++.+...   ...+|.++|+|++|+|+++|++++++++||+
T Consensus         5 ~~~~~~--~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   82 (340)
T TIGR00692         5 TKPGYG--AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY   82 (340)
T ss_pred             ccCCCC--cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence            344444  78889999999999999999999999999998765421   1235678999999999999999999999999


Q ss_pred             EEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC
Q 036416          153 IAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV  206 (256)
Q Consensus       153 V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~  206 (256)
                      |++..                          ...|+|++|++++.+.++++|++++++++ +++..+.+|++++  ....
T Consensus        83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~  159 (340)
T TIGR00692        83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGP  159 (340)
T ss_pred             EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccC
Confidence            98731                          13589999999999999999999998655 5678888898876  3467


Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|++|+|.| +|++|.+++|+|+.+|++ |++++.++++.+.++++|++
T Consensus       160 ~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  208 (340)
T TIGR00692       160 ISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT  208 (340)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            8999999987 699999999999999996 88888888889999999975

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=2.4e-24  Score=189.84  Aligned_cols=183  Identities=37%  Similarity=0.590  Sum_probs=156.9

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |++.+...+.++.+.+.+.+.|.+.+++|+|++.++++|+.|+....|.++. +..|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4566666666667888888888889999999999999999999988876542 345778999999999999999999999


Q ss_pred             CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416          150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA  229 (256)
Q Consensus       150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la  229 (256)
                      ||+|+++.. .|+|++|+.++.+.++++|+++++++++.+++.+.++|+++....++++|++|+|+|++|++|++++++|
T Consensus        81 G~~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a  159 (337)
T cd08275          81 GDRVMGLTR-FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC  159 (337)
T ss_pred             CCEEEEecC-CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHH
Confidence            999998753 3899999999999999999999999999999999999999888889999999999998899999999999


Q ss_pred             HHc-CCeEEEEeCChhhHHHHHhCCCC
Q 036416          230 NAL-GATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       230 ~~~-ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +.+ +..++... .+++.++++++|++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~g~~  185 (337)
T cd08275         160 KTVPNVTVVGTA-SASKHEALKENGVT  185 (337)
T ss_pred             HHccCcEEEEeC-CHHHHHHHHHcCCc
Confidence            998 43333332 35678888888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.93  E-value=2.5e-24  Score=184.78  Aligned_cols=153  Identities=37%  Similarity=0.489  Sum_probs=142.6

Q ss_pred             CeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEE
Q 036416           97 GEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVP  176 (256)
Q Consensus        97 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~  176 (256)
                      +||+||+.++++|+.|++...|..+  .+|.++|||++|+|+++|+++..+++||+|++...  |+|++|+.++.+.+++
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~--g~~~~~~~~~~~~~~~   76 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP--GAFATHVRVDARLVVK   76 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec--CcccceEEechhheEe
Confidence            5899999999999999999888652  35789999999999999999999999999998864  8999999999999999


Q ss_pred             CCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +|+++++.+++.+++.+.++|.++....++++|++|+|+|++|++|++++|+|+.+|++|++++.++++.++++++|
T Consensus        77 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~  153 (293)
T cd05195          77 IPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELG  153 (293)
T ss_pred             CCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence            99999999999999999999999888889999999999998999999999999999999999999999999998887

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.92  E-value=4.8e-24  Score=180.41  Aligned_cols=171  Identities=27%  Similarity=0.340  Sum_probs=141.6

Q ss_pred             CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeC--CCCCccCCCCEEEEeCC
Q 036416           81 PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVG--PGLTGRTVGDIIAYAGG  158 (256)
Q Consensus        81 ~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG--~~v~~~~~Gd~V~~~~~  158 (256)
                      ++++++++.++|+|+++|||||+.|.+++| ....+....++-..|+-+|...+|-++...  ++...|++||.|..+. 
T Consensus        24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DP-ymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~-  101 (340)
T COG2130          24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDP-YMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS-  101 (340)
T ss_pred             CCCceeEeccCCCCCcCceEEEEEEeccCH-HHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc-
Confidence            466999999999999999999999999977 222222333333457778876666554433  5677899999998875 


Q ss_pred             CCcceeeEEEecCCCeEECCCCCC--HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeE
Q 036416          159 AMGSYAEEQILPANKVVPVPSSID--PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV  236 (256)
Q Consensus       159 ~~G~~a~~~~v~~~~~~~ip~~~~--~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~V  236 (256)
                         +|++|..++...+.|+.+..-  ......+.++..|||.+|.+.++.++|++|+|.+|+|++|..+.|+||..|++|
T Consensus       102 ---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rV  178 (340)
T COG2130         102 ---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV  178 (340)
T ss_pred             ---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeE
Confidence               699999999999999975532  233456789999999999999999999999999999999999999999999999


Q ss_pred             EEEeCChhhHHHHHh-CCCCC
Q 036416          237 IGTVSTKEKAAQAKD-DGCHH  256 (256)
Q Consensus       237 i~~~~~~~~~~~~~~-~Ga~~  256 (256)
                      ++++.+++|++++++ +|+|.
T Consensus       179 VGiaGg~eK~~~l~~~lGfD~  199 (340)
T COG2130         179 VGIAGGAEKCDFLTEELGFDA  199 (340)
T ss_pred             EEecCCHHHHHHHHHhcCCce
Confidence            999999999999997 89874

>smart00829 PKS_ER Enoylreductase

Probab=99.92  E-value=1.6e-23  Score=179.66  Aligned_cols=149  Identities=38%  Similarity=0.493  Sum_probs=139.6

Q ss_pred             EEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCC
Q 036416          101 VRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSS  180 (256)
Q Consensus       101 Vkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~  180 (256)
                      ||+.++++|+.|++...|.++   .|.++|||++|+|+++|++++.+++||+|++...  |+|++|+.++.+.++++|++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--g~~~~~~~~~~~~~~~~p~~   76 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP--GSFATYVRTDARLVVPIPDG   76 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC--CceeeEEEccHHHeEECCCC
Confidence            889999999999999887654   3578999999999999999999999999998865  89999999999999999999


Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +++++++.+++.+.++|.++.....+.+|++|+|+|++|++|++++++|+.+|++|+++++++++.++++++|+
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~  150 (288)
T smart00829       77 LSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGI  150 (288)
T ss_pred             CCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence            99999999999999999998777899999999999999999999999999999999999999999999999997

Enoylreductase in Polyketide synthases.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.91  E-value=1.4e-23  Score=182.07  Aligned_cols=127  Identities=31%  Similarity=0.378  Sum_probs=113.6

Q ss_pred             CCCcccEEEEEEeCCCCC------ccCCCCEEEEeCC---------------------------------CCcceeeEEE
Q 036416          128 TPGMEAVGEVVAVGPGLT------GRTVGDIIAYAGG---------------------------------AMGSYAEEQI  168 (256)
Q Consensus       128 ~lG~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~---------------------------------~~G~~a~~~~  168 (256)
                      ++|||++|+|+++|++|+      ++++||||++...                                 .+|+|+||++
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      8999999975310                                 2489999999


Q ss_pred             ecCC-CeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhH
Q 036416          169 LPAN-KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKA  246 (256)
Q Consensus       169 v~~~-~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~  246 (256)
                      +|.. .++++|+++++++++.+++.+.|+|+++... ...+|++|||+| +|++|++++|+|+.+|++ |++++.+++|+
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~-~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAA-GDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVVAADPSPDRR  158 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhc-cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            9997 6999999999999999999999999998654 567999999998 599999999999999996 89998899999


Q ss_pred             HHHHhCCCCC
Q 036416          247 AQAKDDGCHH  256 (256)
Q Consensus       247 ~~~~~~Ga~~  256 (256)
                      ++++++|+++
T Consensus       159 ~~a~~~Ga~~  168 (280)
T TIGR03366       159 ELALSFGATA  168 (280)
T ss_pred             HHHHHcCCcE
Confidence            9999999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.84  E-value=6.9e-20  Score=157.92  Aligned_cols=128  Identities=36%  Similarity=0.477  Sum_probs=116.9

Q ss_pred             CCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          118 GVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       118 g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      |..|.+ +|.++|||++|+|+++|++++++++||+|+++.    .|++|+.++.+.++++|+++++++++.+ ..+.+||
T Consensus        14 ~~~~~~-~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~   87 (277)
T cd08255          14 GTEKLP-LPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----PHAERVVVPANLLVPLPDGLPPERAALT-ALAATAL   87 (277)
T ss_pred             cCccCc-CCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHH
Confidence            444444 789999999999999999999999999999864    5999999999999999999999999888 7899999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~G  253 (256)
                      +++. .+++++|++++|+| +|++|++++++|+.+|++ |+++++++++.++++++|
T Consensus        88 ~~~~-~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g  142 (277)
T cd08255          88 NGVR-DAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG  142 (277)
T ss_pred             HHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC
Confidence            9985 57899999999997 699999999999999998 999999999999999998

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.80  E-value=6.3e-18  Score=143.02  Aligned_cols=163  Identities=24%  Similarity=0.320  Sum_probs=125.0

Q ss_pred             EeeCC-CCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCC----cccEEEEEEeCCCCCccCCCCEEEEeCCCCc
Q 036416           88 DVEIG-EPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPG----MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMG  161 (256)
Q Consensus        88 ~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G  161 (256)
                      +.+.+ ++++++||||..|.+..|--...+.-..+. -..|+.+|    ..++|.|++  ++-+++++||.|+++.    
T Consensus        28 ~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~----  101 (343)
T KOG1196|consen   28 TVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV----  101 (343)
T ss_pred             eecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec----
Confidence            34433 568999999999999855432222211111 11233343    378999999  4667899999999987    


Q ss_pred             ceeeEEEecCCC--eEECC--CCCCHHHH-hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeE
Q 036416          162 SYAEEQILPANK--VVPVP--SSIDPVIA-ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV  236 (256)
Q Consensus       162 ~~a~~~~v~~~~--~~~ip--~~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~V  236 (256)
                      +|.||.+++...  .++++  .+.++... ..+.++.+|||.++.+.+..++|++|+|.||+|++|+++.|+|+.+||+|
T Consensus       102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~V  181 (343)
T KOG1196|consen  102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYV  181 (343)
T ss_pred             cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEE
Confidence            599999998753  44443  34444443 45678999999999999999999999999999999999999999999999


Q ss_pred             EEEeCChhhHHHHH-hCCCCC
Q 036416          237 IGTVSTKEKAAQAK-DDGCHH  256 (256)
Q Consensus       237 i~~~~~~~~~~~~~-~~Ga~~  256 (256)
                      ++++.+++|.++++ +||.|+
T Consensus       182 VGsaGS~EKv~ll~~~~G~d~  202 (343)
T KOG1196|consen  182 VGSAGSKEKVDLLKTKFGFDD  202 (343)
T ss_pred             EEecCChhhhhhhHhccCCcc
Confidence            99999999999987 578874

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.78  E-value=8.3e-19  Score=131.08  Aligned_cols=82  Identities=43%  Similarity=0.667  Sum_probs=70.4

Q ss_pred             CCeEEEEEeEEeeChhhhHhHhC-CCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC-----------------
Q 036416           96 EGEIRVRNKAIGLNFIDVYYRKG-VYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG-----------------  157 (256)
Q Consensus        96 ~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----------------  157 (256)
                      |+|||||++++|||++|++++.| ......+|.++|||++|+|+++|+++++|++||+|++..                 
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            68999999999999999999999 345567899999999999999999999999999998743                 


Q ss_pred             ---------CCCcceeeEEEecCCCeEEC
Q 036416          158 ---------GAMGSYAEEQILPANKVVPV  177 (256)
Q Consensus       158 ---------~~~G~~a~~~~v~~~~~~~i  177 (256)
                               ..+|+|+||+.+|.+.++++
T Consensus        81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                     12599999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.77  E-value=6.5e-19  Score=168.98  Aligned_cols=162  Identities=27%  Similarity=0.293  Sum_probs=144.1

Q ss_pred             CCCCceEEEEeeCC---CCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCC-------CCCCcccEEEEEEeCCCCCccC
Q 036416           79 GDPEVLKWEDVEIG---EPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP-------FTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        79 ~~~~~l~~~~~~~p---~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p-------~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |+...++|.+-|..   +..++.=+..|.|+.||+.|+....|+.+....|       .++|.|++|+          .+
T Consensus      1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~ 1493 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DA 1493 (2376)
T ss_pred             ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cC
Confidence            55667888887765   3467888899999999999999999998765444       5778899887          34


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      -|.||.++.+. -++++.+.++.+.++.+|.++.+++|++.|+.+.||||+|..++..++|+++|||+++|++|+++|.+
T Consensus      1494 ~GrRvM~mvpA-ksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIai 1572 (2376)
T KOG1202|consen 1494 SGRRVMGMVPA-KSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAI 1572 (2376)
T ss_pred             CCcEEEEeeeh-hhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHH
Confidence            59999998873 57999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHh
Q 036416          229 ANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      |-++|++|+.++.+.+|++++++
T Consensus      1573 ALa~G~~VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1573 ALAHGCTVFTTVGSAEKREFLLK 1595 (2376)
T ss_pred             HHHcCCEEEEecCcHHHHHHHHH
Confidence            99999999999999999998864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.37  E-value=3.5e-06  Score=78.58  Aligned_cols=49  Identities=31%  Similarity=0.272  Sum_probs=46.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ..+|++|+|+| +|.+|+++++.|+.+||+|++++.+++|++.++++|++
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~  210 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE  210 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            46899999999 69999999999999999999999999999999999986

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.76  E-value=0.0001  Score=67.22  Aligned_cols=58  Identities=26%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          197 QFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       197 ~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |.++.+..+ .-+|++|+|.| .|.+|+.+++.++..|++|++++.++.|.+.++++|++
T Consensus       189 ~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~  247 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE  247 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE
Confidence            444444334 46899999999 69999999999999999999999999999999999974

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.47  E-value=0.00048  Score=64.40  Aligned_cols=48  Identities=31%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .++++|+|+| +|.+|++++++|+.+|++|++++.++++++.++++|++
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~  209 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE  209 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            4679999999 69999999999999999999999999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.19  E-value=0.0017  Score=55.39  Aligned_cols=93  Identities=22%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc-CCCCCCEEEEecCCChHHHH
Q 036416          146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~ga~g~vG~~  224 (256)
                      .+++||++++.+.    |.+|.. +...++.+++++++..+.    ...|.. ++.... .+.++++||-.| +|. |..
T Consensus        66 p~~~g~~~~i~p~----~~~~~~-~~~~~i~i~p~~afgtg~----h~tt~~-~l~~l~~~~~~~~~VLDiG-cGs-G~l  133 (250)
T PRK00517         66 PIRIGDRLWIVPS----WEDPPD-PDEINIELDPGMAFGTGT----HPTTRL-CLEALEKLVLPGKTVLDVG-CGS-GIL  133 (250)
T ss_pred             CEEEcCCEEEECC----CcCCCC-CCeEEEEECCCCccCCCC----CHHHHH-HHHHHHhhcCCCCEEEEeC-CcH-HHH
Confidence            3678999887764    566644 667789999998877643    222222 222211 257899999999 676 988


Q ss_pred             HHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416          225 LCQWANALGA-TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       225 ai~la~~~ga-~Vi~~~~~~~~~~~~~~  251 (256)
                      ++.+++ .|+ +|++++.++...+.+++
T Consensus       134 ~i~~~~-~g~~~v~giDis~~~l~~A~~  160 (250)
T PRK00517        134 AIAAAK-LGAKKVLAVDIDPQAVEAARE  160 (250)
T ss_pred             HHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            876555 677 59999999888777654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.15  E-value=0.0019  Score=59.26  Aligned_cols=60  Identities=32%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          194 MTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       194 ~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+|.++....++. .|++|+|.| .|.+|..+++.++.+|++|++++.++.|...+...|+
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~  256 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF  256 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC
Confidence            34566665543544 899999999 6999999999999999999999998888766666665

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.06  E-value=0.0046  Score=54.19  Aligned_cols=47  Identities=28%  Similarity=0.328  Sum_probs=43.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .|.+|+|+| .|.+|+.+++.++.+|++|+++++++++.+.++++|++
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe
Confidence            689999999 69999999999999999999999998888888888864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.98  E-value=0.0033  Score=57.29  Aligned_cols=58  Identities=28%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             HHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          196 AQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       196 a~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ++.++.+..+ .-.|++|+|.| .|.+|+.+++.++..|++|++++.++.+...++..|+
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~  239 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF  239 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC
Confidence            3444444333 36899999999 7999999999999999999999988888777777775

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.72  E-value=0.0038  Score=59.61  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=42.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---------------------hhhHHHHHhCCCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST---------------------KEKAAQAKDDGCH  255 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~---------------------~~~~~~~~~~Ga~  255 (256)
                      ..++|++|+|+| +|+.|+.+++.++..|++|++++..                     +.+++.++++|++
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~  203 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVE  203 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCE
Confidence            367899999999 5999999999999999999998842                     4567788889875

>PLN02494 adenosylhomocysteinase

Probab=96.59  E-value=0.0085  Score=55.43  Aligned_cols=57  Identities=32%  Similarity=0.184  Sum_probs=46.0

Q ss_pred             HHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          197 QFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       197 ~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +.++.+..++ -.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~  298 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY  298 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC
Confidence            4444444343 6799999999 7999999999999999999999998877667776665

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.45  E-value=0.0036  Score=55.26  Aligned_cols=80  Identities=24%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             CeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC---CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhH-H
Q 036416          173 KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKA-A  247 (256)
Q Consensus       173 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~-~  247 (256)
                      ..+++|+.+..+.++... +...++.++.....   --+|++|+|.| +|.+|..+++.++..|+ +|+++.++++|. +
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            456667777776665432 33444444433222   14789999999 59999999999998876 788899987765 6


Q ss_pred             HHHhCCC
Q 036416          248 QAKDDGC  254 (256)
Q Consensus       248 ~~~~~Ga  254 (256)
                      +++++|+
T Consensus       218 la~~~g~  224 (311)
T cd05213         218 LAKELGG  224 (311)
T ss_pred             HHHHcCC
Confidence            7778886

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08324 short chain dehydrogenase; Validated

Probab=96.39  E-value=0.0071  Score=59.08  Aligned_cols=78  Identities=22%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             cceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416          161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV  240 (256)
Q Consensus       161 G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~  240 (256)
                      .++++|..+++..++.+ +.++.+++..-...          ..+.-+|+++||.||+|++|..+++.+...|++|++++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            46678888887777776 66677766411000          11234689999999999999999999999999999999


Q ss_pred             CChhhHHHH
Q 036416          241 STKEKAAQA  249 (256)
Q Consensus       241 ~~~~~~~~~  249 (256)
                      +++++.+.+
T Consensus       454 r~~~~~~~~  462 (681)
T PRK08324        454 LDEEAAEAA  462 (681)
T ss_pred             CCHHHHHHH
Confidence            988776544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.26  E-value=0.044  Score=50.90  Aligned_cols=48  Identities=31%  Similarity=0.291  Sum_probs=40.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .-.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~  298 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY  298 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc
Confidence            45799999999 7999999999999999999999887766655555565

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.15  E-value=0.02  Score=44.07  Aligned_cols=44  Identities=30%  Similarity=0.357  Sum_probs=37.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHH-HhC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQA-KDD  252 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~-~~~  252 (256)
                      .+.+++|.| +|+.|.+++..+...|++ |+++.++.+|.+.+ +++
T Consensus        11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~   56 (135)
T PF01488_consen   11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF   56 (135)
T ss_dssp             TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence            589999999 599999999999999995 99999998887654 444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.15  E-value=0.035  Score=45.28  Aligned_cols=42  Identities=26%  Similarity=0.295  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.+++|.|++|++|..++..+...|++|+.+.++.++.+.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l   68 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA   68 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            578999999899999998888888899999999987776543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.03  E-value=0.017  Score=51.08  Aligned_cols=43  Identities=14%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      +.|.+++|.||++++|...+......|++|+.+++++++.+.+
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            3589999999999999998888878899999999998876544

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.021  Score=49.75  Aligned_cols=42  Identities=21%  Similarity=0.382  Sum_probs=36.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.+++|.||+|++|...++.+...|++|++++++.++.+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            357899999999999999998888999999999987765443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.96  E-value=0.048  Score=47.59  Aligned_cols=46  Identities=24%  Similarity=0.328  Sum_probs=40.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|++|+|.| .|.+|..++..++..|++|+++++++++.+.+.++|+
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~  195 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARITEMGL  195 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence            578999999 6999999999999999999999999887776666664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.92  E-value=0.031  Score=44.64  Aligned_cols=45  Identities=29%  Similarity=0.347  Sum_probs=38.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+|+|.| +|.+|.-|+++++.+|++|+..+..+++.+..+..++
T Consensus        20 p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~   64 (168)
T PF01262_consen   20 PAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA   64 (168)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred             CeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence            36799999 6999999999999999999999999888888777664

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.024  Score=49.89  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|.+++|.||++++|..++..+...|++|+.++++.++.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~   52 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGE   52 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4789999999999999999988889999999999877654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.90  E-value=0.026  Score=51.95  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=75.0

Q ss_pred             CCCcccEEEEEEeCCCCCccCCCCEEEEeC-----------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc
Q 036416          128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAG-----------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM  190 (256)
Q Consensus       128 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~  190 (256)
                      .-|+|+++.+.+|++++++.-+|+.-+ ++                 ..++.|++.+.+        |+.+..+.+. ..
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI-lgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~--------~k~v~~~t~i-~~  160 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI-LGQVKDAYALAQEAGTVGTILNRLFQKAFSV--------AKRVRTETGI-GA  160 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHH--------HhhHhhhcCC-CC
Confidence            459999999999999998876776543 11                 002333333333        3333222221 11


Q ss_pred             hhHHHHHHHHHHHcC---CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416          191 LKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      .+...++.++.....   -.+|++|+|+| +|.+|.++++.++..|+ +|+++.+++++.+ +++++|+
T Consensus       161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        161 GAVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             CCcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence            123334444433221   25789999999 69999999999999998 7999999988855 6777774

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.90  E-value=0.024  Score=53.83  Aligned_cols=46  Identities=22%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      ..+.+.|++|||.||+|++|..+++.+...|++|++++++.++.+.
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~  119 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAES  119 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            3467799999999999999999999998899999999998877653

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.026  Score=47.93  Aligned_cols=43  Identities=33%  Similarity=0.438  Sum_probs=36.6

Q ss_pred             CCCCCEEEEecCCC-hHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          206 VEPGHTVLIQAAAG-GVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       206 ~~~g~~VlI~ga~g-~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      +..+++++|.||+| ++|.++++.+...|++|+++++++++.+.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~   57 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGE   57 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            44678999999986 89999999999999999999988766543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.81  E-value=0.05  Score=44.86  Aligned_cols=46  Identities=33%  Similarity=0.316  Sum_probs=39.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga  254 (256)
                      .|.+|+|+| .|.+|..+++.+...|++|++++.++++.+.++ .+|+
T Consensus        27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          27 EGKTVAVQG-LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            678999999 699999999999999999999999888776654 3454

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.79  E-value=0.031  Score=45.11  Aligned_cols=46  Identities=28%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      -.|.+|.|+| .|.+|..+++.++..|++|++.++.........++|
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            3689999999 799999999999999999999999876554344444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK04148 hypothetical protein; Provisional

Probab=95.75  E-value=0.038  Score=42.49  Aligned_cols=48  Identities=15%  Similarity=0.068  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ...++.++++.| +| .|...+..+...|.+|+++|.+++..+.+++.|.
T Consensus        13 ~~~~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~   60 (134)
T PRK04148         13 EKGKNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGL   60 (134)
T ss_pred             ccccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC
Confidence            334678899999 68 8875565666789999999999999998888775

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.73  E-value=0.027  Score=48.44  Aligned_cols=46  Identities=37%  Similarity=0.438  Sum_probs=39.8

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~  251 (256)
                      +.+++|++||.+| +|+ |..++++++..|.  +|++++.+++.++.+++
T Consensus        73 ~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         73 AELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             ccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            5788999999999 677 9988899988775  69999999998888875

>PRK06196 oxidoreductase; Provisional

Probab=95.67  E-value=0.034  Score=48.86  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.+++|.||+|++|..++......|++|+++++++++.+.
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~   65 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVARE   65 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999999999999888899999999998776543

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.035  Score=46.80  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+.++||.||+|++|..+++.+...|++|+.++++++..+...
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~   56 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA   56 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4679999999999999999988889999999998866544443

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.039  Score=48.20  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=35.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|.+|+|.||+|++|..+++.....|++|++++++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999999999999999988888999999998876643

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.50  E-value=0.036  Score=50.12  Aligned_cols=45  Identities=31%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga  254 (256)
                      +.+|+|.| +|.+|+.+++.++.+|++|+++++++++.+.+. .+|.
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc
Confidence            45699999 599999999999999999999999888877664 4553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=95.19  E-value=0.48  Score=41.77  Aligned_cols=114  Identities=18%  Similarity=0.102  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCCCccCCCCEEEEeCCC--------------------------CcceeeEEEecCCCeEECCCCCCHHHH-
Q 036416          134 VGEVVAVGPGLTGRTVGDIIAYAGGA--------------------------MGSYAEEQILPANKVVPVPSSIDPVIA-  186 (256)
Q Consensus       134 ~G~V~~vG~~v~~~~~Gd~V~~~~~~--------------------------~G~~a~~~~v~~~~~~~ip~~~~~~~a-  186 (256)
                      -++|++  +.+.++.+|.||.++-+.                          .-.|-+|.++..+..+    +-+.+.. 
T Consensus        38 fA~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y----~~~~e~~~  111 (314)
T PF11017_consen   38 FATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAY----DPEREDWQ  111 (314)
T ss_pred             EEEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCccc----CcchhHHH
Confidence            466777  889999999999987541                          0122233333322211    0122222 


Q ss_pred             hhhchhHHHHHHHHHHHc--CCCCCCEEEEecCCChHHHHHHHHHH-HcC-CeEEEEeCChhhHHHHHhCCC
Q 036416          187 ASIMLKGMTAQFLLRRCF--KVEPGHTVLIQAAAGGVGSLLCQWAN-ALG-ATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~--~~~~g~~VlI~ga~g~vG~~ai~la~-~~g-a~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +.+-.-+.|.|..-....  +.-..+.|+|.+|++=+++..+.+++ ..+ .+++++++. ...++.+++|+
T Consensus       112 ~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~-~N~~Fve~lg~  182 (314)
T PF11017_consen  112 MLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSA-RNVAFVESLGC  182 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecC-cchhhhhccCC
Confidence            233345566665422221  12344678999999999999888888 444 489999986 45678899986

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=95.19  E-value=0.07  Score=48.52  Aligned_cols=58  Identities=26%  Similarity=0.335  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          193 GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       193 ~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      ....+..+....++++|++||-+| + |.|..+..+++..|++|++++.+++..+.+++.
T Consensus       152 q~~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~  209 (383)
T PRK11705        152 QEAKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVVGVTISAEQQKLAQER  209 (383)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            344455555667889999999999 4 678888999998899999999999998888764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.18  E-value=0.06  Score=46.62  Aligned_cols=50  Identities=32%  Similarity=0.412  Sum_probs=36.6

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+.+.+++++|++||-+| || -|..++.+|+..|++|++++.+++..++++
T Consensus        53 ~~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence            344667899999999999 45 788899999999999999999998887764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.14  E-value=0.061  Score=45.55  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.++||.||+|++|..+++.....|++|++++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999998899999999887

>PLN02253 xanthoxin dehydrogenase

Probab=95.13  E-value=0.067  Score=45.87  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|.+++|.||+|++|.++++.+...|++|+++++++++.+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~   56 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ   56 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4788999999999999999888889999999988765543

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.11  E-value=0.13  Score=47.42  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=79.9

Q ss_pred             CCCcccEEEEEEeCCCCCccCCCCEEEEe----------------CCCCcceeeEEEecCCCeEE---C-CCCCCHHHHh
Q 036416          128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYA----------------GGAMGSYAEEQILPANKVVP---V-PSSIDPVIAA  187 (256)
Q Consensus       128 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------~~~~G~~a~~~~v~~~~~~~---i-p~~~~~~~aa  187 (256)
                      .-|.|+++.+.+|++++++.-+|+.-+.-                ...++.|++++.++. .+..   + +..++...+|
T Consensus        89 ~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A  167 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSAA  167 (417)
T ss_pred             cCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH
Confidence            46889999999999999887777754410                012468888888775 3332   3 3344433332


Q ss_pred             hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHH-HHHhCCC
Q 036416          188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                              .-.+. ......+|++|+|+| +|.+|..+++.++..| .+|+++.++.++.+ +++++|.
T Consensus       168 --------v~la~-~~~~~l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       168 --------VELAE-RIFGSLKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             --------HHHHH-HHhCCccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence                    11122 222346789999999 5999999999999999 48999999987754 6677774

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.03  E-value=0.069  Score=47.20  Aligned_cols=43  Identities=23%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      -.|.+++|.|+++|+|..++..+...|++|+..+++.++.+.+
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~   75 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEA   75 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            3567899999999999999999999999999999998766554

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=94.90  E-value=0.14  Score=45.23  Aligned_cols=53  Identities=28%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .+.+.||.++||-.-+|.+|...+.+|...|.++|++..   +.+|+..+++||+.
T Consensus        97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gae  152 (362)
T KOG1252|consen   97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAE  152 (362)
T ss_pred             cCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCE
Confidence            357899999999999999999999999999999888875   47889999999974

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.63  E-value=0.23  Score=43.09  Aligned_cols=65  Identities=26%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +++++++|-      ..+...+....++++|++||=+|  .|=|.+++..|+..|++|++++-+++..+.+++
T Consensus        49 ~~~tL~eAQ------~~k~~~~~~kl~L~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          49 PDMTLEEAQ------RAKLDLILEKLGLKPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             CCCChHHHH------HHHHHHHHHhcCCCCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence            334555552      33444555678999999999999  455888999999999999999999988776643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.62  E-value=0.21  Score=43.50  Aligned_cols=41  Identities=22%  Similarity=0.193  Sum_probs=35.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      .+.+|+|+| +|++|.+++..+...|+ +|++++++.+|.+.+
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            568899999 69999999999999998 799999998876644

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.57  E-value=0.23  Score=43.24  Aligned_cols=92  Identities=14%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +.+|++.++.+.    |.++-..+....+.+.+++.|...    ....|...  .+..  ...+|++||-.| +|. |..
T Consensus       106 ~~~g~~~~i~p~----w~~~~~~~~~~~i~ldpg~aFgtG----~h~tt~l~l~~l~~--~~~~g~~VLDvG-cGs-G~l  173 (288)
T TIGR00406       106 VQFGKRFWICPS----WRDVPSDEDALIIMLDPGLAFGTG----THPTTSLCLEWLED--LDLKDKNVIDVG-CGS-GIL  173 (288)
T ss_pred             EEEcCeEEEECC----CcCCCCCCCcEEEEECCCCcccCC----CCHHHHHHHHHHHh--hcCCCCEEEEeC-CCh-hHH
Confidence            678887777654    323322233455666666654432    22333321  2222  246889999999 566 888


Q ss_pred             HHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416          225 LCQWANALGA-TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       225 ai~la~~~ga-~Vi~~~~~~~~~~~~~~  251 (256)
                      ++.+++ .|+ +|++++.++...+.+++
T Consensus       174 ai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       174 SIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             HHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            877776 566 89999999887776654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.48  E-value=0.21  Score=43.71  Aligned_cols=46  Identities=30%  Similarity=0.369  Sum_probs=41.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +.++-..++|.|++.++|++.+..++..|+.|..+.++.+|+..++
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~   74 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAK   74 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHH
Confidence            3455588999999999999999999999999999999999887765

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.40  E-value=0.11  Score=47.61  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|++++|.||+|++|.+++......|++|+++++++++.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4789999999999999999988889999999998766543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.39  E-value=0.15  Score=40.47  Aligned_cols=47  Identities=32%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      .-.|++++|.| -|-+|.-+++.++.+|++|++++.++-+.-.+..-|
T Consensus        20 ~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG   66 (162)
T PF00670_consen   20 MLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG   66 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT
T ss_pred             eeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC
Confidence            45899999999 899999999999999999999999987765555444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06720 hypothetical protein; Provisional

Probab=94.38  E-value=0.16  Score=40.59  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      .|..++|.||++++|..++......|++|++++++.+..
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~   53 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG   53 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            578999999999999999988888999999999876554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.38  E-value=0.024  Score=52.38  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=37.3

Q ss_pred             HcCCCCCCEEE----EecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          203 CFKVEPGHTVL----IQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       203 ~~~~~~g~~Vl----I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      ..++++|+++|    |+||+|++|.+++|+++..|++|+++...+.+
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~   74 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLT   74 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccc
Confidence            34678999998    99999999999999999999999998766553

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=94.37  E-value=0.21  Score=43.67  Aligned_cols=53  Identities=23%  Similarity=0.338  Sum_probs=44.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+++|+ .+|-+-+|.+|...+.+|+.+|.+++.+..   +.+|++.++.+||.
T Consensus        55 ~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAe  110 (300)
T COG0031          55 KRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAE  110 (300)
T ss_pred             HcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence            335699999 667777899999999999999998777764   58899999999984

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.35  E-value=0.26  Score=42.68  Aligned_cols=42  Identities=29%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~  249 (256)
                      ..+.+|+|+| +|++|.+++..+...| .+|+++.++.++.+.+
T Consensus       121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l  163 (278)
T PRK00258        121 LKGKRILILG-AGGAARAVILPLLDLGVAEITIVNRTVERAEEL  163 (278)
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3567899999 5999999999999999 5899999998876544

>PRK12367 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.1  Score=44.24  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+++|.||+|++|..+++.....|++|+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            468999999999999999998888999999998865

>PRK06484 short chain dehydrogenase; Validated

Probab=94.27  E-value=0.12  Score=48.49  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      ..|.++||.||++++|..+++.....|++|+.+++++++.+.++
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~  310 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLA  310 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35789999999999999999988899999999999877766554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.23  E-value=0.27  Score=42.75  Aligned_cols=43  Identities=28%  Similarity=0.337  Sum_probs=37.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~  250 (256)
                      .+|++++|.| +||.+.+++.-+...|+ +|+++.++.+|.+.+.
T Consensus       124 ~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         124 VTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELA  167 (283)
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            4689999999 59999999999999997 7999999988866553

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.02  E-value=0.35  Score=41.85  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      ....+.+++|.| +||.+.+++..+...|+ +|+++.++++|.+.+
T Consensus       118 ~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        118 QVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            344567899999 59999999999999998 699999998887654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.00  E-value=0.15  Score=43.15  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .+.+|||.||+|.+|..++..+...|.+|+++.+++++..
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   55 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK   55 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            4678999999999999999888888999999988766543

>PLN02686 cinnamoyl-CoA reductase

Probab=93.86  E-value=0.17  Score=45.68  Aligned_cols=44  Identities=16%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      ...+++|||.||+|.+|..++..+...|.+|+++.++.++.+.+
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l   93 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL   93 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            35678999999999999999999989999999888776554433

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.86  E-value=0.37  Score=41.51  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      ...+.+++|.|+ |++|.+++..+...|++|+++.+++++.+.+
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            355789999995 9999999988888899999999987775433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.82  E-value=0.29  Score=42.60  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=35.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      ..+.+++|.| +||.+.+++..+...|+ +|+++.++.+|.+.+
T Consensus       125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            3478999999 59999999998888998 789999998886654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.78  E-value=0.17  Score=47.24  Aligned_cols=47  Identities=17%  Similarity=0.153  Sum_probs=39.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---------------------hhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK---------------------EKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~---------------------~~~~~~~~~Ga~  255 (256)
                      .+++|+|+| +|+.|+.++..++..|.+|++++..+                     ...++++++|++
T Consensus       140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~  207 (467)
T TIGR01318       140 TGKRVAVIG-AGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIE  207 (467)
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCE
Confidence            688999999 59999999999999999998888653                     245677888864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.54  E-value=0.22  Score=43.29  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=35.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      .+.+|+|+| +|+.+.+++..+..+|+ +|+++.++.+|.+.+
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            578999999 69999999999999998 799999998876644

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=93.50  E-value=0.24  Score=36.00  Aligned_cols=42  Identities=33%  Similarity=0.400  Sum_probs=35.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhhHHHHHh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ||++||-.|  .+.|..++.+++. .+++|++++.+++-.+.+++
T Consensus         1 p~~~vLDlG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLG--CGTGRLSIALARLFPGARVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEET--TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEc--CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            688999998  5668999999984 78899999999988877754

...

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=93.38  E-value=0.21  Score=48.82  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|..+++.....|++|++++++.++.+.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~  453 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEA  453 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            47899999999999999999888899999999998766543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=93.32  E-value=0.2  Score=43.86  Aligned_cols=91  Identities=25%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      +++|++.++.+.    |.++-.-+...++.+.+++.|-..    ....|...  .|...  .++|++||=.|  .|.|.+
T Consensus       108 ~~vg~~~~I~P~----w~~~~~~~~~~~I~idPg~AFGTG----~H~TT~lcl~~l~~~--~~~g~~vLDvG--~GSGIL  175 (295)
T PF06325_consen  108 IRVGDRLVIVPS----WEEYPEPPDEIVIEIDPGMAFGTG----HHPTTRLCLELLEKY--VKPGKRVLDVG--CGSGIL  175 (295)
T ss_dssp             EEECTTEEEEET----T----SSTTSEEEEESTTSSS-SS----HCHHHHHHHHHHHHH--SSTTSEEEEES---TTSHH
T ss_pred             EEECCcEEEECC----CcccCCCCCcEEEEECCCCcccCC----CCHHHHHHHHHHHHh--ccCCCEEEEeC--CcHHHH
Confidence            678987776654    555522244567788888766543    34444442  23332  67899999888  566777


Q ss_pred             HHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416          225 LCQWANALGA-TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       225 ai~la~~~ga-~Vi~~~~~~~~~~~~~  250 (256)
                      ++..++ +|| +|+++|.++.-.+.++
T Consensus       176 aiaA~k-lGA~~v~a~DiDp~Av~~a~  201 (295)
T PF06325_consen  176 AIAAAK-LGAKKVVAIDIDPLAVEAAR  201 (295)
T ss_dssp             HHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred             HHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence            777666 588 7999999877555544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.27  E-value=0.19  Score=48.99  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..|++|+|+| +|+.|+.++..++..|.+|++++..+
T Consensus       325 ~~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIG-AGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3588999999 59999999999999999999998753

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.27  E-value=0.49  Score=38.69  Aligned_cols=46  Identities=15%  Similarity=0.249  Sum_probs=38.4

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~  250 (256)
                      ...+.+|++|+-.| +|. |..++++|+..+  .+|++++.+++..+.++
T Consensus        35 ~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         35 KLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            35788999999999 577 999999998864  58999999988877654

>PLN03013 cysteine synthase

Probab=93.25  E-value=0.44  Score=43.91  Aligned_cols=54  Identities=26%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|.+.+|...+|..|.+++..|+.+|.+++++..   +++|.+.++.+||+
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAe  223 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAE  223 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCE
Confidence            4456788866677777899999999999999998777754   47789999999985

>PLN02565 cysteine synthase

Probab=93.15  E-value=0.55  Score=41.66  Aligned_cols=53  Identities=28%  Similarity=0.305  Sum_probs=43.5

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ...+.+|++.+|...+|..|++++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        60 ~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~  115 (322)
T PLN02565         60 KGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAE  115 (322)
T ss_pred             cCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Confidence            345678877677777899999999999999998777665   47889999999984

>PRK06128 oxidoreductase; Provisional

Probab=93.10  E-value=0.26  Score=42.93  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.++||.||+|++|..++......|++|+.+..+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            46899999999999999999888899999887654

>PRK07201 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.25  Score=47.80  Aligned_cols=40  Identities=30%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      |.+++|.||+|++|..++......|++|+++++++++.+.
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~  410 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDE  410 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            6789999999999999998888889999999998776543

>PRK07985 oxidoreductase; Provisional

Probab=93.01  E-value=0.25  Score=42.99  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.++||.||+|++|..+++.+...|++|+.+.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            56799999999999999999998899999887653

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=92.96  E-value=0.3  Score=42.69  Aligned_cols=43  Identities=23%  Similarity=0.299  Sum_probs=37.0

Q ss_pred             CCCCEEEEecCCChHHHH-HHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSL-LCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~-ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +.|++.+|.||+.++|.+ +-++|+ .|.+|+.+.++++|++.++
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~   90 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVA   90 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHH
Confidence            467999999999999976 666666 9999999999999987664

>PRK05855 short chain dehydrogenase; Validated

Probab=92.94  E-value=0.28  Score=46.38  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=35.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..+++.+...|++|+.++++.++.+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~  354 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAER  354 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            45789999999999999998888899999999998766543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=92.92  E-value=0.58  Score=40.82  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~  243 (256)
                      .+.+++|.|| |++|.+++..+...|++ |+++.++.
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            5789999995 99999999888889995 99998875

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.62  E-value=0.29  Score=45.20  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +|.++||.|++|++|..+++.+...|++|+++++.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999998874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.62  E-value=0.25  Score=48.00  Aligned_cols=35  Identities=17%  Similarity=0.032  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|++|+|+| +|+.|+.++..++..|.+|++++..+
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            489999999 59999999999999999999998765

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.52  E-value=0.36  Score=45.08  Aligned_cols=46  Identities=24%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-----hHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-----KAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~-----~~~~~~~~Ga  254 (256)
                      .+.+|+|+| .|++|+.++..++..|++|++++..+.     ..+.+++.|+
T Consensus        15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv   65 (480)
T PRK01438         15 QGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA   65 (480)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC
Confidence            577999999 599999999999999999999986542     2345666675

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.38  E-value=0.38  Score=41.71  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.++||.||+|++|..++......|++|+.+.++.
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478999999999999999988888999999888764

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=92.31  E-value=0.17  Score=26.45  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=14.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP   94 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~   94 (256)
                      |||+++.   +++++.++++|.|.+
T Consensus         1 MkAv~y~---G~~~v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYH---GPKDVRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEE---ETTEEEEEEE----S
T ss_pred             CcceEEe---CCCceEEEECCCccc
Confidence            8999999   566699999998865

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=92.08  E-value=0.83  Score=41.35  Aligned_cols=54  Identities=26%  Similarity=0.361  Sum_probs=44.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|.+.+|...+|..|.+++..|+.+|.+++++..   +.+|.+.++.+||+
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~  159 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAE  159 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            3345788877777787999999999999999998777754   36789999999985

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.07  E-value=0.68  Score=34.03  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=36.3

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      |+|.| .|.+|..+++.++..+.+|++++.++++.+.+++.|.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~   42 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV   42 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS
T ss_pred             eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc
Confidence            67889 6999999999999977799999999999998887774

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.06  E-value=0.26  Score=43.92  Aligned_cols=47  Identities=34%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      |||--++....+ ++.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            455555443333 45789999999999999999999899999999874

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.03  E-value=0.41  Score=41.69  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=32.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      -.|+.|||.||.+|+|.+.++=...+|++++.+|.+.+
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~   73 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ   73 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc
Confidence            36899999999999999877777778999888887643

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.88  E-value=0.89  Score=42.12  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      -.|.+|+|.| .|.||..+++.+..+|++|+++..++
T Consensus       235 l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSG-SGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            3789999999 79999999999999999999555443

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.86  E-value=0.87  Score=39.76  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=29.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~  243 (256)
                      .+.+++|+| +|+.+.+++..+...|+ +|+++.+++
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            567999999 59999987777777898 799998884

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.80  E-value=1.1  Score=35.79  Aligned_cols=57  Identities=23%  Similarity=0.106  Sum_probs=40.5

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG-VGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      .|+...++...+.....--.|.+|+|.|+ |. +|..++..++..|++|+++.++.+++
T Consensus        24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~~l   81 (168)
T cd01080          24 IPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTKNL   81 (168)
T ss_pred             cCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCchhH
Confidence            34444444444444433357899999995 76 59989999999999999888875433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.77  E-value=0.97  Score=37.96  Aligned_cols=44  Identities=23%  Similarity=0.202  Sum_probs=33.7

Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe---EEEEeCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT---VIGTVST  242 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~---Vi~~~~~  242 (256)
                      .+++....--.+.+++|+| +|+.|..++..+...|++   ++.++++
T Consensus        14 ~al~~~g~~l~~~rvlvlG-AGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          14 NALKLVGKKIEEVKIVING-AGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             HHHHHhCCCccCCEEEEEC-chHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            3444432224678999999 599999999988888985   8888887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.56  E-value=0.39  Score=43.74  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      +-..+.+|||.||+|.+|..++..+...|.+|++++++..+
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            45678899999999999999999888899999999987643

>TIGR01138 cysM cysteine synthase B

Probab=91.46  E-value=1.3  Score=38.54  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=41.1

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+|++|+.. .+|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        54 g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~  107 (290)
T TIGR01138        54 GEIKPGDVLIEA-TSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAE  107 (290)
T ss_pred             CCCCCCCEEEEE-CCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence            445677776665 4899999999999999998777665   36789999999985

Alternate name: O-acetylserine (thiol)-lyase

>PRK11761 cysM cysteine synthase B; Provisional

Probab=91.36  E-value=1.3  Score=38.70  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+|++|+... +|..|++++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        58 g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~  111 (296)
T PRK11761         58 GEIKPGDTLIEAT-SGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAE  111 (296)
T ss_pred             CCCCCCCEEEEeC-CChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            4467788776655 899999999999999998777664   36789999999985

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=91.30  E-value=1.8  Score=33.47  Aligned_cols=46  Identities=35%  Similarity=0.373  Sum_probs=36.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHH-HHhCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQ-AKDDG  253 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~-~~~~G  253 (256)
                      ..+.+++|.| +|.+|...++.+...| .+|++++++.++.+. +++++
T Consensus        17 ~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~   64 (155)
T cd01065          17 LKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG   64 (155)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence            4578899999 5999999999888886 589999998777654 45555

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=91.25  E-value=0.79  Score=41.71  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=33.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      -.|.+|.|.| .|.+|..+++.+...|++|+++..+..
T Consensus       205 l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         205 LEGARVAVQG-FGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             cCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4899999999 799999999999888999999988765

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=91.23  E-value=0.75  Score=38.21  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=35.7

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~  250 (256)
                      ....+++|++||-+|  +|.|..++-+|+..|.  +|+.++..++-.+.++
T Consensus        66 ~~L~l~pg~~VLeIG--tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~  114 (209)
T PF01135_consen   66 EALDLKPGDRVLEIG--TGSGYQAALLAHLVGPVGRVVSVERDPELAERAR  114 (209)
T ss_dssp             HHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred             HHHhcCCCCEEEEec--CCCcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence            556799999999999  6789999999999875  6999998876555543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.22  E-value=0.78  Score=38.00  Aligned_cols=50  Identities=26%  Similarity=0.347  Sum_probs=40.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH----HHhCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ----AKDDGC  254 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~----~~~~Ga  254 (256)
                      ....+++|++||=+|  +|.|..++-+|+..| +|+.+.+.++=.+.    ++.+|.
T Consensus        66 ~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~  119 (209)
T COG2518          66 QLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY  119 (209)
T ss_pred             HHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC
Confidence            456899999999999  678999999999998 99999998664444    455665

>PRK07574 formate dehydrogenase; Provisional

Probab=91.07  E-value=0.5  Score=42.99  Aligned_cols=46  Identities=20%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.....+..+++|+
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence            578999999 7999999999999999999999987533344444553

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=91.04  E-value=0.6  Score=44.37  Aligned_cols=41  Identities=32%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.+++|.|+ |++|.+++..+...|++|+++.++.++.+.+
T Consensus       378 ~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~l  418 (529)
T PLN02520        378 AGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKEL  418 (529)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            4678999995 9999999999999999999999987776544

>PLN02427 UDP-apiose/xylose synthase

Probab=91.04  E-value=0.58  Score=42.26  Aligned_cols=43  Identities=21%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~  249 (256)
                      -+..+|||.||+|-+|..+++.+... |.+|++++++.++.+.+
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l   55 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL   55 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh
Confidence            34568999999999999988888877 58999999776554443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=90.80  E-value=0.7  Score=40.99  Aligned_cols=47  Identities=28%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      =.|.+|.|+| .|.+|...++.++..|.+|++.++.....+.+++.|+
T Consensus        14 LkgKtVGIIG-~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         14 LQGKTVAVIG-YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hCcCEEEEEe-EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC
Confidence            3688999999 7999999999999999999988766544556666665

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=90.74  E-value=1.2  Score=32.71  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=37.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~  250 (256)
                      ....+.++++|+-.| +|. |..+..+++..+ .+|++++.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            334677888999999 455 999999999874 69999999988777654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.60  E-value=0.72  Score=43.15  Aligned_cols=47  Identities=21%  Similarity=0.244  Sum_probs=37.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      -.+.+|+|+| .|+.|++++.++...|++|++.+....+.. .+.++|+
T Consensus        13 ~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi   60 (473)
T PRK00141         13 ELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGV   60 (473)
T ss_pred             ccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCc
Confidence            3567899999 699999999999999999999997654433 3455564

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.47  E-value=0.62  Score=44.48  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=40.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ++++|.| .|.+|..+++..+..|.++++++.++++.+.+++.|.
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~  461 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGI  461 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC
Confidence            6789999 7999999999999999999999999999999988774

>PLN03139 formate dehydrogenase; Provisional

Probab=90.24  E-value=0.63  Score=42.35  Aligned_cols=46  Identities=26%  Similarity=0.323  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.....+..+++|+
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            578999999 7999999999999999999999876444444455553

>PRK10717 cysteine synthase A; Provisional

Probab=90.17  E-value=1.9  Score=38.24  Aligned_cols=51  Identities=25%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|++|+... +|..|+++...|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus        59 g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~  112 (330)
T PRK10717         59 GLLKPGGTIVEGT-AGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAE  112 (330)
T ss_pred             CCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence            3467788766654 899999999999999997666664   36688999999985

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=90.15  E-value=1  Score=37.04  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=36.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga  254 (256)
                      ..++|.|++.++|.+..|.....|++|.+.+.+.+. .+.++.+|.
T Consensus        15 k~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g   60 (256)
T KOG1200|consen   15 KVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG   60 (256)
T ss_pred             ceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence            457899999999999999999999999999976543 344566664

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.13  E-value=2.2  Score=35.56  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|+| .|.+|..+++.+...|++++++..+
T Consensus        22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD~   55 (217)
T cd05211          22 EGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSDP   55 (217)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            688999999 7999999999999999976665544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=90.07  E-value=1.5  Score=36.37  Aligned_cols=48  Identities=25%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++|++||-.|  .|.|..+..+++..+  .+|++++.+++-.+.+++
T Consensus        70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~  119 (212)
T PRK13942         70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK  119 (212)
T ss_pred             HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            445789999999998  677888888888875  589999999887766643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=90.06  E-value=2.1  Score=37.55  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHH
Q 036416          146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGS  223 (256)
Q Consensus       146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~  223 (256)
                      .+++|++.++.++    |.+|..-.....+++.+++.|-    .+....|++.  ++..  .+++|.+||=.|  .|.|.
T Consensus       108 P~rig~~f~I~Ps----w~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~--~~~~g~~vlDvG--cGSGI  175 (300)
T COG2264         108 PVRIGERFVIVPS----WREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEK--LLKKGKTVLDVG--CGSGI  175 (300)
T ss_pred             cEEeeeeEEECCC----CccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHH--hhcCCCEEEEec--CChhH
Confidence            3678998887764    4444322234567777777553    3556666664  3333  367999999998  56687


Q ss_pred             HHHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416          224 LLCQWANALGA-TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       224 ~ai~la~~~ga-~Vi~~~~~~~~~~~~~  250 (256)
                      ++|..++ +|| +|+++|-++--.+.++
T Consensus       176 LaIAa~k-LGA~~v~g~DiDp~AV~aa~  202 (300)
T COG2264         176 LAIAAAK-LGAKKVVGVDIDPQAVEAAR  202 (300)
T ss_pred             HHHHHHH-cCCceEEEecCCHHHHHHHH
Confidence            7776665 677 6999998876555443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.94  E-value=0.71  Score=44.76  Aligned_cols=45  Identities=13%  Similarity=0.163  Sum_probs=41.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .++|+|.| .|.+|+.+++.++..|.++++++.++++.+.++++|.
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~  444 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGM  444 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCC
Confidence            36799999 7999999999999999999999999999999998875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.93  E-value=0.78  Score=36.26  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=27.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV  240 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~  240 (256)
                      .|.+|+|.|| |.+|..-++.....|++|+++.
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence            5789999995 9999988888888999988885

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=89.91  E-value=0.96  Score=41.14  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             CCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSL--LCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~--ai~la~~~ga~Vi~~~~  241 (256)
                      ..|+++||.|+++++|++  +++.+ ..|++++++..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence            456899999999999999  55666 78999888873

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=89.88  E-value=1.8  Score=40.58  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=35.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.+++|.| +|++|.+++..+...|++|+++.+++++.+.+
T Consensus       331 ~~k~vlIiG-aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~l  371 (477)
T PRK09310        331 NNQHVAIVG-AGGAAKAIATTLARAGAELLIFNRTKAHAEAL  371 (477)
T ss_pred             CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            567899999 59999999999999999999999887776544

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.82  E-value=0.86  Score=31.27  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +|+|.| +|.+|+-++..++..|.+|+.+.+.+.
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999 599999999999999999999987643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01139 cysK cysteine synthase A

Probab=89.76  E-value=2.3  Score=37.05  Aligned_cols=51  Identities=27%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+|++| |...+|..|.+++..|+..|.+.+++..   ++.|.+.++.+||+
T Consensus        52 g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~  105 (298)
T TIGR01139        52 GLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAE  105 (298)
T ss_pred             CCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCE
Confidence            345677776 5555899999999999999997666665   36688899999985

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.65  E-value=0.74  Score=39.24  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+.+-.+++|+| +|.++...+++|+.+|++|++++..++
T Consensus        96 ~~~p~~~L~IfG-aG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFG-AGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEEC-CcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            456778999999 599999999999999999999987654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN00011 cysteine synthase

Probab=89.63  E-value=2.1  Score=37.91  Aligned_cols=53  Identities=26%  Similarity=0.288  Sum_probs=41.6

Q ss_pred             HHcCCCCC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPG-HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g-~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+.+| ++|+ ...+|..|++++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        61 ~~g~~~~g~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~  117 (323)
T PLN00011         61 DKGLITPGKSTLI-EATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAE  117 (323)
T ss_pred             HcCCCCCCCcEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Confidence            33457788 5554 566899999999999999998777765   35788999999985

>PLN02572 UDP-sulfoquinovose synthase

Probab=89.61  E-value=0.61  Score=43.23  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=30.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      ..+.+|||.||+|.+|..+++.+...|.+|+++++
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            35678999999999999999999889999999863

>TIGR01136 cysKM cysteine synthases

Probab=89.61  E-value=2.4  Score=37.05  Aligned_cols=51  Identities=27%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+|++|+ ...+|..|.++...|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus        53 g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~  106 (299)
T TIGR01136        53 GLLKPGDTII-EATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAE  106 (299)
T ss_pred             CCCCCCCEEE-EeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence            3456778765 555899999999999999997666554   46788999999985

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.58  E-value=1.6  Score=37.33  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -+|.+|+|.| .|.+|+.+++++..+|++|+++..
T Consensus        36 l~g~~vaIqG-fGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          36 LKGKRVAISG-SGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC
Confidence            3688999999 799999999999999999997765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=89.57  E-value=2  Score=39.50  Aligned_cols=46  Identities=30%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDG  253 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~G  253 (256)
                      -.|.+|+|.| +|++|.+++..+...|+ +++++.++.+|.+ ++.++|
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            4578999999 59999999999999997 6888999877755 445565

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=89.38  E-value=2.2  Score=39.51  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=41.9

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.+|++|+-.. +|..|.+++..|+.+|.+++++..   +++|.+.++.+||+
T Consensus        57 g~~~~g~~vv~~s-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  110 (454)
T TIGR01137        57 GRLKPGDTIIEPT-SGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAE  110 (454)
T ss_pred             CCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCE
Confidence            4457788776664 899999999999999998777775   46789999999985

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=89.32  E-value=1.6  Score=38.70  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=37.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~  250 (256)
                      ....++++++||..| +| .|..++.+++..+.  .|++++.+++..+.++
T Consensus        74 ~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar  122 (322)
T PRK13943         74 EWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK  122 (322)
T ss_pred             HhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            345788999999999 45 69999999998864  6999999987665554

>PRK13243 glyoxylate reductase; Reviewed

Probab=89.25  E-value=0.97  Score=40.28  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  184 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRK  184 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            578999999 799999999999999999999998644

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.13  E-value=2.4  Score=37.97  Aligned_cols=47  Identities=26%  Similarity=0.515  Sum_probs=36.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHH-cCC-eEEEEeCChhhHHHH-HhCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANA-LGA-TVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~-~ga-~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      -.+.+|+|.||+|.+|..+++.+.. .|+ +++.+.++.++...+ ++++
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~  202 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG  202 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc
Confidence            3678999999999999988887754 465 788888887776654 3443

>PRK08317 hypothetical protein; Provisional

Probab=89.12  E-value=1.5  Score=36.20  Aligned_cols=49  Identities=29%  Similarity=0.398  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHhC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~~  252 (256)
                      ....++++++||-.| +|. |..+..+++..+  +++++++.+++..+.+++.
T Consensus        13 ~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         13 ELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            456788999999999 454 889999998873  5899999998887777653

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.97  E-value=2.4  Score=36.98  Aligned_cols=57  Identities=12%  Similarity=0.029  Sum_probs=42.4

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      +|++..+.+..+....---.|.+|+|.|.+.-+|..++.++...||+|+.+.+....
T Consensus       138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~  194 (286)
T PRK14175        138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKD  194 (286)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh
Confidence            466666666666544222479999999975559999999999999999988875433

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=88.89  E-value=1.5  Score=30.23  Aligned_cols=37  Identities=30%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHH-HHHHHcCCeEEEEeC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLC-QWANALGATVIGTVS  241 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai-~la~~~ga~Vi~~~~  241 (256)
                      .++-.++|||+|++++.|++.- .+|-..||+.+.+.-
T Consensus        35 ~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f   72 (78)
T PF12242_consen   35 KINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF   72 (78)
T ss_dssp             --TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred             CCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence            4534489999999999999853 344456788877764

>PRK14030 glutamate dehydrogenase; Provisional

Probab=88.86  E-value=2.3  Score=39.45  Aligned_cols=32  Identities=34%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGT  239 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~  239 (256)
                      -.|.+|+|.| .|.||..+++.+...|++|+++
T Consensus       226 l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        226 IKGKTVAISG-FGNVAWGAATKATELGAKVVTI  257 (445)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEE
Confidence            3689999999 7999999999999999999994

>PRK14967 putative methyltransferase; Provisional

Probab=88.80  E-value=2.1  Score=35.64  Aligned_cols=45  Identities=29%  Similarity=0.342  Sum_probs=35.9

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++++||-.| +|. |..++.+++. ++ +|++++.+++..+.+++
T Consensus        32 ~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         32 EGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             cccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            3578899999999 565 9888888875 66 89999999887765543

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=88.78  E-value=1.4  Score=38.33  Aligned_cols=46  Identities=17%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ++.|+..+ +|..|.+++..|+..|.+++++..   +++|++.++.+|++
T Consensus        65 ~~~iv~~s-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~  113 (304)
T cd01562          65 AKGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAE  113 (304)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            45566655 799999999999999998777765   36688899999974

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PLN02206 UDP-glucuronate decarboxylase

Probab=88.57  E-value=0.86  Score=42.26  Aligned_cols=35  Identities=34%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .++.+|||.||+|-+|..+++.+...|.+|+++++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~  151 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN  151 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence            35689999999999999999999999999999875

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=88.51  E-value=0.96  Score=40.20  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.++.|+| .|.+|.++++.++..|++|+..++.+.
T Consensus       145 ~gktvGIiG-~GrIG~avA~r~~~Fgm~v~y~~~~~~  180 (324)
T COG1052         145 RGKTLGIIG-LGRIGQAVARRLKGFGMKVLYYDRSPN  180 (324)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            489999999 799999999999988999999998754

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=88.39  E-value=0.92  Score=40.89  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=32.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ..+.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            467899999999999999999999999999999864

>PLN02928 oxidoreductase family protein

Probab=88.36  E-value=0.89  Score=40.80  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++++++
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence            578999999 7999999999999999999999876

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.13  E-value=1.2  Score=43.02  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=40.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +.|+|.| .|.+|..+++..+..|.++++++.++++.+.++++|.
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~  444 (601)
T PRK03659        401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGY  444 (601)
T ss_pred             CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCC
Confidence            5799999 6999999999999999999999999999999998874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=88.05  E-value=0.65  Score=33.80  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|||.|+ |.+|..-++.+...||+|+++....
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            5789999995 9999999999999999999999874

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=88.04  E-value=2.7  Score=36.94  Aligned_cols=44  Identities=27%  Similarity=0.347  Sum_probs=36.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      -.+..|+|.|..+|.|...+.-+...|.+|++.+.+++..+.++
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~   70 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLR   70 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHh
Confidence            35567999999999999988888889999999998776655543

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=87.94  E-value=3.5  Score=37.81  Aligned_cols=44  Identities=23%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      -+|...+|..|+.++..|+.+|.+++++..   +++|.+.++.+||+
T Consensus       136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAe  182 (404)
T cd06447         136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVT  182 (404)
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCE
Confidence            466666899999999999999998666664   47889999999985

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=87.84  E-value=1  Score=39.75  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~~d~~  177 (311)
T PRK08410        144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVYYSTS  177 (311)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEEECCC
Confidence            588999999 7999999999999999999999875

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.66  E-value=1.5  Score=40.80  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .+.+|+|+| .|..|++++++++..|++|++.|..+
T Consensus        13 ~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         13 KNKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             cCCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            367899999 69999999999999999999999754

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=87.61  E-value=1.1  Score=41.50  Aligned_cols=36  Identities=25%  Similarity=0.196  Sum_probs=32.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +++.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            456789999999999999999998899999999864

>PLN02970 serine racemase

Probab=87.42  E-value=2.4  Score=37.66  Aligned_cols=45  Identities=18%  Similarity=0.101  Sum_probs=36.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +.|+.. .+|..|.+++..|+.+|.+++++..   +++|.+.++.+||+
T Consensus        76 ~~vv~a-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~  123 (328)
T PLN02970         76 KGVVTH-SSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGI  123 (328)
T ss_pred             CeEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCE
Confidence            445554 5899999999999999998777775   46788899999985

>PRK14031 glutamate dehydrogenase; Provisional

Probab=87.40  E-value=2.4  Score=39.36  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.|.+|+|.| .|.||..+++.+...|++|+++..
T Consensus       226 l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        226 LKGKVCLVSG-SGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC
Confidence            3689999999 699999999999999999998554

>PRK06110 hypothetical protein; Provisional

Probab=87.33  E-value=2.6  Score=37.30  Aligned_cols=45  Identities=24%  Similarity=0.220  Sum_probs=36.2

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+|...+|..|++++..|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus        71 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~  118 (322)
T PRK06110         71 RGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAE  118 (322)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence            3467777899999999999999997666654   36788889999985

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=87.28  E-value=3.9  Score=31.66  Aligned_cols=54  Identities=24%  Similarity=0.127  Sum_probs=40.7

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +++........+....---.|.+|+|+|.+..+|.-++.++...|++|+.+.+.
T Consensus         8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~   61 (140)
T cd05212           8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK   61 (140)
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence            344444445555444222479999999999999999999999999999999854

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02477 glutamate dehydrogenase

Probab=87.25  E-value=2.4  Score=38.91  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|.| .|.||..+++++...|++|+++..+
T Consensus       205 ~g~~VaIqG-fGnVG~~~A~~L~e~GakVVaVsD~  238 (410)
T PLN02477        205 AGQTFVIQG-FGNVGSWAAQLIHEKGGKIVAVSDI  238 (410)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEECC
Confidence            689999999 7999999999999999999966543

>PLN02356 phosphateglycerate kinase

Probab=87.24  E-value=3.3  Score=38.22  Aligned_cols=50  Identities=24%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .++++..| +...+|..|.+++.+|+.+|.+++++..   +++|.+.++.+||+
T Consensus       100 ~~~~~g~V-veaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAe  152 (423)
T PLN02356        100 QLFPGGVV-TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGAT  152 (423)
T ss_pred             ccCCCCEE-EEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCE
Confidence            44566654 4445899999999999999998777764   37889999999985

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.14  E-value=2.8  Score=29.56  Aligned_cols=43  Identities=37%  Similarity=0.375  Sum_probs=34.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC---CeEEEE-eCChhhHHHH-HhCCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALG---ATVIGT-VSTKEKAAQA-KDDGC  254 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~g---a~Vi~~-~~~~~~~~~~-~~~Ga  254 (256)
                      +|.|+| +|.+|.+.+.-....|   .+|+.+ .+++++.+.+ +++|+
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~   48 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV   48 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc
Confidence            477888 7999999999999999   788855 8888887655 56664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.13  E-value=2.6  Score=37.12  Aligned_cols=148  Identities=21%  Similarity=0.084  Sum_probs=80.9

Q ss_pred             CCeEEEEEeEEeeCh-hhhHhH-hCCCCCCCCCCCCC-cccEEEEEEe-CCCCCccCCCCEEEEeCCCC-----------
Q 036416           96 EGEIRVRNKAIGLNF-IDVYYR-KGVYKPAKMPFTPG-MEAVGEVVAV-GPGLTGRTVGDIIAYAGGAM-----------  160 (256)
Q Consensus        96 ~~eVlVkv~~~~i~~-~D~~~~-~g~~~~~~~p~~lG-~e~~G~V~~v-G~~v~~~~~Gd~V~~~~~~~-----------  160 (256)
                      -+||+|+..+..-.+ .|..+. .|..-.....-+++ .|.+=.|-+- -++..-|+.|+..+.+-+..           
T Consensus        30 GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt~~l~~  109 (371)
T COG0686          30 GHEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELTEALLK  109 (371)
T ss_pred             CcEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEEecCCChhhhhhhcCCcEEEEEeeecCChHHHHHHHH
Confidence            468999988766533 343332 23211111112333 4444444331 12233488999888765321           


Q ss_pred             -ccee-eEEEecCCCeEECCCC-----CCHHHHhhhchhHHHHHHHHHHHc----------CCCCCCEEEEecCCChHHH
Q 036416          161 -GSYA-EEQILPANKVVPVPSS-----IDPVIAASIMLKGMTAQFLLRRCF----------KVEPGHTVLIQAAAGGVGS  223 (256)
Q Consensus       161 -G~~a-~~~~v~~~~~~~ip~~-----~~~~~aa~l~~~~~ta~~~l~~~~----------~~~~g~~VlI~ga~g~vG~  223 (256)
                       |.-+ -|-      .+..|++     -+..+.|.-......|++..+..+          ++.+ .+|.|+|+ |-+|.
T Consensus       110 ~gvtaIayE------TV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~-~kv~iiGG-Gvvgt  181 (371)
T COG0686         110 SGVTAIAYE------TVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLP-AKVVVLGG-GVVGT  181 (371)
T ss_pred             cCcceEEEE------EEEcCCCCCcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCC-ccEEEECC-ccccc
Confidence             1111 111      1222331     233444433334444555322221          1233 45777884 99999


Q ss_pred             HHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          224 LLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       224 ~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      -++.+|..+||+|+..+.+.+|++.+..
T Consensus       182 naAkiA~glgA~Vtild~n~~rl~~ldd  209 (371)
T COG0686         182 NAAKIAIGLGADVTILDLNIDRLRQLDD  209 (371)
T ss_pred             hHHHHHhccCCeeEEEecCHHHHhhhhH
Confidence            9999999999999999999999988865

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=87.10  E-value=2.8  Score=34.62  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~  250 (256)
                      ....+++|++||=.|  .|.|..++.+++..+.  +|++++.+++-.+.++
T Consensus        71 ~~l~~~~~~~VLDiG--~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~  119 (215)
T TIGR00080        71 ELLELKPGMKVLEIG--TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE  119 (215)
T ss_pred             HHhCCCCcCEEEEEC--CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            445789999999998  6678888888888654  6999999888776654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=86.86  E-value=3.7  Score=32.62  Aligned_cols=57  Identities=21%  Similarity=0.062  Sum_probs=38.2

Q ss_pred             hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+|++..+.+..|....---.|++|+|.|.+..+|.-+..+....||.|+......+
T Consensus        15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~   71 (160)
T PF02882_consen   15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK   71 (160)
T ss_dssp             S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS
T ss_pred             CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC
Confidence            345555555666655422358999999998889999999999999999998776543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08198 threonine dehydratase; Provisional

Probab=86.85  E-value=2.5  Score=38.62  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .++.|+..+ +|..|++++..|+.+|.+.+++..   +..|.+.++.+||+
T Consensus        69 ~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  118 (404)
T PRK08198         69 RARGVVAAS-AGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAE  118 (404)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence            356666665 799999999999999997666654   46788899999985

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=86.81  E-value=1.9  Score=40.29  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +.+.+|+|+| +|+.|+.++..++..|.+|++++..
T Consensus       141 ~~~~~VvIIG-aGpAGl~aA~~l~~~G~~V~vie~~  175 (471)
T PRK12810        141 RTGKKVAVVG-SGPAGLAAADQLARAGHKVTVFERA  175 (471)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEecC
Confidence            4578999999 5999999999999999999998864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=86.80  E-value=1.4  Score=42.91  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..+++|+|+| +|+.|+.++..+...|.+|++++..+
T Consensus       191 ~~~k~VaIIG-aGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIG-AGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4578999999 59999999999999999999998754

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=86.80  E-value=4.9  Score=33.76  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|.| .|.+|..+++++...|++|+++..+
T Consensus        30 ~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQG-FGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence            578999999 7999999999999999999966543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=86.80  E-value=1.1  Score=39.81  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      |.+|.|+| .|.+|..+++.++..|++|++.+.
T Consensus       142 gkTvGIiG-~G~IG~~va~~l~afgm~v~~~d~  173 (324)
T COG0111         142 GKTVGIIG-LGRIGRAVAKRLKAFGMKVIGYDP  173 (324)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEECC
Confidence            78999999 799999999999999999999998

>PRK13984 putative oxidoreductase; Provisional

Probab=86.79  E-value=1.9  Score=41.51  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .+.+++|+|.| +|+.|+.++..++..|.+|++++..
T Consensus       280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v~vie~~  315 (604)
T PRK13984        280 EKKNKKVAIVG-SGPAGLSAAYFLATMGYEVTVYESL  315 (604)
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46789999999 6999999999999999999888754

>PRK07402 precorrin-6B methylase; Provisional

Probab=86.77  E-value=2.7  Score=34.13  Aligned_cols=49  Identities=16%  Similarity=0.197  Sum_probs=36.3

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~  250 (256)
                      +.....++++++||=.|  .|.|..++.+++.. +.+|++++.+++..+.++
T Consensus        32 l~~~l~~~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~   81 (196)
T PRK07402         32 LISQLRLEPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR   81 (196)
T ss_pred             HHHhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            33445778899887776  56676777777664 579999999988777664

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=86.77  E-value=1.8  Score=40.61  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ..+.+|+|+| +|..|+.++..++..|.+|++++..
T Consensus       141 ~~~~~V~IIG-aG~aGl~aA~~L~~~g~~V~v~e~~  175 (485)
T TIGR01317       141 RTGKKVAVVG-SGPAGLAAADQLNRAGHTVTVFERE  175 (485)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEecC
Confidence            4578999999 5999999999999999999888754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=86.68  E-value=1.2  Score=39.40  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~~~~~~  179 (314)
T PRK06932        146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVLYAEHK  179 (314)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCC
Confidence            478999999 7999999999999999999998764

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=86.59  E-value=5  Score=34.80  Aligned_cols=49  Identities=27%  Similarity=0.360  Sum_probs=38.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .++|++|+. ..+|..|++++..|+.+|.+.+++..   ++.|++.++.+||+
T Consensus        50 ~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~  101 (291)
T cd01561          50 LKPGTTIIE-PTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAE  101 (291)
T ss_pred             CCCCCEEEE-eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence            445666655 56899999999999999997666654   36788999999985

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=86.56  E-value=1.3  Score=39.25  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLG-HGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence            578999999 7999999999999999999998864

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=86.51  E-value=1.5  Score=40.09  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      +-..-+.|+|.||+|.+|+..++.++..|..|.+.+++.++.
T Consensus        75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a  116 (411)
T KOG1203|consen   75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKA  116 (411)
T ss_pred             CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhh
Confidence            345567899999999999999999999999999999986553

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.48  E-value=3.5  Score=33.87  Aligned_cols=47  Identities=26%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~  250 (256)
                      ....+++|++||=.|  .|.|..++.+++..+  .+|++++.+++-.+.++
T Consensus        66 ~~l~~~~~~~VLDiG--~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~  114 (205)
T PRK13944         66 ELIEPRPGMKILEVG--TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA  114 (205)
T ss_pred             HhcCCCCCCEEEEEC--cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            445788999999998  567888888888774  58999999987665554

>PRK07048 serine/threonine dehydratase; Validated

Probab=86.26  E-value=2.9  Score=36.92  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +.|+..+ +|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        73 ~~vv~aS-sGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAe  120 (321)
T PRK07048         73 AGVVTFS-SGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGE  120 (321)
T ss_pred             CcEEEeC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence            3455555 799999999999999998766664   36688899999984

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.23  E-value=4.1  Score=35.49  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=30.9

Q ss_pred             CCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCCh
Q 036416          206 VEPGHTVLIQAAAGG-VGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      --.|.+|+|.|+ |+ +|..++.++...|++|+++.+..
T Consensus       156 ~l~Gk~vvViG~-gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        156 ELAGKHAVVVGR-SAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            357899999995 65 99999999999999888777643

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=86.18  E-value=2.6  Score=32.51  Aligned_cols=36  Identities=33%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhH
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKA  246 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~  246 (256)
                      +|.|+|++|.+|..++..+...+.  ++..++..+++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~   39 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA   39 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence            689999889999999999988876  799999886653

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=85.95  E-value=4.2  Score=34.16  Aligned_cols=47  Identities=28%  Similarity=0.380  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +++.| |...+|..|.+++..|+..|.+++++..   ++.+.+.++.+|++
T Consensus        49 ~~~~v-v~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~   98 (244)
T cd00640          49 PKGVI-IESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAE   98 (244)
T ss_pred             CCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence            35554 4454799999999999999998777765   46778888999974

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>PRK06436 glycerate dehydrogenase; Provisional

Probab=85.86  E-value=1.6  Score=38.42  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..++++++..|++|++.+++
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~  154 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRS  154 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCC
Confidence            589999999 7999999999999999999999975

>PRK06381 threonine synthase; Validated

Probab=85.85  E-value=2.8  Score=36.93  Aligned_cols=47  Identities=13%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      |.+.+|.+.+|..|++++..|+..|.+.+++..   +..|.+.++.+||+
T Consensus        62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~  111 (319)
T PRK06381         62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAE  111 (319)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence            444566667899999999999999997666664   36788899999985

>PLN00203 glutamyl-tRNA reductase

Probab=85.85  E-value=2.7  Score=39.85  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=36.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH-HhC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA-KDD  252 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~-~~~  252 (256)
                      .+.+|+|+| +|.+|.+++..+...|+ +|+++.++.++.+.+ .++
T Consensus       265 ~~kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        265 ASARVLVIG-AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCEEEEEe-CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            368899999 59999999999999998 699999998886655 345

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=85.75  E-value=2  Score=38.29  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|++.+++++.
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            567899999 7999999999999999999999987643

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=85.73  E-value=3.3  Score=36.59  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=38.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .++++|+..+ +|..|.+++..|+..|.+++++..   ++.|.+.++.+||+
T Consensus        49 ~~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~   99 (316)
T cd06448          49 NECVHVVCSS-GGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGAT   99 (316)
T ss_pred             ccCCeEEEeC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            3467776666 799999999999999998666664   46788999999984

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=85.53  E-value=1.6  Score=40.02  Aligned_cols=35  Identities=34%  Similarity=0.400  Sum_probs=31.4

Q ss_pred             CCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAA----------------AGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga----------------~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|||.||                +|.+|.++++.+...|++|+.++++
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~  237 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP  237 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence            6899999998                6679999999999999999988765

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=85.52  E-value=4.8  Score=37.27  Aligned_cols=45  Identities=20%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +-+|.+.+|..|+.++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus       153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAe  200 (431)
T TIGR02035       153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVT  200 (431)
T ss_pred             ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            3566667899999999999999997666654   47789999999985

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=85.50  E-value=2.4  Score=34.62  Aligned_cols=44  Identities=20%  Similarity=0.030  Sum_probs=34.2

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+..++.+||-.|  .|.|..+..+|+. |++|++++.+++-.+.++
T Consensus        26 l~~~~~~~vLDiG--cG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~   69 (197)
T PRK11207         26 VKVVKPGKTLDLG--CGNGRNSLYLAAN-GFDVTAWDKNPMSIANLE   69 (197)
T ss_pred             cccCCCCcEEEEC--CCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence            3556778999998  4558888888874 889999999987665554

>PLN02256 arogenate dehydrogenase

Probab=85.26  E-value=3.7  Score=36.15  Aligned_cols=51  Identities=20%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +..+-..+.+|.|+| .|.+|...+..++..|.+|+++++++. .+.++++|+
T Consensus        29 ~~~~~~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv   79 (304)
T PLN02256         29 EELEKSRKLKIGIVG-FGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGV   79 (304)
T ss_pred             HhhccCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCC
Confidence            333444667899999 699999988888888889999998764 455666665

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=85.10  E-value=2.5  Score=32.30  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=26.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcC--CeEEEEeCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALG--ATVIGTVST  242 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~  242 (256)
                      |.|.|++|++|..++++.+...  ++|++....
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            6799999999999999999987  677777653

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=85.05  E-value=1.7  Score=38.37  Aligned_cols=36  Identities=22%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|+++++..+
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRK  170 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            678999999 799999999999999999999987543

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=84.79  E-value=1.8  Score=42.31  Aligned_cols=39  Identities=21%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKE  244 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~  244 (256)
                      .+++.+|||.||+|-+|..+++.+... |.+|+++++.+.
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~  351 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD  351 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence            367789999999999999999888765 689999987654

>PRK06608 threonine dehydratase; Provisional

Probab=84.66  E-value=4  Score=36.47  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      -+|...+|..|++++..|+..|.+.+++..   +++|.+.++.+||+
T Consensus        74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~  120 (338)
T PRK06608         74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGE  120 (338)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence            345556899999999999999997666554   47789999999985

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=84.56  E-value=4.9  Score=27.97  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=27.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~  241 (256)
                      -.+.+++|.| +|.+|..+++.+...+ .++.+.++
T Consensus        21 ~~~~~v~i~G-~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLG-AGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4678999999 5999999999998884 46666543

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61

Probab=84.36  E-value=4.4  Score=27.49  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.3

Q ss_pred             CCCEEEEecCC-ChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAA-GGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~-g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -++.+||+|++ .+...++.+.|+..|..++..-.
T Consensus        31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a   65 (71)
T PF10686_consen   31 HPDMVLVHGGAPKGADRIAARWARERGVPVIRFPA   65 (71)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence            36789999998 89999999999999998776544

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=84.20  E-value=2.8  Score=30.47  Aligned_cols=41  Identities=27%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             EEEEEEeCCCCC----ccCCCCEEEEeCCCCcc-----eeeEEEecCCCeE
Q 036416          134 VGEVVAVGPGLT----GRTVGDIIAYAGGAMGS-----YAEEQILPANKVV  175 (256)
Q Consensus       134 ~G~V~~vG~~v~----~~~~Gd~V~~~~~~~G~-----~a~~~~v~~~~~~  175 (256)
                      -|.|+++|++..    .+++||+|+.-.. .|.     =.+|+++.++.++
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y-~Gtevk~dg~ey~i~~e~DIL   95 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLPEF-GGSSVKVEGEEFFLYNEDSLL   95 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEcCC-CCcEEEECCEEEEEEEhHHEE
Confidence            599999999854    3899999985322 222     1456666655443

>PRK08246 threonine dehydratase; Provisional

Probab=84.16  E-value=5.1  Score=35.28  Aligned_cols=47  Identities=26%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ++++|+..- +|..|++++..|+..|.+++++..   ++.|.+.++.+|++
T Consensus        67 ~~~~vv~aS-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  116 (310)
T PRK08246         67 PAAGVVAAS-GGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAE  116 (310)
T ss_pred             cCCeEEEeC-CCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCE
Confidence            566665554 799999999999999997666654   36678899999985

>PRK08638 threonine dehydratase; Validated

Probab=84.15  E-value=4  Score=36.36  Aligned_cols=45  Identities=20%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +.|+..+ +|..|.+++..|+..|.+.+++..   ++.|.+.++.+||+
T Consensus        76 ~~vv~~S-sGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~  123 (333)
T PRK08638         76 KGVVACS-AGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAE  123 (333)
T ss_pred             CeEEEeC-CcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCE
Confidence            3455554 799999999999999997666654   36688899999984

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.14  E-value=7.2  Score=34.01  Aligned_cols=55  Identities=25%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             hchhHHHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          189 IMLKGMTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +|++..+....|... ++. .|.+|+|.|.+.-+|.-++.++...||.|++......
T Consensus       137 ~PcTp~avi~lL~~~-~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~  192 (285)
T PRK14191        137 VPATPMGVMRLLKHY-HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK  192 (285)
T ss_pred             CCCcHHHHHHHHHHh-CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH
Confidence            466666666666554 443 6999999997779999999999999999988765433

>PRK14968 putative methyltransferase; Provisional

Probab=84.07  E-value=3.1  Score=33.06  Aligned_cols=42  Identities=26%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      ..++++||-.|  .+.|..+..+++. +.+|++++.+++-.+.++
T Consensus        21 ~~~~~~vLd~G--~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~   62 (188)
T PRK14968         21 DKKGDRVLEVG--TGSGIVAIVAAKN-GKKVVGVDINPYAVECAK   62 (188)
T ss_pred             ccCCCEEEEEc--cccCHHHHHHHhh-cceEEEEECCHHHHHHHH
Confidence            36888999998  5667788888877 899999999987666553

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=84.02  E-value=5  Score=35.37  Aligned_cols=46  Identities=22%  Similarity=0.220  Sum_probs=36.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +++|+.. .+|..|.+++..|+.+|.+++++..   ++.+.+.++.+||+
T Consensus        70 ~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~  118 (324)
T cd01563          70 VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGAT  118 (324)
T ss_pred             CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCE
Confidence            5566655 4799999999999999998776664   46788899999985

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.74  E-value=2.1  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~~~d~~  183 (409)
T PRK11790        150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVYFYDIE  183 (409)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCC
Confidence            578999999 7999999999999999999999975

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=83.59  E-value=7.1  Score=35.86  Aligned_cols=47  Identities=28%  Similarity=0.329  Sum_probs=39.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      -.+.+|||+| +|-+|..++.-....|. +|++.-++.+|.+ +++++|+
T Consensus       176 L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~  224 (414)
T COG0373         176 LKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA  224 (414)
T ss_pred             cccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            3678999999 59999999999999996 7888888888754 6678885

>PRK09414 glutamate dehydrogenase; Provisional

Probab=83.58  E-value=4.7  Score=37.46  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.|.+|+|.| .|.||..+++++...|++|+++..
T Consensus       230 l~g~rVaIqG-fGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        230 FEGKRVVVSG-SGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence            3689999999 699999999999999999999844

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=83.18  E-value=3.2  Score=31.83  Aligned_cols=38  Identities=18%  Similarity=0.352  Sum_probs=26.3

Q ss_pred             HcCCCCCCEEEEecCCChHH--HHHHHHHHHcCCeEEEEe
Q 036416          203 CFKVEPGHTVLIQAAAGGVG--SLLCQWANALGATVIGTV  240 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG--~~ai~la~~~ga~Vi~~~  240 (256)
                      ..++++||.++++..+|...  ..+++.||.+|++||+++
T Consensus        98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT  137 (138)
T PF13580_consen   98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT  137 (138)
T ss_dssp             HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred             HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            34689999999987666444  568999999999999876

...

>PRK12831 putative oxidoreductase; Provisional

Probab=83.13  E-value=3.5  Score=38.47  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ...|++|+|+| .|.+|+-++..+..+|++|+.+.+.
T Consensus       278 ~~~gk~VvVIG-gG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        278 IKVGKKVAVVG-GGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             ccCCCeEEEEC-CcHHHHHHHHHHHHcCCEEEEEeec
Confidence            46789999999 5999999999999999998888763

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=83.04  E-value=2.3  Score=32.30  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      ..+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCc
Confidence            46899999 69999999999988999 67777764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=82.94  E-value=4.8  Score=32.74  Aligned_cols=50  Identities=24%  Similarity=0.346  Sum_probs=37.8

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHH----HhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQA----KDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~----~~~Ga~  255 (256)
                      ..+++|+.++=+|  -+.|..++++|+.. ..+||+++++++..+..    ++||++
T Consensus        30 L~~~~g~~l~DIG--aGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~   84 (187)
T COG2242          30 LRPRPGDRLWDIG--AGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD   84 (187)
T ss_pred             hCCCCCCEEEEeC--CCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence            4789999887777  35677888999443 35999999998887665    457754

>PRK08328 hypothetical protein; Provisional

Probab=82.91  E-value=2.3  Score=35.77  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      .+.+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus        26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            346799999 79999999999999998 67777654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=82.89  E-value=5.9  Score=33.59  Aligned_cols=50  Identities=26%  Similarity=0.405  Sum_probs=40.4

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHh
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~  251 (256)
                      +......++|++||=.+  +|+|-.+..+++..| ++|+++|.+++-++.+++
T Consensus        43 ~i~~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~   93 (238)
T COG2226          43 LISLLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVARE   93 (238)
T ss_pred             HHHhhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence            33445667899998775  889999999999997 489999999988777653

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=82.77  E-value=2.6  Score=30.37  Aligned_cols=24  Identities=50%  Similarity=0.797  Sum_probs=19.5

Q ss_pred             cEEEEEEeCCCCC---------ccCCCCEEEEe
Q 036416          133 AVGEVVAVGPGLT---------GRTVGDIIAYA  156 (256)
Q Consensus       133 ~~G~V~~vG~~v~---------~~~~Gd~V~~~  156 (256)
                      ..|+|+++|++..         .+++||+|...
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~   68 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG   68 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence            4799999999653         38999999864

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=82.75  E-value=5.2  Score=34.27  Aligned_cols=48  Identities=21%  Similarity=0.140  Sum_probs=38.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...+++++.+||=+| +| .|..+..+++..+++|++++.+++-.+.+++
T Consensus        46 ~~l~l~~~~~VLDiG-cG-~G~~a~~la~~~~~~v~giD~s~~~~~~a~~   93 (263)
T PTZ00098         46 SDIELNENSKVLDIG-SG-LGGGCKYINEKYGAHVHGVDICEKMVNIAKL   93 (263)
T ss_pred             HhCCCCCCCEEEEEc-CC-CChhhHHHHhhcCCEEEEEECCHHHHHHHHH
Confidence            445789999999998 34 5667778888778999999999887777765

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=82.71  E-value=3.7  Score=39.03  Aligned_cols=41  Identities=24%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCCCEEEEecCCChHHHH-HHHHHHHcCC-eEEEEeCChhhHHH
Q 036416          207 EPGHTVLIQAAAGGVGSL-LCQWANALGA-TVIGTVSTKEKAAQ  248 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~-ai~la~~~ga-~Vi~~~~~~~~~~~  248 (256)
                      -.|++|||.||.|++|.- +-|+++. +. +++..++++.+...
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~E~~~~~  290 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRDEYKLYL  290 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCchHHHHH
Confidence            468999999999999975 5566665 55 78888888776543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.53  E-value=3.9  Score=37.65  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=38.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      ...+++|.| .|.+|..+++.+...|.+|++++.++++.+.+++.
T Consensus       230 ~~~~iiIiG-~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        230 PVKRVMIVG-GGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence            468899999 59999999999999999999999999888777653

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=82.47  E-value=2.6  Score=38.26  Aligned_cols=35  Identities=29%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|.+|.|+| .|.+|..+++.++..|++|++.+..
T Consensus       114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCc
Confidence            3789999999 7999999999999999999999853

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=82.45  E-value=2.7  Score=28.04  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=24.6

Q ss_pred             EecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          214 IQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       214 I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      |+| +|..|++++..++..|.+|.+.+..+
T Consensus         1 IiG-aG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIG-AGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES--SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEe-eCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            678 59999999999998999999998764

...

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=82.41  E-value=2.6  Score=34.67  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      ...+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus        20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            457799999 79999999999999998 78888865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=82.40  E-value=4  Score=36.36  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-hHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~-~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|.+.++-++..|.+|++..+... ..+.+++.|+
T Consensus        16 ~gktIgIIG-~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~   62 (330)
T PRK05479         16 KGKKVAIIG-YGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF   62 (330)
T ss_pred             CCCEEEEEe-eHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC
Confidence            578899999 799999999999999999888766533 3455566665

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.20  E-value=7.6  Score=34.06  Aligned_cols=55  Identities=24%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CCh
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV-STK  243 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~-~~~  243 (256)
                      +|++..+.+..|....---.|.+|+|+|-++.+|.-++.++...|+.|++.. ++.
T Consensus       138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            4666666666665542224799999999899999999999999999999985 443

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=82.17  E-value=3.5  Score=35.06  Aligned_cols=32  Identities=38%  Similarity=0.533  Sum_probs=29.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGT  239 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~  239 (256)
                      -.|.+|+|.| .|.+|..+++.+...|++|+++
T Consensus        30 l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv~v   61 (244)
T PF00208_consen   30 LEGKRVAIQG-FGNVGSHAARFLAELGAKVVAV   61 (244)
T ss_dssp             STTCEEEEEE-SSHHHHHHHHHHHHTTEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE
Confidence            3689999999 6999999999999999998888

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.05  E-value=6.2  Score=34.40  Aligned_cols=54  Identities=17%  Similarity=0.063  Sum_probs=40.9

Q ss_pred             hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +|++..+....|... ++ -.|.+|+|.|.+.-+|.-+..++...|++|+...+..
T Consensus       138 ~PcTp~aii~lL~~~-~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t  192 (285)
T PRK14189        138 RPCTPYGVMKMLESI-GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT  192 (285)
T ss_pred             cCCCHHHHHHHHHHc-CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC
Confidence            455655555555544 33 4799999999877779999999999999998876543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=82.05  E-value=4.4  Score=37.60  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ...|++|+|+| .|.+|+-++..+..+|++|+.+.+.
T Consensus       269 ~~~gk~VvVIG-gG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       269 VYAGKSVVVIG-GGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             ccCCCeEEEEC-CCHHHHHHHHHHHHcCCEEEEEeec
Confidence            35789999999 5999999999999999998888764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=81.86  E-value=2.8  Score=35.55  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=28.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      +.+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46799999 69999999999999998 67777654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=81.44  E-value=6.4  Score=35.62  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +|...+|..|++++..|+.+|.+.+++..   +..|.+.++.+||+
T Consensus        51 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~   96 (380)
T TIGR01127        51 VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAE   96 (380)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCE
Confidence            44445799999999999999997666554   35788999999985

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=81.24  E-value=5.6  Score=33.91  Aligned_cols=47  Identities=30%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~  250 (256)
                      ..++++||++|+=.|  .|.|.++..+++..|-  +|+..+..+++.+.++
T Consensus        34 ~~l~i~pG~~VlEaG--tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~   82 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAG--TGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR   82 (247)
T ss_dssp             HHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred             HHcCCCCCCEEEEec--CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH
Confidence            446899999998887  6678899999998874  8999999998887664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=81.06  E-value=5  Score=36.51  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|.+|.|+| .|.+|..+++.++..|.+|++.+..
T Consensus       114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~~Dp~  148 (381)
T PRK00257        114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLVCDPP  148 (381)
T ss_pred             cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCc
Confidence            3689999999 7999999999999999999999864

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=81.05  E-value=3.7  Score=36.43  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=30.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWAN-ALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~-~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++ ..|++|+..++.
T Consensus       144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~~~~~~  178 (323)
T PRK15409        144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPILYNARR  178 (323)
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEEEECCC
Confidence            578999999 7999999999998 899999988865

>PRK06721 threonine synthase; Reviewed

Probab=80.80  E-value=6  Score=35.50  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=36.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~  255 (256)
                      |...+|...+|..|.+++..|+..|.+++++..    ++.|.+.++.+||+
T Consensus        74 g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~  124 (352)
T PRK06721         74 GSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAE  124 (352)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCE
Confidence            334455555899999999999999998666664    24688889999985

>PRK12831 putative oxidoreductase; Provisional

Probab=80.71  E-value=3.1  Score=38.78  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ...+..|+|+| +|+.|+.++..++..|.+|++++..
T Consensus       137 ~~~~~~V~IIG-~GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        137 EKKGKKVAVIG-SGPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCCCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEecC
Confidence            35688999999 5999999999999999999888753

>PRK02991 D-serine dehydratase; Provisional

Probab=80.67  E-value=12  Score=34.80  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      .+|...+|..|++++..|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus       159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAe  205 (441)
T PRK02991        159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVT  205 (441)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence            456666899999999999999997665554   47789999999985

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=80.60  E-value=6.5  Score=31.94  Aligned_cols=44  Identities=25%  Similarity=0.058  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~  250 (256)
                      .++++++||-.|  .|.|..++.+++.. +++|++++.+++..+.++
T Consensus        42 ~l~~g~~VLDiG--cGtG~~al~la~~~~~~~V~giD~s~~~l~~A~   86 (187)
T PRK00107         42 YLPGGERVLDVG--SGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR   86 (187)
T ss_pred             hcCCCCeEEEEc--CCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence            355689999998  45677777777654 679999999988776664

>TIGR00477 tehB tellurite resistance protein TehB

Probab=80.46  E-value=4.8  Score=32.76  Aligned_cols=45  Identities=16%  Similarity=-0.034  Sum_probs=34.0

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .....++.+||-.|  .|.|..+..+++ .|.+|+++|.+++-.+.++
T Consensus        25 ~~~~~~~~~vLDiG--cG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~   69 (195)
T TIGR00477        25 AVKTVAPCKTLDLG--CGQGRNSLYLSL-AGYDVRAWDHNPASIASVL   69 (195)
T ss_pred             HhccCCCCcEEEeC--CCCCHHHHHHHH-CCCeEEEEECCHHHHHHHH
Confidence            33455567899988  577888888887 5889999999987665543

Part of a tellurite-reducing operon tehA and tehB

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=80.19  E-value=7.4  Score=34.38  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +|...+|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~  115 (317)
T TIGR02991        70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAE  115 (317)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCE
Confidence            44555899999999999999998666654   35688899999985

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=80.14  E-value=3.9  Score=38.90  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      -.|+|.| +|++|++++..+...|.+|.+++..+
T Consensus        24 ~dVlIVG-aGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVG-AGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCEEEEC-CCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3599999 59999999888888999999988654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.09  E-value=4.4  Score=38.52  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       137 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~  170 (525)
T TIGR01327       137 YGKTLGVIG-LGRIGSIVAKRAKAFGMKVLAYDPY  170 (525)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCC
Confidence            578999999 7999999999999999999999974

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		4e-40
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		1e-37
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		1e-32
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		2e-16
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		5e-15
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		5e-15
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		5e-15
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		3e-14
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		3e-14
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		6e-11
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		1e-08
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		8e-08
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		9e-08
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		5e-07
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		6e-07
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-06
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		2e-05
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		2e-05
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		3e-05
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		3e-05
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		3e-05
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		4e-05
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		1e-04
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		2e-04
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		2e-04
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		5e-04
1iz0_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		7e-04

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 108/182 (59%)
Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M K I+    G PEVL++ D E   PG   + VRNKAIGLNFID YYR G+Y    +P  
Sbjct: 1   MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSG 60
Query: 129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                          +T   VGD +AY  G +G+Y+E  +LP               AA+
Sbjct: 61  LGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAA 120
Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +MLKG+T Q+LLR+ ++V+PG  +L  AAAGGVGSL CQWA ALGA +IGTVS+ EKAA 
Sbjct: 121 LMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAH 180
Query: 249 AK 250
           AK
Sbjct: 181 AK 182

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 114/193 (59%), Gaps = 5/193 (2%)
Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKM 125
           MV A  +++ G P+   WE+V++G PG G++R+RN AIG+NF+D Y+R G+  P    + 
Sbjct: 1   MVMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60
Query: 126 PFTXXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXX 185
           P                 +T  TVG+ +      +G+Y++E++ PA K            
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDD 120
Query: 186 A--ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243
              A +MLKGMTAQ+LL +  KV+PG  VLI AAAGG+G ++  WA  LGATVIGTVST+
Sbjct: 121 VHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180
Query: 244 EKAAQAKDDGCHH 256
           EKA  A+  GCHH
Sbjct: 181 EKAETARKLGCHH 193

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 99/186 (53%)
Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M   I  ++HG PEVL+  +    +P E EI+V NKAIG+NFID Y R G+Y P  +P  
Sbjct: 1   MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG 60
Query: 129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAAS 188
                          +     GD + YA  A+G+Y+    + A+K            AA+
Sbjct: 61  LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA 120
Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV T +KA  
Sbjct: 121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 180
Query: 249 AKDDGC 254
           A   G 
Sbjct: 181 ALKAGA 186

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 7/190 (3%)
Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXX 130
           K I + E G  +V+K+ED  +    E E+ ++NK  G+N+I+ Y+RKG+Y P + P+   
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY-PCEKPYVLG 68
Query: 131 XXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQIL----PANKXXXXXXXXXXXXA 186
                        +T   VGD +AY   +  ++A+   +    P  K             
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVAYISNS--TFAQYSKISSQGPVMKLPKGTSDEELKLY 126
Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246
           A+ +L+ +TA       + V+ G  VL+ AAAGGVG +L Q     GA  I   ST EK 
Sbjct: 127 AAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL 186
Query: 247 AQAKDDGCHH 256
             AK+ G  +
Sbjct: 187 KIAKEYGAEY 196

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTXXXXXXXXXXXXXXXLTG 146
           D  +  PG+G++ VRN+ +G+N  D+ Y  G Y P+ K PF                 + 
Sbjct: 24  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 83
Query: 147 R-TVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFK 205
           R TVG  +AY   A GS+AE  ++PA+               ++++ G TA   L+    
Sbjct: 84  RYTVGQAVAYM--APGSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKELGG 139
Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +  G  VL+ AAAGG G    Q +      VIGT S+ EK+A  K  GC  
Sbjct: 140 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR 190

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTXXXXXXXXXXXXXXXLTG 146
           D  +  PG+G++ VRN+ +G+N  D+ Y  G Y P+ K PF                 + 
Sbjct: 45  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 104
Query: 147 R-TVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFK 205
           R TVG  +AY   A GS+AE  ++PA+               ++++ G TA   L+    
Sbjct: 105 RYTVGQAVAYM--APGSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKELGG 160
Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +  G  VL+ AAAGG G    Q +      VIGT S+ EK+A  K  GC  
Sbjct: 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR 211

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 88  DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTXXXXXXXXXXXXXXXLTG 146
           D  +  PG+G++ VRN+ +G+N  D+ Y  G Y P+ K PF                 + 
Sbjct: 53  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 112
Query: 147 R-TVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFK 205
           R TVG  +AY   A GS+AE  ++PA+               ++++ G TA   L+    
Sbjct: 113 RYTVGQAVAYM--APGSFAEYTVVPAS--IATPVPSVKPEYLTLLVSGTTAYISLKELGG 168
Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +  G  VL+ AAAGG G    Q +      VIGT S+ EK+A  K  GC  
Sbjct: 169 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR 219

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 69  MVKAIRVYEHGDPEVLKW-EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--KPAKM 125
           +++A+RV+E G PEVLK   D+ +  P + ++ ++  A G+N ++ Y R G Y  KP  +
Sbjct: 29  LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPL-L 87
Query: 126 PFTXXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXX 185
           P+T                +    GD +  +    G YAE  +   +             
Sbjct: 88  PYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQ 147
Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
            A+I +   TA   L     V+ G +VL+  A+GGVG   CQ A A G  ++GT  T+E 
Sbjct: 148 GAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG 207
Query: 246 AAQAKDDGCH 255
                 +G H
Sbjct: 208 QKIVLQNGAH 217

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFT 128
           ++A+ +   G PEVL+  D+ + EPG  E+RVR KA  LN +DV+ RKGV  P   +P  
Sbjct: 1   MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60
Query: 129 XXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAM--------------------------GS 162
                          + G   GD +    G                            G+
Sbjct: 61  LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120
Query: 163 YAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG 222
           YAE  +LP               AA+I L  +TA  ++     V PG  VL+ AA  GV 
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180
Query: 223 SLLCQWANALGATVIGTVSTKEKAAQAK 250
               Q A   GA VI T  +++K  +AK
Sbjct: 181 VAAIQIAKLFGARVIATAGSEDKLRRAK 208

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 93  EPGEGEIRVRNKAIGLNFIDVYYRKG-VYKPAKMPFTXXXXXXXXXXXXXXXLTGRTVGD 151
           EP +GE+++R KA GLNFID+  R+G +  P K P                 + G  +GD
Sbjct: 27  EPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGD 86
Query: 152 -IIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFKVEPGH 210
            ++A+      ++AE    P               AA+  +  +TA  +L     +  G 
Sbjct: 87  RVMAFVN--YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGM 144
Query: 211 TVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCH 255
           +VL+ +A GGVG  + Q  + +   TV GT ST +  A  KD   H
Sbjct: 145 SVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEA-IKDSVTH 189

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 76  YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXX 135
           ++  D  + K  +++I EP   EI V+ ++I +N +D   R  +   +K P         
Sbjct: 12  FKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQR--LMDVSKAPRVLGFDAIG 69
Query: 136 XXXXXXXXLTGRTVGDIIAYAGGA--MGSYAEEQILPANKXXXXXXXXXXXXAASIMLKG 193
                   +T    GDI+ Y+G     GS AE Q++                A S+ L G
Sbjct: 70  VVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTG 129
Query: 194 MTAQFLLRRCFKV------EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +TA   L   F +        G T+LI   AGGVGS+  Q A A G  VI T S  E   
Sbjct: 130 ITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIE 189
Query: 248 QAKDDGC 254
             K  G 
Sbjct: 190 WTKKMGA 196

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 39/215 (18%)
Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP------- 122
           ++A+R+ E G P  LK ED+ I +P   ++ ++ +A G+   DV+ R+G +         
Sbjct: 1   MRAMRLVEIGKP--LKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDL 58
Query: 123 -AKMPFTXXXXXXXXXXXXXXXLTGRTVGDIIA---YAGGAM------------------ 160
             K+P T               + G + GD++A   + G                     
Sbjct: 59  GVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWL 118
Query: 161 -----GSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ 215
                G+YAE  ++P  K            AA +   G+T    +R+   ++P  T+++ 
Sbjct: 119 GINYDGAYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKA-SLDPSKTLVVI 177
Query: 216 AAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQA 249
            A GG+G++  Q A A+ GAT+IG V  +E+A +A
Sbjct: 178 GAGGGLGTMAIQIAKAVSGATIIG-VDVREEALEA 211

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Query: 95  GEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFTXXXXXXXXXXXXXXXLTGRTVGD-I 152
           GEGE+ VR +AIG+N  D+  R+G Y P K                    ++G  VGD +
Sbjct: 54  GEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKV 113
Query: 153 IAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFKVEPGHTV 212
              A G  G+YAE  +LPA +            AA++     T    L +   +  G +V
Sbjct: 114 CGLANG--GAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQXAGLTEGESV 171
Query: 213 LIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           LI     G+G+   Q A A GA V  T  +  K
Sbjct: 172 LIHGGTSGIGTTAIQLARAFGAEVYATAGSTGK 204

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 2/184 (1%)
Query: 70  VKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPF 127
           V+A+    HGDP +V++ +++E+      ++RV+  A  +N  D+   +G Y    ++P 
Sbjct: 27  VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPA 86
Query: 128 TXXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAA 187
                           +TG   GD +  A   +G++  E +                 AA
Sbjct: 87  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 146
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ +   TA  +L    +++PG +V+  A+  GVG  + Q A ALG   I  V  +    
Sbjct: 147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQ 206
Query: 248 QAKD 251
           +  D
Sbjct: 207 KLSD 210

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 2/184 (1%)
Query: 70  VKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPF 127
           V+A+    HGDP +V++ +++E+      ++RV+  A  +N  D+   +G Y    ++P 
Sbjct: 14  VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPA 73
Query: 128 TXXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAA 187
                           +TG   GD +  A   +G++  E +                 AA
Sbjct: 74  VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 133
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ +   TA  +L    +++PG +V+  A+  GVG  + Q A ALG   I  V  +    
Sbjct: 134 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQ 193
Query: 248 QAKD 251
           +  D
Sbjct: 194 KLSD 197

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 72/184 (39%), Gaps = 9/184 (4%)
Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-----M 125
           KAI+  + G P+VLK  D    E  + +  ++  A  LN ID   R G    AK     +
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 126 PFTXXXXXXXXXXXXXXXLTGRTVGDIIAYAGGAMG---SYAEEQILPANKXXXXXXXXX 182
           P                 +    +GD +    G       YAE      +          
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKVXGIAGFPDHPCCYAEYVCASPDTIIQKLEKLS 127
Query: 183 XXXAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242
              AAS+   G+TA   L +  +V+ G  VLI A AGGVG L  Q A   G TVI T S 
Sbjct: 128 FLQAASLPTAGLTALQALNQA-EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK 186
Query: 243 KEKA 246
           +  A
Sbjct: 187 RNHA 190

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +I + G+TA F L     V+ G TVL+ AAAG VGS++ Q A   G  V+G   + EK A
Sbjct: 125 TIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA 184
Query: 248 QAKDDG 253
             K  G
Sbjct: 185 YLKQIG 190

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 95  GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXXXXXXXXXXLTGRTVGDII- 153
           G+GE+R+  +A G+NF D     G+Y       +               +TG   GD + 
Sbjct: 237 GDGEVRIAMRAAGVNFRDALIALGMYPGVA---SLGSEGAGVVVETGPGVTGLAPGDRVM 293
Query: 154 -----AYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCFKVEP 208
                A+   A+  +     +PA              AAS+ +  +TA + L     + P
Sbjct: 294 GMIPKAFGPLAVADHRMVTRIPAG--------WSFARAASVPIVFLTAYYALVDLAGLRP 345
Query: 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241
           G ++L+ +AAGGVG    Q A  LGA V  T S
Sbjct: 346 GESLLVHSAAGGVGMAAIQLARHLGAEVYATAS 378

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 87  EDVEIGEPG--EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXXXXXXXXXXL 144
           E V++ EP   EGE+ +R +A+GLNF D   R G Y       T               +
Sbjct: 14  ELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAY------LTRLHPPFIPGMEVVGVV 67
Query: 145 TGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCF 204
            GR    ++       G  AE   +P               AA+  +  +TA   L+R  
Sbjct: 68  EGRRYAALVP-----QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRA- 121
Query: 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +  PG  VL+QAAAG +G+   Q A A+G  V+   S  EK A
Sbjct: 122 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 164

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ + G+TA F L     V+ G TV++ AAAG VGS++ Q A   G  V+G V + EK A
Sbjct: 141 TVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVA 200

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 87  EDVEIGEPG--EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXXXXXXXXXXL 144
           E V++ EP   EGE+ +R +A+GLNF D   R G Y       T               +
Sbjct: 14  ELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAY------LTRLHPPFIPGMEVVGVV 67
Query: 145 TGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCF 204
            GR    ++       G  AE   +P               AA+  +  +TA   L+R  
Sbjct: 68  EGRRYAALVP-----QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRA- 121
Query: 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +  PG  VL+QAAAG +G+   Q A A+G  V+   S  EK A
Sbjct: 122 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 164

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++ + G+TA F L     V+ G TV++ AAAG VGS++ Q A   G  V+G V + EK A
Sbjct: 120 TVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVA 179

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246
           + GMTA          + G TV + AA+G VG L+ Q+A  LG  V+G+  +KEK 
Sbjct: 136 MPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKV 191

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 7/187 (3%)
Query: 72  AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXX 131
           A+   + G PE L  ++V    PGEGE+ ++  A  LN  D+  R+G Y P   P     
Sbjct: 25  AVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPP--PGASNI 82
Query: 132 XXXXXXXXXXXXLTG----RTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAA 187
                         G      +GD  A A    G  A+   +P               AA
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGD-TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAA 141
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +I    +TA  LL     V+ G  VLI A   GVG+   Q     GA  + T  +++K  
Sbjct: 142 AIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQ 201
Query: 248 QAKDDGC 254
            A+  G 
Sbjct: 202 MAEKLGA 208

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 7/187 (3%)
Query: 72  AIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXX 131
           A+   + G PE L  ++V    PGEGE+ ++  A  LN  D+  R+G Y P   P     
Sbjct: 9   AVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPP--PGASNI 66
Query: 132 XXXXXXXXXXXXLTG----RTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAA 187
                         G      +GD  A A    G  A+   +P               AA
Sbjct: 67  LGLEASGHVAELGPGCQGHWKIGD-TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAA 125
Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +I    +TA  LL     V+ G  VLI A   GVG+   Q     GA  + T  +++K  
Sbjct: 126 AIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQ 185
Query: 248 QAKDDGC 254
            A+  G 
Sbjct: 186 MAEKLGA 192

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Query: 81  PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID-VYYRKGVYKPAKMPFTXXXXXXXXXXX 139
           P  LK  +  + E GE +I VR  A+ LN+ D +    G       PF            
Sbjct: 38  PHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASDXSGVVEA 97
Query: 140 XXXXLTGRTVGD--IIAYAGGAM---------------------GSYAEEQILPANKXXX 176
               +T    GD  I  +A G +                     G  +E  +LP      
Sbjct: 98  VGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVA 157
Query: 177 XXXXXXXXXAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV 236
                    A+++   G+TA F L     +  G  V++Q   GGV     Q A A GA V
Sbjct: 158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGT-GGVALFGLQIAKATGAEV 216
Query: 237 IGTVSTKEKAAQAKDDGCHH 256
           I T S++EK  +A   G  H
Sbjct: 217 IVTSSSREKLDRAFALGADH 236

>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 87  EDVEIGEPG--EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTXXXXXXXXXXXXXXXL 144
           E V++ EP   EGE+ +R +A+GLNF D   R G Y       T               +
Sbjct: 14  ELVDLPEPEAEEGEVVLRVEAVGLNFADHLXRLGAY------LTRLHPPFIPGXEVVGVV 67
Query: 145 TGRTVGDIIAYAGGAMGSYAEEQILPANKXXXXXXXXXXXXAASIMLKGMTAQFLLRRCF 204
            GR    ++       G  AE   +P               AA+  +  +TA   L+R  
Sbjct: 68  EGRRYAALVP-----QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRA- 121
Query: 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           +  PG  VL+QAAAG +G+   Q A A G  V+   S  EK A
Sbjct: 122 QARPGEKVLVQAAAGALGTAAVQVARAXGLRVLAAASRPEKLA 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-108
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-107
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-104
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-100
3gms_A	340	Putative NADPH:quinone reductase; structural genom	9e-90
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-87
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	4e-72
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-69
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	7e-69
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-68
4eye_A	342	Probable oxidoreductase; structural genomics, niai	3e-66
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	7e-62
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-55
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-54
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-54
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-53
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-52
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	5e-51
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	6e-51
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-50
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	1e-48
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-48
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-47
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	4e-46
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-44
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	8e-42
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-39
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-35
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	5e-34
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	4e-33
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-31
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	8e-31
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-29
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	5e-29
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-27
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-23
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	8e-23
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-22
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	2e-19
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-17
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-17
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	5e-17
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	7e-17
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-16
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	1e-16
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	2e-16
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	3e-16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-16
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	8e-16
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-15
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	4e-15
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	5e-15
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	7e-15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	9e-15
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	6e-14
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	6e-14
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-13
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-13
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-13
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	5e-13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	6e-13
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	3e-12
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-12
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-11
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-11

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  314 bits (808), Expect = e-108
 Identities = 95/188 (50%), Positives = 121/188 (64%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M K I+    G PEVL++ D E   PG   + VRNKAIGLNFID YYR G+Y    +P  
Sbjct: 1   MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G E  G V AVG  +T   VGD +AY  G +G+Y+E  +LP   +V +  S+    AA+
Sbjct: 61  LGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
           +MLKG+T Q+LLR+ ++V+PG  +L  AAAGGVGSL CQWA ALGA +IGTVS+ EKAA 
Sbjct: 121 LMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAH 180

Query: 249 AKDDGCHH 256
           AK  G   
Sbjct: 181 AKALGAWE 188

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  311 bits (798), Expect = e-107
 Identities = 82/188 (43%), Positives = 112/188 (59%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFT 128
           M   I  ++HG PEVL+  +    +P E EI+V NKAIG+NFID Y R G+Y P  +P  
Sbjct: 1   MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG 60

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
            G EA G V  VG G+     GD + YA  A+G+Y+    + A+K   +P++I    AA+
Sbjct: 61  LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAA 120

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV T +KA  
Sbjct: 121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 180

Query: 249 AKDDGCHH 256
           A   G   
Sbjct: 181 ALKAGAWQ 188

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  304 bits (780), Expect = e-104
 Identities = 91/193 (47%), Positives = 127/193 (65%), Gaps = 5/193 (2%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKM 125
           MV A  +++ G P+   WE+V++G PG G++R+RN AIG+NF+D Y+R G+       + 
Sbjct: 1   MVMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60

Query: 126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI 185
           P   G EA   V  VGPG+T  TVG+ +      +G+Y++E++ PA K++ VP  +D   
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDD 120

Query: 186 A--ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243
              A +MLKGMTAQ+LL +  KV+PG  VLI AAAGG+G ++  WA  LGATVIGTVST+
Sbjct: 121 VHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180

Query: 244 EKAAQAKDDGCHH 256
           EKA  A+  GCHH
Sbjct: 181 EKAETARKLGCHH 193

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  293 bits (753), Expect = e-100
 Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 7/194 (3%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
               K I + E G  +V+K+ED  +    E E+ ++NK  G+N+I+ Y+RKG+Y P + P
Sbjct: 6   PEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY-PCEKP 64

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEE-QILPANKVVPVPSSID--- 182
           +  G EA G VVA G G+T   VGD +AY      ++A+  +I     V+ +P       
Sbjct: 65  YVLGREASGTVVAKGKGVTNFEVGDQVAYISN--STFAQYSKISSQGPVMKLPKGTSDEE 122

Query: 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242
             + A+ +L+ +TA       + V+ G  VL+ AAAGGVG +L Q     GA  I   ST
Sbjct: 123 LKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAST 182

Query: 243 KEKAAQAKDDGCHH 256
            EK   AK+ G  +
Sbjct: 183 DEKLKIAKEYGAEY 196

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  268 bits (687), Expect = 9e-90
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 67  TNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAK 124
           +   K I+ ++ G+P +VL+ E   I    + E+ VR     +N  D+    G Y     
Sbjct: 2   SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIP 61

Query: 125 MPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPV 184
           +P  PG E VG V  VG  ++   +G  +    G  G++ E     A+ VVP+P SID  
Sbjct: 62  LPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRGE-GTWQEYVKTSADFVVPIPDSIDDF 120

Query: 185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244
            AA + +  +TA         ++    +L+ A    +G L  Q +  L   +I      +
Sbjct: 121 TAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK 180

Query: 245 KAAQAKDDGCHH 256
              +    G  +
Sbjct: 181 HTEELLRLGAAY 192

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  262 bits (672), Expect = 2e-87
 Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 2/194 (1%)

Query: 65  TRTNMVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KP 122
           T   +++A+RV+E G PEVLK   D+ +  P + ++ ++  A G+N ++ Y R G Y + 
Sbjct: 25  TGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRK 84

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSID 182
             +P+TPG +  G + AVG   +    GD +  +    G YAE  +   + V  +P  +D
Sbjct: 85  PLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLD 144

Query: 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242
               A+I +   TA   L     V+ G +VL+  A+GGVG   CQ A A G  ++GT  T
Sbjct: 145 FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 204

Query: 243 KEKAAQAKDDGCHH 256
           +E       +G H 
Sbjct: 205 EEGQKIVLQNGAHE 218

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  223 bits (571), Expect = 4e-72
 Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 9/215 (4%)

Query: 47  LKHKQSKALATKAAAETRTRTNMVKAIRVYE---HGDPEVLKWEDVEIGEPGEGEIRVRN 103
           + H    +       E     +M++ + V     +    V    D  +  PG+G++ VRN
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRN 60

Query: 104 KAIGLNFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGR-TVGDIIAYAGGAMG 161
           + +G+N  D+ Y  G Y    K PF  G E +GEVVA+G   + R TVG  +AY     G
Sbjct: 61  RFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAP--G 118

Query: 162 SYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
           S+AE  ++PA+   PVPS        ++++ G TA   L+    +  G  VL+ AAAGG 
Sbjct: 119 SFAEYTVVPASIATPVPSVKPE--YLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGT 176

Query: 222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           G    Q +      VIGT S+ EK+A  K  GC  
Sbjct: 177 GQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR 211

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  217 bits (554), Expect = 1e-69
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 9/216 (4%)

Query: 48  KHKQSKALATKAAAETRTRTNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAI 106
            H     L T+          + +A+    HGDP +V++ +++E+      ++RV+  A 
Sbjct: 6   HHSSGVDLGTENLYFQSMPARV-RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAA 64

Query: 107 GLNFIDVYYRKGVY--KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYA 164
            +N  D+   +G Y   P ++P   G E V +VVAVG  +TG   GD +  A   +G++ 
Sbjct: 65  PINPSDINMIQGNYGLLP-ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWR 123

Query: 165 EEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224
            E +     ++ VPS I    AA++ +   TA  +L    +++PG +V+  A+  GVG  
Sbjct: 124 TEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQA 183

Query: 225 LCQWANALGATVIGTVSTKEK----AAQAKDDGCHH 256
           + Q A ALG   I  V  +      + + K  G  H
Sbjct: 184 VIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEH 219

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  215 bits (549), Expect = 7e-69
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 17/202 (8%)

Query: 71  KAIRVYEHGDPE------------VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG 118
           KA+ +   G  +             L+   + +  PG  ++ ++     +N  DV + KG
Sbjct: 12  KALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKG 71

Query: 119 VY-KPAKMPFTPGMEAVGEVVAVGPGLTGR-TVGDIIAYAGG--AMGSYAEEQILPANKV 174
            Y +P       G E VG +VA G     +  VG  +A+A G    GS+AE  +  A   
Sbjct: 72  QYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAAC 131

Query: 175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
           +P+  ++     A++++  +TA  +     K E     ++ A A  +  L+   A   G 
Sbjct: 132 IPLLDTVRDEDGAAMIVNPLTAIAMFDI-VKQEGEKAFVMTAGASQLCKLIIGLAKEEGF 190

Query: 235 TVIGTVSTKEKAAQAKDDGCHH 256
             I TV   E+ A  KD G  H
Sbjct: 191 RPIVTVRRDEQIALLKDIGAAH 212

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  214 bits (546), Expect = 3e-68
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 34/220 (15%)

Query: 69  MVKAIRV---YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---- 121
           M  A+++    +      L  + ++   PG  E+ +R +A  LN  D+    G       
Sbjct: 2   MHSALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTA 61

Query: 122 -------------------------PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYA 156
                                            G E  G VV  G     + +      A
Sbjct: 62  KASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAA 121

Query: 157 GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA 216
            G    Y++ + +PA++ + +P    P   AS  +  +TA  ++    ++E    ++  A
Sbjct: 122 IG-GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVET-MRLEGHSALVHTA 179

Query: 217 AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           AA  +G +L Q     G  ++  V  +E+A   K  G  H
Sbjct: 180 AASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVH 219

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  208 bits (531), Expect = 3e-66
 Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 59  AAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG 118
             A+T+   +M KAI+      PE L + DVE    G   + V  KA G+ F D    KG
Sbjct: 12  LEAQTQGPGSM-KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKG 70

Query: 119 VYK-PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPV 177
            Y+   + PF PG+E  G V +   G +G   GD +  A   +G YAE   +  + ++P 
Sbjct: 71  EYQLKMEPPFVPGIETAGVVRSAPEG-SGIKPGDRVM-AFNFIGGYAERVAVAPSNILPT 128

Query: 178 PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVI 237
           P  +D   A +++    T  F   R  ++  G TVL+  AAGG+G+   Q A  +GA VI
Sbjct: 129 PPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVI 188

Query: 238 GTVSTKEKAAQAKDDGCHH 256
             V+        K  G   
Sbjct: 189 AVVNRTAATEFVKSVGADI 207

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  197 bits (502), Expect = 7e-62
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTP 129
           +A+ +   G    L+     + EP +GE+++R KA GLNFID+  R+G    P K P  P
Sbjct: 5   RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           G E  G V A+G  + G  +GD ++A+      ++AE    P   V  +P  +    AA+
Sbjct: 65  GFECSGIVEALGDSVKGYEIGDRVMAFVNY--NAWAEVVCTPVEFVYKIPDDMSFSEAAA 122

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             +  +TA  +L     +  G +VL+ +A GGVG  + Q  + +    +   ++  K   
Sbjct: 123 FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEA 182

Query: 249 AKDDGCH 255
            KD   H
Sbjct: 183 IKDSVTH 189

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  181 bits (460), Expect = 2e-55
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 29/217 (13%)

Query: 69  MVKAIRVYEHGDP-EVLKWEDVEIG--EPGEGEIRVRNKAIGLNFIDVYYRKGVY--KP- 122
             +A+   +HG+P +VL  +  EI        E+ V+     +N  D+   +GVY  KP 
Sbjct: 3   TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPA 62

Query: 123 -------AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVV 175
                   +     G E + EV+ VG  ++    GD +  +    G++    +   +  +
Sbjct: 63  KTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFI 122

Query: 176 PV-----------PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ-AAAGGVGS 223
            +           P+ +     A+I +  +TA  +L    K+ PG    IQ      VG 
Sbjct: 123 KLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGK 182

Query: 224 LLCQWANALGATVIGTVSTK----EKAAQAKDDGCHH 256
              Q    L    I  +  +    E  A  K+ G   
Sbjct: 183 YASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ 219

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  178 bits (455), Expect = 1e-54
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 6/213 (2%)

Query: 47  LKHKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAI 106
           + H    +       E     +M  A+   + G PE L  ++V    PGEGE+ ++  A 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSM-LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAAS 59

Query: 107 GLNFIDVYYRKGVYKPAK-MPFTPGMEAVGEVVAVGPGLTGR-TVGD-IIAYAGGAMGSY 163
            LN  D+  R+G Y P        G+EA G V  +GPG  G   +GD  +A   G  G  
Sbjct: 60  ALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPG--GGQ 117

Query: 164 AEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS 223
           A+   +P   ++P+P  +    AA+I    +TA  LL     V+ G  VLI A   GVG+
Sbjct: 118 AQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGT 177

Query: 224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
              Q     GA  + T  +++K   A+  G   
Sbjct: 178 AAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAA 210

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  177 bits (450), Expect = 3e-54
 Identities = 72/213 (33%), Positives = 101/213 (47%), Gaps = 27/213 (12%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA-KMPFTP 129
           +A+ +   G PEVL+  D+ + EPG  E+RVR KA  LN +DV+ RKGV  P   +P   
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAM-------------------------GSY 163
           G +  G V AVGPG+ G   GD ++   G +                          G+Y
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTY 121

Query: 164 AEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS 223
           AE  +LP   + P P ++    AA+I L  +TA  ++     V PG  VL+ AA  GV  
Sbjct: 122 AEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSV 181

Query: 224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
              Q A   GA VI T  +++K  +AK  G   
Sbjct: 182 AAIQIAKLFGARVIATAGSEDKLRRAKALGADE 214

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  175 bits (447), Expect = 1e-53
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 4/197 (2%)

Query: 62  ETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK 121
           ++ +    ++ + +   G P+V+      +   GEGE+ VR +AIG+N  D+  R+G Y 
Sbjct: 21  QSMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYP 80

Query: 122 PAK-MPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPS 179
           P K      G+E  GE+V VGPG++G  VGD +   A G  G+YAE  +LPA +++P P 
Sbjct: 81  PPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLANG--GAYAEYCLLPAGQILPFPK 138

Query: 180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239
             D V AA++     T    L +   +  G +VLI     G+G+   Q A A GA V  T
Sbjct: 139 GYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYAT 198

Query: 240 VSTKEKAAQAKDDGCHH 256
             +  K    +  G   
Sbjct: 199 AGSTGKCEACERLGAKR 215

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  172 bits (439), Expect = 1e-52
 Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 10/189 (5%)

Query: 63  TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK- 121
           +     M KAI+  + G P+VLK  D    E  + ++ ++  A  LN ID   R G    
Sbjct: 1   SNAMKEM-KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFV 59

Query: 122 ----PAKMPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG--GAMGSYAEEQILPANKV 174
                  +P   G +  GEV+ +G  +    +GD ++  AG       YAE      + +
Sbjct: 60  AKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTI 119

Query: 175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
           +     +  + AAS+   G+TA   L +  +V+ G  VLI A AGGVG L  Q A   G 
Sbjct: 120 IQKLEKLSFLQAASLPTAGLTALQALNQA-EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT 178

Query: 235 TVIGTVSTK 243
           TVI T S +
Sbjct: 179 TVITTASKR 187

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  168 bits (427), Expect = 5e-51
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 71  KAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           +  +V+ +      +    V+I      +I V+N+AIG+N +D  + K           P
Sbjct: 3   EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGA--MGSYAEEQILPANKVVPVPSSIDPVIAA 187
           G++  G +V VG  +  + +G  +AY       GS+AE  +L  ++V+ +P ++    AA
Sbjct: 63  GVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAA 122

Query: 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           ++    +TA     +   +     VLI    G V +LL Q  N  G  V    ++    A
Sbjct: 123 ALPCPLLTAWQAFEKI-PLTKQREVLI-VGFGAVNNLLTQMLNNAGYVVDLVSAS-LSQA 179

Query: 248 QAKDDGCHH 256
            A   G  H
Sbjct: 180 LAAKRGVRH 188

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  168 bits (428), Expect = 6e-51
 Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-- 124
           T  + A  V E   P VL    +   +P  G++ V+ +A G N +D   R G    A+  
Sbjct: 5   TPTMIAAVVEEANGPFVL--RKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQP 62

Query: 125 MPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAYAGG---AMGSYAEEQILPANKVVPVPSS 180
           +P   GM+  G VVAVGP +    VGD +    GG     G++A+   + A  +   P++
Sbjct: 63  LPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAA 122

Query: 181 IDPVIAASIMLKGMTA-QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239
           +    A+ + L  +TA + L+ R  +V+ G TVLIQ   GGVG +  Q A A GA V  T
Sbjct: 123 LTMRQASVLPLVFITAWEGLVDRA-QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT 181

Query: 240 VSTKEKAAQAKDDGCHH 256
                     +D G   
Sbjct: 182 ARG-SDLEYVRDLGATP 197

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  165 bits (421), Expect = 3e-50
 Identities = 64/188 (34%), Positives = 86/188 (45%), Gaps = 18/188 (9%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTP 129
           KA  +   G P  L+  D+   E  EGE+ +R +A+GLNF D   R G Y      PF P
Sbjct: 2   KAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIP 59

Query: 130 GMEAVGEVVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAAS 188
           GME VG V            G    A      G  AE   +P   ++P+P  + P  AA+
Sbjct: 60  GMEVVGVVE-----------GRRYAALVPQ--GGLAERVAVPKGALLPLPEGLSPEEAAA 106

Query: 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248
             +  +TA   L+R  +  PG  VL+QAAAG +G+   Q A A+G  V+   S  EK A 
Sbjct: 107 FPVSFLTAYLALKRA-QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 165

Query: 249 AKDDGCHH 256
               G   
Sbjct: 166 PLALGAEE 173

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  163 bits (414), Expect = 1e-48
 Identities = 63/232 (27%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 49  HKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGL 108
           H     L T+        +  ++     E   P  LK  +  + E GE +I VR  A+ L
Sbjct: 7   HSSGVDLGTENLYFQSMMSKWMQEWST-ETVAPHDLKLAERPVPEAGEHDIIVRTLAVSL 65

Query: 109 NFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD---------------- 151
           N+ D    +         PF P  +  G V AVG  +T    GD                
Sbjct: 66  NYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRP 125

Query: 152 -------IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF 204
                       G   G  +E  +LP    V  P S+D   A+++   G+TA F L    
Sbjct: 126 GTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKG 185

Query: 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
            +  G  V++Q   GGV     Q A A GA VI T S++EK  +A   G  H
Sbjct: 186 HLRAGDRVVVQ-GTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADH 236

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  164 bits (418), Expect = 2e-48
 Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 46/246 (18%)

Query: 57  TKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR 116
            +A    +  T M   +   +    + +  +DV + E G GE  V   A  +N+  V+  
Sbjct: 31  YRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTS 90

Query: 117 KGVYKPA-----------------KMPF-TPGMEAVGEVVAVGPGLTGRTVGD------- 151
                                    +P+   G +  G V+  GPG+     GD       
Sbjct: 91  IFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL 150

Query: 152 -------------------IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLK 192
                               I       G  AE  ++ +N+++P P  +    AA+  L 
Sbjct: 151 SVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLV 210

Query: 193 GMTAQFLL--RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250
             TA   L  R    ++ G  VLI  A+GG+GS   Q+A A GA  I  VS+ +KA   +
Sbjct: 211 NSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR 270

Query: 251 DDGCHH 256
             G   
Sbjct: 271 AMGAEA 276

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  160 bits (407), Expect = 1e-47
 Identities = 61/221 (27%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 47  LKHKQSKALATKAAAETRTRTNMVKAIRVYEHG---DPEVLKWEDVEIGEPGEGEIRVRN 103
           + H    +       E     +M KA+   +     D   L   ++    P   +I V  
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSM-KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEV 59

Query: 104 KAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGA--MG 161
           KA+ +N +D   R+            G +A G V AVGP +T    GD + YAG     G
Sbjct: 60  KAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPG 119

Query: 162 SYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-----GHTVLIQA 216
           + AE  ++    V   P ++D   AA++ L  +TA         V          +LI  
Sbjct: 120 TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVG 179

Query: 217 AAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH 256
            AGGVGS+  Q A      TVI T S  E     K  G HH
Sbjct: 180 GAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH 220

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  156 bits (396), Expect = 4e-46
 Identities = 66/197 (33%), Positives = 91/197 (46%), Gaps = 13/197 (6%)

Query: 71  KAIRVYEH---GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPF 127
           KAI   +     D  + K  +++I EP   EI V+ ++I +N +D   R      +K P 
Sbjct: 4   KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLM--DVSKAPR 61

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVI 185
             G +A+G V +VG  +T    GDI+ Y+G     GS AE Q++    V   P +I    
Sbjct: 62  VLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQ 121

Query: 186 AASIMLKGMTA------QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239
           A S+ L G+TA       F + R      G T+LI   AGGVGS+  Q A A G  VI T
Sbjct: 122 AVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITT 181

Query: 240 VSTKEKAAQAKDDGCHH 256
            S  E     K  G   
Sbjct: 182 ASRNETIEWTKKMGADI 198

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  154 bits (392), Expect = 1e-44
 Identities = 50/245 (20%), Positives = 83/245 (33%), Gaps = 48/245 (19%)

Query: 58  KAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK 117
            A        +M K   V +    + L+  +V + E    E+ V   A  +N+  V+   
Sbjct: 26  LALHLRAEDADMFKG--VADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAM 83

Query: 118 GVY------------------KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD-------- 151
                                +  +     G +  G VV  G G+     GD        
Sbjct: 84  FEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH 143

Query: 152 ------------------IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKG 193
                                      G  AE  ++ A++++P P+ +    AA   L  
Sbjct: 144 VDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 194 MTAQFLL--RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251
            TA  +L   R  +++ G  VLI  A+GG+GS   Q+    G   +  VS+ +K A  + 
Sbjct: 204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA 263

Query: 252 DGCHH 256
            GC  
Sbjct: 264 LGCDL 268

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  146 bits (369), Expect = 8e-42
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 56  ATKAAAETRTRTNMVKAIRVYEHGDPEVLKW-EDVEIGEPG-EGEIRVRNKAIGLNFIDV 113
           ++     T        A  + ++G  EVL++ +++ +       E+ V+  A  +N IDV
Sbjct: 8   SSGVDLGTENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDV 67

Query: 114 YYRKGVYKPA---------------KMPFTPGMEAVGEVVAVGPGLTGRTVGD-IIAYAG 157
             R G    A               + P T G +  G V+  G  +     GD + A   
Sbjct: 68  NMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP 127

Query: 158 G-AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA-QFLLRR---CFKVEPGHTV 212
               G+ +E  ++  N+V   P S+    AAS+    +TA   + +      K   G  V
Sbjct: 128 PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRV 187

Query: 213 LIQAAAGGVGSLLCQWANALGATVIGTVSTK 243
           LI  A+GGVG+   Q   A  A V    S  
Sbjct: 188 LILGASGGVGTFAIQVMKAWDAHVTAVCSQD 218

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  138 bits (349), Expect = 3e-39
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 38/221 (17%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--------P 122
           +A+R+ E G P  L  +++ + +P   ++ ++ +A G+   DV+ R+G +          
Sbjct: 2   RAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLG 59

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGD--IIAYAGGAM-------------------- 160
            K+P T G E  G++  VG  + G + GD   +    G                      
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119

Query: 161 ----GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA 216
               G+YAE  I+P  K +     ++ V AA +   G+T    +R+   ++P  T+L+  
Sbjct: 120 INFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKA-SLDPTKTLLVVG 178

Query: 217 AAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH 256
           A GG+G++  Q A A+ GAT+IG    +E    AK  G  +
Sbjct: 179 AGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY 219

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  133 bits (336), Expect = 1e-35
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 9/172 (5%)

Query: 79  GDPEVLKWEDVEI--GEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGE 136
           G  + L   D        G+GE+R+  +A G+NF D     G+Y       + G E  G 
Sbjct: 219 GSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVA---SLGSEGAGV 275

Query: 137 VVAVGPGLTGRTVGD-IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195
           VV  GPG+TG   GD ++     A G  A   +     V  +P+      AAS+ +  +T
Sbjct: 276 VVETGPGVTGLAPGDRVMGMIPKAFGPLA---VADHRMVTRIPAGWSFARAASVPIVFLT 332

Query: 196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
           A + L     + PG ++L+ +AAGGVG    Q A  LGA V  T S  +  A
Sbjct: 333 AYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQA 384

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  125 bits (315), Expect = 5e-34
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
                A+ V +H +  V              ++ VR +A+ +N  D   R     P    
Sbjct: 10  PQQ-TALTVNDHDEVTVW--NAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATP---W 63

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM-------GSYAEEQILPANKVVPVPS 179
              G +  G VVAVG  +T   VGD +  A   M       G++++  +        +P 
Sbjct: 64  AFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPK 123

Query: 180 SIDPVIAASIMLKGMTAQFLLRRCFKVEP------------GHTVLIQAAAGGVGSLLCQ 227
            +    AA++     TA   ++      P               VL+   +    ++  Q
Sbjct: 124 GLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQ 183

Query: 228 WANALGATVIGTVSTK 243
                G   I T S  
Sbjct: 184 MLRLSGYIPIATCSPH 199

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  122 bits (308), Expect = 4e-33
 Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--KPAKMPF 127
           +KA++  E G        D+    PG GEI ++  A GL   D++            +P 
Sbjct: 1   MKAVQYTEIGSE--PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPL 58

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGD-------------------------------IIAYA 156
           T G E VG V  +G G+TG  VGD                               I    
Sbjct: 59  TLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPG 118

Query: 157 GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQ 215
            G+ GS AE  I+ + + +     +DPV AA +   G+T    + R    + PG T ++ 
Sbjct: 119 LGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVI 178

Query: 216 AAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
              GG+G +  Q   A+ A  VI      ++ A A++ G   
Sbjct: 179 -GVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADA 219

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  118 bits (297), Expect = 1e-31
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 37/221 (16%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA--KMP 126
             KA  + +  +P  L  EDV I EP   E+ +R    G+   D+   KGV      ++P
Sbjct: 3   KSKAALLKKFSEP--LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGD--IIAYAGG------------------------AM 160
              G E  G +V VG        GD  ++    G                          
Sbjct: 61  IILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTN 119

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAA 217
           G ++E  ++ +++ +   +S+ PV AA +   G T+   +R+            V++   
Sbjct: 120 GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVN-G 178

Query: 218 AGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKDDGCHH 256
            GG+     Q   AL    T++G   +K+    A + G  +
Sbjct: 179 IGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY 219

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  116 bits (292), Expect = 8e-31
 Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMP 126
           KA R++E+  P  L+ EDV+     G  ++ VR    G+   D++  +G++      K+P
Sbjct: 17  KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 74

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGD--IIAYAGGAM------------------------ 160
           +T G E VG +  V  G+ G   GD  I+  A                            
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNID 134

Query: 161 GSYAEEQILPANKVVPVPSSIDP---VIAASIMLKGMTAQFLLRR-CFKVEPGHTVLIQA 216
           G +AE        V+ +P  I     V  A +   G+TA   +++    + PG  V I  
Sbjct: 135 GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIV- 193

Query: 217 AAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCHH 256
             GG+G +  Q    +  ATVI     +EK   A+  G  H
Sbjct: 194 GVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  112 bits (283), Expect = 1e-29
 Identities = 66/215 (30%), Positives = 92/215 (42%), Gaps = 32/215 (14%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFT 128
           +KA  V +  +P  LK ++VE      GE+ VR KA G+   D++   G +    K+P  
Sbjct: 1   MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58

Query: 129 PGMEAVGEVVAVGPGLTGRTVGDI--IAYAGGA-------------------------MG 161
           PG E VG V  VGPG+T   VGD   I +   A                          G
Sbjct: 59  PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118

Query: 162 SYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
            YAE     A+ VV +P ++    AA I   G+T    L+     +PG  V I    GG+
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGI-GGL 176

Query: 222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           G +  Q+A A+G  V+      EK   AK+ G   
Sbjct: 177 GHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADL 211

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  111 bits (279), Expect = 5e-29
 Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPF 127
           M+KA  V   G P  L  ++V + +PG G+++V+ +A G+   D++   G +     +PF
Sbjct: 2   MMKAAVVRAFGAP--LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPF 59

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDI--IAYAGGA-------------------------M 160
            PG E VG V AVG G++    GD   + +   A                          
Sbjct: 60  IPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVN 119

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG 220
           G Y E  +   N V  +P  +  V  A I+  G+T    L+      PG  V+I    GG
Sbjct: 120 GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKV-TDTRPGQWVVISGI-GG 177

Query: 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +G +  Q+A A+G  V        K   A+  G   
Sbjct: 178 LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEV 213

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  106 bits (268), Expect = 2e-27
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 31/216 (14%)

Query: 69  MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPF 127
             K +  YE      L+++D+ + +P   E+ +  K  G+   D++   G +  P K+P 
Sbjct: 5   TQKGVIFYESHGK--LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPL 62

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDI--IAYAGGA-------------------------M 160
             G E  G VV +G  + G  +GD   I +  G+                          
Sbjct: 63  VGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHD 122

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG 220
           GS+ +     A +   +P   D    A I+  G+T    L+    +  GH V I  AAGG
Sbjct: 123 GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAAGG 181

Query: 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           +GSL  Q+A A+G  V+G    + K    +  G   
Sbjct: 182 LGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEV 217

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 97.3 bits (243), Expect = 1e-23
 Identities = 51/232 (21%), Positives = 77/232 (33%), Gaps = 45/232 (19%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
                A+ + +   P  L +++ EI +   G I V   + G+   DV+  +G      +P
Sbjct: 15  GLKAHAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLP 72

Query: 127 FTPGMEAVGEVVAVGPGLTGRT-----VGDIIAYAGGA---------------------- 159
              G E  G VV V              GD+I +  G                       
Sbjct: 73  IILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV 132

Query: 160 -------------MGSYAEEQIL-PANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK 205
                         G Y+   +L P   V+ V    D  + A  M  G TA        +
Sbjct: 133 YGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPE 192

Query: 206 VEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
              G TV+IQ A G +G      A +LGA  VI    +  +   A++ G   
Sbjct: 193 SFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL 243

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 94.6 bits (236), Expect = 8e-23
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 50/245 (20%)

Query: 47  LKHKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAI 106
           + H    +       E     +M+KA+R+   G+   +   +V I EPG  ++ V+ +A 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMMKAVRLESVGN---ISVRNVGIPEPGPDDLLVKVEAC 57

Query: 107 GLNFI---DVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD------------ 151
           G   I   D +   G + P+  P T G E  G VV  G  +     G             
Sbjct: 58  G---ICGTDRHLLHGEF-PSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGR 113

Query: 152 --------------IIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA-----SIMLK 192
                         + A      G +AE  ++P  +   +P ++DPV  A     +  L 
Sbjct: 114 CPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH 173

Query: 193 GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKD 251
           G+           ++ G TV I    G +G L  Q A   GAT VI +     K   A++
Sbjct: 174 GV-------DLSGIKAGSTVAI-LGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE 225

Query: 252 DGCHH 256
            G   
Sbjct: 226 VGATA 230

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 95.7 bits (238), Expect = 2e-22
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 79   GDPEVLKWEDVEIGEP---GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVG 135
            GD   ++W    +         +         LNF DV    G   P  +P   G     
Sbjct: 1539 GDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIP---GKWLTR 1595

Query: 136  EVVAVGPGLTGRTVGDII--AYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKG 193
            + +           G  +        + +     +L  +    VPS+     AAS+ +  
Sbjct: 1596 DCMLGMEFSGRDASGRRVMGMVPAEGLATSV---LLLQHATWEVPSTWTLEEAASVPIVY 1652

Query: 194  MTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247
             TA + L    +++PG +VLI + +GGVG      A + G  V  TV + EK A
Sbjct: 1653 TTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRA 1706

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 36/206 (17%)

Query: 69  MVKAIRV----YEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           MVKA       +  G P     + + VE+     GE+ +    + +   D Y R      
Sbjct: 5   MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSV---DPYMR------ 55

Query: 123 AKM-PFTPG--ME--AVGEVVAVG-PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVP 176
                   G  M    V  VV            G I+     A   +    I     +  
Sbjct: 56  IASKRLKEGAVMMGQQVARVVESKNSAFP---AGSIVL----AQSGWTTHFISDGKGLEK 108

Query: 177 VPSSIDPVIAASIML-----KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANA 231
           + +     +  S+ L      G+TA F L     V+ G TVL+ AAAG VGS++ Q A  
Sbjct: 109 LLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL 168

Query: 232 LGATVIGTVSTKEKAAQAKD---DGC 254
            G  V+G   + EK A  K    D  
Sbjct: 169 KGCKVVGAAGSDEKIAYLKQIGFDAA 194

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 48/223 (21%), Positives = 74/223 (33%), Gaps = 53/223 (23%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFI---DV-YYRKGVYKPAKM 125
           K++     G    ++  +  I E   + E+RV+  + G   +   D+    K        
Sbjct: 2   KSVVNDTDGI---VRVAESVIPEIKHQDEVRVKIASSG---LCGSDLPRIFKN--GAHYY 53

Query: 126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM------------------------- 160
           P T G E  G + AVG G+     GD +A                               
Sbjct: 54  PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR 113

Query: 161 -GSYAEEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPGHTVLI 214
            G +AE  ++    V  +P+ +     A     ++ L             +      V+I
Sbjct: 114 DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAF------HLA-QGCENKNVII 166

Query: 215 QAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
              AG +G L  Q A ALGA  V     + EK A AK  G   
Sbjct: 167 -IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ 208

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 50/204 (24%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI---DV-YYRKGV--YKPAK 124
           +A+      +   L   D  + EPG GEI VR +A     I   D+  ++         +
Sbjct: 2   RALAKLAPEEG--LTLVDRPVPEPGPGEILVRVEAAS---ICGTDLHIWKWDAWARGRIR 56

Query: 125 MPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM------------------------ 160
            P   G E  G V AVGPG+    VGD ++     +                        
Sbjct: 57  PPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVD 116

Query: 161 --GSYAEEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPGHTVL 213
             G +AE  ++PA      P  +   +AA        +  +              G +VL
Sbjct: 117 RDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTV-------YAGSGVSGKSVL 169

Query: 214 IQAAAGGVGSLLCQWANALGATVI 237
           I   AG +G +      A GA  I
Sbjct: 170 I-TGAGPIGLMAAMVVRASGAGPI 192

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 50/208 (24%), Positives = 77/208 (37%), Gaps = 51/208 (24%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI---DV-YYRKG--VY 120
           +  + AI   + G     +  +V++ +PG GE+ ++  A     I   D+  Y       
Sbjct: 2   SEKMVAIMKTKPG--YGAELVEVDVPKPGPGEVLIKVLATS---ICGTDLHIYEWNEWAQ 56

Query: 121 KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA-------------------------- 154
              K P   G E  GEVV +GPG+ G  VGD ++                          
Sbjct: 57  SRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI 116

Query: 155 YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLLRRCFKVEPG 209
           +     G +AE  ++PA  +   P SI P  A         +  + A  +         G
Sbjct: 117 FGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI--------SG 168

Query: 210 HTVLIQAAAGGVGSLLCQWANALGATVI 237
            +VLI   AG +G L    A A GA  +
Sbjct: 169 KSVLI-TGAGPLGLLGIAVAKASGAYPV 195

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 55/217 (25%), Positives = 84/217 (38%), Gaps = 44/217 (20%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDV-YYRKGVYKP--AKMPF 127
            +  +Y+  D   L+ E   I EP E E+ ++   +G+   DV YY  G       K P 
Sbjct: 6   LSAVLYKQND---LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPM 62

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIA-------------------------YAG--GAM 160
             G EA G VV VG  +     GD +A                         +       
Sbjct: 63  VIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD 122

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLK----GMTAQFLLRRCFKVEPGHTVLIQA 216
           G+ A   +  A+    +P ++     A  +L+    G+ A    RR   V+ G TVL+  
Sbjct: 123 GNLARYYVHAADFCHKLPDNVSLEEGA--LLEPLSVGVHA---CRRA-GVQLGTTVLV-I 175

Query: 217 AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253
            AG +G +    A A GA V+ T  +  +   AK+ G
Sbjct: 176 GAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG 212

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 38/210 (18%)

Query: 83  VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP 142
             K  D      G  ++ +     G+   D++     +K    P  PG E  G +  VG 
Sbjct: 16  HFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGK 75

Query: 143 GLTGRTVGDIIA----------------------------------YAGG--AMGSYAEE 166
           G+    +GD++                                   +      MG Y+  
Sbjct: 76  GVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNN 135

Query: 167 QILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC 226
            ++  N V+ V  +      A ++  G+T    L+   KV  G  V + A  GG+GS+  
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKF-SKVTKGTKVGV-AGFGGLGSMAV 193

Query: 227 QWANALGATVIGTVSTKEKAAQAKDDGCHH 256
           ++A A+GA V      + K   A   G  H
Sbjct: 194 KYAVAMGAEVSVFARNEHKKQDALSMGVKH 223

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 25/86 (29%), Positives = 40/86 (46%)

Query: 171 ANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWAN 230
           ++ VVP+P ++    AA+  +  +TA   L    ++ PG  VLI +A GGVG      A 
Sbjct: 1   SDLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAK 60

Query: 231 ALGATVIGTVSTKEKAAQAKDDGCHH 256
            +GA +  T  +  K       G  +
Sbjct: 61  MIGARIYTTAGSDAKREMLSRLGVEY 86

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 47/201 (23%), Positives = 74/201 (36%), Gaps = 23/201 (11%)

Query: 68  NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID---VYYRKGVYKPAK 124
           +  +A  V +         + + + +  EG++ VR     +N+ D         + K   
Sbjct: 2   SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVK--T 59

Query: 125 MPFTPGMEAVGEVVA-----VGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVV 175
            PF PG++  G VV+        G     TG  +G  + + GG    Y+E   L    +V
Sbjct: 60  YPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIG--VTHFGG----YSEYARLHGEWLV 113

Query: 176 PVPSSIDPVIAASIMLKGMTAQF---LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL 232
           P+P  +    A +I   G TA      L           VL+  A GGVGSL        
Sbjct: 114 PLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR 173

Query: 233 GATVIGTVSTKEKAAQAKDDG 253
           G TV  +     +    +  G
Sbjct: 174 GYTVEASTGKAAEHDYLRVLG 194

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 22/188 (11%)

Query: 80  DPEVLKWEDVEIGEP---GEGEIRVRNKAIGLNFIDVYYR------KGVYKPAKMPFTPG 130
                 +    +      G   + V+N  +     D Y R                +TPG
Sbjct: 19  TESDFDFTTTTVELRVPEGTNSVLVKNLYLSC---DPYMRIRMGKPDPSTAALAQAYTPG 75

Query: 131 --ME--AVGEVVAVG-PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI 185
             ++   V  ++  G P       GD++         Y+    +         + +    
Sbjct: 76  QPIQGYGVSRIIESGHPDYK---KGDLLWGIVA-WEEYSVITPMTHAHFKIQHTDVPLSY 131

Query: 186 AASIM-LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244
              ++ + GMTA          + G TV + AA+G VG L+ Q A  +G  V+G+  +KE
Sbjct: 132 YTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE 191

Query: 245 KAAQAKDD 252
           K    K  
Sbjct: 192 KVDLLKTK 199

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 42/244 (17%)

Query: 49  HKQSKALATKAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGL 108
           H     L + +  +       +KA+  Y    P  L+  D+   EPG  ++++     G+
Sbjct: 4   HHHHHHLESTSLYKKAGLK--IKAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGV 59

Query: 109 NFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA-------------- 154
              D++  +  +     P  PG E VG VVAVG  +     GD++               
Sbjct: 60  CHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEEC 119

Query: 155 --------------YAG-------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIML-K 192
                         Y           +G Y+++ ++    V+ +    + + A + +L  
Sbjct: 120 EDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCA 179

Query: 193 GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252
           G+T    LR  ++  PG  V +    GG+G +  + A+A+GA V+   +++ K   AK  
Sbjct: 180 GITTYSPLRH-WQAGPGKKVGV-VGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL 237

Query: 253 GCHH 256
           G   
Sbjct: 238 GADE 241

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 74.7 bits (184), Expect = 8e-16
 Identities = 40/202 (19%), Positives = 81/202 (40%), Gaps = 23/202 (11%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID---VYYRKGVYKPA 123
           + + +A++  ++ D   +  + +   +  +  + ++    G+N+ D         + +  
Sbjct: 2   STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVR-- 59

Query: 124 KMPFTPGMEAVGEVVA-----VGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKV 174
           + P   G++A G VV+        G     T   +G  ++  GG     +E   +P + +
Sbjct: 60  EYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELG--VSRDGG----LSEYASVPGDWL 113

Query: 175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANA 231
           VP+P ++    A      G TA   + R  +        +VL+  A GGVG +     N 
Sbjct: 114 VPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNK 173

Query: 232 LGATVIGTVSTKEKAAQAKDDG 253
            G  V+ +   +E A   K  G
Sbjct: 174 RGYDVVASTGNREAADYLKQLG 195

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 34/216 (15%)

Query: 59  AAAETRTRTNMVKAIRVYEHGDP--EVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYY 115
           AAA       +V   R  ++G+P  E  + E+V + +   EG+++VR   + +   D Y 
Sbjct: 2   AAAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSV---DPYM 58

Query: 116 R-------KGVYKPAKMPFTPG--ME--AVGEVVAVG-PGLTGRTVGDIIAYAGGAMGSY 163
           R          Y     P+     ++   +G +       LT    GD +         +
Sbjct: 59  RCRMNEDTGTDYIT---PWQLSQVVDGGGIGIIEESKHTNLT---KGDFVT---SFYWPW 109

Query: 164 AEEQILPANKVVPVPSSIDPV---IAASIM-LKGMTAQFLLRRCFKVEPGH--TVLIQAA 217
             + IL  N +  V   +           + + G+T+   ++    +  G   T+++  A
Sbjct: 110 QTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGA 169

Query: 218 AGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDD 252
           AG  GS+  Q  + LG + V+G   T EK      +
Sbjct: 170 AGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE 205

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 40/211 (18%)

Query: 83  VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP 142
           +L      + E G  ++ +R    G+   D++  K     +  P  PG E VGEVV VG 
Sbjct: 21  ILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGS 80

Query: 143 GLTGRTVGDIIA--------------------------------YAGG--AMGSYAEEQI 168
            ++  TVGDI+                                 Y  G    G +A+  +
Sbjct: 81  DVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATV 140

Query: 169 LPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQ 227
           +    VV +P  +    AA ++  G+T    L   F + +PG    I    GGVG +  +
Sbjct: 141 VHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSH-FGLKQPGLRGGI-LGLGGVGHMGVK 198

Query: 228 WANALGA--TVIGTVSTKEKAAQAKDDGCHH 256
            A A+G   TVI + + K + A  +D G   
Sbjct: 199 IAKAMGHHVTVISSSNKKREEA-LQDLGADD 228

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 23/202 (11%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFID---VYYRKGVYKPAKMP 126
           ++A+ + +     +   + +E  +   G++ V      LN+ D   +  +  + +    P
Sbjct: 1   MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIR--HFP 58

Query: 127 FTPGMEAVGEVVA-----VGPG----LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPV 177
             PG++  G V A        G    LTG  VG    + GG     AE   +  + +V +
Sbjct: 59  MIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVG--ENHWGG----LAERARVKGDWLVAL 112

Query: 178 PSSIDPVIAASIMLKGMTAQ---FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
           P+ +    A  I   G TA      L           V++  A+GGVGS      + LG 
Sbjct: 113 PAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY 172

Query: 235 TVIGTVSTKEKAAQAKDDGCHH 256
            V      +      K  G + 
Sbjct: 173 QVAAVSGRESTHGYLKSLGANR 194

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 51/210 (24%)

Query: 65  TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI---DV-YYRKGVY 120
            + N   ++ V+  GD   L+ E+  I EPG  E+ +R  ++G   I   DV Y+  G  
Sbjct: 4   AKPNN-LSLVVHGPGD---LRLENYPIPEPGPNEVLLRMHSVG---ICGSDVHYWEYGRI 56

Query: 121 KPA--KMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA------------------------ 154
                K P   G EA G V  VG  +     GD +A                        
Sbjct: 57  GNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSI 116

Query: 155 -YAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLK----GMTAQFLLRRCFKVE 207
            +       G+        A     +P ++     A  +++    G+ A    RR   V 
Sbjct: 117 FFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGA--LIEPLSVGIHA---CRRG-GVT 170

Query: 208 PGHTVLIQAAAGGVGSLLCQWANALGATVI 237
            GH VL+   AG +G +    A A+GA  +
Sbjct: 171 LGHKVLV-CGAGPIGMVTLLVAKAMGAAQV 199

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 71.8 bits (177), Expect = 9e-15
 Identities = 48/239 (20%), Positives = 76/239 (31%), Gaps = 59/239 (24%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           + A      G     + + ++I +P   E+ V+  A G+   D+  R   Y P  +P   
Sbjct: 7   IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY-PVPLPAVL 63

Query: 130 GMEAVGEVVAVGPGLTGRTVGD--IIAYA------------------------GGAM--- 160
           G E  G + A+GP +T   VGD  +++Y                          GA    
Sbjct: 64  GHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 123

Query: 161 -------------------GSYAEEQILPANKVVPVPSSIDPVIAASI---MLKGMTAQF 198
                               S+A   +   N  V V   +   +   +   +  G  A  
Sbjct: 124 NHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACI 183

Query: 199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256
                 KV P  + +    AG VG      A   GA  +I     + +   AK  G  H
Sbjct: 184 ---NALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH 238

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 69.5 bits (171), Expect = 6e-14
 Identities = 51/237 (21%), Positives = 77/237 (32%), Gaps = 57/237 (24%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E G P  L  E++E+  P   E+R++  A  +   D Y   G       P   G
Sbjct: 8   KAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILG 65

Query: 131 MEAVGEVVAVGPGLTGRTVGD--IIAYAG-------------------------GAM--- 160
               G V +VG G+T    GD  I  Y                           G M   
Sbjct: 66  HLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDG 125

Query: 161 -----------------GSYAEEQILPANKVVPVPSSIDPVIAASI---MLKGMTAQFLL 200
                             +++E  ++    V  +           +   +  G  A    
Sbjct: 126 TSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAV-- 183

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
               K+EPG    +    GGVG  +       GA+ +IG    K+K A+AK+ G   
Sbjct: 184 -NTAKLEPGSVCAV-FGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE 238

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 36/236 (15%), Positives = 63/236 (26%), Gaps = 59/236 (25%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFI---DVYYRKG-----VYK 121
           KAI V        ++ +DV+  +    G+I++R    G   I   D     G        
Sbjct: 2   KAIIVKPPN--AGVQVKDVDEKKLDSYGKIKIRTIYNG---ICGADREIVNGKLTLSTLP 56

Query: 122 PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA-------------------------YA 156
             K     G EA+G V     G +    GD++                          + 
Sbjct: 57  KGKDFLVLGHEAIGVVEESYHGFS---QGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG 113

Query: 157 GGAM----GSYAEEQILPANKVVPVPSSIDPVIA----ASIMLKGM-------TAQFLLR 201
              +    G   E        +V +P SI+ +       + + K +           +  
Sbjct: 114 EAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWT 173

Query: 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
                     VL+    G +G L        G    +       +  Q   +    
Sbjct: 174 CDDGTLNCRKVLV-VGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT 228

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 37/222 (16%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
            + I +  H D +  K    +     + +I ++ +A G+   D++   G +   KMP   
Sbjct: 7   FEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVV 66

Query: 130 GMEAVGEVVAVGPG-LTGRTVGDIIA--------------------------------YA 156
           G E VG+VV +GP   +G  VG  +                                 Y 
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYE 126

Query: 157 GG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
            G  + G YA    +  + VVP+P +I   +AA ++  G+T    L R     PG  V I
Sbjct: 127 DGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGI 185

Query: 215 QAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256
               GG+GS+    + A+GA       +  K   A   G  H
Sbjct: 186 -VGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH 226

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 42/235 (17%)

Query: 59  AAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG 118
           + +               +      L   +      GE ++R +    G+   D++  K 
Sbjct: 6   SKSPEEEHPVKAFGWAARDQSGH--LSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKN 63

Query: 119 VYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA------------------------ 154
            +  +  P  PG E VGEV  VG  +    VGD +                         
Sbjct: 64  DWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPK 123

Query: 155 --------YAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF 204
                   Y  G    G Y+   +     ++  P ++     A ++  G+T    L+  F
Sbjct: 124 MILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKY-F 182

Query: 205 KV-EPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKDDGCHH 256
            + EPG  + I    GG+G +  ++A A G+  TVI T  +K++ A  K+ G   
Sbjct: 183 GLDEPGKHIGI-VGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEA-LKNFGADS 235

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 58/250 (23%)

Query: 58  KAAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFI---DV 113
           K   +           +V+ + +   ++ E+V         EI ++ KA G   I   DV
Sbjct: 19  KLGPKDIEGKLTWLGSKVWRYPE---VRVEEVPEPRIEKPTEIIIKVKACG---ICGSDV 72

Query: 114 YYRKG-------VYKPAKMPFTPGMEAVGEVVAVGPGLTGRT------VGDIIA------ 154
           +  +               P T G E  G VV  GP    R       +G+ +       
Sbjct: 73  HMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW 132

Query: 155 --------------------YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKG- 193
                                     G++AE   + A     +           + L G 
Sbjct: 133 CGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGS 192

Query: 194 ------MTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKA 246
                 +    ++ R   + PG  V+I    G +G          GA+ VI +  ++ + 
Sbjct: 193 LVEPTSVAYNAVIVRGGGIRPGDNVVI-LGGGPIGLAAVAILKHAGASKVILSEPSEVRR 251

Query: 247 AQAKDDGCHH 256
             AK+ G  H
Sbjct: 252 NLAKELGADH 261

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 48/237 (20%), Positives = 76/237 (32%), Gaps = 57/237 (24%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E   P  L  E++E+  P   EIR++  A G+   D+Y+          P   G
Sbjct: 10  KAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLG 67

Query: 131 MEAVGEVVAVGPGLTGRTVGD--IIAYAG-------------------------GAM--- 160
            E  G V +VGPG+T    G+  I  +                             M   
Sbjct: 68  HEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPK 127

Query: 161 -----------------GSYAEEQILPANKVVPVPSSIDPVIAASI---MLKGMTAQFLL 200
                             ++++  ++    V  +  S        +   +  G  A    
Sbjct: 128 ETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAV-- 185

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
               KVEPG T  +    G VG       ++ GA  +I      +K  +AK  G   
Sbjct: 186 -NTAKVEPGSTCAV-FGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 40/233 (17%), Positives = 63/233 (27%), Gaps = 56/233 (24%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI---DV-YYRKG--VYKPAK 124
           KAI V      +     +    EP  GE  VR   +G   +   D      G   +   +
Sbjct: 2   KAIAVKR--GEDRPVVIEKPRPEPESGEALVRTLRVG---VCGTDHEVIAGGHGGFPEGE 56

Query: 125 MPFTPGMEAVGEVVAVGPGLTGRTVGDIIA---------------------------YAG 157
                G EAVG VV   P  T    GDI+                            Y  
Sbjct: 57  DHLVLGHEAVGVVV--DPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE 114

Query: 158 GAM----GSYAEEQILPANKVVPVPSSIDPVIA----ASIMLKGMTAQFLLRRCFKVEPG 209
             +    G  +E    P   +V +P S   +       SI  K +       R       
Sbjct: 115 RGIVGAHGYMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE-HAYASRSAFDWDP 173

Query: 210 HTVLIQAAAGGVGSLLCQWANA--LGATVIGTVSTKE----KAAQAKDDGCHH 256
            +  +    G +G L          G   +  +  ++         ++    +
Sbjct: 174 SSAFV-LGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATY 225

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 58/237 (24%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  ++E   P     E+VE+  P   E+R++  A G+   D +   G      +P   G
Sbjct: 10  KAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTPLPVIAG 66

Query: 131 MEAVGEVVAVGPGLTGRTVGD--IIAYAG-------------------------GAM--- 160
            EA G V ++G G+T    GD  I  +                           G M   
Sbjct: 67  HEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDG 126

Query: 161 -----------------GSYAEEQILPANKVVPVPSSIDPVIAASI---MLKGMTAQFLL 200
                             ++++  ++    V  + ++        I      G  +    
Sbjct: 127 TSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV-- 184

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256
            +  KV  G T  +    GGVG  +     A GA  +IG    K+K A+AK+ G   
Sbjct: 185 -KVAKVTQGSTCAV-FGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
            KA   +E   P  L  E + +  P   E+R++  A G+   D    K +  P+K P   
Sbjct: 10  CKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSKFPVIL 66

Query: 130 GMEAVGEVVAVGPGLTGRTVGD 151
           G EAVG V ++G G+T    GD
Sbjct: 67  GHEAVGVVESIGAGVTCVKPGD 88

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
            KA   ++ G P  L  E++E+  P   E+R++  A  +   D+         A  P   
Sbjct: 9   CKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KALFPVVL 65

Query: 130 GMEAVGEVVAVGPGLTGRTVGD 151
           G E  G V +VGPG+T    GD
Sbjct: 66  GHECAGIVESVGPGVTNFKPGD 87

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 44/217 (20%), Positives = 69/217 (31%), Gaps = 50/217 (23%)

Query: 59  AAAETRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFI---DV-Y 114
           ++A                  +         +  E  EGE+ V  ++ G   I   DV +
Sbjct: 3   SSASKTNIGVFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTG---ICGSDVHF 59

Query: 115 YRKGVYKP--AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM------------ 160
           ++ G   P   +     G E+ GEV+AV P +    VGD +A     +            
Sbjct: 60  WKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRY 119

Query: 161 ---------------GSYAEEQILPANKVVPVPSSIDPVIAA-----SIMLKGMTAQFLL 200
                          G        PA     +  ++     A     S+ L G+      
Sbjct: 120 NGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLSVALAGL------ 172

Query: 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVI 237
           +R   V  G  VLI   AG +G +    A A GA  +
Sbjct: 173 QR-AGVRLGDPVLI-CGAGPIGLITMLCAKAAGACPL 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.92
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.54
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.47
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.49
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.49
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.42
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.35
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.32
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.16
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.09
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.93
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.85
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.77
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.68
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.67
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.63
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.55
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.54
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.49
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.47
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.46
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.45
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.45
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.39
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.39
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.39
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.38
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.38
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.36
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.34
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.33
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.32
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.31
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.31
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.31
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.3
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.27
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.26
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.25
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.25
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.23
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.23
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.22
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.22
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.21
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.16
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.16
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.15
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.14
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.12
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.09
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.08
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.08
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.08
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.06
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.06
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.04
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.0
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.99
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.95
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.92
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	95.91
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.89
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.85
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.84
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.81
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.81
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.79
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.77
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.76
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.75
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.74
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.73
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.69
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.62
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.57
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.57
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	95.54
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.53
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.52
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.51
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.45
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.44
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.43
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.38
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.33
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.32
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.31
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.28
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.26
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.21
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.2
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.2
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.19
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.18
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.08
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.06
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.05
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.04
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.02
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	94.97
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.95
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.93
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.9
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.89
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	94.85
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.69
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	94.67
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.64
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.61
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	94.58
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.5
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.32
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.27
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.17
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.14
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.11
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.1
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	94.09
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.03
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	93.91
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	93.91
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	93.83
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	93.83
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.82
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	93.77
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	93.74
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.74
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	93.74
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	93.7
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.69
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.67
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	93.64
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	93.63
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.59
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	93.56
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	93.52
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	93.42
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.36
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.34
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.32
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.31
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	93.21
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	93.21
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	93.09
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.09
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	93.06
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	92.98
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	92.98
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	92.97
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	92.92
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	92.91
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	92.89
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	92.86
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	92.86
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	92.82
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.81
3l07_A	285	Bifunctional protein fold; structural genomics, ID	92.8
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	92.71
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	92.69
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	92.64
4f6c_A	427	AUSA reductase domain protein; thioester reductase	92.58
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	92.54
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.53
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	92.52
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	92.49
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.42
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	92.39
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.37
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	92.35
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	92.28
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	92.26
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	92.21
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	92.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	92.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	92.05
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.03
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	92.01
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.94
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	91.93
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	91.91
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	91.84
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	91.83
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	91.78
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	91.74
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.63
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	91.44
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.32
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	91.29
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	91.2
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	91.18
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	91.16
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.11
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.1
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	90.98
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	90.96
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	90.9
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	90.88
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.82
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	90.8
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	90.8
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	90.76
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	90.75
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	90.69
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	90.49
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	90.41
2b25_A	336	Hypothetical protein; structural genomics, methyl	90.37
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	90.37
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.3
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.24
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	90.2
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	90.16
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	90.1
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	90.03
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	89.96
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	89.73
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	89.69
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	89.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.5
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	89.47
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	89.4
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	89.4
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	89.33
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.07
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	89.01
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	88.97
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	88.88
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	88.77
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	88.76
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	88.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	88.67
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	88.6
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	88.37
3f4k_A	257	Putative methyltransferase; structural genomics, P	88.36
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.3
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	88.19
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	88.08
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.01
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	87.99
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	87.99
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	87.94
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	87.93
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	87.92
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.87
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	87.86
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	87.85
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	87.72
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	87.53
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.48
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	87.39
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	87.37
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	87.35
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	87.31
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	87.19
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	87.18
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	87.11
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	87.1
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	87.04
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	87.04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.04
4f6l_B	508	AUSA reductase domain protein; thioester reductase	86.99
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.89
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	86.89
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	86.86
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	86.8
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	86.78
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	86.7
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	86.48
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	86.46
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	86.39
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	86.31
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	86.03
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	85.92
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	85.88
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	85.73
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	85.6
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	85.6
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	85.57
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	85.56
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	85.5
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	85.43
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	85.32
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	85.01
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	84.98
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	84.96
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	84.88
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	84.76
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	84.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	84.53
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	84.42
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	84.39
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	84.38
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	84.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	84.08
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	84.07
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	83.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	83.86
3on5_A	362	BH1974 protein; structural genomics, joint center	83.84
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	83.81
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	83.61
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	83.54
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	83.51
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	83.48
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	83.38
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	83.31
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	83.26
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	83.23
4ezb_A	317	Uncharacterized conserved protein; structural geno	83.11
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	83.08
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	82.99
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	82.98
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	82.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	82.87
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	82.81
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	82.75
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	82.74
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	82.72
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	82.36
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	82.31
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	82.29
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	82.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	82.05
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	81.78
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	81.68
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	81.58
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	81.18
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	81.08
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	81.02
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	81.02
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	80.99
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	80.94
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	80.89
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	80.81
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	80.79
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.77
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	80.75
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	80.68
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	80.5
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	80.46
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	80.38
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	80.26
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	80.24
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	80.23
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	80.13

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=5.4e-42  Score=301.95  Aligned_cols=188  Identities=51%  Similarity=0.816  Sum_probs=180.0

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +|||+++++++.++.+++++.+.|+|++|||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|+
T Consensus         1 MMkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~   80 (325)
T 3jyn_A            1 MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFK   80 (325)
T ss_dssp             CEEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CcEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence            39999999999999999999999999999999999999999999999999887767899999999999999999999999


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      +||||++....+|+|+||+++|.+.++++|+++++++|+++++.++|||+++.+.+++++|++|||+||+|++|++++|+
T Consensus        81 ~GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~  160 (325)
T 3jyn_A           81 VGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQW  160 (325)
T ss_dssp             TTCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHH
T ss_pred             CCCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            99999988766799999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+..|++|++++++++|+++++++|+++
T Consensus       161 a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~  188 (325)
T 3jyn_A          161 AKALGAKLIGTVSSPEKAAHAKALGAWE  188 (325)
T ss_dssp             HHHHTCEEEEEESSHHHHHHHHHHTCSE
T ss_pred             HHHCCCEEEEEeCCHHHHHHHHHcCCCE
Confidence            9999999999999999999999999873

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=9.1e-42  Score=303.86  Aligned_cols=193  Identities=32%  Similarity=0.487  Sum_probs=180.8

Q ss_pred             cCCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416           63 TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        63 ~~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG  141 (256)
                      ++..+.+|||+++++++.|+.+++++.|.|+|++|||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus        22 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG  101 (353)
T 4dup_A           22 SMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVG  101 (353)
T ss_dssp             -CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEEC
T ss_pred             cCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEEC
Confidence            345678899999999998999999999999999999999999999999999999998765 3478999999999999999


Q ss_pred             CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChH
Q 036416          142 PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV  221 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~v  221 (256)
                      ++|++|++||||+++.. +|+|+||+++|.+.++++|+++++++||+++.++.|||+++.+.+++++|++|||+||+|++
T Consensus       102 ~~v~~~~vGdrV~~~~~-~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~i  180 (353)
T 4dup_A          102 PGVSGYAVGDKVCGLAN-GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGI  180 (353)
T ss_dssp             TTCCSCCTTCEEEEECS-SCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHH
T ss_pred             CCCCCCCCCCEEEEecC-CCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Confidence            99999999999998754 59999999999999999999999999999999999999999888899999999999989999


Q ss_pred             HHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       222 G~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |++++|+|+..|++|++++++++|+++++++|+++
T Consensus       181 G~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  215 (353)
T 4dup_A          181 GTTAIQLARAFGAEVYATAGSTGKCEACERLGAKR  215 (353)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE
Confidence            99999999999999999999999999999999873

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.9e-41  Score=300.54  Aligned_cols=192  Identities=30%  Similarity=0.433  Sum_probs=179.2

Q ss_pred             cCCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416           63 TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        63 ~~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG  141 (256)
                      +...|.+|||++++.++.|+.+++++.|.|+|++|||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            345678899999999998999999999999999999999999999999999999998754 4689999999999999999


Q ss_pred             CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChH
Q 036416          142 PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV  221 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~v  221 (256)
                      ++++ |++||||+++.. +|+|+||++++.+.++++|+++++++||+++.++.|||+++.+.+++++|++|||+||+|++
T Consensus        95 ~~v~-~~vGDrV~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~i  172 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFNF-IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGI  172 (342)
T ss_dssp             TTSS-CCTTCEEEEECS-SCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHH
T ss_pred             CCCC-CCCCCEEEEecC-CCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHH
Confidence            9999 999999998864 59999999999999999999999999999999999999999888899999999999988999


Q ss_pred             HHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       222 G~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |++++|+|+..|++|++++++++++++++++|+++
T Consensus       173 G~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~  207 (342)
T 4eye_A          173 GTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADI  207 (342)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE
Confidence            99999999999999999999999999999999873

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.2e-41  Score=298.50  Aligned_cols=184  Identities=25%  Similarity=0.310  Sum_probs=172.9

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ++|||+++++  .++.+++++.|.|+|++|||||||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|
T Consensus         3 ~tMka~~~~~--~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   80 (315)
T 3goh_A            3 EQHQVWAYQT--KTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSK   80 (315)
T ss_dssp             CEEEEEEEET--TTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGG
T ss_pred             cceEEEEEeC--CCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCC
Confidence            3599999996  56779999999999999999999999999999999999988766789999999999999999999999


Q ss_pred             CCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416          148 TVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL  225 (256)
Q Consensus       148 ~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~a  225 (256)
                      ++||||++...  .+|+|+||+++|.+.++++|+++++++||+++.++.|||+++ +.+++++|++|||+|+ |++|+++
T Consensus        81 ~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a  158 (315)
T 3goh_A           81 MLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLL  158 (315)
T ss_dssp             GTTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHH
T ss_pred             CCCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHH
Confidence            99999998763  259999999999999999999999999999999999999999 7889999999999998 9999999


Q ss_pred             HHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          226 CQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       226 i~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+|+.+|++|++++ +++|+++++++|+|+
T Consensus       159 ~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~  188 (315)
T 3goh_A          159 TQMLNNAGYVVDLVS-ASLSQALAAKRGVRH  188 (315)
T ss_dssp             HHHHHHHTCEEEEEC-SSCCHHHHHHHTEEE
T ss_pred             HHHHHHcCCEEEEEE-ChhhHHHHHHcCCCE
Confidence            999999999999999 889999999999863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.7e-41  Score=297.61  Aligned_cols=189  Identities=35%  Similarity=0.517  Sum_probs=178.3

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ..+.+||++++++++.++.+++++.|.|+|++|||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|++|
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEECTTC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEECCCC
Confidence            3567899999999998888999999999999999999999999999999999998764 479999999999999999999


Q ss_pred             CccCCCCEEEEeCCCCcceeeEEEec-CCCeEECCCCCCHHH---HhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCCh
Q 036416          145 TGRTVGDIIAYAGGAMGSYAEEQILP-ANKVVPVPSSIDPVI---AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG  220 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~-~~~~~~ip~~~~~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~  220 (256)
                      ++|++||||+++..  |+|+||++++ .+.++++|+++++++   ++++++.+.|||+++.+.+++++|++|||+||+|+
T Consensus        83 ~~~~~GdrV~~~~~--G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~  160 (334)
T 3qwb_A           83 TNFEVGDQVAYISN--STFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGG  160 (334)
T ss_dssp             CSCCTTCEEEEECS--SCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBH
T ss_pred             CCCCCCCEEEEeeC--CcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCH
Confidence            99999999998875  9999999999 999999999999999   88899999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++++|+|+..|++|++++++++|+++++++|+++
T Consensus       161 iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~  196 (334)
T 3qwb_A          161 VGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEY  196 (334)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcE
Confidence            999999999999999999999999999999999873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.8e-41  Score=301.74  Aligned_cols=190  Identities=31%  Similarity=0.367  Sum_probs=176.4

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      .++.+|||++++++ +++.+++++.|.|+|++|||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus        23 ~m~~~mkA~~~~~~-~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~  101 (363)
T 3uog_A           23 MMSKWMQEWSTETV-APHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKS  101 (363)
T ss_dssp             CCCSEEEEEEBSCT-TTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTT
T ss_pred             cCchhhEEEEEccC-CCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCC
Confidence            45678999999988 5678999999999999999999999999999999999987763 568999999999999999999


Q ss_pred             CCccCCCCEEEEeC-----------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          144 LTGRTVGDIIAYAG-----------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       144 v~~~~~Gd~V~~~~-----------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      |++|++||||++..                       ..+|+|+||+++|.+.++++|+++++++||++++++.|||+++
T Consensus       102 v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al  181 (363)
T 3uog_A          102 VTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFAL  181 (363)
T ss_dssp             CCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHH
Confidence            99999999999862                       1259999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .+.+++++|++|||+| +|++|++++|+|+.+|++|++++.+++|+++++++|+|+
T Consensus       182 ~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  236 (363)
T 3uog_A          182 VEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADH  236 (363)
T ss_dssp             TTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSE
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCE
Confidence            8888999999999999 799999999999999999999999999999999999973

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=4.7e-41  Score=301.78  Aligned_cols=189  Identities=27%  Similarity=0.313  Sum_probs=175.4

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      .++++|||+++++++.+  ++++++|.|+|++|||||||.+++||++|++++.|..+...+|.++|||++|+|+++|++|
T Consensus         4 ~~~~tmkA~v~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v   81 (378)
T 3uko_A            4 GQVITCKAAVAYEPNKP--LVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   81 (378)
T ss_dssp             TSCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTC
T ss_pred             ccceeeEEEEEecCCCc--cEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCC
Confidence            45778999999987765  8999999999999999999999999999999999987777789999999999999999999


Q ss_pred             CccCCCCEEEEeCCC------------------------------------------------CcceeeEEEecCCCeEE
Q 036416          145 TGRTVGDIIAYAGGA------------------------------------------------MGSYAEEQILPANKVVP  176 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~------------------------------------------------~G~~a~~~~v~~~~~~~  176 (256)
                      ++|++||||++....                                                .|+|+||+++|.+.+++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~  161 (378)
T 3uko_A           82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAK  161 (378)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEE
Confidence            999999999875421                                                16999999999999999


Q ss_pred             CCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|+++++++|+.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|+++++++|+|
T Consensus       162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~  240 (378)
T 3uko_A          162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN  240 (378)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999988889999999999996 9999999999999999 899999999999999999997


Q ss_pred             C
Q 036416          256 H  256 (256)
Q Consensus       256 ~  256 (256)
                      +
T Consensus       241 ~  241 (378)
T 3uko_A          241 E  241 (378)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=4e-41  Score=300.86  Aligned_cols=192  Identities=30%  Similarity=0.310  Sum_probs=177.0

Q ss_pred             CcccceEEEEEccc---CCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeC
Q 036416           65 TRTNMVKAIRVYEH---GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        65 ~~~~~~~a~~~~~~---~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG  141 (256)
                      ...++|||++++++   +.++.+++++.|.|+|++|||+|||.+++||++|++++.|..+...+|.++|||++|+|+++|
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence            34567999999988   667889999999999999999999999999999999999987766789999999999999999


Q ss_pred             CCCCccCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCC-----CCCEEEE
Q 036416          142 PGLTGRTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVE-----PGHTVLI  214 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-----~g~~VlI  214 (256)
                      ++|++|++||||+++..  .+|+|+||+++|.+.++++|+++++++||+++++++|||+++.+.++++     +|++|||
T Consensus        98 ~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV  177 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILI  177 (363)
T ss_dssp             TTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEE
T ss_pred             CCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEE
Confidence            99999999999998752  3699999999999999999999999999999999999999998888888     8999999


Q ss_pred             ecCCChHHHHHHHHHHH-cCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          215 QAAAGGVGSLLCQWANA-LGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       215 ~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +||+|++|++++|+|+. .|++|++++++++|+++++++|+|+
T Consensus       178 ~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~  220 (363)
T 4dvj_A          178 VGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH  220 (363)
T ss_dssp             ESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE
T ss_pred             ECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999998 4899999999999999999999974

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=3.1e-41  Score=298.87  Aligned_cols=189  Identities=25%  Similarity=0.352  Sum_probs=177.4

Q ss_pred             ccceEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCC
Q 036416           67 TNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +++||++++++++.| +.+++++.|.|+|++|||+|||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++|
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            357999999999887 67999999999999999999999999999999999998764 4689999999999999999999


Q ss_pred             CccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          145 TGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      ++|++||||+++.. +|+|+||+++|.+.++++|+++++++||++++.++|||+++.+.+++++|++|||+|++|++|++
T Consensus        82 ~~~~vGdrV~~~~~-~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~  160 (340)
T 3gms_A           82 SRELIGKRVLPLRG-EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHL  160 (340)
T ss_dssp             CGGGTTCEEEECSS-SCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHH
T ss_pred             CCCCCCCEEEecCC-CccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHH
Confidence            99999999998743 59999999999999999999999999999999999999999888999999999999988899999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++|+|+..|++|++++++++++++++++|+++
T Consensus       161 ~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~  192 (340)
T 3gms_A          161 FAQLSQILNFRLIAVTRNNKHTEELLRLGAAY  192 (340)
T ss_dssp             HHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcE
Confidence            99999999999999999999999999999873

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=6.6e-41  Score=294.53  Aligned_cols=187  Identities=32%  Similarity=0.394  Sum_probs=172.8

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC-----CCCCCCCCCCcccEEEEEEeCC
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-----KPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      ++||++++++++.++.+++++.|.|+|++|||||||.++|||++|++++.|..     ....+|.++|||++|+|+++|+
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            46999999999999999999999999999999999999999999999998831     1345799999999999999999


Q ss_pred             CCCccCCCCEEEEeCC---CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCC
Q 036416          143 GLTGRTVGDIIAYAGG---AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG  219 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~---~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g  219 (256)
                      +|++|++||||++...   .+|+|+||+++|.+.++++|+++++++||++++++.|||+++ +.+++++|++|||+||+|
T Consensus        85 ~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G  163 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAG  163 (321)
T ss_dssp             TCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTS
T ss_pred             CCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCc
Confidence            9999999999998863   369999999999999999999999999999999999999999 678999999999999899


Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++|++++|+|+.+|++|+++++ ++++++++++|+|+
T Consensus       164 ~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~~~lGa~~  199 (321)
T 3tqh_A          164 GVGHLAIQLAKQKGTTVITTAS-KRNHAFLKALGAEQ  199 (321)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEC-HHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHcCCEEEEEec-cchHHHHHHcCCCE
Confidence            9999999999999999999985 56799999999974

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=6.8e-41  Score=297.42  Aligned_cols=187  Identities=35%  Similarity=0.412  Sum_probs=175.1

Q ss_pred             cceEEEEEcccC---CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           68 NMVKAIRVYEHG---DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        68 ~~~~a~~~~~~~---~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      |+|||++++++|   .++.+++++.|.|+|++|||||||.+++||++|++.+.|.  ...+|.++|||++|+|+++|++|
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            469999999988   6788999999999999999999999999999999999887  34579999999999999999999


Q ss_pred             CccCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCC------CCCEEEEec
Q 036416          145 TGRTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVE------PGHTVLIQA  216 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~------~g~~VlI~g  216 (256)
                      ++|++||||++...  .+|+|+||+++|.+.++++|+++++++|+++++++.|||+++.+.++++      +|++|||+|
T Consensus        79 ~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~g  158 (346)
T 3fbg_A           79 TMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIIN  158 (346)
T ss_dssp             CSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEES
T ss_pred             CcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEc
Confidence            99999999998752  3699999999999999999999999999999999999999998888998      999999998


Q ss_pred             CCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          217 AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       217 a~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+|++|++++|+|+..|++|++++++++|+++++++|+|+
T Consensus       159 g~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  198 (346)
T 3fbg_A          159 GAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADI  198 (346)
T ss_dssp             TTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSE
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE
Confidence            8999999999999999999999999999999999999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.5e-40  Score=295.32  Aligned_cols=186  Identities=24%  Similarity=0.344  Sum_probs=171.5

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      +++||++++.+++.  .++++++|.|+|++|||||||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++
T Consensus         2 ~m~mka~~~~~~~~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~   79 (348)
T 3two_A            2 RVQSKGFAIFSKDE--HFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKK   79 (348)
T ss_dssp             CEEEEEEEBCSTTS--CCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             ceEEEEEEEccCCC--CCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCC
Confidence            36799999997654  4899999999999999999999999999999999998877778999999999999999999999


Q ss_pred             cCCCCEEEEeCC------------------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhc
Q 036416          147 RTVGDIIAYAGG------------------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIM  190 (256)
Q Consensus       147 ~~~Gd~V~~~~~------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~  190 (256)
                      |++||||++...                                    .+|+|+||+++|.+.++++|+++++++||.++
T Consensus        80 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  159 (348)
T 3two_A           80 FKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLL  159 (348)
T ss_dssp             CCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGG
T ss_pred             CCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhh
Confidence            999999976321                                    12999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++.|||+++.. .++++|++|||+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+|+
T Consensus       160 ~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  223 (348)
T 3two_A          160 CAGITTYSPLKF-SKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKH  223 (348)
T ss_dssp             THHHHHHHHHHH-TTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSE
T ss_pred             hhHHHHHHHHHh-cCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCe
Confidence            999999999976 49999999999995 99999999999999999999999999999999999974

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.8e-40  Score=293.27  Aligned_cols=189  Identities=32%  Similarity=0.546  Sum_probs=176.9

Q ss_pred             ccceEEEEEcccCCCCceEE-EEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCC
Q 036416           67 TNMVKAIRVYEHGDPEVLKW-EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +.+||++++++++.++.+++ ++.|.|+|++|||+|||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++|
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            45699999999888888999 899999999999999999999999999999997643 4579999999999999999999


Q ss_pred             CccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          145 TGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      ++|++||||++.....|+|+||+++|++.++++|+++++++||++++++.|||+++.+.+++++|++|||+|++|++|++
T Consensus       107 ~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~  186 (351)
T 1yb5_A          107 SAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLA  186 (351)
T ss_dssp             TTCCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHH
T ss_pred             CCCCCCCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHH
Confidence            99999999998875569999999999999999999999999999999999999999878899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|+|+..|++|++++++++++++++++|++
T Consensus       187 ~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          187 ACQIARAYGLKILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             HHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             HHHHHHHCCCEEEEEeCChhHHHHHHHcCCC
Confidence            9999999999999999999999999999986

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=1.8e-40  Score=295.83  Aligned_cols=191  Identities=30%  Similarity=0.456  Sum_probs=173.0

Q ss_pred             cccceEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCC
Q 036416           66 RTNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      ++.+||++++.+++.+ +.+++++.|.|+|++|||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus        23 m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  102 (357)
T 1zsy_A           23 MPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSN  102 (357)
T ss_dssp             CCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTT
T ss_pred             CchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCC
Confidence            4567999999988765 34888999999999999999999999999999999997654 347999999999999999999


Q ss_pred             CCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHH
Q 036416          144 LTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS  223 (256)
Q Consensus       144 v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~  223 (256)
                      |++|++||||++....+|+|+||+++|++.++++|+++++++||+++++++|||+++...+++++|++|||+||+|++|+
T Consensus       103 v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~  182 (357)
T 1zsy_A          103 VTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQ  182 (357)
T ss_dssp             CCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHH
T ss_pred             CCCCCCCCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHH
Confidence            99999999999886556999999999999999999999999999999999999999988889999999999998899999


Q ss_pred             HHHHHHHHcCCeEEEEeCCh----hhHHHHHhCCCCC
Q 036416          224 LLCQWANALGATVIGTVSTK----EKAAQAKDDGCHH  256 (256)
Q Consensus       224 ~ai~la~~~ga~Vi~~~~~~----~~~~~~~~~Ga~~  256 (256)
                      +++|+|+.+|++++++++++    +++++++++|+|+
T Consensus       183 ~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~  219 (357)
T 1zsy_A          183 AVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEH  219 (357)
T ss_dssp             HHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcE
Confidence            99999999999988887653    3578899999974

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3e-40  Score=294.13  Aligned_cols=192  Identities=30%  Similarity=0.378  Sum_probs=175.0

Q ss_pred             cCCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416           63 TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        63 ~~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG  141 (256)
                      ....+++||++++++++.++.+++++.|.|+|+++||+|||.++|||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        16 ~~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG   95 (354)
T 2j8z_A           16 ENLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELG   95 (354)
T ss_dssp             -----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEEC
T ss_pred             cccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEEC
Confidence            345677899999999888888999999999999999999999999999999999997654 3478999999999999999


Q ss_pred             CCC-CccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCCh
Q 036416          142 PGL-TGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG  220 (256)
Q Consensus       142 ~~v-~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~  220 (256)
                      ++| ++|++||||+++.. .|+|+||+++|++.++++|+++++++||+++.++.|||+++.+.+++++|++|||+||+|+
T Consensus        96 ~~v~~~~~vGdrV~~~~~-~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~gg  174 (354)
T 2j8z_A           96 PGCQGHWKIGDTAMALLP-GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSG  174 (354)
T ss_dssp             SCC--CCCTTCEEEEECS-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSH
T ss_pred             CCcCCCCCCCCEEEEecC-CCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccH
Confidence            999 99999999998754 4999999999999999999999999999999999999999987789999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++++|+|+..|++|++++++++++++++++|++
T Consensus       175 iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~  209 (354)
T 2j8z_A          175 VGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA  209 (354)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999986

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.5e-40  Score=293.54  Aligned_cols=186  Identities=31%  Similarity=0.350  Sum_probs=172.8

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC--CCCCCCCCcccEEEEEEeCCCC
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP--AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +++||++++++++.+  +++++.|.|+|++|||||||.+++||++|++++.|..+.  ..+|.++|||++|+|+++|++|
T Consensus         5 ~~~mka~~~~~~~~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v   82 (343)
T 3gaz_A            5 TPTMIAAVVEEANGP--FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEV   82 (343)
T ss_dssp             -CEEEEEEECSTTCC--EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTC
T ss_pred             chhheEEEEecCCCc--eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCC
Confidence            567999999988776  999999999999999999999999999999999987532  4589999999999999999999


Q ss_pred             CccCCCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCCh
Q 036416          145 TGRTVGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG  220 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~  220 (256)
                      ++|++||||+++..    .+|+|+||+++|.+.++++|+++++++|+.+++++.|||+++.+.+++++|++|||+||+|+
T Consensus        83 ~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~  162 (343)
T 3gaz_A           83 DSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGG  162 (343)
T ss_dssp             CSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSH
T ss_pred             CCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCH
Confidence            99999999998753    36999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++++|+|+..|++|+++ .+++++++++++|++
T Consensus       163 iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~  196 (343)
T 3gaz_A          163 VGHVAIQIALARGARVFAT-ARGSDLEYVRDLGAT  196 (343)
T ss_dssp             HHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCC
Confidence            9999999999999999999 788999999999986

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=8.3e-40  Score=289.61  Aligned_cols=184  Identities=31%  Similarity=0.469  Sum_probs=170.0

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      +|||+++++++.+  +++++.|.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         2 ~MkA~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~   79 (340)
T 3s2e_A            2 MMKAAVVRAFGAP--LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRV   79 (340)
T ss_dssp             EEEEEEBCSTTSC--CEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSC
T ss_pred             ceEEEEEecCCCC--CEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcC
Confidence            5999999987765  899999999999999999999999999999999998765 5689999999999999999999999


Q ss_pred             CCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          148 TVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       148 ~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      ++||||.+..                           ..+|+|+||+++|++.++++|+++++++|+.+++.+.|||+++
T Consensus        80 ~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l  159 (340)
T 3s2e_A           80 KEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGL  159 (340)
T ss_dssp             CTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHH
Confidence            9999995321                           1359999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      . .+++++|++|||+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+|+
T Consensus       160 ~-~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  213 (340)
T 3s2e_A          160 K-VTDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEV  213 (340)
T ss_dssp             H-TTTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             H-HcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            4 569999999999995 99999999999999999999999999999999999974

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=7.1e-40  Score=293.47  Aligned_cols=188  Identities=24%  Similarity=0.289  Sum_probs=172.8

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .|++|||+++.+++.+  +++++.|.|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~p~~mkA~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            3 EVIKCKAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CccceEEEEEecCCCC--cEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCC
Confidence            4678999999977644  88899999999999999999999999999999999876556899999999999999999999


Q ss_pred             ccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECC
Q 036416          146 GRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       146 ~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip  178 (256)
                      +|++||||++...                                               ..|+|+||+++|++.++++|
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            9999999987531                                               14899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++++||.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  238 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE  238 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999999988888999999999999 59999999999999999 8999999999999999999873

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.6e-40  Score=288.67  Aligned_cols=187  Identities=44%  Similarity=0.736  Sum_probs=173.6

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +|||+++++++.++.+++++.|.|+|++|||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK   80 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence            38999999988888899999999999999999999999999999999999776555899999999999999999999999


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                      +||||......+|+|+||+++|.+.++++|+++++++||+++.++.|||+++.+.+++++|++|||+||+|++|++++|+
T Consensus        81 ~GdrV~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~  160 (327)
T 1qor_A           81 AGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW  160 (327)
T ss_dssp             TTCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHH
T ss_pred             CCCEEEECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            99999433133599999999999999999999999999999999999999998778999999999999999999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++..|++|+++++++++++.++++|++
T Consensus       161 a~~~G~~V~~~~~~~~~~~~~~~~g~~  187 (327)
T 1qor_A          161 AKALGAKLIGTVGTAQKAQSALKAGAW  187 (327)
T ss_dssp             HHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            999999999999999999999999986

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.2e-39  Score=292.05  Aligned_cols=186  Identities=26%  Similarity=0.283  Sum_probs=171.0

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .+++|||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|+
T Consensus         6 ~p~~mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A            6 KDITCKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             SCEEEEEEEBSSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             CcceeEEEEEEcCCCC--eeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCCC
Confidence            4678999999977644  88899999999999999999999999999999999766 45799999999999999999999


Q ss_pred             ccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECC
Q 036416          146 GRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       146 ~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip  178 (256)
                      +|++||||++...                                               ..|+|+||+++|++.++++|
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  162 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  162 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECC
Confidence            9999999987531                                               13899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++++ ||.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus       163 ~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  239 (373)
T 1p0f_A          163 PKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE  239 (373)
T ss_dssp             TTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            999999 9999999999999998888999999999999 59999999999999999 8999999999999999999974

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.8e-40  Score=292.38  Aligned_cols=187  Identities=28%  Similarity=0.405  Sum_probs=168.7

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCC-CCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCC
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +++||++++++++.+  +++++.|.|+ |++|||||||.+++||++|++++.|.++   ...+|.++|||++|+|+++|+
T Consensus        13 ~~~mka~~~~~~g~~--l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~   90 (359)
T 1h2b_A           13 VERLKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAE   90 (359)
T ss_dssp             ----CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECT
T ss_pred             hhhceEEEEecCCCC--cEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECC
Confidence            456999999987643  8889999999 9999999999999999999999999765   345799999999999999999


Q ss_pred             CCCccCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHh---hhchhH
Q 036416          143 GLTGRTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAA---SIMLKG  193 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa---~l~~~~  193 (256)
                      +|++|++||||++...                          .+|+|+||+++|.+.++++|+++++++|+   .+++++
T Consensus        91 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~  170 (359)
T 1h2b_A           91 GVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAG  170 (359)
T ss_dssp             TCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHH
T ss_pred             CCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhH
Confidence            9999999999977531                          35999999999999999999999999998   788999


Q ss_pred             HHHHHHHHHH-cCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCCC
Q 036416          194 MTAQFLLRRC-FKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       194 ~ta~~~l~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .|||+++... +++++|++|||+|+ |++|++++|+|+.+ |++|++++++++|+++++++|+|+
T Consensus       171 ~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  234 (359)
T 1h2b_A          171 ITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH  234 (359)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCE
Confidence            9999999876 79999999999997 99999999999999 999999999999999999999974

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.4e-39  Score=291.90  Aligned_cols=187  Identities=24%  Similarity=0.253  Sum_probs=171.1

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .|++||++++.+++.+  +++++.|.|+|++|||||||.+++||++|++++.|. +...+|.++|||++|+|+++|++|+
T Consensus         5 ~p~~mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            5 KVIKCKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CChheeEEEEecCCCC--eEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            4677999999977644  888999999999999999999999999999999886 4455899999999999999999999


Q ss_pred             ccCCCCEEEEeCC---------------------------------------------------CCcceeeEEEecCCCe
Q 036416          146 GRTVGDIIAYAGG---------------------------------------------------AMGSYAEEQILPANKV  174 (256)
Q Consensus       146 ~~~~Gd~V~~~~~---------------------------------------------------~~G~~a~~~~v~~~~~  174 (256)
                      +|++||||++...                                                   ..|+|+||+++|++.+
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccE
Confidence            9999999987521                                                   1389999999999999


Q ss_pred             EECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCC
Q 036416          175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +++|+++++++|+.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG  240 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG  240 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence            999999999999999999999999988888999999999999 59999999999999999 8999999999999999999


Q ss_pred             CCC
Q 036416          254 CHH  256 (256)
Q Consensus       254 a~~  256 (256)
                      +|+
T Consensus       241 a~~  243 (376)
T 1e3i_A          241 ATD  243 (376)
T ss_dssp             CSE
T ss_pred             CcE
Confidence            974

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.7e-40  Score=290.28  Aligned_cols=186  Identities=31%  Similarity=0.465  Sum_probs=172.9

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ++|||+++++++.++.+++++.+.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            6799999999998888999999999999999999999999999999999998654 568999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHH
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC  226 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai  226 (256)
                      |++||||+++.. +|+|+||+++|.+.++++|+++++++||++++++.|||+++.+.+++++|++|||+|++|++|++++
T Consensus        82 ~~~GdrV~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~  160 (349)
T 4a27_A           82 YEIGDRVMAFVN-YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVA  160 (349)
T ss_dssp             CCTTCEEEEECS-SCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHH
T ss_pred             CCCCCEEEEecC-CCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHH
Confidence            999999998764 5999999999999999999999999999999999999999988889999999999998899999999


Q ss_pred             HHHHHcC-CeEEEEeCChhhHHHHHhCCCCC
Q 036416          227 QWANALG-ATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       227 ~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+|+.+| ++|++++ +++|+++++ +|+++
T Consensus       161 qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~  189 (349)
T 4a27_A          161 QLCSTVPNVTVFGTA-STFKHEAIK-DSVTH  189 (349)
T ss_dssp             HHHTTSTTCEEEEEE-CGGGHHHHG-GGSSE
T ss_pred             HHHHHcCCcEEEEeC-CHHHHHHHH-cCCcE
Confidence            9999995 5888888 567888888 99873

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2.7e-39  Score=289.71  Aligned_cols=186  Identities=20%  Similarity=0.176  Sum_probs=166.0

Q ss_pred             CCcccceEEEEEcccCCCCceEEE-EeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416           64 RTRTNMVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        64 ~~~~~~~~a~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +..+.+||+++++++   ..++++ +.|.|+|++|||||||.+++||++|++++.|.   ..+|.++|||++|+|+++|+
T Consensus         6 m~~p~~mkA~v~~~~---~~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~   79 (371)
T 3gqv_A            6 FIPPPQQTALTVNDH---DEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGS   79 (371)
T ss_dssp             CCCCSCEEEEEECTT---SCEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECT
T ss_pred             CCCchhceeEEEcCC---CceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCC
Confidence            456778999999955   459998 99999999999999999999999999988773   23689999999999999999


Q ss_pred             CCCccCCCCEEEEeCC-------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH-cCC--------
Q 036416          143 GLTGRTVGDIIAYAGG-------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC-FKV--------  206 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~-------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~-~~~--------  206 (256)
                      +|++|++||||++...       .+|+|+||+++|.+.++++|+++++++|+.+++++.|||+++.+. .++        
T Consensus        80 ~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~  159 (371)
T 3gqv_A           80 DVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQP  159 (371)
T ss_dssp             TCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSC
T ss_pred             CCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccc
Confidence            9999999999998763       369999999999999999999999999999999999999999877 553        


Q ss_pred             ---CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          207 ---EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       207 ---~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                         ++|++|||+||+|++|++++|+|+.+|++|++++ +++|+++++++|+|+
T Consensus       160 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~  211 (371)
T 3gqv_A          160 PTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEE  211 (371)
T ss_dssp             CCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSE
T ss_pred             cccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcE
Confidence               8999999999889999999999999999999997 689999999999974

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.6e-39  Score=289.95  Aligned_cols=187  Identities=25%  Similarity=0.295  Sum_probs=171.7

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .+++|||+++++++.+  +++++.|.|+|++|||||||.+++||++|++++.|..+.. +|.++|||++|+|+++|++|+
T Consensus         5 ~~~~mkA~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            5 KVIKCKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTCC
T ss_pred             CceeEEEEEEecCCCc--eEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCCC
Confidence            3567999999977644  8889999999999999999999999999999999976544 799999999999999999999


Q ss_pred             ccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECC
Q 036416          146 GRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       146 ~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip  178 (256)
                      +|++||||++...                                               ..|+|+||+++|++.++++|
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence            9999999987531                                               13899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++++|+.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++++++|+++++++|+|+
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  239 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE  239 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCce
Confidence            99999999999999999999998888999999999999 59999999999999999 8999999999999999999873

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-39  Score=289.93  Aligned_cols=187  Identities=25%  Similarity=0.287  Sum_probs=171.6

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhH-hHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY-YRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      .+++||++++.+++.+  +++++.|.|+|+++||||||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++|
T Consensus         5 ~~~~mka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~V   81 (374)
T 1cdo_A            5 KVIKCKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGV   81 (374)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTC
T ss_pred             CcceeEEEEEecCCCC--eEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCCC
Confidence            4567999999977644  8889999999999999999999999999999 8988766 4579999999999999999999


Q ss_pred             CccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEEC
Q 036416          145 TGRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPV  177 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~i  177 (256)
                      ++|++||||++...                                               ..|+|+||+++|++.++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~  161 (374)
T 1cdo_A           82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (374)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             ccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEEC
Confidence            99999999987531                                               1389999999999999999


Q ss_pred             CCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          178 PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+++++++||.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus       162 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  240 (374)
T 1cdo_A          162 DPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD  240 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCce
Confidence            999999999999999999999988888999999999999 59999999999999999 8999999999999999999974

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.5e-39  Score=290.21  Aligned_cols=187  Identities=28%  Similarity=0.376  Sum_probs=170.2

Q ss_pred             cccceEEEEEcccCCCCceEEEE--eeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWED--VEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      .+++|||+++++++.+  +++++  .|.|+|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++|++
T Consensus         3 ~p~~mka~~~~~~~~~--l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~   80 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDW--KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPK   80 (360)
T ss_dssp             TTTCEEEEEECCSSST--TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTT
T ss_pred             CChheEEEEEecCCCC--eeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCC
Confidence            3567999999987644  67788  9999999999999999999999999999997765567999999999999999999


Q ss_pred             CC-ccCCCCEEEEe---------------------------------C-CCCcceeeEEEecCCCeEECCCCCCHHHHhh
Q 036416          144 LT-GRTVGDIIAYA---------------------------------G-GAMGSYAEEQILPANKVVPVPSSIDPVIAAS  188 (256)
Q Consensus       144 v~-~~~~Gd~V~~~---------------------------------~-~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~  188 (256)
                      |+ +|++||||++.                                 . ..+|+|+||+++|++.++++|+++++++||.
T Consensus        81 v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  160 (360)
T 1piw_A           81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAP  160 (360)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGG
T ss_pred             CCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhh
Confidence            99 99999999542                                 1 1359999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++.+.|||+++.. +++++|++|||+|+ |++|++++|+|+.+|++|++++++++|+++++++|+++
T Consensus       161 l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~  226 (360)
T 1piw_A          161 LLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH  226 (360)
T ss_dssp             GGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE
T ss_pred             hhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            99999999999976 79999999999997 99999999999999999999999999999999999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.1e-39  Score=288.14  Aligned_cols=186  Identities=48%  Similarity=0.826  Sum_probs=170.0

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC--CC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--KP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++++++.++.+++++.|.|+|++|||||||.++|||++|++++.|.+  +. ..+|.++|||++|+|+++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999998888889999999999999999999999999999999999866  22 357999999999999999999999


Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHH--HhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI--AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      |++||||+.....+|+|+||+++|.+.++++|+++++++  |++++.++.|||+++.+.+++++|++|||+||+|++|++
T Consensus        82 ~~~GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~  161 (333)
T 1wly_A           82 FTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHI  161 (333)
T ss_dssp             CCTTCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHH
T ss_pred             CCCCCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHH
Confidence            999999987653259999999999999999999999999  999999999999999877899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++|+++..|++|+++++++++++.++++|++
T Consensus       162 ~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          162 MVPWARHLGATVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             HHHHHHHTTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999986

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.5e-39  Score=285.96  Aligned_cols=185  Identities=22%  Similarity=0.294  Sum_probs=169.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++++++.|+.+++++.|.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            89999999999888999999999999999999999999999999999998764 4689999999999999998  68899


Q ss_pred             CCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH--HcCCCCCC-EEEEecCCCh
Q 036416          149 VGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR--CFKVEPGH-TVLIQAAAGG  220 (256)
Q Consensus       149 ~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~-~VlI~ga~g~  220 (256)
                      +||||++..     ..+|+|+||+++|.+.++++|+++++++||++++.+.|||++++.  ..++++++ +|||+|++|+
T Consensus        79 vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~  158 (324)
T 3nx4_A           79 AGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGG  158 (324)
T ss_dssp             TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSH
T ss_pred             CCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcH
Confidence            999999864     236999999999999999999999999999999999999998863  34567643 4999998899


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++++|+|+.+|++|++++.+++|+++++++|+|+
T Consensus       159 vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          159 VGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999999999999999999999974

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.1e-39  Score=291.23  Aligned_cols=189  Identities=22%  Similarity=0.337  Sum_probs=170.7

Q ss_pred             cceEEEEEcccCCC-CceEEEEeeCCCCC--CCeEEEEEeEEeeChhhhHhHhCCCCC-CCCC---------CCCCcccE
Q 036416           68 NMVKAIRVYEHGDP-EVLKWEDVEIGEPG--EGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMP---------FTPGMEAV  134 (256)
Q Consensus        68 ~~~~a~~~~~~~~~-~~l~~~~~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p---------~~lG~e~~  134 (256)
                      ++||++++++++.+ +.+++++.|.|+|+  +|||+|||.++|||++|++++.|.++. ..+|         .++|||++
T Consensus         2 ~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~   81 (364)
T 1gu7_A            2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (364)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeE
Confidence            56999999988765 45888999988877  999999999999999999999997654 3456         89999999


Q ss_pred             EEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCC-----------CCCHHHHhhhchhHHHHHHHHHHH
Q 036416          135 GEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPS-----------SIDPVIAASIMLKGMTAQFLLRRC  203 (256)
Q Consensus       135 G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~-----------~~~~~~aa~l~~~~~ta~~~l~~~  203 (256)
                      |+|+++|++|++|++||||++.....|+|+||+++|.+.++++|+           ++++++||++++++.|||+++...
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~  161 (364)
T 1gu7_A           82 FEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHY  161 (364)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSS
T ss_pred             EEEEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHh
Confidence            999999999999999999998865569999999999999999998           899999999999999999999887


Q ss_pred             cCCCCC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh----HHHHHhCCCCC
Q 036416          204 FKVEPG-HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK----AAQAKDDGCHH  256 (256)
Q Consensus       204 ~~~~~g-~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~----~~~~~~~Ga~~  256 (256)
                      +++++| ++|||+||+|++|++++|+|+.+|++|+++++++++    +++++++|+|+
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~  219 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ  219 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeE
Confidence            799999 999999988999999999999999999999876554    67889999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=289.02  Aligned_cols=191  Identities=25%  Similarity=0.274  Sum_probs=173.2

Q ss_pred             CcccceEEEEEcccCCCCceEE-EEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCC---------------CCCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKW-EDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYK---------------PAKMPF  127 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~-~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~  127 (256)
                      ..+++||++++++++.++.+++ ++.|.|+| ++|||||||.++|||++|++++.|..+               ...+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            3466799999999988888999 99999985 999999999999999999999988531               123789


Q ss_pred             CCCcccEEEEEEeCCCCCccCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC
Q 036416          128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK  205 (256)
Q Consensus       128 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~  205 (256)
                      ++|||++|+|+++|++|++|++||||++...  ..|+|+||+++|++.++++|+++++++||++++.++|||+++.+.++
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~  176 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGG  176 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTC
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999998763  25999999999999999999999999999999999999999987778


Q ss_pred             ----CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          206 ----VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       206 ----~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                          +++|++|||+||+|++|++++|+|+..|++|++++ +++++++++++|+|+
T Consensus       177 ~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~  230 (375)
T 2vn8_A          177 LNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADD  230 (375)
T ss_dssp             CCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSE
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCE
Confidence                99999999999999999999999999999999998 578899999999873

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.4e-39  Score=288.90  Aligned_cols=186  Identities=24%  Similarity=0.272  Sum_probs=170.2

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      +++||++++++++.+  ++++++|.|+|+++||||||.++|||++|++++.|.++ ..+|.++|||++|+|+++|++|++
T Consensus         4 ~~~mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~   80 (371)
T 1f8f_A            4 LKDIIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTE   80 (371)
T ss_dssp             CEEEEEEEBCSTTCC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             cccceEEEEcCCCCC--eEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCC
Confidence            456999999977644  88899999999999999999999999999999999765 347999999999999999999999


Q ss_pred             cCCCCEEEEeC------------------------------------------------CCCcceeeEEEecCCCeEECC
Q 036416          147 RTVGDIIAYAG------------------------------------------------GAMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       147 ~~~Gd~V~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~ip  178 (256)
                      |++||||++..                                                ...|+|+||+++|.+.++++|
T Consensus        81 ~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (371)
T 1f8f_A           81 LQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  160 (371)
T ss_dssp             CCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             CCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence            99999998731                                                014899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++++|+.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus       161 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  238 (371)
T 1f8f_A          161 KDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH  238 (371)
T ss_dssp             TTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCE
Confidence            99999999999999999999998778999999999999 59999999999999999 6999999999999999999873

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=6.1e-39  Score=287.41  Aligned_cols=186  Identities=27%  Similarity=0.333  Sum_probs=168.2

Q ss_pred             CCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416           64 RTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        64 ~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~  143 (256)
                      ...+++|||+++++++   .++++++|.|+|++|||+|||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++
T Consensus        18 ~~~p~~mkA~v~~~~~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~   93 (370)
T 4ej6_A           18 LYFQSMMKAVRLESVG---NISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSA   93 (370)
T ss_dssp             ---CCEEEEEEEEETT---EEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTT
T ss_pred             cccchheEEEEEecCC---ceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCC
Confidence            3456789999999654   599999999999999999999999999999999999874 347999999999999999999


Q ss_pred             CCccCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          144 LTGRTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       144 v~~~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      |++|++||||++..                          ..+|+|+||+++|.+.++++|+++++++|| ++.++.|||
T Consensus        94 v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~  172 (370)
T 4ej6_A           94 VRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCL  172 (370)
T ss_dssp             CCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHH
T ss_pred             CCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHH
Confidence            99999999998732                          235999999999999999999999999987 777999999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++ +.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       173 ~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  230 (370)
T 4ej6_A          173 HGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA  230 (370)
T ss_dssp             HHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE
T ss_pred             HHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE
Confidence            999 6679999999999996 9999999999999999 8999999999999999999973

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.3e-39  Score=289.38  Aligned_cols=191  Identities=26%  Similarity=0.335  Sum_probs=170.1

Q ss_pred             CCcccceEEEEEc--cc-CCCCceEEEEe---------eCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCC
Q 036416           64 RTRTNMVKAIRVY--EH-GDPEVLKWEDV---------EIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPG  130 (256)
Q Consensus        64 ~~~~~~~~a~~~~--~~-~~~~~l~~~~~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG  130 (256)
                      +..+.+|||++++  ++ +.++.+++++.         |.|+|++|||||||.+++||++|++++.|.++. ..+|.++|
T Consensus         5 m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G   84 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAG   84 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCC
T ss_pred             CCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCcc
Confidence            3457789999999  66 35677888888         999999999999999999999999999998754 45899999


Q ss_pred             cccEEEEEEeCCCC-CccCCCCEEEEeC--CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCC
Q 036416          131 MEAVGEVVAVGPGL-TGRTVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVE  207 (256)
Q Consensus       131 ~e~~G~V~~vG~~v-~~~~~Gd~V~~~~--~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  207 (256)
                      ||++|+|+++|++| ++|++||||++..  ..+|+|+||+++|.+.++++|+++++++||++++.++|||+++.. ++ +
T Consensus        85 ~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~-~~-~  162 (349)
T 3pi7_A           85 FEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI-VK-Q  162 (349)
T ss_dssp             SEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHH-HH-H
T ss_pred             ceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHH-Hh-h
Confidence            99999999999999 9999999999875  236999999999999999999999999999999999999966644 45 6


Q ss_pred             CC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          208 PG-HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       208 ~g-~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +| ++|+|+||+|++|++++|+|+..|++|++++++++|+++++++|+|+
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~  212 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAH  212 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCE
Confidence            66 79999999999999999999999999999999999999999999873

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6.6e-39  Score=284.24  Aligned_cols=186  Identities=38%  Similarity=0.563  Sum_probs=172.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++++++.++.+++++.+.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            79999998887777999999999999999999999999999999999997654 35799999999999999999999999


Q ss_pred             CCCEEEEe--------------------------CCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          149 VGDIIAYA--------------------------GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       149 ~Gd~V~~~--------------------------~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      +||||++.                          ...+|+|+||+++|.+.++++|+++++++|++++.++.|||+++..
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~  160 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVD  160 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHH
Confidence            99999842                          1225999999999999999999999999999999999999999987


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+++++|++|||+|++|++|++++|+|+..|++|++++++++++++++++|++
T Consensus       161 ~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~  213 (343)
T 2eih_A          161 KLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD  213 (343)
T ss_dssp             TSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC
Confidence            67999999999999889999999999999999999999999999999999986

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-38  Score=280.56  Aligned_cols=187  Identities=27%  Similarity=0.413  Sum_probs=170.6

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      .+.+||++++++++.+  +++++.|.|+|++|||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++|
T Consensus         2 ~p~~mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v   79 (347)
T 2hcy_A            2 IPETQKGVIFYESHGK--LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENV   79 (347)
T ss_dssp             CCSEEEEEEESSTTCC--CEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTC
T ss_pred             CCcccEEEEEeCCCCC--CEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCC
Confidence            3567999999987643  888999999999999999999999999999999997653 4579999999999999999999


Q ss_pred             CccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          145 TGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       145 ~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      ++|++||||++..                           ..+|+|+||+++|++.++++|+++++++|+.+++.+.|||
T Consensus        80 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~  159 (347)
T 2hcy_A           80 KGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVY  159 (347)
T ss_dssp             CSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHH
T ss_pred             CCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHH
Confidence            9999999998631                           1259999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++... ++++|++|||+|++|++|++++|+++..|++|+++++++++.+.++++|++
T Consensus       160 ~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~  216 (347)
T 2hcy_A          160 KALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE  216 (347)
T ss_dssp             HHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC
T ss_pred             HHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            999764 899999999999889999999999999999999999999999999999986

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.9e-38  Score=281.40  Aligned_cols=183  Identities=33%  Similarity=0.466  Sum_probs=168.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC--CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP--AKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      |||+++++++.+  +++++.|.|+|++|||||||.+++||++|++++.|.++.  ..+|.++|||++|+|+++|++|++|
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   78 (345)
T 3jv7_A            1 MKAVQYTEIGSE--PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGF   78 (345)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSC
T ss_pred             CeEEEEcCCCCc--eEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCC
Confidence            899999988765  889999999999999999999999999999999997642  4579999999999999999999999


Q ss_pred             CCCCEEEEeCC-------------------------------CCcceeeEEEec-CCCeEECCCCCCHHHHhhhchhHHH
Q 036416          148 TVGDIIAYAGG-------------------------------AMGSYAEEQILP-ANKVVPVPSSIDPVIAASIMLKGMT  195 (256)
Q Consensus       148 ~~Gd~V~~~~~-------------------------------~~G~~a~~~~v~-~~~~~~ip~~~~~~~aa~l~~~~~t  195 (256)
                      ++||||++...                               .+|+|+||+++| .+.++++|+ +++++||.+++++.|
T Consensus        79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~t  157 (345)
T 3jv7_A           79 GVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLT  157 (345)
T ss_dssp             CTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHH
T ss_pred             CCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHH
Confidence            99999998431                               369999999999 899999999 999999999999999


Q ss_pred             HHHHHHH-HcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCCC
Q 036416          196 AQFLLRR-CFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       196 a~~~l~~-~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ||+++.. ..++++|++|||+|+ |++|++++|+|+.+ |++|++++.+++|+++++++|+|+
T Consensus       158 a~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~  219 (345)
T 3jv7_A          158 PYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADA  219 (345)
T ss_dssp             HHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            9999987 458999999999995 99999999999999 679999999999999999999974

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=3.7e-38  Score=279.05  Aligned_cols=182  Identities=35%  Similarity=0.469  Sum_probs=167.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++++++.+  +++++.|.|+|++|||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~   78 (339)
T 1rjw_A            1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (339)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEcCCCCC--cEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCC
Confidence            799999977643  888999999999999999999999999999999997653 45799999999999999999999999


Q ss_pred             CCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416          149 VGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR  201 (256)
Q Consensus       149 ~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  201 (256)
                      +||||++..                           ..+|+|+||+++|.+.++++|+++++++||.+++.+.|||+++.
T Consensus        79 vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~  158 (339)
T 1rjw_A           79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK  158 (339)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            999998631                           13599999999999999999999999999999999999999997


Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .. ++++|++|||+|+ |++|++++|+|+.+|++|++++++++++++++++|++
T Consensus       159 ~~-~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~  210 (339)
T 1rjw_A          159 VT-GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD  210 (339)
T ss_dssp             HH-TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             hc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence            65 8999999999997 9999999999999999999999999999999999986

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-38  Score=283.56  Aligned_cols=187  Identities=25%  Similarity=0.409  Sum_probs=167.7

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      ..++|+++.+.+++  +.++++++|.|+|++|||||||.++|||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus        19 ~~~~~~a~~~~~~~--~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~   96 (369)
T 1uuf_A           19 AGLKIKAVGAYSAK--QPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVE   96 (369)
T ss_dssp             ----CEEEEBSSTT--SCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             cCceEEEEEEcCCC--CCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCC
Confidence            45669999987543  4589999999999999999999999999999999999766556799999999999999999999


Q ss_pred             ccCCCCEEEEeC-----------------------------------CCCcceeeEEEecCCCeEECCCC-CCHHHHhhh
Q 036416          146 GRTVGDIIAYAG-----------------------------------GAMGSYAEEQILPANKVVPVPSS-IDPVIAASI  189 (256)
Q Consensus       146 ~~~~Gd~V~~~~-----------------------------------~~~G~~a~~~~v~~~~~~~ip~~-~~~~~aa~l  189 (256)
                      +|++||||++.+                                   ...|+|+||+++|.+.++++|++ +++++||++
T Consensus        97 ~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l  176 (369)
T 1uuf_A           97 KYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPL  176 (369)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGG
T ss_pred             CCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhh
Confidence            999999998631                                   12599999999999999999999 999999999


Q ss_pred             chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++.|||+++.. +++++|++|||+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+|+
T Consensus       177 ~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~  241 (369)
T 1uuf_A          177 LCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE  241 (369)
T ss_dssp             GTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE
T ss_pred             hhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcE
Confidence            9999999999976 58999999999995 99999999999999999999999999999999999873

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.5e-38  Score=282.59  Aligned_cols=187  Identities=36%  Similarity=0.582  Sum_probs=171.0

Q ss_pred             cccceEEEEEcccCCC--CceEE-EEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416           66 RTNMVKAIRVYEHGDP--EVLKW-EDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~--~~l~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG  141 (256)
                      .+.+|||+++++++.+  +.+++ ++.|.|+|++|||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            3456999999988754  56899 999999999999999999999999999999997643 4579999999999999999


Q ss_pred             CCCC-ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCCh
Q 036416          142 PGLT-GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG  220 (256)
Q Consensus       142 ~~v~-~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~  220 (256)
                      ++|+ +|++||||++...  |+|+||+++|.+.++++|+. + .++++++..++|||+++.+.+++++|++|||+||+|+
T Consensus       100 ~~V~~~~~vGdrV~~~~~--G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~  175 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMAP--GSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGG  175 (362)
T ss_dssp             TTGGGTCCTTCEEEEECS--CCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBT
T ss_pred             CCccCCCCCCCEEEEccC--CcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcH
Confidence            9999 9999999998865  99999999999999999996 4 4677888999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++++|+|+..|++|++++++++++++++++|+++
T Consensus       176 iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~  211 (362)
T 2c0c_A          176 TGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR  211 (362)
T ss_dssp             THHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcE
Confidence            999999999999999999999999999999999873

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=4.8e-38  Score=280.23  Aligned_cols=187  Identities=27%  Similarity=0.381  Sum_probs=168.3

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .+++|+++...+  .++.++++++|.|+|++|||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++|+
T Consensus         6 ~~m~~~a~~~~~--~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   83 (357)
T 2cf5_A            6 AERKTTGWAARD--PSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_dssp             CCCEEEEEEECS--TTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCC
T ss_pred             CcceeEEEEEcc--CCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCC
Confidence            346677777764  456799999999999999999999999999999999998766556799999999999999999999


Q ss_pred             ccCCCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhch
Q 036416          146 GRTVGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIML  191 (256)
Q Consensus       146 ~~~~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~  191 (256)
                      +|++||||++..                                  ..+|+|+||+++|.+.++++|+++++++||.+++
T Consensus        84 ~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~  163 (357)
T 2cf5_A           84 KFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLC  163 (357)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGT
T ss_pred             CCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhh
Confidence            999999998531                                  1369999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCCCC
Q 036416          192 KGMTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGCHH  256 (256)
Q Consensus       192 ~~~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga~~  256 (256)
                      .+.|||+++.. .+++ +|++|||+| +|++|++++|+|+.+|++|++++.+++|+++++ ++|+|+
T Consensus       164 ~~~ta~~~l~~-~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~  228 (357)
T 2cf5_A          164 AGVTVYSPLSH-FGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADD  228 (357)
T ss_dssp             HHHHHHHHHHH-TSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSC
T ss_pred             hHHHHHHHHHh-cCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCce
Confidence            99999999875 5888 999999999 599999999999999999999999999999988 999974

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.3e-38  Score=279.88  Aligned_cols=183  Identities=27%  Similarity=0.283  Sum_probs=163.3

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh-CCCC--CCCCCCCCCcccEEEEEEeCCCC
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-GVYK--PAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ++||+++++++   +.+++++.|.|+|+++||||||.+++||++|++++. +..+  ...+|.++|||++|+|+++|++|
T Consensus         3 ~~mka~~~~~~---~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v   79 (352)
T 1e3j_A            3 SDNLSAVLYKQ---NDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV   79 (352)
T ss_dssp             -CCEEEEEEET---TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTC
T ss_pred             ccCEEEEEEcC---CcEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCC
Confidence            46999999964   468999999999999999999999999999999887 4332  13478999999999999999999


Q ss_pred             CccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          145 TGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       145 ~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      ++|++||||++..                           ..+|+|+||+++|.+.++++|+++++++|+.+ .++.|||
T Consensus        80 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~  158 (352)
T 1e3j_A           80 KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGV  158 (352)
T ss_dssp             CSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHH
T ss_pred             CCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHH
Confidence            9999999998752                           13599999999999999999999999999865 5788999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++ +.+++++|++|||+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+++
T Consensus       159 ~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  215 (352)
T 1e3j_A          159 HAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV  215 (352)
T ss_dssp             HHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCE
Confidence            999 5679999999999995 99999999999999999999999999999999999873

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.5e-38  Score=277.54  Aligned_cols=183  Identities=29%  Similarity=0.368  Sum_probs=166.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++... .+..+++++.|+|+|+||||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|++|++|++
T Consensus         1 MKA~v~~~~-~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~   78 (348)
T 4eez_A            1 MKAAVVRHN-PDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQV   78 (348)
T ss_dssp             CEEEEECSS-CCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEcC-CCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeeccc
Confidence            899998643 3456899999999999999999999999999999999998765 48999999999999999999999999


Q ss_pred             CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      ||||++..                           ..+|+|+||+.+|.+.++++|+++++++|++++..+.|||++++ 
T Consensus        79 GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-  157 (348)
T 4eez_A           79 GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIK-  157 (348)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeeec-
Confidence            99997642                           22599999999999999999999999999999999999999985 


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .+++++|++|||+| +|++|.+++|+|+.+ |++||+++++++|+++++++|+|+
T Consensus       158 ~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~  211 (348)
T 4eez_A          158 VSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV  211 (348)
T ss_dssp             HHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             ccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE
Confidence            46899999999999 599999999999876 679999999999999999999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=2.3e-38  Score=281.62  Aligned_cols=181  Identities=25%  Similarity=0.258  Sum_probs=165.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhH-hHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY-YRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++++++.   +++++.|.|+|++|||||||.+++||++|++ ++.|.++. .+|.++|||++|+|+++|++|++|+
T Consensus         1 MkA~~~~~~~~---~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~   76 (352)
T 3fpc_A            1 MKGFAMLSIGK---VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFK   76 (352)
T ss_dssp             CEEEEEEETTE---EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEccCCC---ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCC
Confidence            89999996654   8889999999999999999999999999999 56887654 4799999999999999999999999


Q ss_pred             CCCEEEEeC-----------------------------CCCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHH
Q 036416          149 VGDIIAYAG-----------------------------GAMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       149 ~Gd~V~~~~-----------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      +||||++..                             ..+|+|+||+++|..  .++++|+++++++|+.++.++.|||
T Consensus        77 vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~  156 (352)
T 3fpc_A           77 PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGF  156 (352)
T ss_dssp             TTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHH
T ss_pred             CCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHH
Confidence            999999632                             136999999999976  8999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus       157 ~al-~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  214 (352)
T 3fpc_A          157 HGA-ELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD  214 (352)
T ss_dssp             HHH-HHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE
T ss_pred             HHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce
Confidence            998 567999999999999 59999999999999999 8999999999999999999974

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=4.6e-38  Score=281.26  Aligned_cols=186  Identities=24%  Similarity=0.345  Sum_probs=167.6

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      +||+..+..++.++.++++++|.|+|++|||||||.++|||++|++++.|.++...+|.++|||++|+|+++|++|++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            36666666666677899999999999999999999999999999999998766556899999999999999999999999


Q ss_pred             CCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416          149 VGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       149 ~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      +||||++..                                  ..+|+|+||+++|...++++|+++++++||.+++++.
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~  173 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGI  173 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHH
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHH
Confidence            999998521                                  1359999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCCCC
Q 036416          195 TAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGCHH  256 (256)
Q Consensus       195 ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga~~  256 (256)
                      |||+++.. .+++ +|++|||+| +|++|++++|+|+.+|++|+++++++++++.++ ++|+++
T Consensus       174 ta~~al~~-~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          174 TVYSPLKY-FGLDEPGKHIGIVG-LGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             HHHHHHHH-TTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSE
T ss_pred             HHHHHHHh-cCcCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCce
Confidence            99999976 5788 999999999 599999999999999999999999999998887 999873

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=2e-38  Score=290.58  Aligned_cols=194  Identities=25%  Similarity=0.323  Sum_probs=170.5

Q ss_pred             cCCcccceEEEEEcccC-----------CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh--------------
Q 036416           63 TRTRTNMVKAIRVYEHG-----------DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK--------------  117 (256)
Q Consensus        63 ~~~~~~~~~a~~~~~~~-----------~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~--------------  117 (256)
                      ....|.+|||++++.++           .++.+++++.|.|+|++|||||||.++|||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            34578899999999876           12469999999999999999999999999999985432              


Q ss_pred             --CCCCC-CCCC-CCCCcccEEEEEEeCCCCCccCCCCEEEEeCC--------------------------CCcceeeEE
Q 036416          118 --GVYKP-AKMP-FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG--------------------------AMGSYAEEQ  167 (256)
Q Consensus       118 --g~~~~-~~~p-~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~--------------------------~~G~~a~~~  167 (256)
                        |.+.. ..+| .++|||++|+|+++|++|++|++||||++...                          .+|+|+||+
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~  177 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYG  177 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEE
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeee
Confidence              22111 2356 69999999999999999999999999998541                          149999999


Q ss_pred             EecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH--cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          168 ILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC--FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       168 ~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      ++|.+.++++|+++++++||.+++++.|||+++...  +++++|++|||+||+|++|++++|+|+..|++|++++.+++|
T Consensus       178 ~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~  257 (447)
T 4a0s_A          178 VVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQK  257 (447)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             ecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            999999999999999999999999999999998643  789999999999988999999999999999999999999999


Q ss_pred             HHHHHhCCCCC
Q 036416          246 AAQAKDDGCHH  256 (256)
Q Consensus       246 ~~~~~~~Ga~~  256 (256)
                      +++++++|+++
T Consensus       258 ~~~~~~lGa~~  268 (447)
T 4a0s_A          258 EAAVRALGCDL  268 (447)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHhcCCCE
Confidence            99999999974

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3e-38  Score=280.51  Aligned_cols=183  Identities=29%  Similarity=0.342  Sum_probs=165.6

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhC-CCC--CCCCCCCCCcccEEEEEEeCCCC
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG-VYK--PAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ++||++++++++.  .+++++.|.|+|++|||||||.+++||++|++++.| .++  ...+|.++|||++|+|+++|++|
T Consensus         3 ~~mka~~~~~~g~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   80 (348)
T 2d8a_A            3 EKMVAIMKTKPGY--GAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGV   80 (348)
T ss_dssp             CEEEEEEECSSSS--SCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred             CcceEEEEECCCC--CEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCC
Confidence            4599999997763  588999999999999999999999999999999998 432  23578999999999999999999


Q ss_pred             CccCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH
Q 036416          145 TGRTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       145 ~~~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      ++|++||||++..                          ..+|+|+||+++|++.++++|+++++++||.+. .+.|||+
T Consensus        81 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~  159 (348)
T 2d8a_A           81 EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVD  159 (348)
T ss_dssp             CSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHH
T ss_pred             CcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHH
Confidence            9999999999753                          135999999999999999999999999998774 7889999


Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++ +.+++ +|++|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus       160 ~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~  215 (348)
T 2d8a_A          160 TV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY  215 (348)
T ss_dssp             HH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE
T ss_pred             HH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            99 56789 9999999997 9999999999999999 9999999999999999999873

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2.1e-38  Score=279.37  Aligned_cols=188  Identities=21%  Similarity=0.316  Sum_probs=169.4

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCC
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      +++||++++++++.+..+++++.|.|+|++|||+|||.++|||++|++++.|..+. ..+|.++|||++|+|+++  +++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence            45699999998876667999999999999999999999999999999999887543 357899999999999996  468


Q ss_pred             ccCCCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH--HcCCCCCC-EEEEecC
Q 036416          146 GRTVGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR--CFKVEPGH-TVLIQAA  217 (256)
Q Consensus       146 ~~~~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~-~VlI~ga  217 (256)
                      +|++||||++..     ..+|+|+||+++|++.++++|+++++++||.+++.+.|||.+++.  .+++++|+ +|||+||
T Consensus        80 ~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga  159 (330)
T 1tt7_A           80 RFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGA  159 (330)
T ss_dssp             TCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEST
T ss_pred             CCCCCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECC
Confidence            899999999864     235999999999999999999999999999999999999988753  36789997 9999998


Q ss_pred             CChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          218 AGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       218 ~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++|++++|+|+.+|++|++++++++|+++++++|+++
T Consensus       160 ~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~  198 (330)
T 1tt7_A          160 TGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE  198 (330)
T ss_dssp             TSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcE
Confidence            899999999999999999999999999999999999873

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=3.8e-38  Score=289.47  Aligned_cols=194  Identities=28%  Similarity=0.313  Sum_probs=170.8

Q ss_pred             cCCcccceEEEEEcccC-------------CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---------
Q 036416           63 TRTRTNMVKAIRVYEHG-------------DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---------  120 (256)
Q Consensus        63 ~~~~~~~~~a~~~~~~~-------------~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---------  120 (256)
                      ....|.+|||+++.+++             .++.++++++|.|+|++|||||||.++|||++|++...+..         
T Consensus        24 ~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           24 ALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             HSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             cCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            34678899999999762             23578999999999999999999999999999987653321         


Q ss_pred             ----C----CCCCC-CCCCcccEEEEEEeCCCCCccCCCCEEEEeCC--------------------------CCcceee
Q 036416          121 ----K----PAKMP-FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG--------------------------AMGSYAE  165 (256)
Q Consensus       121 ----~----~~~~p-~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~--------------------------~~G~~a~  165 (256)
                          .    ...+| .++|||++|+|+++|++|++|++||+|++.+.                          .+|+|+|
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~ae  183 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAE  183 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBS
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccc
Confidence                0    12356 69999999999999999999999999998531                          2499999


Q ss_pred             EEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH--cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          166 EQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC--FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       166 ~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      |+++|.+.++++|+++++++||.+++.+.|||+++...  +++++|++|||+||+|++|++++|+|+.+|++|++++.++
T Consensus       184 y~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~  263 (456)
T 3krt_A          184 IALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP  263 (456)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             eEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH
Confidence            99999999999999999999999999999999998754  7899999999999889999999999999999999999999


Q ss_pred             hhHHHHHhCCCCC
Q 036416          244 EKAAQAKDDGCHH  256 (256)
Q Consensus       244 ~~~~~~~~~Ga~~  256 (256)
                      +|+++++++|+++
T Consensus       264 ~~~~~~~~lGa~~  276 (456)
T 3krt_A          264 QKAEICRAMGAEA  276 (456)
T ss_dssp             HHHHHHHHHTCCE
T ss_pred             HHHHHHHhhCCcE
Confidence            9999999999973

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=7.4e-38  Score=278.86  Aligned_cols=183  Identities=26%  Similarity=0.242  Sum_probs=163.6

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CC--CCCCCCCCCcccEEEEEEeCCCC
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YK--PAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ++||+++++++   +.+++++.|.|+|++|||||||.++|||++|++++.|. ..  ...+|.++|||++|+|+++|++|
T Consensus         6 ~~mka~~~~~~---~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V   82 (356)
T 1pl8_A            6 PNNLSLVVHGP---GDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (356)
T ss_dssp             CCCEEEEEEET---TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             cCceEEEEecC---CcEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCC
Confidence            56999999964   46999999999999999999999999999999988743 21  13478999999999999999999


Q ss_pred             CccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          145 TGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       145 ~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      ++|++||||++..                           ..+|+|+||+++|.+.++++|+++++++|+.+ .++.|||
T Consensus        83 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~  161 (356)
T 1pl8_A           83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGI  161 (356)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHH
T ss_pred             CCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHH
Confidence            9999999998752                           13699999999999999999999999998865 5788999


Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus       162 ~al-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  219 (356)
T 1pl8_A          162 HAC-RRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL  219 (356)
T ss_dssp             HHH-HHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            999 567999999999999 59999999999999999 8999999999999999999973

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.3e-38  Score=278.52  Aligned_cols=182  Identities=26%  Similarity=0.342  Sum_probs=162.7

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC--CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--PAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      +||++++++++.  .+++++.|.|+|++|||||||.++|||++|++++.|.++  ...+|.++|||++|+|+++|++ ++
T Consensus         3 ~mka~~~~~~g~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            3 KSKAALLKKFSE--PLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             EEEBCEECSCCC-------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             eeEEEEEecCCC--CCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            599999997764  388899999999999999999999999999999999765  3457999999999999999999 99


Q ss_pred             cCCCCEEEEeC--------------------------CCCcceeeEEEec-CCCeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416          147 RTVGDIIAYAG--------------------------GAMGSYAEEQILP-ANKVVPVPSSIDPVIAASIMLKGMTAQFL  199 (256)
Q Consensus       147 ~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~-~~~~~~ip~~~~~~~aa~l~~~~~ta~~~  199 (256)
                      |++||||++..                          ..+|+|+||+++| ++.++++ +++++++|+.+++++.|||++
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~a  158 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGA  158 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHH
Confidence            99999997653                          1359999999999 9999999 999999999999999999999


Q ss_pred             HHHH----cCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHhCCCCC
Q 036416          200 LRRC----FKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       200 l~~~----~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +...    +++ +|++|||+|+ |++|++++|+|+.+  |++|++++++++|+++++++|+|+
T Consensus       159 l~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  219 (344)
T 2h6e_A          159 IRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY  219 (344)
T ss_dssp             HHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE
T ss_pred             HHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE
Confidence            9775    388 9999999997 99999999999999  999999999999999999999974

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-37  Score=278.95  Aligned_cols=186  Identities=26%  Similarity=0.329  Sum_probs=166.7

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      .+.-+||++++++++  +.+++++.|.|+|++|||||||.+++||++|++++.|.++...+|.++|||++|+|+++| +|
T Consensus        13 ~~~~~mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V   89 (380)
T 1vj0_A           13 MMGLKAHAMVLEKFN--QPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GE   89 (380)
T ss_dssp             -CCEEEEEEEBCSTT--SCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SC
T ss_pred             HhhhheEEEEEecCC--CCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Cc
Confidence            345569999999776  358999999999999999999999999999999999976644589999999999999999 99


Q ss_pred             C------ccCCCCEEEEeC-----------------------------------CCCcceeeEEEe-cCCCeEECCCCCC
Q 036416          145 T------GRTVGDIIAYAG-----------------------------------GAMGSYAEEQIL-PANKVVPVPSSID  182 (256)
Q Consensus       145 ~------~~~~Gd~V~~~~-----------------------------------~~~G~~a~~~~v-~~~~~~~ip~~~~  182 (256)
                      +      +|++||||++..                                   ..+|+|+||+++ |.+.++++|++++
T Consensus        90 ~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~  169 (380)
T 1vj0_A           90 KRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDD  169 (380)
T ss_dssp             CBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSC
T ss_pred             cccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCC
Confidence            9      999999999741                                   226999999999 9999999999999


Q ss_pred             HH-HHhhhchhHHHHHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          183 PV-IAASIMLKGMTAQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++ +|+.+. ++.|||+++. .++ +++|++|||+| +|++|++++|+|+.+|+ +|++++++++|+++++++|+|+
T Consensus       170 ~~~~Aa~~~-~~~ta~~al~-~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  243 (380)
T 1vj0_A          170 LDVLAMAMC-SGATAYHAFD-EYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL  243 (380)
T ss_dssp             HHHHHHHTT-HHHHHHHHHH-TCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             hHHhHhhhc-HHHHHHHHHH-hcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcE
Confidence            99 666555 9999999995 578 99999999999 79999999999999995 9999999999999999999973

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.7e-37  Score=275.03  Aligned_cols=180  Identities=27%  Similarity=0.263  Sum_probs=159.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||++++++|   .+++++.|+|++ +||||||||.++|||++|++.+.|..+. .+|+++|||++|+|+++|++|++++
T Consensus         1 MkAvv~~~~g---~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~   76 (346)
T 4a2c_A            1 MKSVVNDTDG---IVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLH   76 (346)
T ss_dssp             CEEEEECSSS---CEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CCEEEEecCC---CEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCccccc
Confidence            8999999665   499999999985 7999999999999999999999887654 4899999999999999999999999


Q ss_pred             CCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416          149 VGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR  202 (256)
Q Consensus       149 ~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~  202 (256)
                      +||+|++..                          ..+|+|+||+++|++.++++|+++++++||.+.  .+++++.+..
T Consensus        77 ~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~--~~~~~~~~~~  154 (346)
T 4a2c_A           77 PGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE--PITVGLHAFH  154 (346)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH--HHHHHHHHHH
T ss_pred             CCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch--HHHHHHHHHH
Confidence            999998743                          235999999999999999999999999998653  4555555556


Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ..++++|++|||+|+ |++|++++|+|+.+|++ +++++.+++|+++++++|||+
T Consensus       155 ~~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~  208 (346)
T 4a2c_A          155 LAQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ  208 (346)
T ss_dssp             HTTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HhccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeE
Confidence            789999999999995 99999999999999995 678888999999999999974

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-38  Score=277.13  Aligned_cols=186  Identities=25%  Similarity=0.316  Sum_probs=168.1

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      +||++++++++.+..+++++.|.|+|++|||+|||.++|||++|++++.|..+. ..+|.++|||++|+|+++  ++++|
T Consensus         3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~   80 (328)
T 1xa0_A            3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF   80 (328)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred             cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence            599999998886667899999999999999999999999999999998886543 357899999999999995  57889


Q ss_pred             CCCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH--HcCCCCCC-EEEEecCCC
Q 036416          148 TVGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR--CFKVEPGH-TVLIQAAAG  219 (256)
Q Consensus       148 ~~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~-~VlI~ga~g  219 (256)
                      ++||||++..     ..+|+|+||+++|++.++++|+++++++|+.+++++.|||.+++.  .+++++|+ +|||+|++|
T Consensus        81 ~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G  160 (328)
T 1xa0_A           81 REGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATG  160 (328)
T ss_dssp             CTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTS
T ss_pred             CCCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCC
Confidence            9999999864     235999999999999999999999999999999999999988753  36789997 999999889


Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++|++++|+|+.+|++|++++++++|+++++++|+|+
T Consensus       161 ~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~  197 (328)
T 1xa0_A          161 GVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE  197 (328)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcE
Confidence            9999999999999999999999999999999999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.6e-37  Score=277.29  Aligned_cols=182  Identities=24%  Similarity=0.195  Sum_probs=163.1

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCC--------CCCCCeEEEEEeEEeeChhhhHhHhCCC-C--CCCCCCCCCcccE
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIG--------EPGEGEIRVRNKAIGLNFIDVYYRKGVY-K--PAKMPFTPGMEAV  134 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~--~~~~p~~lG~e~~  134 (256)
                      .+++|||++++.   ++.+++++.|.|        +|++|||||||.+++||++|++++.+.. .  ...+|.++|||++
T Consensus         5 ~~~~mka~~~~~---~~~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~   81 (363)
T 3m6i_A            5 ASKTNIGVFTNP---QHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESA   81 (363)
T ss_dssp             CCSCCEEEEECT---TCCEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEE
T ss_pred             CcccceeEEEeC---CCcEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceE
Confidence            467799999994   556999999999        9999999999999999999999887432 1  2357999999999


Q ss_pred             EEEEEeCCCCCccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHh
Q 036416          135 GEVVAVGPGLTGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAA  187 (256)
Q Consensus       135 G~V~~vG~~v~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa  187 (256)
                      |+|+++|++|++|++||||++..                           ..+|+|+||+++|.+.++++|+ +++++||
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa  160 (363)
T 3m6i_A           82 GEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGA  160 (363)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHH
T ss_pred             EEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHH
Confidence            99999999999999999999752                           2469999999999999999999 9999999


Q ss_pred             hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416          188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .+ .++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|++ |++++.+++|+++++++ ++
T Consensus       161 ~~-~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~  225 (363)
T 3m6i_A          161 ML-EPLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP  225 (363)
T ss_dssp             HH-HHHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT
T ss_pred             hh-hHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch
Confidence            77 5788999999 6679999999999996 99999999999999997 99999999999999998 53

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=8.2e-38  Score=280.89  Aligned_cols=184  Identities=24%  Similarity=0.346  Sum_probs=166.6

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-------------------------
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-------------------------  121 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-------------------------  121 (256)
                      +.+||+++...  .+..+++++.|.|+|++|||||||.+++||++|++++.|.++                         
T Consensus         5 ~~~mka~v~~~--~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~   82 (379)
T 3iup_A            5 ALQLRSRIKSS--GELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMR   82 (379)
T ss_dssp             EEEEEEEECTT--SEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHH
T ss_pred             hhhHHHHHhcC--CCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccc
Confidence            45699998863  345699999999999999999999999999999999988531                         


Q ss_pred             ----CCCCCCCCCcccEEEEEEeCCCC-CccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHH
Q 036416          122 ----PAKMPFTPGMEAVGEVVAVGPGL-TGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA  196 (256)
Q Consensus       122 ----~~~~p~~lG~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta  196 (256)
                          ...+|.++|||++|+|+++|++| ++|++||||++...  |+|+||+++|.+.++++|+++++++|+++++.++||
T Consensus        83 ~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~~--G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  160 (379)
T 3iup_A           83 SMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGG--AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTA  160 (379)
T ss_dssp             HHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECCS--CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHH
T ss_pred             ccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecCC--CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHH
Confidence                12468899999999999999999 89999999998875  999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEec-CCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQA-AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~g-a~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+++... . ++|++|||+| |+|++|++++|+|+.+|++|++++++++|+++++++|+|+
T Consensus       161 ~~~~~~~-~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  219 (379)
T 3iup_A          161 LGMVETM-R-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVH  219 (379)
T ss_dssp             HHHHHHH-H-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSC
T ss_pred             HHHHHHh-c-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcE
Confidence            9877654 4 8999999996 7899999999999999999999999999999999999985

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.5e-37  Score=272.24  Aligned_cols=182  Identities=31%  Similarity=0.531  Sum_probs=166.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC--------CCCCCCCCCcccEEEEEEeC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--------PAKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~~lG~e~~G~V~~vG  141 (256)
                      ||++++++++.+  +++++.|.|+|+++||||||.+++||++|++++.|.++        ...+|.++|||++|+|+++|
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG   78 (347)
T 1jvb_A            1 MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG   78 (347)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred             CeEEEEecCCCC--eEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEEC
Confidence            799999987644  88899999999999999999999999999999988654        23579999999999999999


Q ss_pred             CCCCccCCCCEEEEeC--------------------------CCCcceeeEEEecC-CCeEECCCCCCHHHHhhhchhHH
Q 036416          142 PGLTGRTVGDIIAYAG--------------------------GAMGSYAEEQILPA-NKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~-~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      ++|++|++||||++..                          ..+|+|+||+++|+ +.++++ +++++++|+.+++++.
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~  157 (347)
T 1jvb_A           79 DEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGI  157 (347)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHH
T ss_pred             CCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHH
Confidence            9999999999997643                          13599999999999 999999 9999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCC
Q 036416          195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      |||+++.. +++++|++|||+|++|++|++++|+++.. |++|++++++++++++++++|++
T Consensus       158 ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~  218 (347)
T 1jvb_A          158 TTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD  218 (347)
T ss_dssp             HHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS
T ss_pred             HHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence            99999965 79999999999998779999999999999 99999999999999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.2e-37  Score=276.13  Aligned_cols=180  Identities=27%  Similarity=0.311  Sum_probs=163.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||++++++++.+  ++++++|.|+|++|||||||.++|||++|++++.|.++   ...+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2dq4_A            1 MRALAKLAPEEG--LTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRR   78 (343)
T ss_dssp             CEEEEECSSSSS--CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CeEEEEeCCCCc--EEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCc
Confidence            799999987754  88999999999999999999999999999999998754   2457899999999999999999999


Q ss_pred             cCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          147 RTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       147 ~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      |++||||++..                          ..+|+|+||+++|.+.++++|+++++++|+.+ ..+.|||+++
T Consensus        79 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l  157 (343)
T 2dq4_A           79 PQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTV  157 (343)
T ss_dssp             SCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHHH
Confidence            99999999842                          23599999999999999999999999999876 5778999999


Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ...+++ +|++|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++ ++
T Consensus       158 ~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~  210 (343)
T 2dq4_A          158 YAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD  210 (343)
T ss_dssp             HSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS
T ss_pred             HHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH
Confidence            757789 9999999997 9999999999999999 999999999999999888 76

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.2e-37  Score=279.19  Aligned_cols=173  Identities=23%  Similarity=0.232  Sum_probs=155.7

Q ss_pred             ceEEEEeeCCC-CCCCeEEEEEeEEeeChhhhHhHhCCCC-------CCCCCCCCCcccEEEEEEeCCCC------CccC
Q 036416           83 VLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYK-------PAKMPFTPGMEAVGEVVAVGPGL------TGRT  148 (256)
Q Consensus        83 ~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~-------~~~~p~~lG~e~~G~V~~vG~~v------~~~~  148 (256)
                      .++++++|.|+ |++|||||||.+++||++|++++.|...       ...+|.++|||++|+|+++|++|      ++|+
T Consensus        41 ~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~  120 (404)
T 3ip1_A           41 EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFE  120 (404)
T ss_dssp             EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECC
T ss_pred             ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCC
Confidence            78999999999 9999999999999999999999886421       23578999999999999999999      8999


Q ss_pred             CCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCC------HHHHhhhchhHHHH
Q 036416          149 VGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSID------PVIAASIMLKGMTA  196 (256)
Q Consensus       149 ~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~------~~~aa~l~~~~~ta  196 (256)
                      +||||++..                          ..+|+|+||+++|.+.++++|+.++      +.++++++.++.||
T Consensus       121 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta  200 (404)
T 3ip1_A          121 IGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA  200 (404)
T ss_dssp             TTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHH
Confidence            999999842                          2369999999999999999999875      56688899999999


Q ss_pred             HHHHHHH-cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          197 QFLLRRC-FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       197 ~~~l~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+++... +++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus       201 ~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  261 (404)
T 3ip1_A          201 YNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH  261 (404)
T ss_dssp             HHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE
T ss_pred             HHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE
Confidence            9998755 48999999999996 9999999999999999 8999999999999999999974

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=5.2e-37  Score=277.27  Aligned_cols=181  Identities=22%  Similarity=0.177  Sum_probs=164.4

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCC-CC-----CeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEP-GE-----GEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +|||++++++   +.++++++|.|+| ++     +||||||.++|||++|++++.|.++ ..+|.++|||++|+|+++|+
T Consensus         2 ~MkA~~~~~~---~~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~   77 (398)
T 2dph_A            2 GNKSVVYHGT---RDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGS   77 (398)
T ss_dssp             CEEEEEEEET---TEEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECT
T ss_pred             ccEEEEEEcC---CCEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECC
Confidence            5999999965   4689999999988 68     9999999999999999999998754 34789999999999999999


Q ss_pred             CCCccCCCCEEEEeC-------------------------------------CCCcceeeEEEecCC--CeEECCCCCCH
Q 036416          143 GLTGRTVGDIIAYAG-------------------------------------GAMGSYAEEQILPAN--KVVPVPSSIDP  183 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~-------------------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~  183 (256)
                      +|++|++||||++..                                     ..+|+|+||+++|..  .++++|+++++
T Consensus        78 ~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~  157 (398)
T 2dph_A           78 DVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQA  157 (398)
T ss_dssp             TCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHH
T ss_pred             CCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCCh
Confidence            999999999998631                                     135999999999987  89999999999


Q ss_pred             HH----HhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          184 VI----AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       184 ~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++    |++++.++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 2dph_A          158 MEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE  232 (398)
T ss_dssp             HHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE
T ss_pred             hhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            98    888999999999999 5689999999999995 9999999999999999 899999999999999999983

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-36  Score=274.54  Aligned_cols=181  Identities=20%  Similarity=0.213  Sum_probs=163.3

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCC-CCe------EEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPG-EGE------IRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG  141 (256)
                      +||++++++++   .+++++.|.|+|+ ++|      |||||.+++||++|++++.|.++. .+|.++|||++|+|+++|
T Consensus         2 ~Mka~~~~~~~---~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~p~v~GhE~~G~V~~vG   77 (398)
T 1kol_A            2 GNRGVVYLGSG---KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKG   77 (398)
T ss_dssp             CEEEEEEEETT---EEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEEC
T ss_pred             ccEEEEEecCC---ceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC-CCCcccCcccEEEEEEEC
Confidence            59999999654   5899999999996 898      999999999999999999987643 478999999999999999


Q ss_pred             CCCCccCCCCEEEEeC------------------------------------CCCcceeeEEEecCC--CeEECCCCCCH
Q 036416          142 PGLTGRTVGDIIAYAG------------------------------------GAMGSYAEEQILPAN--KVVPVPSSIDP  183 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~  183 (256)
                      ++|++|++||||++..                                    ...|+|+||+++|..  .++++|+++++
T Consensus        78 ~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~  157 (398)
T 1kol_A           78 RDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA  157 (398)
T ss_dssp             TTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHH
T ss_pred             CCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcch
Confidence            9999999999998521                                    135899999999986  89999999999


Q ss_pred             HH----HhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416          184 VI----AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       184 ~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++    +++++..+.|||+++. .+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|++
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 1kol_A          158 MEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE  232 (398)
T ss_dssp             HHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred             hhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            88    7889999999999996 67999999999999 59999999999999999 799999999999999999985

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=5.4e-37  Score=273.37  Aligned_cols=179  Identities=21%  Similarity=0.145  Sum_probs=161.5

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCC---CCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKM---PFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~---p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      |||+++++++.  .+++++.|.|+|++|||||||.++|||++|++++.|.++...+   |.++|||++| |+++|++ ++
T Consensus         1 MkA~~~~~~~~--~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~   76 (357)
T 2b5w_A            1 MKAIAVKRGED--RPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TE   76 (357)
T ss_dssp             CEEEEEETTCS--SCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SS
T ss_pred             CeEEEEeCCCC--ceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CC
Confidence            79999997654  3889999999999999999999999999999999997654456   8999999999 9999999 99


Q ss_pred             cCCCCEEEEeC-------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHH
Q 036416          147 RTVGDIIAYAG-------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT  195 (256)
Q Consensus       147 ~~~Gd~V~~~~-------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~t  195 (256)
                      |++||||++..                               ..+|+|+||+++|++.++++|++++ + +|+++.++.|
T Consensus        77 ~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~-~aal~~~~~t  154 (357)
T 2b5w_A           77 LEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-E-LGFLIEPISI  154 (357)
T ss_dssp             CCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-T-TGGGHHHHHH
T ss_pred             CCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-h-hhhhhchHHH
Confidence            99999999752                               1259999999999999999999999 5 4568889999


Q ss_pred             HHHHHHHHcCCCCC------CEEEEecCCChHHHHH-HHHH-HHcCCe-EEEEeCChh---hHHHHHhCCCCC
Q 036416          196 AQFLLRRCFKVEPG------HTVLIQAAAGGVGSLL-CQWA-NALGAT-VIGTVSTKE---KAAQAKDDGCHH  256 (256)
Q Consensus       196 a~~~l~~~~~~~~g------~~VlI~ga~g~vG~~a-i~la-~~~ga~-Vi~~~~~~~---~~~~~~~~Ga~~  256 (256)
                      ||+++ +.+++++|      ++|||+|+ |++|+++ +|+| +.+|++ |++++++++   |+++++++|+|+
T Consensus       155 a~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~  225 (357)
T 2b5w_A          155 TEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATY  225 (357)
T ss_dssp             HHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEE
T ss_pred             HHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcc
Confidence            99999 55789999      99999997 9999999 9999 999997 999999988   999999999873

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.2e-35  Score=262.40  Aligned_cols=182  Identities=26%  Similarity=0.325  Sum_probs=163.4

Q ss_pred             cceEEEEEcc--cC--CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcc----cEEEEEE
Q 036416           68 NMVKAIRVYE--HG--DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGME----AVGEVVA  139 (256)
Q Consensus        68 ~~~~a~~~~~--~~--~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e----~~G~V~~  139 (256)
                      ++||+++++.  +|  .++.+++++.|.|+|++|||||||.+++||++|++.+.+... ..+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence            5699999986  23  568899999999999999999999999999999988876432 2357788887    7999999


Q ss_pred             eCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHH--hhhchhHHHHHHHHHHHcCCCCCCEEEEecC
Q 036416          140 VGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIA--ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAA  217 (256)
Q Consensus       140 vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga  217 (256)
                      .  ++++|++||||++.    |+|+||+++|.+.++++|+++++.++  ++++.++.|||+++.+.+++++|++|||+|+
T Consensus        85 ~--~v~~~~vGdrV~~~----G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga  158 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGA  158 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESST
T ss_pred             c--CCCCCCCCCEEecc----CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            4  58899999999975    78999999999999999999977776  7889999999999988889999999999998


Q ss_pred             CChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCCCCC
Q 036416          218 AGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDGCHH  256 (256)
Q Consensus       218 ~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~Ga~~  256 (256)
                      +|++|++++|+|+..|++|+++++++++++++ +++|+++
T Consensus       159 ~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~  198 (336)
T 4b7c_A          159 AGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDG  198 (336)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCE
Confidence            89999999999999999999999999999999 8999863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.5e-35  Score=258.16  Aligned_cols=172  Identities=37%  Similarity=0.517  Sum_probs=158.3

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      ||++++++++.+..+  ++.|.|+|++|||+|||.++|||++|++++.|.++. ..+|.++|||++|+|+          
T Consensus         1 Mka~~~~~~g~~~~l--~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~----------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLEL--VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE----------   68 (302)
T ss_dssp             CEEEEECSTTSCEEE--EECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET----------
T ss_pred             CeEEEEcCCCCchhe--EECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE----------
Confidence            799999988876444  488999999999999999999999999999997654 3579999999999998          


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW  228 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l  228 (256)
                       ||||++... +|+|+||+++|++.++++|+++++++||+++.++.|||+++...+ +++|++|||+|++|++|++++|+
T Consensus        69 -GdrV~~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~  145 (302)
T 1iz0_A           69 -GRRYAALVP-QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQV  145 (302)
T ss_dssp             -TEEEEEECS-SCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHH
T ss_pred             -CcEEEEecC-CcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHH
Confidence             999998764 599999999999999999999999999999999999999998777 99999999999889999999999


Q ss_pred             HHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          229 ANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      |+..|++|++++++++++++++++|+++
T Consensus       146 a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~  173 (302)
T 1iz0_A          146 ARAMGLRVLAAASRPEKLALPLALGAEE  173 (302)
T ss_dssp             HHHTTCEEEEEESSGGGSHHHHHTTCSE
T ss_pred             HHHCCCEEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999999999999999999873

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=3.3e-35  Score=261.68  Aligned_cols=184  Identities=22%  Similarity=0.302  Sum_probs=164.4

Q ss_pred             cccceEEEEE-ccc---CCC--CceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhC----CCC-CCCCCCCCCccc
Q 036416           66 RTNMVKAIRV-YEH---GDP--EVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKG----VYK-PAKMPFTPGMEA  133 (256)
Q Consensus        66 ~~~~~~a~~~-~~~---~~~--~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~~-~~~~p~~lG~e~  133 (256)
                      .+++||++++ +.+   |.|  +.+++++.|.|+| ++|||||||.++|||++|++.+.+    .++ ...+|.++|||+
T Consensus         5 ~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~   84 (357)
T 2zb4_A            5 AAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGG   84 (357)
T ss_dssp             -CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEE
T ss_pred             ccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccE
Confidence            4567999999 565   555  7899999999999 999999999999999999987765    232 234788999999


Q ss_pred             EEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCC-----CHHHHhhhchhHHHHHHHHHHHcCCCC
Q 036416          134 VGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSI-----DPVIAASIMLKGMTAQFLLRRCFKVEP  208 (256)
Q Consensus       134 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~-----~~~~aa~l~~~~~ta~~~l~~~~~~~~  208 (256)
                      +|+|++  ++|++|++||||++..   |+|+||+++|.+.++++|+++     +++ +++++.++.|||+++.+.+++++
T Consensus        85 ~G~V~~--~~v~~~~vGdrV~~~~---G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~  158 (357)
T 2zb4_A           85 IGIIEE--SKHTNLTKGDFVTSFY---WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITA  158 (357)
T ss_dssp             EEEEEE--ECSTTCCTTCEEEEEE---EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCT
T ss_pred             EEEEEe--cCCCCCCCCCEEEecC---CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCC
Confidence            999999  8899999999999874   799999999999999999999     555 67889999999999988889999


Q ss_pred             C--CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh-CCCC
Q 036416          209 G--HTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD-DGCH  255 (256)
Q Consensus       209 g--~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~-~Ga~  255 (256)
                      |  ++|||+|++|++|++++|+|+..|+ +|+++++++++++.+++ +|++
T Consensus       159 g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~  209 (357)
T 2zb4_A          159 GSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD  209 (357)
T ss_dssp             TSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS
T ss_pred             CCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc
Confidence            9  9999999999999999999999999 99999999999999886 9986

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=3.7e-35  Score=262.36  Aligned_cols=179  Identities=20%  Similarity=0.192  Sum_probs=156.9

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCC-CeEEEEEeEEeeChhhhHhHhC--CCCCCCC---CCCCCcccEEEEEEeCCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGE-GEIRVRNKAIGLNFIDVYYRKG--VYKPAKM---PFTPGMEAVGEVVAVGPG  143 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~~~~~~---p~~lG~e~~G~V~~vG~~  143 (256)
                      |||+++++++.+  +++++.|.|+|++ +||||||.++|||++|++++.|  .++...+   |.++|||++|+|++  ++
T Consensus         1 MkA~~~~~~g~~--l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~   76 (366)
T 2cdc_A            1 MKAIIVKPPNAG--VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY   76 (366)
T ss_dssp             CEEEEECTTSCC--CEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC
T ss_pred             CeEEEEeCCCCc--eEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC
Confidence            799999987753  8899999999999 9999999999999999999998  5543346   89999999999999  77


Q ss_pred             CCccCCCCEEEEeC--------------------------C---CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416          144 LTGRTVGDIIAYAG--------------------------G---AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       144 v~~~~~Gd~V~~~~--------------------------~---~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                       ++|++||||++..                          .   .+|+|+||+++|++.++++|++++ ++|+ ++.++.
T Consensus        77 -~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~  153 (366)
T 2cdc_A           77 -HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLA  153 (366)
T ss_dssp             -SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHH
T ss_pred             -CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHH
Confidence             8899999999742                          1   359999999999999999999999 7764 778999


Q ss_pred             HHHHHHH--H--HcCCC--C-------CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---hhHHHHHhCCCCC
Q 036416          195 TAQFLLR--R--CFKVE--P-------GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK---EKAAQAKDDGCHH  256 (256)
Q Consensus       195 ta~~~l~--~--~~~~~--~-------g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~---~~~~~~~~~Ga~~  256 (256)
                      |||+++.  .  .++++  +       |++|||+|+ |++|++++|+|+.+|++|+++++++   +++++++++|+|+
T Consensus       154 ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~  230 (366)
T 2cdc_A          154 DIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNY  230 (366)
T ss_dssp             HHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEE
T ss_pred             HHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCce
Confidence            9999997  4  67888  8       999999997 9999999999999999999999998   8999999999863

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=4e-35  Score=284.95  Aligned_cols=180  Identities=29%  Similarity=0.376  Sum_probs=164.4

Q ss_pred             eEEEEEcccCCCCceEEEEeeC--CCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEI--GEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ...+.+..+|.++.+++++.+.  |+|++|||+|||.++|||++|++++.|.++   .|.++|||++|+|+++|++|++|
T Consensus       210 ~~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~  286 (795)
T 3slk_A          210 GWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGL  286 (795)
T ss_dssp             SCCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSS
T ss_pred             eEEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcC
Confidence            4668888999999999998875  578999999999999999999999999765   35679999999999999999999


Q ss_pred             CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416          148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ  227 (256)
Q Consensus       148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~  227 (256)
                      ++||||+++..  |+|+||++++...++++|+++++++||++++.++|||+++.+.+++++|++|||+||+|++|++++|
T Consensus       287 ~vGDrV~~~~~--G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiq  364 (795)
T 3slk_A          287 APGDRVMGMIP--KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQ  364 (795)
T ss_dssp             CTTCEEEECCS--SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHH
T ss_pred             CCCCEEEEEec--CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHH
Confidence            99999998876  9999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          228 WANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +||.+|++||++++++ |.++++ +|+++
T Consensus       365 lAk~~Ga~V~~t~~~~-k~~~l~-lga~~  391 (795)
T 3slk_A          365 LARHLGAEVYATASED-KWQAVE-LSREH  391 (795)
T ss_dssp             HHHHTTCCEEEECCGG-GGGGSC-SCGGG
T ss_pred             HHHHcCCEEEEEeChH-Hhhhhh-cChhh
Confidence            9999999999999765 666555 77653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=8.8e-33  Score=243.73  Aligned_cols=179  Identities=23%  Similarity=0.256  Sum_probs=156.7

Q ss_pred             ccceEEEEEccc--CC--CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416           67 TNMVKAIRVYEH--GD--PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        67 ~~~~~a~~~~~~--~~--~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +++||++++.++  |.  ++.+++++.|.|+|++|||||||.++|||+.|... .+   ...+|.++|||++|+|++.  
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~---~~~~p~~~g~e~~G~Vv~~--   78 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK---RLKEGAVMMGQQVARVVES--   78 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT---TCCTTSBCCCCEEEEEEEE--
T ss_pred             cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC---cCCCCcccccceEEEEEec--
Confidence            467999999985  43  37799999999999999999999999999998742 22   1236789999999999995  


Q ss_pred             CCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCC----CCHHH-HhhhchhHHHHHHHHHHHcCCCCCCEEEEecC
Q 036416          143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSS----IDPVI-AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAA  217 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~----~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga  217 (256)
                      ++++|++||||++.    |+|+||+++|.+.++++|++    +++++ +++++.++.|||+++.+.+++++|++|||+|+
T Consensus        79 ~v~~~~vGdrV~~~----g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  154 (333)
T 1v3u_A           79 KNSAFPAGSIVLAQ----SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAA  154 (333)
T ss_dssp             SCTTSCTTCEEEEC----CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEEST
T ss_pred             CCCCCCCCCEEEec----CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecC
Confidence            67899999999875    78999999999999999997    88887 48899999999999988889999999999999


Q ss_pred             CChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          218 AGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       218 ~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++|++++|+++..|++|+++++++++++.++++|++
T Consensus       155 ~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~  192 (333)
T 1v3u_A          155 AGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD  192 (333)
T ss_dssp             TBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=2.3e-32  Score=242.11  Aligned_cols=183  Identities=24%  Similarity=0.320  Sum_probs=157.9

Q ss_pred             ccceEEEEEccc--CCCC--ceEEE--EeeCCC-CCCCeEEEEEeEEeeChhhhHhHhCCCCC----CCCCCCCCcccEE
Q 036416           67 TNMVKAIRVYEH--GDPE--VLKWE--DVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYKP----AKMPFTPGMEAVG  135 (256)
Q Consensus        67 ~~~~~a~~~~~~--~~~~--~l~~~--~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~lG~e~~G  135 (256)
                      +.+||+++....  +.|.  .++++  +.+.|. |++|||||||.++++|+.|. .+.|....    ..+|.++|||++|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            456999998876  6676  68888  888886 89999999999999888875 45554322    1368999999999


Q ss_pred             EEEE--eCCCCCccCCCCEEEEeCCCCcceeeEEEecCCC--eEECCC---CCCHHHHhhhchhHHHHHHHHHHHcCCCC
Q 036416          136 EVVA--VGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANK--VVPVPS---SIDPVIAASIMLKGMTAQFLLRRCFKVEP  208 (256)
Q Consensus       136 ~V~~--vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~--~~~ip~---~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  208 (256)
                      ++++  +|+++++|++||||++.    |+|+||++++...  ++++|+   .++++ ++++++++.|||+++.+.+++++
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~----g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~  155 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI----VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKE  155 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE----EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCT
T ss_pred             ceEEEEEecCCCCCCCCCEEEee----cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCC
Confidence            9999  99999999999999875    7899999999876  999996   35665 67888999999999988889999


Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga~  255 (256)
                      |++|||+|++|++|++++|+|+..|++|++++++++++++++ ++|++
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~  203 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD  203 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc
Confidence            999999998899999999999999999999999999999998 79986

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.92  E-value=1.4e-24  Score=230.47  Aligned_cols=173  Identities=25%  Similarity=0.249  Sum_probs=151.5

Q ss_pred             EEEcccCCCCceEEEEeeCCC-CC--CCeEEEEEeEEeeChhhhHhHhCCCCCC-------CCCCCCCcccEEEEEEeCC
Q 036416           73 IRVYEHGDPEVLKWEDVEIGE-PG--EGEIRVRNKAIGLNFIDVYYRKGVYKPA-------KMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~p~-~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~~-------~~p~~lG~e~~G~V~~vG~  142 (256)
                      +....+|..+.+.+.+.+... +.  ++||+|+|.++|+|+.|+++..|.++..       ..|.++|+|++|+|.    
T Consensus      1533 l~~~~~g~l~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~---- 1608 (2512)
T 2vz8_A         1533 VNVLSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA---- 1608 (2512)
T ss_dssp             EEESSTTCTTSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----
T ss_pred             EEccCCCCcCceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----
Confidence            445566777788888766543 33  7999999999999999999999976532       235689999999873    


Q ss_pred             CCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHH
Q 036416          143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG  222 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG  222 (256)
                            +||+|+++.. .|+|+||+++|.+.++++|+++++++||++++.++|||+++...+++++|++|||+||+|++|
T Consensus      1609 ------vGdrV~g~~~-~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG 1681 (2512)
T 2vz8_A         1609 ------SGRRVMGMVP-AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVG 1681 (2512)
T ss_dssp             ------TSCCEEEECS-SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ------cCCEEEEeec-CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHH
Confidence                  7999998864 489999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEeCChhhHHHHHh----CCCCC
Q 036416          223 SLLCQWANALGATVIGTVSTKEKAAQAKD----DGCHH  256 (256)
Q Consensus       223 ~~ai~la~~~ga~Vi~~~~~~~~~~~~~~----~Ga~~  256 (256)
                      ++++|+|+.+|++|++++.+++|++++++    +|+++
T Consensus      1682 ~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~ 1719 (2512)
T 2vz8_A         1682 QAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETC 1719 (2512)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTT
T ss_pred             HHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceE
Confidence            99999999999999999999999999986    67764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.54  E-value=1.2e-14  Score=118.18  Aligned_cols=84  Identities=30%  Similarity=0.407  Sum_probs=68.4

Q ss_pred             CCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          172 NKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       172 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +.++++|+++++++|++++.++.|||+++.+.+++++|++|+|+||+|++|++++|+++..|++|+++++++++.+.+++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            46789999999999999999999999999887899999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 036416          252 DGCH  255 (256)
Q Consensus       252 ~Ga~  255 (256)
                      +|++
T Consensus        82 ~g~~   85 (198)
T 1pqw_A           82 LGVE   85 (198)
T ss_dssp             TCCS
T ss_pred             cCCC
Confidence            9975

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.47  E-value=1.5e-10  Score=104.26  Aligned_cols=127  Identities=20%  Similarity=0.188  Sum_probs=97.9

Q ss_pred             CCCCcccEEEEEEeCCCCCccCCCCEEEEe--------CCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH
Q 036416          127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYA--------GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       127 ~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~--------~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      ...|++.++.|..+|++++++.+|+.++.-        ....|++++|+..+...++.+|+.++.+.++. ..+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            457899999999999999999999987321        11236788888777777888888877766543 334556666


Q ss_pred             HHHHHc---CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhH-HHHHhCCCC
Q 036416          199 LLRRCF---KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKA-AQAKDDGCH  255 (256)
Q Consensus       199 ~l~~~~---~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~-~~~~~~Ga~  255 (256)
                      ++....   .-.+|++|+|+| +|++|.++++.++..|+ +|++++++++|. ++++++|++
T Consensus       154 av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc
Confidence            654322   125899999999 59999999999999999 899999998886 677888863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.65  E-value=0.00017  Score=66.23  Aligned_cols=114  Identities=21%  Similarity=0.070  Sum_probs=75.2

Q ss_pred             CCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC
Q 036416          126 PFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK  205 (256)
Q Consensus       126 p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~  205 (256)
                      |.++ ++..|+|+++|.+|+++.      .+. ..|.+...+..-.+.+.+   . .+   -.++....++|.++....+
T Consensus       205 p~~~-~~i~GvveetgtGVd~l~------a~~-~~Gilv~~~~~vn~sVae---~-~~---r~l~~~~~s~~~g~~r~~~  269 (494)
T 3ce6_A          205 TKIA-ESVKGVTEETTTGVLRLY------QFA-AAGDLAFPAINVNDSVTK---S-KF---DNKYGTRHSLIDGINRGTD  269 (494)
T ss_dssp             HHHH-HHCCCEEECSHHHHHHHH------HHH-HTTCCCSCEEECTTSHHH---H-TT---HHHHHHHHHHHHHHHHHHC
T ss_pred             hhhh-cCeEEEEEEeCCChhHHH------HHH-HcCCEEEecCCccHHHHH---H-HH---hhhhhhhhhhhHHHHhccC
Confidence            3344 789999999999988761      000 012222221111111111   0 00   1122344566666654332


Q ss_pred             -CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          206 -VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       206 -~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                       ..+|++|+|+| .|.+|..+++.++..|++|++++.++.+.+.++++|++
T Consensus       270 ~~l~GktV~IiG-~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          270 ALIGGKKVLICG-YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE
Confidence             67999999999 69999999999999999999999999998888999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.49  E-value=0.00014  Score=64.63  Aligned_cols=47  Identities=28%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++|+|+| +|.+|+.++++|+.+|++|+++++++++.+.++++|++
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~  217 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK  217 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            689999999 69999999999999999999999999999989889974

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.49  E-value=0.00018  Score=64.47  Aligned_cols=47  Identities=30%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +|++|+|+| +|.+|+.++++|+.+|++|+++++++++.+.++++|++
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~  217 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE  217 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCE
Confidence            589999999 59999999999999999999999999999989999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.42  E-value=0.00015  Score=64.03  Aligned_cols=45  Identities=24%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +++|+|+|+ |++|+++++.++.+|++|++++++++|.+.++++|+
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~  211 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG  211 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC
Confidence            489999996 999999999999999999999999999988877654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.35  E-value=0.0003  Score=62.38  Aligned_cols=47  Identities=26%  Similarity=0.253  Sum_probs=43.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++.+|+|+| .|.+|+.+++.++.+|++|+++++++++++.++++|++
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~  229 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQ  229 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            678999999 59999999999999999999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.00035  Score=62.44  Aligned_cols=47  Identities=26%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      ++.+|+|+| .|.+|+.++++++.+|++|++++.++++++.++++|++
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            578999999 59999999999999999999999999999999999873

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.27  E-value=0.00059  Score=60.54  Aligned_cols=47  Identities=26%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga~  255 (256)
                      +|++|+|+|+ |++|+.+++.++..|++|+++++++++.+.+++ +|++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe
Confidence            5899999995 999999999999999999999999999888876 7764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.16  E-value=0.00088  Score=59.16  Aligned_cols=46  Identities=24%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga  254 (256)
                      ++++|+|+|+ |++|+.+++.++..|++|+++++++++.+.+++ +|+
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~  211 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG  211 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc
Confidence            4689999996 999999999999999999999999998887765 775

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.09  E-value=0.0026  Score=52.11  Aligned_cols=47  Identities=19%  Similarity=0.187  Sum_probs=40.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++|++||..| +| .|..++.+++. +.+|++++.+++..+.+++
T Consensus        85 ~~~~~~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~  131 (248)
T 2yvl_A           85 LKLNLNKEKRVLEFG-TG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQK  131 (248)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeC-CC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHH
Confidence            456889999999999 57 69999999998 8899999999988887765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.93  E-value=0.0018  Score=46.60  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=39.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .+.+|+|+|+ |.+|..+++.+...| .+|+++++++++.+.+++.|+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~   50 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGV   50 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCC
Confidence            4578999997 999999999999999 799999999988887776553

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.92  E-value=0.0021  Score=52.41  Aligned_cols=47  Identities=23%  Similarity=0.368  Sum_probs=41.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|||.||+|.+|..+++.+...|++|+++++++++.+.+++.++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCC
Confidence            47899999999999999999999999999999999988877766554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.85  E-value=0.0011  Score=50.83  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC  254 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga  254 (256)
                      ....++++|+|.| +|.+|..+++.++..|.+|+++++++++.+.++ ++|+
T Consensus        14 ~~~~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~   64 (155)
T 2g1u_A           14 SKKQKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSG   64 (155)
T ss_dssp             ---CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCS
T ss_pred             hcccCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCC
Confidence            3456789999999 599999999999999999999999988887766 5664

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.77  E-value=0.0085  Score=53.76  Aligned_cols=59  Identities=29%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             HHHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          195 TAQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       195 ta~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+.++.+..+ .-.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~  264 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF  264 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC
Confidence            34455544433 45899999999 6999999999999999999999998877766766664

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.73  E-value=0.0077  Score=51.27  Aligned_cols=47  Identities=26%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      -.|++|+|+| .|.+|..+++.++..|++|++++++.++.+.++++|+
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~  199 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGM  199 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTS
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC
Confidence            4789999999 6999999999999999999999999888777777775

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.68  E-value=0.0033  Score=49.42  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      +++|+|.| .|.+|..+++.++.. |.+|++++.++++.+.+++.|++
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~   85 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRN   85 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCC
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCC
Confidence            67899999 699999999999998 99999999999999988888863

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.67  E-value=0.0078  Score=50.48  Aligned_cols=48  Identities=21%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+++|++||-.| +|. |..++.+++..  +.+|++++.+++..+.+++
T Consensus       106 ~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          106 MMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            456889999999999 566 99999999986  4699999999888877754

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.63  E-value=0.0082  Score=52.67  Aligned_cols=48  Identities=33%  Similarity=0.401  Sum_probs=42.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      -.|++|.|.| .|.+|+.+++.++..|++|++.+.++++.++++++|++
T Consensus       173 L~GktV~I~G-~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~  220 (355)
T 1c1d_A          173 LDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT  220 (355)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE
Confidence            4799999999 79999999999999999999988887766677778863

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.57  E-value=0.005  Score=52.12  Aligned_cols=46  Identities=26%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      .|+.+||.||++++|.++++.....|++|+++++++++++.+ +++|
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g   74 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG   74 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC
Confidence            689999999999999999999999999999999998887644 5565

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.55  E-value=0.0063  Score=45.72  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..++|+|.| .|.+|..+++.++..|.+|++++.++++.+.+++.|+
T Consensus         6 ~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~   51 (140)
T 3fwz_A            6 ICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGV   51 (140)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTC
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCC
Confidence            357899999 6999999999999999999999999999998888775

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.54  E-value=0.0048  Score=50.79  Aligned_cols=45  Identities=33%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .-.++++|||.||+|++|..+++.+...|++|+++++++++.+.+
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   54 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSL   54 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            446789999999999999999999889999999999998776654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.49  E-value=0.0051  Score=51.67  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=37.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||++++|.++++.+...|++|++++++.++.+.+
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~   70 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKAL   70 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            578999999999999999999888999999999998876654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.47  E-value=0.0056  Score=50.22  Aligned_cols=42  Identities=29%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|++++|.||+|++|..+++.+...|++|+++++++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHH
Confidence            578999999999999999999989999999999998776543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.46  E-value=0.006  Score=51.60  Aligned_cols=43  Identities=33%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++++.+.+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~   57 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAA   57 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999999899999999999988766553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.45  E-value=0.0055  Score=51.65  Aligned_cols=42  Identities=26%  Similarity=0.455  Sum_probs=37.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|.++||.||+|++|..+++.+...|++|+++++++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            478999999999999999998888999999999998776543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.45  E-value=0.0058  Score=50.88  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=37.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|.++||.||+|++|..+++.+...|++|++++++.++.+.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999998888999999999998776543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.39  E-value=0.0024  Score=48.32  Aligned_cols=47  Identities=13%  Similarity=0.102  Sum_probs=39.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      ..+++|+|+| +|.+|..+++.++..|++|+++++++++.+ +++++|+
T Consensus        19 ~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~   66 (144)
T 3oj0_A           19 NGGNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY   66 (144)
T ss_dssp             HCCCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            3489999999 599999999998889999999999988865 4566664

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.39  E-value=0.0052  Score=52.59  Aligned_cols=49  Identities=10%  Similarity=0.017  Sum_probs=43.0

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      .+++++|++||.+| ||+.|+.++.+|+..|++|++++.+++..+.+++.
T Consensus       117 la~l~~g~rVLDIG-cG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          117 LGRFRRGERAVFIG-GGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HTTCCTTCEEEEEC-CCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH
T ss_pred             HcCCCCcCEEEEEC-CCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH
Confidence            46889999999999 78888888888988899999999999988887653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.39  E-value=0.0072  Score=51.51  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      -.|.++||.||+|++|..+++.+...|++|+++++++++.+.+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA   71 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3678999999999999999999999999999999998776543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.38  E-value=0.018  Score=48.74  Aligned_cols=43  Identities=26%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      -+|.+++|.||+|++|.+++..+...|++|+++++++++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHH
Confidence            3688999999999999999999999999999999987776533

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.38  E-value=0.012  Score=53.65  Aligned_cols=56  Identities=29%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             HHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          198 FLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       198 ~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .++.+..+. -.|++|+|.| .|++|..+++.++..|++|++++.++.+...+...|+
T Consensus       253 dgi~r~tg~~L~GKtVvVtG-aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~  309 (488)
T 3ond_A          253 DGLMRATDVMIAGKVAVVAG-YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL  309 (488)
T ss_dssp             HHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCcccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC
Confidence            344343343 4799999999 5899999999999999999999999888777776664

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.36  E-value=0.0059  Score=51.58  Aligned_cols=42  Identities=26%  Similarity=0.281  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   73 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAA   73 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578999999999999999999888999999999998776543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.35  E-value=0.008  Score=50.40  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=36.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   71 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE   71 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence            47899999999999999999988899999999998776543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.34  E-value=0.0088  Score=51.05  Aligned_cols=47  Identities=23%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      -.|++|+|+| .|.+|..+++.++..|++|++.+++.++.+.++++|+
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~  201 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL  201 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC
Confidence            4789999999 6999999999999999999999999888777767775

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.33  E-value=0.007  Score=50.54  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||++++|.++++.+...|++|+++++++++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999987776543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.32  E-value=0.0087  Score=50.05  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   60 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE   60 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999998899999999998776543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.31  E-value=0.0072  Score=50.87  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   71 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV   71 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999998999999999998776543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.31  E-value=0.0085  Score=50.45  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++++.+.+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   67 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRV   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999989999999999998776544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.31  E-value=0.008  Score=50.60  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      -.|+++||.||+|++|.+++..+...|++|+++++++++.+.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   63 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSA   63 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            357899999999999999999888899999999999877554

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.30  E-value=0.009  Score=49.78  Aligned_cols=41  Identities=22%  Similarity=0.208  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   52 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA   52 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999999999999888899999999998776553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.27  E-value=0.0097  Score=44.48  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+|+|.| .|.+|..+++.+...|.+|++++.++++.+.+++.|+
T Consensus         6 ~~~v~I~G-~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~   50 (141)
T 3llv_A            6 RYEYIVIG-SEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGF   50 (141)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCC
Confidence            46799999 5999999999999999999999999999888877664

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.26  E-value=0.0096  Score=49.85  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   60 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE   60 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999999999999999999999999998776543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.25  E-value=0.0096  Score=50.02  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .++++||.||+|++|..+++.+...|++|+++++++++.+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   60 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR   60 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4689999999999999999999899999999999877654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.25  E-value=0.0079  Score=50.45  Aligned_cols=42  Identities=26%  Similarity=0.367  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999998888999999999987765533

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.23  E-value=0.01  Score=48.86  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++++++.+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~   51 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT   51 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4788999999999999999998889999999999876654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.01  Score=50.17  Aligned_cols=42  Identities=26%  Similarity=0.292  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.++||.||++++|.++++.....|++|++++++.++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEV   68 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999989999999999998776544

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.22  E-value=0.0098  Score=50.00  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~   68 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACAD   68 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999999999999998999999999998776543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.22  E-value=0.0091  Score=49.50  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++++.+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   52 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVD   52 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999999999999999999889999999999877654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.21  E-value=0.0086  Score=50.44  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~   69 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAA   69 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999999999999998888999999999997776544

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.16  E-value=0.0092  Score=50.12  Aligned_cols=42  Identities=14%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .++++||.||+|++|.++++.+...|++|++++++.++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQET   68 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            578899999999999999999989999999999998776544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.16  E-value=0.012  Score=49.25  Aligned_cols=41  Identities=24%  Similarity=0.247  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..++..+...|++|+++++++++.+.
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~   70 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE   70 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHH
Confidence            57899999999999999999998899999999998776543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.15  E-value=0.01  Score=49.59  Aligned_cols=46  Identities=28%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.+ +++|
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   72 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG   72 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            578999999999999999999999999999999988776544 3444

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.14  E-value=0.011  Score=49.73  Aligned_cols=40  Identities=10%  Similarity=0.174  Sum_probs=36.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .|+++||.||++++|.++++.....|++|++++++.++.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~   65 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVL   65 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999999999999999999899999999999877654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.13  E-value=0.0082  Score=51.08  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   80 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSS   80 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            57899999999999999999999999999999998776543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.12  E-value=0.005  Score=45.76  Aligned_cols=45  Identities=13%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ++++|+|.|+ |.+|..+++.+...|.+|+++++++++.+.+++.|
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~   49 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA   49 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence            3567999995 99999999999999999999999888777665554

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.09  E-value=0.0074  Score=50.78  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||++++|.++++.+...|++|+++++++++.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   72 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAA   72 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            57899999999999999999998999999999998766443

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.08  E-value=0.011  Score=50.35  Aligned_cols=41  Identities=22%  Similarity=0.331  Sum_probs=36.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~   65 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEE   65 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999998899999999998776543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.08  E-value=0.031  Score=50.21  Aligned_cols=57  Identities=25%  Similarity=0.207  Sum_probs=45.3

Q ss_pred             HHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          197 QFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       197 ~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +.++.+... .-.|.+|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus       198 ldgi~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~  255 (436)
T 3h9u_A          198 VDGIKRATDVMIAGKTACVCG-YGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY  255 (436)
T ss_dssp             HHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCcccCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC
Confidence            334433333 34799999999 7999999999999999999999999877766666664

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.06  E-value=0.0087  Score=50.22  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++.+.
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~   65 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQ   65 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999999999999999998999999999998776543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.06  E-value=0.014  Score=49.47  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|..+++.+...|++|++++++.++.+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   57 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS   57 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999999999999888899999999998776543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.05  E-value=0.014  Score=49.35  Aligned_cols=41  Identities=17%  Similarity=0.290  Sum_probs=36.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|..++..+...|++|+++++++++.+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~   65 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA   65 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999999999999998899999999998776543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.04  E-value=0.036  Score=48.79  Aligned_cols=47  Identities=28%  Similarity=0.412  Sum_probs=40.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      -.|.+|+|.| .|.+|..+++.+...|++|++++.+.++.+ +++++|+
T Consensus       171 L~GktV~V~G-~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga  218 (364)
T 1leh_A          171 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA  218 (364)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCcCEEEEEC-chHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            4789999999 699999999999999999999999888766 4556665

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.00  E-value=0.013  Score=48.59  Aligned_cols=41  Identities=17%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   53 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNE   53 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46889999999999999999988899999999998776543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.00  E-value=0.035  Score=50.02  Aligned_cols=58  Identities=28%  Similarity=0.142  Sum_probs=45.5

Q ss_pred             HHHHHHHHc-CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          196 AQFLLRRCF-KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       196 a~~~l~~~~-~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .+.++.+.. ..-.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc
Confidence            344444433 346899999999 7999999999999999999999988776655555664

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.99  E-value=0.012  Score=49.31  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++.+...+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   70 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEV   70 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHH
Confidence            57899999999999999999998999999999976543333

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.95  E-value=0.017  Score=48.08  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~   55 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQK   55 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHH
Confidence            57899999999999999999888899999999998766543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.92  E-value=0.013  Score=48.94  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .++++||.||+|++|.++++.+...|++|++++++.++.+.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   55 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA   55 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            46899999999999999999998999999999998776543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.91  E-value=0.014  Score=48.23  Aligned_cols=40  Identities=25%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .-.|.++||.||+|++|..+++.+...|++|++++++++.
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   55 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL   55 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            3468899999999999999999988899999999998643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.91  E-value=0.015  Score=48.19  Aligned_cols=42  Identities=33%  Similarity=0.445  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCC-hHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAG-GVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g-~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||+| ++|..+++.+...|++|++++++.++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence            578999999876 899999998888999999999987765443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.89  E-value=0.018  Score=48.25  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.|+++||.||++++|.++++.+...|++|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            36889999999999999999999999999999987

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.85  E-value=0.016  Score=48.37  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||+|++|..+++.+...|++|++++++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999888899999999984

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.84  E-value=0.013  Score=49.40  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=35.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK-EKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~-~~~~  247 (256)
                      .|.++||.||+|++|.++++.+...|++|+++++++ ++.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~   62 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAV   62 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence            478999999999999999998888999999999986 5543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.81  E-value=0.016  Score=49.98  Aligned_cols=42  Identities=19%  Similarity=0.138  Sum_probs=36.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV-STKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~-~~~~~~~~~  249 (256)
                      .|.++||.||+|++|.++++.+...|++|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            478999999999999999999999999999999 887765543

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.81  E-value=0.01  Score=49.51  Aligned_cols=38  Identities=24%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++++++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   63 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA   63 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            46789999999999999999888899999999998655

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.79  E-value=0.018  Score=47.76  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=34.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~  247 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++ ++++.+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~   60 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE   60 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHH
Confidence            4789999999999999999999889999999998 665543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.77  E-value=0.016  Score=47.95  Aligned_cols=43  Identities=12%  Similarity=0.058  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          205 KVEPGHTVLIQAAA--GGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       205 ~~~~g~~VlI~ga~--g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      ....+++|||.||+  +++|..+++.+...|++|++++++++..+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~   54 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD   54 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHH
Confidence            44678999999998  99999999998889999999988754433

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.76  E-value=0.02  Score=48.10  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|+++||.||+|++|.++++.+...|++|++++++.+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   64 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   64 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4789999999999999999999999999999998754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.75  E-value=0.019  Score=48.06  Aligned_cols=40  Identities=23%  Similarity=0.279  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~  247 (256)
                      .|+++||.||+|++|.++++.+...|++|+++++ ++++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~   67 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAAD   67 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHH
Confidence            5789999999999999999999899999999887 444443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.74  E-value=0.023  Score=47.48  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.+...|++|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999998999999999876

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.73  E-value=0.022  Score=47.97  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~  247 (256)
                      .|+++||.||+|++|..+++.+...|++|+++++ .+++.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~   64 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIR   64 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHH
Confidence            4789999999999999999999999999999998 444443

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.69  E-value=0.017  Score=48.59  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .+.++||.||+|++|..+++.+...|++|+++++++++.+.
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~   83 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS   83 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            46889999999999999999888889999998887766543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.62  E-value=0.028  Score=47.29  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=34.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAA  247 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~  247 (256)
                      -.|.++||.||+|++|.++++.+...|++|+++++ ++++.+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~   68 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA   68 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence            46789999999999999999999999999999985 555443

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.57  E-value=0.015  Score=48.73  Aligned_cols=40  Identities=13%  Similarity=0.236  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .-..|++|||.||++++|.++++.+...|++|++++++++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   49 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK   49 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC-
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4567899999999999999999998889999999987654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.57  E-value=0.028  Score=47.67  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.....|++|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            57899999999999999999998999999999876

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=95.54  E-value=0.032  Score=44.23  Aligned_cols=95  Identities=17%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             ccCCCCEEEEeCCCCcceeeEEE-ecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          146 GRTVGDIIAYAGGAMGSYAEEQI-LPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       146 ~~~~Gd~V~~~~~~~G~~a~~~~-v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      .+++|+.+...+    .|.+|.. .+....+.+++++.+..... + ........+..  .++++++||-.| +|. |..
T Consensus         5 ~~~~~~~~~~~p----~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~--~~~~~~~vLDiG-~G~-G~~   74 (205)
T 3grz_A            5 VINLSRHLAIVP----EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIER--AMVKPLTVADVG-TGS-GIL   74 (205)
T ss_dssp             CEEEETTEEEEE----TTCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHH--HCSSCCEEEEET-CTT-SHH
T ss_pred             cEEECCcEEEec----cccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHH--hccCCCEEEEEC-CCC-CHH
Confidence            356677665554    3667766 66677888888876655421 1 11111112222  267899999998 565 888


Q ss_pred             HHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416          225 LCQWANALGA-TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       225 ai~la~~~ga-~Vi~~~~~~~~~~~~~~  251 (256)
                      +..+++ .+. +|++++.+++..+.+++
T Consensus        75 ~~~l~~-~~~~~v~~vD~s~~~~~~a~~  101 (205)
T 3grz_A           75 AIAAHK-LGAKSVLATDISDESMTAAEE  101 (205)
T ss_dssp             HHHHHH-TTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHH-CCCCEEEEEECCHHHHHHHHH
Confidence            888777 455 99999999888777654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.53  E-value=0.027  Score=47.65  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|+++||.||+|++|.++++.+...|++|++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            5789999999999999999999999999999998754

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.52  E-value=0.02  Score=47.98  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .++||.||+|++|.++++.+...|++|+++++++++.+.+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~   61 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQAL   61 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            7899999999999999999988999999999998776544

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.51  E-value=0.025  Score=47.95  Aligned_cols=41  Identities=20%  Similarity=0.104  Sum_probs=34.9

Q ss_pred             CCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAG--GVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g--~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      .|+++||.||+|  ++|.++++.+...|++|++++++++..+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~   71 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKR   71 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            578999999987  99999999888899999999998654433

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.45  E-value=0.017  Score=47.60  Aligned_cols=39  Identities=10%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      +-++++||.||+|++|..+++.+...|++|+++++++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            346899999999999999999999999999999987543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.44  E-value=0.018  Score=48.13  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      .+.++||.||+|++|..++..+...|++|+++++++++.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~   72 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADE   72 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4789999999999999999888888999999998765543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.43  E-value=0.014  Score=48.38  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC---CeEEEEeCChhhHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALG---ATVIGTVSTKEKAA  247 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~g---a~Vi~~~~~~~~~~  247 (256)
                      -.+.++||.||+|++|..+++.+...|   ++|++++++.++.+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~   62 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK   62 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH
Confidence            356799999999999999999988899   89999999866543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.025  Score=47.83  Aligned_cols=42  Identities=24%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~~~~~~~~~~  249 (256)
                      .|+++||.||++++|.+++......|+   +|+.++++.++.+.+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~   76 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEEL   76 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHH
Confidence            478999999999999998887777776   999999998776544

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.33  E-value=0.026  Score=49.24  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .|+++||.||++++|.++++.+...|++|+++++++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            57899999999999999999888899999999987653

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.32  E-value=0.023  Score=46.80  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .+.++||.||+|++|..+++.+...|++|++++++.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchh
Confidence            46789999999999999999888899999999985443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.31  E-value=0.032  Score=47.22  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=34.5

Q ss_pred             CCCCEEEEecCCCh--HHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416          207 EPGHTVLIQAAAGG--VGSLLCQWANALGATVIGTVSTKEKAA  247 (256)
Q Consensus       207 ~~g~~VlI~ga~g~--vG~~ai~la~~~ga~Vi~~~~~~~~~~  247 (256)
                      -.|+++||.||+|+  +|.++++.+...|++|++++++++..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~   71 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKK   71 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            36889999999865  999999999899999999998864433

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.28  E-value=0.039  Score=46.14  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.+...|++|+++++.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999988999999998654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.26  E-value=0.092  Score=43.98  Aligned_cols=45  Identities=29%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~G  253 (256)
                      .|.+++|.|+ |++|.++++.+...|++|+++.++.++.+ +++++|
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~  163 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFA  163 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhh
Confidence            6789999995 99999999999999999999999988864 445554

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.21  E-value=0.029  Score=48.13  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|+++||.||++++|.++++.+...|++|++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            357899999999999999999888899999999875

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.20  E-value=0.037  Score=46.06  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=34.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhhHH
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT-VSTKEKAA  247 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~-~~~~~~~~  247 (256)
                      ...+.++||.||+|++|.++++.+...|++|+++ .+++++.+
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~   65 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAAD   65 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHH
Confidence            3567899999999999999999999999999777 56655544

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.20  E-value=0.034  Score=46.42  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~  247 (256)
                      .|+++||.||++++|.++++.+...|++|++++. ++++.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~   66 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAE   66 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            5789999999999999999888889999988754 444433

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.19  E-value=0.037  Score=47.39  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.+...|++|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999999999999999765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.18  E-value=0.039  Score=47.77  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc-CC-eEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANAL-GA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~-ga-~Vi~~~~~~~~~~~~  249 (256)
                      -.+.+|||.||+|.+|..+++.+... |. +|+++++++.+.+.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~   63 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM   63 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH
Confidence            45789999999999999998888777 98 999999987766544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.08  E-value=0.037  Score=46.47  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             CCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAA--GGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~--g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.++||.||+  |++|..+++.+...|++|++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57899999998  89999999988889999999998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.06  E-value=0.044  Score=46.39  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.....|++|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999998876

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.05  E-value=0.023  Score=47.27  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .++++||.||+|++|.++++.+...|++|++++++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            5789999999999999999999899999999988643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.04  E-value=0.023  Score=46.74  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.++||.||+|++|..+++.+...|++|++++++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   50 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   50 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            5789999999999999999998889999999987644

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.02  E-value=0.028  Score=46.51  Aligned_cols=37  Identities=22%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+.++||.||+|++|.++++.+...|++|++++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4688999999999999999998889999999887643

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.97  E-value=0.044  Score=45.59  Aligned_cols=39  Identities=13%  Similarity=0.337  Sum_probs=32.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV-STKEK  245 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~-~~~~~  245 (256)
                      ..+.++||.||+|++|..+++.+...|++|++++ +..++
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~   62 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDH   62 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHH
Confidence            3578899999999999999999988999999998 44443

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.95  E-value=0.022  Score=47.55  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|+++||.||+|++|.++++.....|++|++++++.+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999998889999999987644

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.93  E-value=0.025  Score=46.55  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV  240 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~  240 (256)
                      ...++++|||.||+|++|..++..+...|++|++++
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~   44 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGC   44 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            345789999999999999999998888999999887

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.90  E-value=0.055  Score=45.06  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|+++||.||++++|.++++.....|++|+++++.
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            57899999999999999999999999999987764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.89  E-value=0.13  Score=43.42  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=36.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      -.|.+++|.|+ |++|.+++..+...|+ +|+++.++.+|.+.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            46889999995 9999999999989999 799999998886643

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=94.85  E-value=0.082  Score=42.13  Aligned_cols=47  Identities=17%  Similarity=0.330  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +|. |..++.+|+. +++|++++.+++..+.+++
T Consensus        49 ~~l~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           49 AALAPRRGELLWDIG-GGS-GSVSVEWCLA-GGRAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHCCCTTCEEEEET-CTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEec-CCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence            345788999999999 565 9999999988 8999999999988877653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.79  E-value=0.032  Score=45.31  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEK  245 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~  245 (256)
                      +.+|||.||+|++|..+++.+...|+  +|+++++++++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            67899999999999999999888999  99999987643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.69  E-value=0.089  Score=38.56  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=36.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga  254 (256)
                      +.+|+|.| +|.+|...++.+...|.+|+++++++++.+.++ ++|.
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~   49 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA   49 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCc
Confidence            35799999 599999999999889999999999988877665 3453

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=94.67  E-value=0.052  Score=46.54  Aligned_cols=45  Identities=27%  Similarity=0.320  Sum_probs=39.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.++ +.++++|+
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCc
Confidence            578999999 7999999999999999999999998766 55667775

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.64  E-value=0.035  Score=47.32  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .-.++.+|||.||+|.+|..+++.+...|.+|++++++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            4578899999999999999999988889999999998654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.61  E-value=0.085  Score=44.37  Aligned_cols=44  Identities=20%  Similarity=0.096  Sum_probs=38.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +.+++|+| +|+.|.+++..+...|.+|+++.++.+|.+.+.++|
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC
Confidence            88999999 599999999999999999999999988876554655

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=94.58  E-value=0.061  Score=48.19  Aligned_cols=42  Identities=24%  Similarity=0.170  Sum_probs=34.3

Q ss_pred             HHcCC-CCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCCh
Q 036416          202 RCFKV-EPGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTK  243 (256)
Q Consensus       202 ~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~  243 (256)
                      ...++ +.|+++||.||++++|++++..+.. .|++|++++++.
T Consensus        53 ~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~   96 (422)
T 3s8m_A           53 ARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEK   96 (422)
T ss_dssp             HTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             hccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            33455 4678899999999999998887777 999999988754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.50  E-value=0.076  Score=44.44  Aligned_cols=44  Identities=14%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             CCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCCh--hhHHHHH
Q 036416          207 EPGHTVLIQAAA--GGVGSLLCQWANALGATVIGTVSTK--EKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~--g~vG~~ai~la~~~ga~Vi~~~~~~--~~~~~~~  250 (256)
                      -.|.++||.||+  +++|..+++.....|++|++++++.  ++.+.++
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~   71 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC   71 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH
Confidence            357899999988  6699999998888999999999876  4444443

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.32  E-value=0.083  Score=43.79  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhhH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV-STKEKA  246 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~-~~~~~~  246 (256)
                      .+.++||.||+|++|..+++.+...|++|++.+ ++.++.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~   64 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGA   64 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence            467899999999999999999999999987655 444443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.27  E-value=0.22  Score=42.84  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC---hhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST---KEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~---~~~~~~~  249 (256)
                      .|.+++|.| +|++|.+++..+...|+ +|+++.++   .+|.+.+
T Consensus       153 ~gk~~lVlG-aGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          153 IGKKMTICG-AGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             cCCEEEEEC-CChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            688999999 49999999999999999 89999998   6665533

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.17  E-value=0.17  Score=42.42  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=35.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+.+++|+|+ |++|.+++..+...|++|+++.++.+|.+.+
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l  158 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKEL  158 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            5789999995 9999999999888999999999998876544

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.14  E-value=0.045  Score=44.49  Aligned_cols=38  Identities=16%  Similarity=0.038  Sum_probs=33.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhH
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKA  246 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~  246 (256)
                      ..+|||.||+|++|..+++.+...| ++|+++++++++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            3679999999999999999999999 7999999987653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.11  E-value=0.039  Score=47.34  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..+.+|||.||+|.+|..+++.+...|.+|+++++.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4667899999999999999999999999999998864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.10  E-value=0.21  Score=42.20  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=36.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      -.|.+++|+| +|++|.+++..+...|+ +|+++.++.+|.+.+
T Consensus       120 ~~~k~vlvlG-aGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          120 IKNNICVVLG-SGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             CTTSEEEEEC-SSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3588999999 59999999999999999 899999998886544

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=94.09  E-value=0.13  Score=45.67  Aligned_cols=42  Identities=21%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             HHcCC-CCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCCh
Q 036416          202 RCFKV-EPGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTK  243 (256)
Q Consensus       202 ~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~  243 (256)
                      ....+ ..|+++||.||++++|++++..+.. .|++|++++.+.
T Consensus        39 ~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~   82 (405)
T 3zu3_A           39 TEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFER   82 (405)
T ss_dssp             HHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             hcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCc
Confidence            33445 5678899999999999998887777 999999887653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.03  E-value=0.24  Score=42.09  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      .+.+|+|+| +|++|.+++..+...|+ +|+++.++.+|.+ +++++|.
T Consensus       140 ~~~~vlVlG-aGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          140 DGKRILVIG-AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCEEEEEC-cHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            678999999 59999999999999998 8999999988864 4456654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=93.83  E-value=0.059  Score=44.58  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=32.5

Q ss_pred             CCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAA--GGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~--g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.++||.||+  +++|..+++.+...|++|++++++.+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            57899999998  89999999888889999999987643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=93.83  E-value=0.17  Score=40.09  Aligned_cols=48  Identities=25%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||.+| +| .|..+..+++..|  .+|++++.+++..+.+++
T Consensus        71 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIG-TG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEEC-CC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            445788999999999 56 6999999999887  799999999888777754

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.82  E-value=0.11  Score=44.51  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      -.|.+|.|+| .|.+|...++.++..|++|++.++++++. .++++|+
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~  185 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINA  185 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTC
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCc
Confidence            3678999999 79999999999999999999999887654 4567775

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=93.77  E-value=0.14  Score=43.42  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +.....+++|++||-+| +|. |..+..+++..|++|++++.+++..+.+++
T Consensus        82 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIG-CGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHTTSCCCTTCEEEEES-CTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEc-ccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            33445778999999999 555 889999998889999999999988877764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=93.74  E-value=0.093  Score=45.55  Aligned_cols=45  Identities=20%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.++ +.++++|+
T Consensus       164 ~g~tvgIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          164 NGKTLGILG-LGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTC
T ss_pred             CcCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            578999999 7999999999999999999999987655 45667775

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.74  E-value=0.29  Score=41.27  Aligned_cols=41  Identities=27%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      .|.+++|+| +|++|.+++..+...|+ +|+++.++.+|.+.+
T Consensus       125 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  166 (281)
T 3o8q_A          125 KGATILLIG-AGGAARGVLKPLLDQQPASITVTNRTFAKAEQL  166 (281)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHH
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence            688999999 59999999998888997 899999998886543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=93.74  E-value=0.2  Score=39.57  Aligned_cols=47  Identities=21%  Similarity=0.157  Sum_probs=39.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +| .|..+..+++. +.+|++++.+++..+.+++
T Consensus        71 ~~l~~~~~~~vLdiG-~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           71 ELLELTPQSRVLEIG-TG-SGYQTAILAHL-VQHVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHH
Confidence            445788999999999 45 58889999988 8899999999988877754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=93.70  E-value=0.15  Score=42.81  Aligned_cols=45  Identities=18%  Similarity=0.057  Sum_probs=37.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH-HhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      .|.+++|.| +|++|.+++..+...|+ +|+++.++.+|.+.+ ++++
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            688999999 59999999998888997 899999998886544 4443

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.69  E-value=0.33  Score=41.67  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC---hhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST---KEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~---~~~~~~  248 (256)
                      .|.+++|.| +|+.|.+++..+...|+ +|+++.++   .+|.+.
T Consensus       147 ~gk~~lVlG-AGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~  190 (312)
T 3t4e_A          147 RGKTMVLLG-AGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVA  190 (312)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHH
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHH
Confidence            588999999 59999999999999999 79999999   666543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.67  E-value=0.16  Score=43.49  Aligned_cols=35  Identities=34%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .+.+|||.||+|.+|..+++.+...|.+|+++++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999998899999999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=93.64  E-value=0.14  Score=41.50  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +| .|..+..+++..+.+|++++.+++..+.+++
T Consensus        85 ~~l~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           85 EIANLKPGMNILEVG-TG-SGWNAALISEIVKTDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHTCCTTCCEEEEC-CT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEe-CC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence            334788999999999 56 8999999999887899999999888777754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=93.63  E-value=0.14  Score=46.67  Aligned_cols=48  Identities=31%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .-.|.+|+|.| .|.+|..+++.++..|++|+++++++.+...+...|+
T Consensus       254 ~l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC
Confidence            45799999999 7999999999999999999999999876544555554

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.59  E-value=0.07  Score=45.59  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .+.+|||.||+|.+|..+++.+...|.+|++++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            567899999999999999998888899999998853

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=93.56  E-value=0.18  Score=42.40  Aligned_cols=50  Identities=26%  Similarity=0.322  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +.....+++|++||-+| +| .|..+..+++..|++|++++.+++..+.+++
T Consensus        64 ~~~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIG-CG-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEee-cc-CcHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            33455789999999999 45 5999999999989999999999888777754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=93.52  E-value=0.25  Score=38.84  Aligned_cols=48  Identities=10%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +| .|..++.+++.. +.+|++++.+++..+.+++
T Consensus        34 ~~l~~~~~~~vLDiG-~G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           34 SKLRLQDDLVMWDIG-AG-SASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHTTCCTTCEEEEET-CT-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEC-CC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            445789999999999 56 599999999886 3699999999988877754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=93.42  E-value=0.14  Score=39.10  Aligned_cols=48  Identities=17%  Similarity=0.299  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +|. |..+..+++.. +++|++++.+++..+.+++
T Consensus        19 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           19 SALAPKPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHCCCTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHhcccCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            344788999999999 564 99999999887 5699999999988877763

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.36  E-value=0.056  Score=46.11  Aligned_cols=39  Identities=13%  Similarity=0.094  Sum_probs=33.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      ...+|||.||+|.+|..+++.+...|.+|+++++++++.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   50 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI   50 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCG
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhh
Confidence            345899999999999999998888999999999875543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.34  E-value=0.16  Score=46.40  Aligned_cols=48  Identities=31%  Similarity=0.262  Sum_probs=40.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .-.|.+|+|.| .|.+|..+++.++..|++|+++++++.+...+...|+
T Consensus       274 ~L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~  321 (494)
T 3d64_A          274 MIAGKIAVVAG-YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY  321 (494)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC
Confidence            35789999999 7999999999999999999999998876534445554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.32  E-value=0.095  Score=44.79  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .+.+|||.||+|.+|..+++.+...|.+|+++++.+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            467899999999999999998888999999998763

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.31  E-value=0.086  Score=46.32  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=39.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++ |++.+++..+.+.++++|+
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~  209 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGA  209 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCc
Confidence            688999999 799999999999999997 9999987666666677764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=93.21  E-value=0.29  Score=41.42  Aligned_cols=58  Identities=19%  Similarity=0.081  Sum_probs=43.2

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      +|+....+...+....---.|.+++|.|+++.+|..++.++...||+|++..+..+.+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L  197 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDL  197 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence            4555555556665543334899999999766689999999999999999887654433

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=93.21  E-value=0.29  Score=39.78  Aligned_cols=48  Identities=35%  Similarity=0.616  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||=.| ||. |..+..+++..|++|++++.+++-.+.+++
T Consensus        30 ~~~~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           30 RVLRMKPGTRILDLG-SGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHTCCCTTCEEEEET-CTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            445788999999999 454 889999999889999999999887776643

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=93.09  E-value=0.12  Score=46.75  Aligned_cols=40  Identities=23%  Similarity=0.166  Sum_probs=33.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHc---CCeEEEEeCChhh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANAL---GATVIGTVSTKEK  245 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~---ga~Vi~~~~~~~~  245 (256)
                      ...+.+|||.||+|.+|..+++-+...   |.+|++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            356889999999999999988777666   8999999987554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.09  E-value=0.14  Score=44.31  Aligned_cols=45  Identities=16%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|+++++++++ +.++++|+
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCc
Confidence            578999999 6999999999999999999999998766 55555554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=93.06  E-value=0.11  Score=45.40  Aligned_cols=46  Identities=24%  Similarity=0.349  Sum_probs=39.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++++.+.+.++++|+
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC
Confidence            588999999 7999999999999999999999987655666666664

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.00  E-value=0.23  Score=42.59  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .+|.|+| .|.+|...+..++..|.  +|+++++++++.+.++++|+
T Consensus        34 ~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            6899999 79999999999999998  99999999999999988886

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=92.98  E-value=0.11  Score=46.11  Aligned_cols=46  Identities=15%  Similarity=0.056  Sum_probs=39.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++..+.+.++++|+
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            688999999 7999999999999999999999987655666666665

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=92.98  E-value=0.3  Score=39.76  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ....++++++||-.| +| .|..+..+++..+++|++++.+++..+.+++..
T Consensus        49 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           49 SDIELNENSKVLDIG-SG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             TTCCCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTC
T ss_pred             HhcCCCCCCEEEEEC-CC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh
Confidence            445678999999999 45 899999999987999999999999888887654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=92.97  E-value=0.32  Score=40.90  Aligned_cols=56  Identities=16%  Similarity=-0.056  Sum_probs=43.5

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      +|++.......+....  -.|.+++|.|+++-+|..++.++...||+|++..+..+.+
T Consensus       132 ~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L  187 (276)
T 3ngx_A          132 VPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDI  187 (276)
T ss_dssp             CCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCH
T ss_pred             CCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccH
Confidence            4566666666776664  6899999999766799999999999999999887643333

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=92.92  E-value=0.075  Score=46.04  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++..+.+..+++|+
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            478999999 7999999999999999999999988655555555554

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=92.91  E-value=0.23  Score=45.19  Aligned_cols=40  Identities=28%  Similarity=0.536  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKE  244 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~  244 (256)
                      .++++.++||.||+|++|..+++.+...|++ |+.+.++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            4678999999999999999988888888995 888888753

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=92.89  E-value=0.19  Score=44.95  Aligned_cols=40  Identities=23%  Similarity=0.216  Sum_probs=31.3

Q ss_pred             HcCCCCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSL--LCQWANALGATVIGTVST  242 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~--ai~la~~~ga~Vi~~~~~  242 (256)
                      ...+..|+++||.||++++|++  .+......|++|++++++
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~   95 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYE   95 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            3456789999999999999998  444444459999998875

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=92.86  E-value=0.49  Score=40.27  Aligned_cols=54  Identities=20%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +|+....+...+....---.|.+++|.|+++-+|..++.++...||+|+++.+.
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            455666666666665434589999999976668999999999999999988863

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=92.86  E-value=0.15  Score=43.98  Aligned_cols=45  Identities=13%  Similarity=0.121  Sum_probs=37.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS-TKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~-~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++ +.++ ..++++|+
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQA  190 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCc
Confidence            578999999 799999999999999999999998 7655 34555564

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=92.82  E-value=0.11  Score=48.95  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .|+++||.||++++|.+++..+...|++|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999999999999999988889999999876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.81  E-value=0.14  Score=44.17  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|++++++.++.+.++++|+
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCc
Confidence            477999999 6999999999999999999999987666665666664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=92.80  E-value=0.36  Score=40.80  Aligned_cols=56  Identities=18%  Similarity=0.022  Sum_probs=41.8

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +|+....+...+....---.|.+++|.|+++-+|..+++++...||+|++..+...
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~  196 (285)
T 3l07_A          141 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT  196 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence            45555666666655533348999999997566899999999999999988765433

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=92.71  E-value=0.14  Score=44.55  Aligned_cols=47  Identities=19%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCChhhHHHHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWAN-ALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~-~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      -.|.+|.|+| .|.+|..+++.++ ..|.+|++.+++.++.+.++++|+
T Consensus       161 l~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~  208 (348)
T 2w2k_A          161 PRGHVLGAVG-LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGA  208 (348)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTC
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCc
Confidence            4688999999 7999999999999 999999999988766655555554

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=92.69  E-value=0.3  Score=44.85  Aligned_cols=39  Identities=31%  Similarity=0.396  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~  243 (256)
                      .++++.++||.||+|++|..++..+...|+ +|+.+.++.
T Consensus       255 ~~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          255 SWQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            357889999999999999999988888899 588888765

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=92.64  E-value=0.18  Score=45.48  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +|.++||.||+|++|..+++.....|++|+.+++++
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~  247 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG  247 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            578999999999999998888888899999988753

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=92.58  E-value=0.083  Score=46.94  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .++.+|||.||+|.+|..++..+...|++|++++++++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            45678999999999999988888777899999998865

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=92.54  E-value=0.41  Score=40.49  Aligned_cols=54  Identities=19%  Similarity=-0.065  Sum_probs=41.8

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +|+....+...|....---.|.+++|.|.++-+|..++.++...||+|+++.+.
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          141 RPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            455666666666655333489999999976679999999999999999988764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.53  E-value=0.23  Score=43.41  Aligned_cols=45  Identities=27%  Similarity=0.418  Sum_probs=38.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++. +.+.+++.|+
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~  203 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGF  203 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCc
Confidence            478999999 79999999999999999999999875 4455666665

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=92.52  E-value=0.15  Score=44.19  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhH
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKA  246 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~  246 (256)
                      +.+|||.||+|.+|..+++.+... |.+|+++++++++.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   62 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL   62 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhh
Confidence            478999999999999999888777 89999999876543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=92.49  E-value=0.17  Score=43.40  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +.+|||.||+|.+|..+++.+...|.+|+++++.+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            56899999999999999998888899999999854

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.42  E-value=0.43  Score=40.13  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .|.+++|.|+ |++|.+++..+...| +|+++.++.++.+.+
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHH
Confidence            5789999995 799999999998899 999999987775543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=92.39  E-value=0.39  Score=39.07  Aligned_cols=49  Identities=27%  Similarity=0.313  Sum_probs=40.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHhC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      ....++++++||-.| +|. |..+..+++..  +.+|++++.+++..+.+++.
T Consensus        90 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            445789999999999 564 99999999986  56999999999888877653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.37  E-value=0.14  Score=44.44  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      .|.+|.|+| .|.+|...++.++..|.+|++.++++++ +.++++|
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g  188 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK  188 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC
Confidence            578999999 6999999999999999999999988765 4445555

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=92.35  E-value=0.16  Score=44.16  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~  244 (256)
                      .+.+|||.||+|.+|..+++.+...| .+|+++++.+.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS   68 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC
Confidence            45789999999999999999988899 99999988643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=92.28  E-value=0.73  Score=37.87  Aligned_cols=71  Identities=21%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             CCeEECCCCCCHHHHhhhchhHHHHH--HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          172 NKVVPVPSSIDPVIAASIMLKGMTAQ--FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       172 ~~~~~ip~~~~~~~aa~l~~~~~ta~--~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      ...+.+++++.+....    ...+..  ..+...  ++++++||-.| +|. |..++.+++ .|++|++++.++...+.+
T Consensus        88 ~~~~~l~p~~~fgtg~----~~tt~~~~~~l~~~--~~~~~~VLDiG-cG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a  158 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGH----HETTRLALKALARH--LRPGDKVLDLG-TGS-GVLAIAAEK-LGGKALGVDIDPMVLPQA  158 (254)
T ss_dssp             SEEEECCCC-----CC----SHHHHHHHHHHHHH--CCTTCEEEEET-CTT-SHHHHHHHH-TTCEEEEEESCGGGHHHH
T ss_pred             ceEEEECCCccccCCC----CHHHHHHHHHHHHh--cCCCCEEEEec-CCC-cHHHHHHHH-hCCeEEEEECCHHHHHHH
Confidence            3456666666554321    122221  233332  67899999999 565 888888777 577999999998887776


Q ss_pred             Hh
Q 036416          250 KD  251 (256)
Q Consensus       250 ~~  251 (256)
                      ++
T Consensus       159 ~~  160 (254)
T 2nxc_A          159 EA  160 (254)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=92.26  E-value=0.16  Score=43.39  Aligned_cols=35  Identities=29%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .+.+|||.||+|.+|..+++.+...|.+|+++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999888889999999875

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=92.21  E-value=0.15  Score=44.25  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+|||.||+|.+|..+++.+...|.+|++++++.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999999999999999988889999999988644

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=92.18  E-value=0.57  Score=37.36  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC------CeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG------ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g------a~Vi~~~~~~~~~~~~~~  251 (256)
                      .++++++||-+| +|. |..+..+++..+      .+|++++.+++..+.+++
T Consensus        77 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVG-SGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEES-CTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEC-CCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            578999999999 555 899999999876      599999999888777754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=92.17  E-value=0.51  Score=39.05  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~G  253 (256)
                      .| +++|+| +|.+|.+++..+...|++|++++++.++.+ +++++|
T Consensus       116 ~~-~v~iiG-~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~  160 (263)
T 2d5c_A          116 KG-PALVLG-AGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG  160 (263)
T ss_dssp             CS-CEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT
T ss_pred             CC-eEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence            56 999999 699999999999889999999999887754 444555

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=92.05  E-value=0.18  Score=44.01  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+.+|||.||+|.+|..+++.+...|.+|+++++++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            3568999999999999999988888999999988644

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.03  E-value=0.54  Score=39.40  Aligned_cols=48  Identities=13%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDG  253 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~G  253 (256)
                      .+..+.+++|+| +|+.|.+++..+...|+ +|+++.++.+|.+ +++++|
T Consensus       115 ~~~~~~~vlvlG-aGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          115 HLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             TCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            344678999999 69999999998889998 7999999988754 445555

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=92.01  E-value=0.23  Score=45.69  Aligned_cols=38  Identities=16%  Similarity=0.088  Sum_probs=31.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEE-eCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGT-VST  242 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~-~~~  242 (256)
                      .++++.++||.||+|++|..+++.+...|++ ++.+ .++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3578899999999999999998888888997 5555 555

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.94  E-value=0.43  Score=39.91  Aligned_cols=45  Identities=27%  Similarity=0.200  Sum_probs=37.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      .|.+|+|+| +|++|.+++..+...|++|+++++++++.+.+ +++|
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g  173 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFP  173 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSC
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcC
Confidence            578999999 69999999999988999999999998876544 3444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=91.93  E-value=0.15  Score=43.93  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~  244 (256)
                      .+.+|||.||+|.+|..+++.+...| .+|+++++.+.
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            35679999999999999999888889 89999987643

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=91.91  E-value=0.18  Score=46.16  Aligned_cols=37  Identities=32%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      +.+|||.||+|.+|..++..+...|.+|+++++++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            6799999999999999999999999999999987543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=91.84  E-value=0.47  Score=38.64  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++|++||-.| +|. |..+..+++..  +.+|++++.+++..+.+++
T Consensus        87 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           87 AYAGISPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            456889999999999 455 99999999985  5699999999888877754

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=91.83  E-value=0.18  Score=43.69  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+|||.||+|.+|..+++.+...|.+|++++++++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999988889999999988643

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=91.78  E-value=0.48  Score=43.29  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      .++||.||+|++|..+++.....|+ +|+.+.++
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~  273 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRR  273 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCC
Confidence            8999999999999999888888899 77777775

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=91.74  E-value=0.49  Score=39.10  Aligned_cols=48  Identities=27%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+++|++||-.| +| .|..+..+++..  +.+|++++.+++..+.+++
T Consensus        93 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           93 HEGDIFPGARVLEAG-AG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEc-cc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            445789999999999 56 899999999875  5699999999888877764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.63  E-value=1  Score=39.74  Aligned_cols=51  Identities=16%  Similarity=0.160  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      ....+.+.+++....--++.+|+|.| +|..|..+++++..+|+ +|++++++
T Consensus       174 V~lAal~~A~~i~g~~l~~~kVVv~G-AGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          174 VVSAAFLNALKLTEKKIEEVKVVVNG-IGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             HHHHHHHHHHHHHTCCTTTCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34444455555444323668999999 59999999999999999 79999987

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=91.44  E-value=0.67  Score=39.96  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=42.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|++|+|...+|..|.+++..|+.+|.+++++..   +..|.+.++.+||+
T Consensus        64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  120 (334)
T 3tbh_A           64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAE  120 (334)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence            3345688999756656899999999999999998665554   36788899999984

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.32  E-value=0.29  Score=40.66  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~  249 (256)
                      .| +++|+| +|+.|.+++..+...|+ +|+++.++.+|.+.+
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            46 999999 59999999999999999 899999998876543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=91.29  E-value=0.53  Score=36.01  Aligned_cols=47  Identities=11%  Similarity=0.058  Sum_probs=38.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+.++++||-.| +|. |..+..+++.. .+|++++.+++..+.+++
T Consensus        27 ~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVG-CGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHCCCTTCEEEEES-CTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEC-CCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHH
Confidence            334788999999999 565 88888888766 899999999888777754

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=91.20  E-value=0.63  Score=39.36  Aligned_cols=58  Identities=17%  Similarity=-0.015  Sum_probs=43.1

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      +|++.......+.....--.|.+|+|.|++.-+|..++.++...||+|++..+..+.+
T Consensus       139 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L  196 (288)
T 1b0a_A          139 RPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL  196 (288)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence            4555555555665543335899999999755689999999999999999988665444

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=91.18  E-value=0.16  Score=43.25  Aligned_cols=36  Identities=28%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-------CeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALG-------ATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~g-------a~Vi~~~~~~  243 (256)
                      .+.+|||.||+|.+|..+++.+...|       .+|++++++.
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~   55 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ   55 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccC
Confidence            45689999999999999998888889       7899988764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=91.16  E-value=0.53  Score=36.61  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=37.3

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+++|++||-.| +|. |..+..+++..+  .+|++++.+++..+.+++
T Consensus        18 ~~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~   65 (197)
T 3eey_A           18 MFVKEGDTVVDAT-CGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTK   65 (197)
T ss_dssp             HHCCTTCEEEESC-CTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             hcCCCCCEEEEcC-CCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            3578999999998 454 889999999864  699999999888777654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.11  E-value=0.5  Score=40.38  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=39.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus        31 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~   75 (320)
T 4dll_A           31 ARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGA   75 (320)
T ss_dssp             CSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCC
Confidence            45899999 6999999999998999999999999999888877664

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.10  E-value=0.42  Score=40.65  Aligned_cols=45  Identities=18%  Similarity=0.030  Sum_probs=40.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      -.+|.|+| .|.+|...+..+...|.+|++.++++++.+.+++.|+
T Consensus        21 m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   65 (310)
T 3doj_A           21 MMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGA   65 (310)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTC
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCC
Confidence            35799999 7999999999998999999999999999888888775

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=90.98  E-value=0.72  Score=36.73  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      .++++++||-.| +| .|..+..+++..|  .+|++++.+++..+.+++
T Consensus        74 ~~~~~~~vLDiG-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVG-SG-SGILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEET-CT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEc-CC-cCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            378999999998 45 4888899998876  589999999888777653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=90.96  E-value=0.29  Score=39.43  Aligned_cols=45  Identities=20%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++||-.| +| .|..++.+++.. +.+|++++.+++..+.+++
T Consensus        51 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           51 KMAAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             hccCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            446789999999 45 799999999987 6799999999988877754

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=90.90  E-value=0.82  Score=39.61  Aligned_cols=54  Identities=22%  Similarity=0.334  Sum_probs=43.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|++.+|...+|..|++++..|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus        79 ~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~  135 (344)
T 3vc3_A           79 EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAE  135 (344)
T ss_dssp             HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCE
Confidence            4456788877677777899999999999999997555543   37788999999985

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=90.88  E-value=0.7  Score=39.33  Aligned_cols=58  Identities=16%  Similarity=0.009  Sum_probs=41.2

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      +|++.......+....---.|.+|+|.|++..+|..++.++...||+|++..+..+.+
T Consensus       145 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L  202 (301)
T 1a4i_A          145 IPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL  202 (301)
T ss_dssp             CCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH
T ss_pred             cCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccH
Confidence            3555555555554442234799999999755789999999999999999887654433

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.82  E-value=0.36  Score=40.66  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA  247 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~  247 (256)
                      .|.+++|+| +|++|.+++..+...|+ +|+++.++.+|.+
T Consensus       116 ~~k~vlvlG-aGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          116 EDAYILILG-AGGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            578999999 59999999999999999 8999999887653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=90.80  E-value=0.35  Score=42.44  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=37.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.. +.+.+++.|+
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEec-CCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCe
Confidence            378999999 79999999999999999999999874 3445556664

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=90.80  E-value=0.59  Score=35.89  Aligned_cols=45  Identities=11%  Similarity=0.041  Sum_probs=37.2

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+++|++||=.| || .|..+..+++. +.+|++++.+++-.+.+++
T Consensus        18 ~~~~~~~~vLDiG-cG-~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           18 EVLDDESIVVDAT-MG-NGNDTAFLAGL-SKKVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             TTCCTTCEEEESC-CT-TSHHHHHHHTT-SSEEEEEESCHHHHHHHHH
T ss_pred             HhCCCCCEEEEEc-CC-CCHHHHHHHHh-CCEEEEEECCHHHHHHHHH
Confidence            4678999999988 44 58889999987 8899999999888777653

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=90.76  E-value=0.26  Score=45.32  Aligned_cols=45  Identities=33%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~G  253 (256)
                      .|.+++|.|| |++|.+++..+...|++|+++.++.++.+.+ +++|
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~  408 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG  408 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC
Confidence            4678999996 8999999999999999999999998776544 4554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=90.75  E-value=0.45  Score=38.10  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC-------CeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG-------ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g-------a~Vi~~~~~~~~~~~~~~  251 (256)
                      .++++++||-+| +|. |..+..+++..+       .+|++++.+++..+.+++
T Consensus        81 ~~~~~~~VLdiG-~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVG-SGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEES-CTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEC-CCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            578999999999 565 999999998776       499999999887777654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=90.69  E-value=0.54  Score=39.01  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=39.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...+++++++||-+| +| .|..+..+++..|++|++++.+++..+.+++
T Consensus        58 ~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVG-CG-WGATMMRAVEKYDVNVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             TTTTCCTTCEEEEET-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEEC-Cc-ccHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            445678999999999 44 4888999998889999999999888777754

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=90.49  E-value=0.49  Score=44.33  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .|++++|.||++++|.++++.+...|++|++.+.
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~  354 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF  354 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeC
Confidence            4678999999999999999999999999999874

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=90.41  E-value=0.69  Score=37.93  Aligned_cols=50  Identities=24%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +.....++++++||-+| +| .|..+..+++..+++|++++.+++..+.+++
T Consensus        53 l~~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVG-CG-IGKPAVRLATARDVRVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHSCCCTTCEEEEES-CT-TSHHHHHHHHHSCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeC-CC-CCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            33456788999999999 44 5888899999889999999999887776653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=90.37  E-value=0.82  Score=39.08  Aligned_cols=48  Identities=29%  Similarity=0.442  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+.+|++||-.| +|. |..++.+++..|  .+|++++.+++..+.+++
T Consensus        99 ~~l~~~~g~~VLDiG-~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           99 SMMDINPGDTVLEAG-SGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeC-CCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            334789999999999 565 888999999876  689999999888777754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=90.37  E-value=1.5  Score=39.13  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEE-EEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVI-GTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi-~~~~  241 (256)
                      .|.+|+|.| .|.+|..+++++...|++|+ +.+.
T Consensus       217 ~gk~vaVqG-~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          217 RGARVVVQG-LGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             cCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            689999999 79999999999999999998 5555

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.30  E-value=0.37  Score=39.78  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~  243 (256)
                      +.+|+|.| +|++|..+++.+...|. +++.++.+.
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46899999 69999999999999998 788888875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.24  E-value=0.43  Score=38.27  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ..+|.|+| +|.+|...+..+...|.+|+++++++++.+.+.+.|
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g   71 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA   71 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence            45799999 799999998888888999999999988777665444

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=90.20  E-value=0.3  Score=40.15  Aligned_cols=45  Identities=24%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      .++++||..| +|. |..+..+++.. |++|++++.+++..+.+++.+
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC
Confidence            6889999999 677 99999999986 789999999999888887654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=90.16  E-value=0.64  Score=36.67  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+.++.+||-.|  .|.|..+..+++. |++|+++|.+++-++.+++
T Consensus        18 l~~~~~~~vLD~G--CG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           18 LNVVPGARVLVPL--CGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HCCCTTCEEEETT--TCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHH
T ss_pred             cccCCCCEEEEeC--CCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            3677899999998  4567788888886 9999999999887777754

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=90.10  E-value=0.33  Score=42.29  Aligned_cols=45  Identities=24%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++..++ ...+++|+
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  211 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGL  211 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCT-THHHHHTC
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcch-hhHhhcCC
Confidence            578999999 7999999999999999999999976543 22345554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=90.03  E-value=1  Score=35.84  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=38.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +|. |..+..+++. +.+|++++.+++..+.+++
T Consensus        64 ~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~  110 (231)
T 1vbf_A           64 DELDLHKGQKVLEIG-TGI-GYYTALIAEI-VDKVVSVEINEKMYNYASK  110 (231)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEc-CCC-CHHHHHHHHH-cCEEEEEeCCHHHHHHHHH
Confidence            445788999999999 564 8888888886 4899999999988887765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=89.96  E-value=0.89  Score=38.62  Aligned_cols=48  Identities=19%  Similarity=0.242  Sum_probs=38.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+++|++||-+| +|. |..+..+++..+  .+|++++.+++..+.+++
T Consensus        69 ~~l~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            445789999999999 565 888899998753  469999999988877754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=89.73  E-value=0.54  Score=40.58  Aligned_cols=45  Identities=22%  Similarity=0.225  Sum_probs=37.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga  254 (256)
                      +.+|.|+| .|.+|.+.+..++..|.+|++.++++++ .+.+++.|+
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~   61 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL   61 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEEC-chHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCC
Confidence            35799999 6999999999999999999999988655 667777775

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=89.69  E-value=0.45  Score=38.99  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++||++||=.|  .+.|..+..+|+..|.  +|++++.+++..+.+++
T Consensus        73 l~ikpG~~VldlG--~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~  120 (233)
T 4df3_A           73 LPVKEGDRILYLG--IASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT  120 (233)
T ss_dssp             CCCCTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH
T ss_pred             cCCCCCCEEEEec--CcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            4789999999999  5668899999999875  79999999888777654

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=89.56  E-value=1.5  Score=37.05  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=41.5

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|++|+..+ +|..|.+++..|+..|.+++++..   ++.|.+.++.+||+
T Consensus        56 g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~  109 (303)
T 2v03_A           56 GEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAE  109 (303)
T ss_dssp             TCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence            4467788887777 799999999999999998666654   46788999999984

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.50  E-value=0.94  Score=34.99  Aligned_cols=38  Identities=21%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC----------CeEEEEeCChh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG----------ATVIGTVSTKE  244 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g----------a~Vi~~~~~~~  244 (256)
                      .+++|++||-.| +|+ |..+..+++..|          .+|++++.++.
T Consensus        19 ~~~~~~~vLDlG-cG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           19 ILRPGLRVLDCG-AAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCCTTCEEEEET-CCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCCEEEEeC-CCC-CHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            468999999999 677 999999999976          68999998763

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=89.47  E-value=0.8  Score=36.78  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++++||-.| +|. |..+..+++..| .+|++++.+++..+.+++
T Consensus        70 ~~~~~~~~VLDlG-cG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           70 MPIKRDSKILYLG-ASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCTTCEEEEES-CCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEEEc-ccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            4578899999999 565 999999999887 689999999887776654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=89.40  E-value=0.73  Score=44.62  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHH-HcCCe-EEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWAN-ALGAT-VIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~-~~ga~-Vi~~~~~  242 (256)
                      +.++.++||.|++|++|..+++... ..|++ |+.+.++
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~  565 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRR  565 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccC
Confidence            3578999999999999999888776 78995 8888887

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=89.40  E-value=0.62  Score=41.23  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             CCCCCEEEEecCCChHHHHH-HHHHHHcCCeEEEEeCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLL-CQWANALGATVIGTVST  242 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~a-i~la~~~ga~Vi~~~~~  242 (256)
                      ...++++||.||++++|+++ +.+|...|+.++++...
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~   84 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFE   84 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecC
Confidence            45678999999999999974 56666789998888754

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=89.33  E-value=1.4  Score=37.94  Aligned_cols=52  Identities=23%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ...+++|++|+..+ +|..|.+++..|+.+|.+++++..   ++.|++.++.+||+
T Consensus        72 ~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  126 (343)
T 2pqm_A           72 DGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE  126 (343)
T ss_dssp             HTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             cCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence            34567888777776 699999999999999997666653   46788999999984

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.07  E-value=1.3  Score=39.09  Aligned_cols=48  Identities=17%  Similarity=0.061  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          194 MTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       194 ~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      ..-+.+++....--+..+|+|.| +|..|..+++++..+|+ +|+++|+.
T Consensus       173 Aall~al~l~g~~l~d~kVVi~G-AGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          173 AAIFNSLKLLKKSLDEVSIVVNG-GGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHTTTCCTTSCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCccEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            33344554333323456899999 59999999999999999 89999875

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=89.01  E-value=1.1  Score=40.28  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.|.+|+|.| .|.||..+++.+...|++|++++.
T Consensus       233 l~Gk~vaVQG-~GnVG~~aa~~L~e~GakvVavsD  266 (450)
T 4fcc_A          233 FEGMRVSVSG-SGNVAQYAIEKAMEFGARVITASD  266 (450)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCEEEEeC-CChHHHHHHHHHHhcCCeEEEEec
Confidence            3689999999 799999999999999999988764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=88.97  E-value=0.97  Score=39.42  Aligned_cols=45  Identities=9%  Similarity=0.085  Sum_probs=40.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..+|.|+| .|.+|...+..+...|.+|++.++++++.+.+.+.|+
T Consensus        22 ~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~   66 (358)
T 4e21_A           22 SMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGI   66 (358)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCC
Confidence            46899999 7999999999999999999999999999888887765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.93  E-value=0.87  Score=38.36  Aligned_cols=39  Identities=28%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+|.|+| +|.+|...++.+...|.+|+++++++++.+.+
T Consensus        16 ~~I~VIG-~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIG-GGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            5799999 59999987777777899999999998876653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=88.88  E-value=0.63  Score=39.43  Aligned_cols=44  Identities=23%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .+|.|+| +|.+|...+..+...|.+|+++++++++.+.+++.|+
T Consensus        31 ~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCC
Confidence            5799999 6999999888888889999999999888887777664

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=88.76  E-value=1.3  Score=34.67  Aligned_cols=48  Identities=21%  Similarity=0.114  Sum_probs=39.2

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ...+.++.+||-.| +| .|..+..+++. |++|++++.+++-.+.+++.|
T Consensus        41 l~~~~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~   88 (218)
T 3ou2_A           41 LRAGNIRGDVLELA-SG-TGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHG   88 (218)
T ss_dssp             HTTTTSCSEEEEES-CT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGC
T ss_pred             HhcCCCCCeEEEEC-CC-CCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcC
Confidence            33578889999998 34 48888888887 889999999998888887755

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=88.71  E-value=0.39  Score=40.92  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~  242 (256)
                      .+.+|||.||+|.+|..+++.+...|  .+|++.++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            46789999999999999999888888  678887754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=88.67  E-value=1.1  Score=37.88  Aligned_cols=44  Identities=18%  Similarity=0.266  Sum_probs=37.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ++++++||=.| | |.|..+..+++..|++|++++.+++..+.+++
T Consensus       115 ~~~~~~vLDiG-c-G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~  158 (312)
T 3vc1_A          115 AGPDDTLVDAG-C-GRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR  158 (312)
T ss_dssp             CCTTCEEEEES-C-TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEec-C-CCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            78999999998 3 45888999998889999999999888777654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=88.60  E-value=0.48  Score=40.91  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=33.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA  246 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~  246 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.++.
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence            478999999 79999999999999999999999876543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.46  E-value=0.42  Score=41.28  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (331)
T 1xdw_A          145 RNCTVGVVG-LGRIGRVAAQIFHGMGATVIGEDVFEI  180 (331)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            467899999 799999999999999999999998654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=88.37  E-value=1.1  Score=37.16  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+++|++||=.|  .|.|..++.+++. |++|++++.+++-++.+++
T Consensus        39 ~~l~l~~g~~VLDlG--cGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~   85 (261)
T 3iv6_A           39 FLENIVPGSTVAVIG--ASTRFLIEKALER-GASVTVFDFSQRMCDDLAE   85 (261)
T ss_dssp             HTTTCCTTCEEEEEC--TTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCcCEEEEEe--CcchHHHHHHHhc-CCEEEEEECCHHHHHHHHH
Confidence            445788999999998  4678888888874 8899999999988888765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=88.36  E-value=1.1  Score=36.35  Aligned_cols=48  Identities=8%  Similarity=-0.001  Sum_probs=39.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +| .|..+..+++..+.+|++++.+++..+.+++
T Consensus        40 ~l~~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~   87 (257)
T 3f4k_A           40 FINELTDDAKIADIG-CG-TGGQTLFLADYVKGQITGIDLFPDFIEIFNE   87 (257)
T ss_dssp             TSCCCCTTCEEEEET-CT-TSHHHHHHHHHCCSEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCeEEEeC-CC-CCHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            334678999999999 44 5999999999988899999999887776643

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.30  E-value=0.44  Score=41.20  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       144 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~  179 (333)
T 1dxy_A          144 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM  179 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            578999999 799999999999999999999998654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=88.19  E-value=1.3  Score=38.02  Aligned_cols=54  Identities=17%  Similarity=0.049  Sum_probs=38.9

Q ss_pred             hchhHHHHHHHHHHH--------cC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          189 IMLKGMTAQFLLRRC--------FK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       189 l~~~~~ta~~~l~~~--------~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      +|+....+...+...        .+ --.|.+|+|.|+..-+|..+++++...|++|++++++
T Consensus       148 ~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          148 LPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            455555565555552        12 2378999999953357999999999999999988654

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=88.08  E-value=1.7  Score=36.96  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|++|+..+ +|..|.+++..|+.+|.+++++..   ++.|++.++.+||+
T Consensus        57 g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  110 (316)
T 1y7l_A           57 GTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVN  110 (316)
T ss_dssp             TSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence            3456777776666 799999999999999997666653   46788999999984

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=88.01  E-value=0.75  Score=40.94  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .+-+|++|+|.| .|.+|...++.|+.+|.+|++++..+
T Consensus        31 ~~~~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           31 PILPGAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            366899999999 59999999999999999999998653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=87.99  E-value=1.3  Score=35.20  Aligned_cols=46  Identities=15%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+++|++||=.| +|..|..++.+++..+.+|++++.+++..+.+++
T Consensus        52 ~~~~~~~vLDlG-~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~   97 (230)
T 3evz_A           52 FLRGGEVALEIG-TGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR   97 (230)
T ss_dssp             TCCSSCEEEEEC-CTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_pred             hcCCCCEEEEcC-CCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence            568899999998 5757888888888778899999999887777653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=87.99  E-value=0.64  Score=40.40  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++..+
T Consensus       172 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~  208 (345)
T 4g2n_A          172 TGRRLGIFG-MGRIGRAIATRARGFGLAIHYHNRTRLS  208 (345)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             CCCEEEEEE-eChhHHHHHHHHHHCCCEEEEECCCCcc
Confidence            468999999 7999999999999999999999987533

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.94  E-value=0.64  Score=42.14  Aligned_cols=42  Identities=21%  Similarity=0.129  Sum_probs=34.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+.+|+|+|+ |++|..++..+... |.+|++++++.++.+.+.
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la   64 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALA   64 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            4578999995 99999998888877 679999999988876553

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=87.93  E-value=1.9  Score=36.76  Aligned_cols=54  Identities=28%  Similarity=0.316  Sum_probs=41.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|+..+|...+|..|.+++..|+.+|.+++++..   ++.|++.++.+||+
T Consensus        59 ~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  115 (322)
T 1z7w_A           59 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVE  115 (322)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence            3445677754555555899999999999999998666653   46788999999984

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=87.92  E-value=0.96  Score=38.51  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=35.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ...+|.|+| +|.+|.+.+..+...|.+|+.+ ..+++.+.+++.|
T Consensus        18 ~~~kI~IiG-aGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g   61 (318)
T 3hwr_A           18 QGMKVAIMG-AGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATG   61 (318)
T ss_dssp             --CEEEEES-CSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHC
T ss_pred             cCCcEEEEC-cCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCC
Confidence            346799999 6999999888888889999999 7788888777655

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.87  E-value=0.73  Score=40.32  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .+.+|.+|+|.| .|.+|..+++.|+.+|.+|++++..+
T Consensus        10 ~~~~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           10 IILPGKTIGIIG-GGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            456899999999 59999999999999999999998653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=87.86  E-value=0.63  Score=40.07  Aligned_cols=36  Identities=39%  Similarity=0.572  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++++
T Consensus       136 ~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            478999999 799999999999999999999998654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=87.85  E-value=0.55  Score=39.79  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  156 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSV  156 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCcEEEEEecccc
Confidence            478999999 799999999999999999999998754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=87.72  E-value=1.3  Score=37.24  Aligned_cols=58  Identities=21%  Similarity=0.072  Sum_probs=41.3

Q ss_pred             hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhH
Q 036416          189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKA  246 (256)
Q Consensus       189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~  246 (256)
                      +|+....+...+....---.|.+++|.|++.-+|..+++++...  |++|++..+..+.+
T Consensus       138 ~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L  197 (281)
T 2c2x_A          138 LPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDL  197 (281)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCH
T ss_pred             CCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHH
Confidence            35555555555555432347999999996556799999999999  89999887654433

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=87.53  E-value=2.1  Score=38.29  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=41.1

Q ss_pred             HHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHH
Q 036416          196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAK  250 (256)
Q Consensus       196 a~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~  250 (256)
                      .+..+....++++|++|+=+|  .|+|..++++|+..|+. |++++.+++-.+.++
T Consensus       161 ~i~~il~~l~l~~gd~VLDLG--CGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr  214 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE  214 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEES--CTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            333444566899999998888  67899999999989985 999999976554443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.48  E-value=0.46  Score=40.10  Aligned_cols=44  Identities=11%  Similarity=0.050  Sum_probs=38.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .+|.|+| .|.+|...+..+...|.+|++.++++++.+.+++.|+
T Consensus        16 ~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~   59 (296)
T 3qha_A           16 LKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGA   59 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTC
T ss_pred             CeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCC
Confidence            5799999 7999999998888889999999999999888887775

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=87.39  E-value=2  Score=36.72  Aligned_cols=53  Identities=23%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....++++++|+... +|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        66 ~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  121 (325)
T 3dwg_A           66 ADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQ  121 (325)
T ss_dssp             HTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCE
T ss_pred             HcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCE
Confidence            334567888877765 799999999999999997665553   36788889999974

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=87.37  E-value=1.5  Score=36.40  Aligned_cols=45  Identities=11%  Similarity=0.063  Sum_probs=38.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+.++.+||-+| + |.|..+..+++..|++|++++.++...+.+++
T Consensus        79 ~~~~~~~vLDiG-c-G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  123 (297)
T 2o57_A           79 VLQRQAKGLDLG-A-GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE  123 (297)
T ss_dssp             CCCTTCEEEEET-C-TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeC-C-CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence            778999999998 4 47888899998889999999999887766653

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=87.35  E-value=3  Score=37.37  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|.| .|.||..+++++...|++|+++..+
T Consensus       234 ~g~~vaVqG-fGnVG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          234 EGARVAIQG-FGNVGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCEEEEec-cCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            689999999 7999999999999999999855543

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=87.31  E-value=2.6  Score=35.71  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=40.5

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|++|+. +.+|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        62 g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~  115 (313)
T 2q3b_A           62 GLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAE  115 (313)
T ss_dssp             TCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCE
Confidence            34567777666 56899999999999999998666654   46788899999984

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=87.19  E-value=1  Score=38.49  Aligned_cols=44  Identities=20%  Similarity=0.188  Sum_probs=37.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      ..+|.|+| +|.+|.+.+..+...|.+|+++++++++.+.+++.|
T Consensus        14 ~~kI~iIG-~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           14 EMRFFVLG-AGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHS
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC
Confidence            45799999 699999988888788999999999988888777655

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=87.18  E-value=2.1  Score=38.36  Aligned_cols=54  Identities=26%  Similarity=0.320  Sum_probs=42.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|...+|...+|..|.+++..|+.+|.+.+++..   ++.|.+.++.+||+
T Consensus       167 ~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAe  223 (430)
T 4aec_A          167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAE  223 (430)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCE
Confidence            3445778866666666899999999999999998665554   36788899999984

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=87.11  E-value=0.79  Score=37.01  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +..++++||-+| +| .|..+..+++..  +.+|++++.+++..+.+++
T Consensus        57 ~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  103 (239)
T 2hnk_A           57 KISGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARK  103 (239)
T ss_dssp             HHHTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhhCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            446789999999 45 699999999987  5799999999888777654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=87.10  E-value=0.72  Score=39.42  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       143 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~  178 (311)
T 2cuk_A          143 QGLTLGLVG-MGRIGQAVAKRALAFGMRVVYHARTPK  178 (311)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEE-ECHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            578999999 799999999999999999999998754

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=87.04  E-value=2.9  Score=37.45  Aligned_cols=53  Identities=25%  Similarity=0.285  Sum_probs=42.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|++|+... +|..|.+++..|+.+|.+++++..   +..|++.++.+||+
T Consensus       154 ~~G~l~~g~tVV~aS-sGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAe  209 (435)
T 1jbq_A          154 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAE  209 (435)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCEEEEeC-CCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCE
Confidence            345577888777666 799999999999999998776664   46788999999984

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=87.04  E-value=1.1  Score=37.04  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHc---CCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANAL---GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~---ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +++|.+||=.|  .|.|..+..+++..   |++|++++.+++-++.+++
T Consensus        68 ~~~~~~vLDlG--cGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~  114 (261)
T 4gek_A           68 VQPGTQVYDLG--CSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRR  114 (261)
T ss_dssp             CCTTCEEEEET--CTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEe--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHH
Confidence            78999999998  56788888888864   6799999999887776653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.04  E-value=1.4  Score=36.00  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .+.+|.|+| +|.+|...+..+...|.+|++.++++++
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            467899999 7999999999998899999999999876

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=86.99  E-value=0.29  Score=44.56  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +..+|||.||+|.+|..+++.+...|.+|+++++++.
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~  185 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  185 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSS
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCC
Confidence            4568999999999999988888777889999998765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.89  E-value=1  Score=36.56  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|||.| .|.+|...++.+...|++|++++..
T Consensus        30 ~gk~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVG-GGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCC
Confidence            578899999 5999999999999999999999875

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=86.89  E-value=0.59  Score=44.03  Aligned_cols=38  Identities=21%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~  245 (256)
                      .+.+|||.||+|.+|..+++.+... |.+|+++++++++
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~  352 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA  352 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTT
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchh
Confidence            4678999999999999998877777 8899999987543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=86.86  E-value=1.6  Score=33.24  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .....+++++||-.| +| .|..+..+++. +.++++++.+++..+.+++
T Consensus        46 ~~~~~~~~~~vLdiG-~G-~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~   92 (194)
T 1dus_A           46 ENVVVDKDDDILDLG-CG-YGVIGIALADE-VKSTTMADINRRAIKLAKE   92 (194)
T ss_dssp             HHCCCCTTCEEEEET-CT-TSHHHHHHGGG-SSEEEEEESCHHHHHHHHH
T ss_pred             HHcccCCCCeEEEeC-CC-CCHHHHHHHHc-CCeEEEEECCHHHHHHHHH
Confidence            445677899999998 44 68888888887 8899999999887777654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=86.80  E-value=0.78  Score=36.54  Aligned_cols=45  Identities=13%  Similarity=0.051  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +..++++||-.| +| .|..++.+++..  +.+|++++.+++..+.+++
T Consensus        66 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  112 (229)
T 2avd_A           66 RLIQAKKALDLG-TF-TGYSALALALALPADGRVVTCEVDAQPPELGRP  112 (229)
T ss_dssp             HHTTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH
T ss_pred             HhcCCCEEEEEc-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            456788999999 45 899999999876  5699999999888777654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=86.78  E-value=1.2  Score=38.84  Aligned_cols=34  Identities=15%  Similarity=-0.034  Sum_probs=29.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .-.|+|+| +|..|++++..+...|.+|+++++.+
T Consensus        23 ~~dV~IVG-aG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           23 HMKAIVIG-AGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34699999 59999999999999999999999764

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=86.70  E-value=2  Score=38.68  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .|.+|.|.| .|.+|..+++++...|++|+++..
T Consensus       229 ~g~~v~VqG-~GnVG~~~a~~L~~~GakvVavsD  261 (449)
T 1bgv_A          229 VGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG  261 (449)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999 699999999999999999887544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=86.48  E-value=1.4  Score=37.36  Aligned_cols=44  Identities=14%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC--hhhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST--KEKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~--~~~~~~~~~~Ga  254 (256)
                      .+|.|+| .|.+|...++.+...|. +|++.+++  +++.+.+++.|+
T Consensus        25 ~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~   71 (312)
T 3qsg_A           25 MKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGV   71 (312)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCC
Confidence            5799999 69999999998888899 99999996  577888888775

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=86.46  E-value=1.4  Score=39.88  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      +|.+|+|.| .|.+|..+++.+...|++|+++..
T Consensus       251 ~g~~vaVqG-~GnVG~~~a~~L~~~GakvVavsD  283 (470)
T 2bma_A          251 EKQTAVVSG-SGNVALYCVQKLLHLNVKVLTLSD  283 (470)
T ss_dssp             GGCEEEEEC-SSHHHHHHHHHHHHTTCEECEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEEe
Confidence            678999999 699999999999999999985554

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=86.39  E-value=0.78  Score=39.84  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       147 ~gktvgIiG-lG~IG~~vA~~l~~~G~~V~~~d~~~~  182 (343)
T 2yq5_A          147 YNLTVGLIG-VGHIGSAVAEIFSAMGAKVIAYDVAYN  182 (343)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCeEEEEe-cCHHHHHHHHHHhhCCCEEEEECCChh
Confidence            478999999 799999999999999999999998754

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=86.31  E-value=2.6  Score=35.61  Aligned_cols=51  Identities=24%  Similarity=0.311  Sum_probs=40.0

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|++|+. +.+|..|.+++..|+.+|.+.+++..   ++.|++.++.+||+
T Consensus        60 g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  113 (308)
T 2egu_A           60 GKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAE  113 (308)
T ss_dssp             TCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            34567776655 55899999999999999998666553   46788999999984

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=86.03  E-value=3.5  Score=32.98  Aligned_cols=46  Identities=17%  Similarity=0.063  Sum_probs=36.9

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+.+++.+||=.|  .+.|..++.+|+..  +++|++++.+++..+.+++
T Consensus        52 ~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~   99 (221)
T 3dr5_A           52 TNGNGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA   99 (221)
T ss_dssp             SCCTTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH
T ss_pred             hCCCCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            3445566999888  67899999999986  6799999999988776653

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=85.92  E-value=1  Score=41.02  Aligned_cols=46  Identities=13%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHH-HHHHHHHcCCeEEEEeCChh-hHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSL-LCQWANALGATVIGTVSTKE-KAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~-ai~la~~~ga~Vi~~~~~~~-~~~~~~~~Ga  254 (256)
                      ...+|+|+| .|+.|+. ++++++..|++|.+.|..+. ..+.+++.|+
T Consensus        21 ~~~~v~viG-iG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi   68 (494)
T 4hv4_A           21 RVRHIHFVG-IGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGA   68 (494)
T ss_dssp             -CCEEEEET-TTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred             cCCEEEEEE-EcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCC
Confidence            457899999 6999996 79999999999999997533 3456777775

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=85.88  E-value=0.66  Score=39.79  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++++
T Consensus       138 ~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            478999999 799999999999999999999987654

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=85.73  E-value=1.2  Score=49.36  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             CCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          207 EPGHTVLIQAAAGG-VGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       207 ~~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      -.|+++||.||+++ +|.++++.....|++|++++++.++
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDD 2173 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            46899999999999 9999999999999999999987554

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=85.60  E-value=1.7  Score=39.83  Aligned_cols=46  Identities=28%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             CCCEEEEecCCChHHHH-HHHHHHHcCCeEEEEeCCh--hhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSL-LCQWANALGATVIGTVSTK--EKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~-ai~la~~~ga~Vi~~~~~~--~~~~~~~~~Ga  254 (256)
                      .+.+|.++| .|++|+. ++++++..|++|.+.|..+  ...+.+++.|+
T Consensus        18 ~~~~i~~iG-iGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi   66 (524)
T 3hn7_A           18 QGMHIHILG-ICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGV   66 (524)
T ss_dssp             -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTC
T ss_pred             cCCEEEEEE-ecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC
Confidence            567899999 6999996 5888999999999999863  34566777775

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=85.60  E-value=1.3  Score=46.71  Aligned_cols=39  Identities=28%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEE-eCChhhH
Q 036416          208 PGHTVLIQAAAGG-VGSLLCQWANALGATVIGT-VSTKEKA  246 (256)
Q Consensus       208 ~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~-~~~~~~~  246 (256)
                      .|+++||.||+++ +|..++..+...|++|+++ .++.++.
T Consensus       674 ~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l  714 (1887)
T 2uv8_A          674 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV  714 (1887)
T ss_dssp             TTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHH
Confidence            5789999999998 9999999888899999998 4555444

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=85.57  E-value=0.95  Score=38.96  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++++
T Consensus       139 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          139 KGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            478999999 79999999999999999999998764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=85.56  E-value=0.82  Score=36.89  Aligned_cols=45  Identities=20%  Similarity=0.087  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++||-+| +| .|..++.+++..  +.+|++++.+++..+.+++
T Consensus        69 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~  115 (232)
T 3cbg_A           69 SLTGAKQVLEIG-VF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKK  115 (232)
T ss_dssp             HHHTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCEEEEec-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            345678999999 44 899999999987  5699999999888777754

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=85.50  E-value=1.3  Score=39.04  Aligned_cols=36  Identities=19%  Similarity=0.125  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +..+++|+| +|.++.+++++++.+|++|++++..++
T Consensus       203 P~~rL~IfG-AGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          203 PRPRMLVFG-AIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCCEEEEEC-CSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            667899999 599999999999999999999997643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=85.43  E-value=2  Score=32.95  Aligned_cols=47  Identities=19%  Similarity=0.039  Sum_probs=36.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ......++++||-.| +| .|..+..+++. |+++++++.+++..+.+++
T Consensus        26 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~   72 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLG-CG-NGRNSLYLAAN-GYDVDAWDKNAMSIANVER   72 (199)
T ss_dssp             HHTTTSCSCEEEEET-CT-TSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             HHhhccCCCeEEEEc-CC-CCHHHHHHHHC-CCeEEEEECCHHHHHHHHH
Confidence            334566788999998 44 68888888876 8899999999887776654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=85.32  E-value=1.7  Score=38.77  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +|.+|+|.| .|.||..+++++...|++|+++..+.
T Consensus       211 ~g~~vaVqG-~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          211 EDAKIAVQG-FGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             GGSCEEEEC-CSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             cCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            578999999 79999999999999999999655544

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=85.01  E-value=1.7  Score=38.71  Aligned_cols=34  Identities=32%  Similarity=0.580  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|.| .|.+|..+++++...|++|+++..+
T Consensus       220 ~g~~vaVqG-~GnVG~~aa~~l~e~GakVVavsD~  253 (424)
T 3k92_A          220 QNARIIIQG-FGNAGSFLAKFMHDAGAKVIGISDA  253 (424)
T ss_dssp             GGCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             ccCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence            688999999 6999999999999999998755543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=84.98  E-value=1.4  Score=35.92  Aligned_cols=45  Identities=11%  Similarity=0.000  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .++++++||=+| +| .|..+..+++.-+++|++++.+++..+.+++
T Consensus        43 ~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~   87 (267)
T 3kkz_A           43 NLTEKSLIADIG-CG-TGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR   87 (267)
T ss_dssp             CCCTTCEEEEET-CT-TCHHHHHHHTTCSSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEeC-CC-CCHHHHHHHhccCCEEEEEeCCHHHHHHHHH
Confidence            478999999999 44 6889999998866699999999887776643

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=84.96  E-value=1.2  Score=40.47  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=29.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV  240 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~  240 (256)
                      .|.+|+|.| .|.||..+++++...|++|+++.
T Consensus       243 ~g~tVaVQG-~GNVG~~aa~~L~e~GakVVavs  274 (501)
T 3mw9_A          243 GDKTFVVQG-FGNVGLHSMRYLHRFGAKCITVG  274 (501)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence            689999999 79999999999999999998864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=84.88  E-value=0.71  Score=40.84  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~~~~  243 (256)
                      +.-+|+|+|+.|-+|+.|++.|+.+|+   .|.+.+.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            456799999779999999999999998   898888764

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=84.76  E-value=1.4  Score=30.82  Aligned_cols=42  Identities=36%  Similarity=0.544  Sum_probs=27.1

Q ss_pred             cEEEEEEeCCCCC---------ccCCCCEEEEeCCCCcce-----eeEEEecCCCeE
Q 036416          133 AVGEVVAVGPGLT---------GRTVGDIIAYAGGAMGSY-----AEEQILPANKVV  175 (256)
Q Consensus       133 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~~~~G~~-----a~~~~v~~~~~~  175 (256)
                      ..|+|+++|++..         .+++||+|..... .|.-     .+|+.+.++.++
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky-~Gtevk~dg~ey~i~re~DIL   91 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQY-AGSSYKSEGVEYKVLREDDIL   91 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEECTT-CSEEEEETTEEEEEEEGGGEE
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEECCc-CCeEEEECCEEEEEEEHHHEE
Confidence            4799999999753         4899999976432 2211     345555554443

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=84.60  E-value=2.9  Score=37.23  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~  241 (256)
                      .|.+|.|.| .|.+|..++++++. .|++|+++..
T Consensus       211 ~gktvgI~G-~G~VG~~vA~~l~~~~G~kVv~~sD  244 (419)
T 1gtm_A          211 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD  244 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEc-CCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            689999999 79999999999999 9999998854

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=84.53  E-value=1.2  Score=38.78  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      .+|.|+| +|.+|.+.+..+...|.+|..+++++++.+.+++.|
T Consensus        30 mkI~VIG-aG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~   72 (356)
T 3k96_A           30 HPIAILG-AGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG   72 (356)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC
Confidence            5799999 699999999988888999999999988888776644

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=84.42  E-value=1.6  Score=45.96  Aligned_cols=38  Identities=29%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEe-CChhh
Q 036416          208 PGHTVLIQAAAGG-VGSLLCQWANALGATVIGTV-STKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~-~~~~~  245 (256)
                      .|.++||.||+++ +|.+++..+...|++|++++ +++++
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~  690 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQ  690 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHH
Confidence            5789999999998 99999998888999999985 54444

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=84.39  E-value=1.7  Score=34.30  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ++++++||-.| +| .|..+..+++. |++|++++.+++-.+.+++
T Consensus        28 ~~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~   70 (235)
T 3sm3_A           28 LQEDDEILDIG-CG-SGKISLELASK-GYSVTGIDINSEAIRLAET   70 (235)
T ss_dssp             CCTTCEEEEET-CT-TSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCeEEEEC-CC-CCHHHHHHHhC-CCeEEEEECCHHHHHHHHH
Confidence            56899999998 44 58888888877 8899999999988887765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=84.38  E-value=1.6  Score=35.99  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++++++||-.| +| .|..+..+++..  +.+|++++.+++..+.+++
T Consensus       104 ~~~~~~~~~~VLD~G-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  153 (275)
T 1yb2_A          104 MRCGLRPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMD  153 (275)
T ss_dssp             --CCCCTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEec-CC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence            445788999999998 44 788888999874  6799999999988877754

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=84.34  E-value=1.3  Score=37.66  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus       123 ~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          123 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPK  158 (303)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            578999999 799999999999999999999987643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=84.08  E-value=1.9  Score=34.25  Aligned_cols=43  Identities=16%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQA  249 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~  249 (256)
                      .++++++||-.| +|. |..+..+++..|  .+|++++.+++..+.+
T Consensus        70 ~~~~~~~vLDlG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~  114 (227)
T 1g8a_A           70 PIKPGKSVLYLG-IAS-GTTASHVSDIVGWEGKIFGIEFSPRVLREL  114 (227)
T ss_dssp             CCCTTCEEEEET-TTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEEe-ccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHH
Confidence            478999999998 454 889999998875  6899999998655544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=84.07  E-value=2.1  Score=34.74  Aligned_cols=47  Identities=19%  Similarity=0.131  Sum_probs=36.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .....+++++||-.| || .|..+..+++. +.+|++++.+++.++.+++
T Consensus        31 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~   77 (260)
T 1vl5_A           31 QIAALKGNEEVLDVA-TG-GGHVANAFAPF-VKKVVAFDLTEDILKVARA   77 (260)
T ss_dssp             HHHTCCSCCEEEEET-CT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEe-CC-CCHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Confidence            344678999999999 45 78888888775 4599999999887777654

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=83.93  E-value=4.1  Score=34.23  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=39.8

Q ss_pred             cCCCCCC--EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGH--TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~--~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+++|+  +|+. ..+|..|.+++..|+.+|.+++++..   ++.|++.++.+|++
T Consensus        55 g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~  110 (304)
T 1ve1_A           55 GILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAE  110 (304)
T ss_dssp             TSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCE
T ss_pred             CCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence            3466776  5555 55899999999999999998666653   46788899999984

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=83.86  E-value=1.2  Score=38.63  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|++.+++++
T Consensus       170 ~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~  205 (340)
T 4dgs_A          170 KGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTL  205 (340)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence            478999999 799999999999999999999998754

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=83.84  E-value=1.1  Score=39.12  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|..+++|+| +|.++.+++++|+.+|++|++++..++
T Consensus       197 ~p~~~L~I~G-aGhva~aLa~la~~lgf~V~v~D~R~~  233 (362)
T 3on5_A          197 SPKERLIIFG-AGPDVPPLVTFASNVGFYTVVTDWRPN  233 (362)
T ss_dssp             CCCEEEEEEC-CSTTHHHHHHHHHHHTEEEEEEESCGG
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            4667899999 599999999999999999999998654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=83.81  E-value=1.5  Score=36.11  Aligned_cols=43  Identities=21%  Similarity=0.227  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      ...++.+||..| | |.|..+..+|+. |++|++++.++.-++.++
T Consensus        65 ~~~~~~~vLD~G-C-G~G~~~~~La~~-G~~V~gvD~S~~~i~~a~  107 (252)
T 2gb4_A           65 KGQSGLRVFFPL-C-GKAIEMKWFADR-GHTVVGVEISEIGIREFF  107 (252)
T ss_dssp             TTCCSCEEEETT-C-TTCTHHHHHHHT-TCEEEEECSCHHHHHHHH
T ss_pred             cCCCCCeEEEeC-C-CCcHHHHHHHHC-CCeEEEEECCHHHHHHHH
Confidence            356889999998 4 468888888875 999999999988887775

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=83.61  E-value=3.7  Score=32.61  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCC
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +.......++.+||-.| +| .|..+..+++. |. +|++++.+++-.+.+++..
T Consensus        35 l~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~   86 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLG-CG-FGWFCRWAHEH-GASYVLGLDLSEKMLARARAAG   86 (243)
T ss_dssp             HHHHSCCCTTCEEEEET-CT-TCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS
T ss_pred             HHHhccccCCCEEEEEc-Cc-CCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhc
Confidence            44455667899999998 34 47777787776 77 9999999988888887653

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=83.54  E-value=4.5  Score=36.97  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=41.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++|++|+.. .+|..|.+++..|+.+|.+++++..   +..|.+.++.+||+
T Consensus       106 ~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  161 (527)
T 3pc3_A          106 EQGLLKPGYTIIEP-TSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAK  161 (527)
T ss_dssp             HHTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             HcCCCCCCCEEEEe-CCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCE
Confidence            44567888887664 5899999999999999998665553   36788899999984

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=83.51  E-value=1.4  Score=34.97  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~  250 (256)
                      ...++.+||=.|  .+.|..++.+|+..  +++|++++.+++..+.++
T Consensus        55 ~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  100 (223)
T 3duw_A           55 QIQGARNILEIG--TLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR  100 (223)
T ss_dssp             HHHTCSEEEEEC--CTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH
T ss_pred             HhhCCCEEEEec--CCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            446788999998  45788899999887  679999999988777664

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=83.48  E-value=1  Score=38.93  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=34.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      +|.|+| +|.+|.+.+..+...|.+|+++++++++.+.+++.
T Consensus        17 kI~iIG-~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            799999 69999988887777788999999998888777654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=83.38  E-value=2.7  Score=31.60  Aligned_cols=47  Identities=13%  Similarity=0.081  Sum_probs=36.5

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ......++++||=.| +| .|..+..+++ .+.++++++.+++-.+.+++
T Consensus        29 ~~~~~~~~~~vLdiG-~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~   75 (183)
T 2yxd_A           29 GKLNLNKDDVVVDVG-CG-SGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQ   75 (183)
T ss_dssp             HHHCCCTTCEEEEES-CC-CSHHHHHHHT-TSSEEEEEECSHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEeC-CC-CCHHHHHHHh-cCCeEEEEeCCHHHHHHHHH
Confidence            334778899999998 34 4778888888 67799999999887776653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=83.31  E-value=2.3  Score=37.66  Aligned_cols=33  Identities=21%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..|+|+| +|..|+.++..+...|.+|++++..+
T Consensus        23 ~~ViIVG-aGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVG-AGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            5799999 59999999999988999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=83.26  E-value=1.6  Score=40.16  Aligned_cols=45  Identities=31%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|++.++... .+.++++|+
T Consensus       141 ~g~~vgIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~  185 (529)
T 1ygy_A          141 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGI  185 (529)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCc
Confidence            478999999 799999999999999999999998753 334556664

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=83.23  E-value=3  Score=35.95  Aligned_cols=48  Identities=21%  Similarity=0.219  Sum_probs=37.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe----CChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV----STKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~----~~~~~~~~~~~~Ga~  255 (256)
                      .|...+|...+|..|.+++..|+..|.+++++.    .+..|.+.++.+||+
T Consensus        77 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~  128 (352)
T 2zsj_A           77 AGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAK  128 (352)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCE
T ss_pred             cCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCE
Confidence            344556666789999999999999999865554    346688899999984

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=83.11  E-value=2.1  Score=36.39  Aligned_cols=44  Identities=14%  Similarity=0.032  Sum_probs=36.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCCh-------hhHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTK-------EKAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~-------~~~~~~~~~Ga  254 (256)
                      .+|.|+| .|.+|...+..+...| .+|++.++++       ++.+.+.+.|+
T Consensus        25 m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~   76 (317)
T 4ezb_A           25 TTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV   76 (317)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC
T ss_pred             CeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC
Confidence            5799999 7999999999998899 8999999986       45555555553

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=83.08  E-value=2.3  Score=34.72  Aligned_cols=45  Identities=16%  Similarity=0.034  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++||-+|  .+.|..++.+|+..  +++|++++.+++..+.+++
T Consensus        76 ~~~~~~~VLeiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~  122 (247)
T 1sui_A           76 KLINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLP  122 (247)
T ss_dssp             HHTTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH
T ss_pred             HhhCcCEEEEeC--CCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            345678999998  66888999999986  6799999999887777653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=82.99  E-value=1.6  Score=33.78  Aligned_cols=42  Identities=29%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ++++ +||-.| +|. |..+..+++. |++|++++.+++..+.+++
T Consensus        28 ~~~~-~vLdiG-cG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~   69 (202)
T 2kw5_A           28 IPQG-KILCLA-EGE-GRNACFLASL-GYEVTAVDQSSVGLAKAKQ   69 (202)
T ss_dssp             SCSS-EEEECC-CSC-THHHHHHHTT-TCEEEEECSSHHHHHHHHH
T ss_pred             CCCC-CEEEEC-CCC-CHhHHHHHhC-CCeEEEEECCHHHHHHHHH
Confidence            5677 999998 454 8888888775 8899999999887777654

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=82.98  E-value=6.1  Score=35.09  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~  241 (256)
                      .|.+|.|.| .|.+|..+++++.. .|++|+++..
T Consensus       208 ~g~~vaVqG-~GnVG~~~a~~L~e~~GakvVavsD  241 (415)
T 2tmg_A          208 KKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD  241 (415)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHhcCCEEEEEEe
Confidence            689999999 79999999999998 9999885554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=82.90  E-value=2.1  Score=38.55  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+|.|+| +|.+|...++.+...|.+|++++.++++.+.++
T Consensus        38 ~kV~VIG-aG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~   77 (463)
T 1zcj_A           38 SSVGVLG-LGTMGRGIAISFARVGISVVAVESDPKQLDAAK   77 (463)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            4799999 699999999988889999999999988766543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=82.87  E-value=1.1  Score=35.95  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhhHHHH-HhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIG-TVSTKEKAAQA-KDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~-~~~~~~~~~~~-~~~Ga  254 (256)
                      .+|.|+| +|.+|.+.+..+...|.+|+. .++++++.+.+ +++|.
T Consensus        24 mkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~   69 (220)
T 4huj_A           24 TTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGA   69 (220)
T ss_dssp             CCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTT
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCC
Confidence            4699999 799999998888888999888 88888876654 45553

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=82.81  E-value=3.7  Score=36.62  Aligned_cols=35  Identities=37%  Similarity=0.582  Sum_probs=30.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|.+|.|.| .|.+|..+++++...|++|+++..+
T Consensus       208 l~gk~vaVqG-~GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          208 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3689999999 7999999999999999999865543

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=82.75  E-value=1.4  Score=37.97  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.+...
T Consensus       140 ~g~tvGIiG-~G~IG~~va~~~~~fg~~v~~~d~~~  174 (334)
T 3kb6_A          140 NRLTLGVIG-TGRIGSRVAMYGLAFGMKVLCYDVVK  174 (334)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCcEEEEEC-cchHHHHHHHhhcccCceeeecCCcc
Confidence            478999999 79999999999999999999998764

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=82.74  E-value=1.6  Score=31.36  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             cEEEEEEeCCCCC--ccCCCCEEEEe
Q 036416          133 AVGEVVAVGPGLT--GRTVGDIIAYA  156 (256)
Q Consensus       133 ~~G~V~~vG~~v~--~~~~Gd~V~~~  156 (256)
                      .-|.|++||+++.  .+++||+|..-
T Consensus        47 ~~g~VvAVG~g~~~~~vKvGD~Vl~~   72 (111)
T 1g31_A           47 ELCVVHSVGPDVPEGFCEVGDLTSLP   72 (111)
T ss_dssp             EEEEEEEECTTSCTTSCCTTCEEEEE
T ss_pred             ceEEEEEECCCCccccccCCCEEEEC
Confidence            4699999999875  38999999863

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=82.72  E-value=3.1  Score=35.90  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~  255 (256)
                      .|...+|...+|..|.+++..|+..|.+++++..    +..|.+.++.+||+
T Consensus        75 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~  126 (351)
T 3aey_A           75 GGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGAR  126 (351)
T ss_dssp             TTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCE
T ss_pred             cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCE
Confidence            3444566666899999999999999998665542    46688899999984

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=82.31  E-value=1.3  Score=36.11  Aligned_cols=45  Identities=13%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++.+||=+|  .+.|..++.+|+..  +.+|++++.+++..+.+++
T Consensus        60 ~~~~~~~VLdiG--~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  106 (248)
T 3tfw_A           60 RLTQAKRILEIG--TLGGYSTIWMARELPADGQLLTLEADAHHAQVARE  106 (248)
T ss_dssp             HHHTCSEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH
T ss_pred             hhcCCCEEEEec--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            446789999998  34588999999887  5699999999988877654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=82.29  E-value=1.2  Score=38.53  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~  245 (256)
                      .|.+|.|+| .|.+|..+++.++..|.+|++.++++++
T Consensus       163 ~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIG-LGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            467899999 6999999999999999999999987543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=82.22  E-value=2.2  Score=38.24  Aligned_cols=41  Identities=15%  Similarity=0.044  Sum_probs=34.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      -.+|.|+| .|.+|+..+..+.. |.+|++++.++++.+.+++
T Consensus        36 ~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           36 FMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHT
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhc
Confidence            35899999 69999987777666 9999999999999887765

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=82.05  E-value=2.4  Score=34.21  Aligned_cols=45  Identities=11%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++||-+|  ++.|..++.+|+..  +.+|++++.+++..+.+++
T Consensus        67 ~~~~~~~VLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~  113 (237)
T 3c3y_A           67 KLVNAKKTIEVG--VFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP  113 (237)
T ss_dssp             HHTTCCEEEEEC--CTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhhCCCEEEEeC--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            345678999998  56788889999886  5799999999888777653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=81.78  E-value=1.4  Score=47.98  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=31.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~  243 (256)
                      .++.++||.||+|++|.++++.....|++ |+.+.++.
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~ 1919 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSG 1919 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            36788999999999999999999999997 77776653

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=81.68  E-value=2.8  Score=36.80  Aligned_cols=37  Identities=24%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      -.|.+|.|+| .|.+|..+++.++..|++|++.++..+
T Consensus       114 l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~  150 (380)
T 2o4c_A          114 LAERTYGVVG-AGQVGGRLVEVLRGLGWKVLVCDPPRQ  150 (380)
T ss_dssp             GGGCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             cCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCChh
Confidence            4688999999 799999999999999999999886543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=81.58  E-value=2.1  Score=36.18  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~  243 (256)
                      ...+|+|.| +|++|..+++.+...|. ++..+|.+.
T Consensus        35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999 69999999999989998 788777653

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=81.18  E-value=3.8  Score=35.50  Aligned_cols=48  Identities=23%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~  255 (256)
                      .|...+|...+|..|.+++..|+.+|.+++++..    ++.|.+.++.+||+
T Consensus        83 ~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~  134 (360)
T 2d1f_A           83 HGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAK  134 (360)
T ss_dssp             TTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCE
Confidence            3444556666899999999999999998666653    36688899999974

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=81.08  E-value=3.7  Score=33.68  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=37.0

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....++.+||=.|  .|.|..+..+++ .+++|++++.+++-++.+++
T Consensus        53 l~~~~~~~vLDiG--cG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~   97 (279)
T 3ccf_A           53 LNPQPGEFILDLG--CGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQ   97 (279)
T ss_dssp             HCCCTTCEEEEET--CTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEec--CCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHh
Confidence            4677899999998  456888888888 78899999999887777764

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=81.02  E-value=3.3  Score=35.23  Aligned_cols=46  Identities=17%  Similarity=0.050  Sum_probs=36.6

Q ss_pred             CEEEEec-CCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416          210 HTVLIQA-AAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~g-a~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~  255 (256)
                      ++|+-.| .+|..|.+++..|+.+|.+.+++..    +..|.+.++.+||+
T Consensus        71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~  121 (325)
T 1j0a_A           71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIE  121 (325)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCE
T ss_pred             CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCE
Confidence            4566553 7899999999999999997666552    45789999999985

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=81.02  E-value=1.8  Score=36.81  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC----CeEEEEeCChh--hHHHHHhCCC
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALG----ATVIGTVSTKE--KAAQAKDDGC  254 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~g----a~Vi~~~~~~~--~~~~~~~~Ga  254 (256)
                      .+|.|+| +|.+|.+.+..+...|    .+|++++++++  +.+.+++.|+
T Consensus        23 mkI~iIG-~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~   72 (322)
T 2izz_A           23 MSVGFIG-AGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV   72 (322)
T ss_dssp             CCEEEES-CSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCC
Confidence            3699999 6999999888888888    68999999875  6777776664

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=80.99  E-value=1.9  Score=38.36  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.+
T Consensus       155 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVG-YGNIGSQVGNLAESLGMTVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            478999999 79999999999999999999999753

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=80.94  E-value=2.5  Score=33.10  Aligned_cols=44  Identities=30%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+++.+||=.|  +|.|..+..+++. |+++++++.+++-.+.+++
T Consensus        42 ~~~~~~~vLDiG--cG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~   85 (220)
T 3hnr_A           42 VNKSFGNVLEFG--VGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKE   85 (220)
T ss_dssp             HHTCCSEEEEEC--CTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred             hccCCCeEEEeC--CCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHH
Confidence            345889999998  4457788888876 8899999999888877765

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=80.89  E-value=0.96  Score=46.66  Aligned_cols=38  Identities=29%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEe-CChhh
Q 036416          208 PGHTVLIQAAAGG-VGSLLCQWANALGATVIGTV-STKEK  245 (256)
Q Consensus       208 ~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~-~~~~~  245 (256)
                      .|+++||.||+++ +|.++++.+...|++|++++ ++.++
T Consensus       475 ~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~  514 (1688)
T 2pff_A          475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQ  514 (1688)
T ss_dssp             CSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHH
Confidence            5788999999998 99999998888999999884 54443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=80.81  E-value=3.2  Score=37.20  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEe
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTV  240 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~  240 (256)
                      .+.+|+|.| +|+.|.+++..+...|+   +|++++
T Consensus       185 ~~~rvlvlG-AGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFG-AGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            578999999 59999999999999998   688888

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=80.79  E-value=2.8  Score=36.87  Aligned_cols=35  Identities=29%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus       117 l~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~  151 (381)
T 3oet_A          117 LRDRTIGIVG-VGNVGSRLQTRLEALGIRTLLCDPP  151 (381)
T ss_dssp             GGGCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cCCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCC
Confidence            3689999999 7999999999999999999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.77  E-value=2.3  Score=36.79  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      .+.+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus        33 ~~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            468899999 69999999999999998 67777654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=80.75  E-value=2  Score=34.05  Aligned_cols=45  Identities=20%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++||=+|  .+.|..++.+|+..  +++|++++.+++..+.+++
T Consensus        55 ~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  101 (221)
T 3u81_A           55 REYSPSLVLELG--AYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ  101 (221)
T ss_dssp             HHHCCSEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCEEEEEC--CCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence            345788999998  55688888899864  6799999999988777754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=80.68  E-value=1.8  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ...|+|+| +|..|++++..+...|.+|+++++.+
T Consensus        26 ~~dV~IVG-aG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIG-GGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35799999 59999999999998999999999753

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=80.50  E-value=3.2  Score=35.06  Aligned_cols=47  Identities=19%  Similarity=0.194  Sum_probs=37.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ++.+|+..+ +|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        64 ~~~~vv~~s-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  113 (311)
T 1ve5_A           64 NPKGLLAVS-SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAE  113 (311)
T ss_dssp             SCCCEEEEC-SSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCE
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence            455666665 899999999999999998777764   35688899999974

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=80.46  E-value=4  Score=35.63  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=36.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +++|+..+ +|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        93 ~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  141 (372)
T 1p5j_A           93 CAHFVCSS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGAT  141 (372)
T ss_dssp             CCEEEECC-SSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCE
T ss_pred             CCEEEEeC-CCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCE
Confidence            45555555 799999999999999998776664   46788899999984

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=80.38  E-value=2.2  Score=36.51  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=34.6

Q ss_pred             CEEEEe-cCCChHHHHHHHHHHHcCCeEEEEeCC---hh--------hHHHHHhCCCC
Q 036416          210 HTVLIQ-AAAGGVGSLLCQWANALGATVIGTVST---KE--------KAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~-ga~g~vG~~ai~la~~~ga~Vi~~~~~---~~--------~~~~~~~~Ga~  255 (256)
                      ++|+-. +.+|..|.+++..|+.+|.+.+++...   ++        |.+.++.+||+
T Consensus        68 ~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~  125 (338)
T 1tzj_A           68 DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD  125 (338)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCE
T ss_pred             CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCE
Confidence            345544 467899999999999999986665542   22        88999999984

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=80.26  E-value=4.3  Score=34.36  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      +++|+..+ +|..|.+++..|+.+|.+++++..   ++.|++.++.+|++
T Consensus        54 ~~~vv~~s-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~  102 (318)
T 2rkb_A           54 CRHLVCSS-GGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAE  102 (318)
T ss_dssp             CCEEEECC-CSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCE
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCE
Confidence            45555555 799999999999999998776664   36788889999974

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=80.24  E-value=4.1  Score=34.37  Aligned_cols=47  Identities=19%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+.++++++||=+|  .|.|.++..+++. +.+|++++.+++-.+.+++
T Consensus        44 ~~l~~~~~~~VLEIG--~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~   90 (295)
T 3gru_A           44 ESANLTKDDVVLEIG--LGKGILTEELAKN-AKKVYVIEIDKSLEPYANK   90 (295)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHH
T ss_pred             HhcCCCCcCEEEEEC--CCchHHHHHHHhc-CCEEEEEECCHHHHHHHHH
Confidence            456788999999998  4578888888886 7899999999887776654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=80.23  E-value=3.4  Score=31.29  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=35.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ++++.+||-.| +| .|..+..+++. |.++++++.+++..+.+++
T Consensus        44 ~~~~~~vLdiG-~G-~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~   86 (195)
T 3cgg_A           44 APRGAKILDAG-CG-QGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQ   86 (195)
T ss_dssp             SCTTCEEEEET-CT-TTHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             ccCCCeEEEEC-CC-CCHHHHHHHHC-CCcEEEEcCCHHHHHHHHH
Confidence            57899999998 44 67788888876 8899999999888877765

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=80.13  E-value=1.1  Score=36.19  Aligned_cols=45  Identities=13%  Similarity=-0.076  Sum_probs=37.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      ..+|.+||=+|  .|.|..+..+++..+.+|++++.+++-.+.+++.
T Consensus        58 ~~~G~rVLdiG--~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~  102 (236)
T 3orh_A           58 SSKGGRVLEVG--FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW  102 (236)
T ss_dssp             TTTCEEEEEEC--CTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHH
T ss_pred             ccCCCeEEEEC--CCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHH
Confidence            36899999999  4468888899887778999999999888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	6e-23
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	8e-23
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-22
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	9e-21
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-20
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-19
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	5e-19
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	1e-18
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	1e-17
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	4e-17
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	6e-17
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-16
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	4e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-14
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-13
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	7e-13
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	9e-13
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-12
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-12
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	5e-12
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-11
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	4e-11
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	5e-11
d1vj1a1	166	b.35.1.2 (A:-1-124,A:312-351) Putative zinc-bindin	1e-10
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-10
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	2e-09
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	2e-09
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	4e-09
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	7e-09
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	2e-08
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	2e-08
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	8e-08
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-07
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	4e-07
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	8e-07
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	3e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	7e-06
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	9e-06
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	1e-05
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	2e-05
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	2e-05
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	3e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	1e-04
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	2e-04
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	3e-04
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	7e-04
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	0.001
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	0.002
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	0.002
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	0.002
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	0.002

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 6e-23
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 69  MVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMP 126
           +++A+RV+E G PEVLK   D+ +  P + ++ ++  A G+N ++ Y R G Y     +P
Sbjct: 2   LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 61

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIA 186
           +TPG +  G + AVG   +    GD +  +    G YAE  +   + V  +P  + PVI 
Sbjct: 62  YTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIG 121

Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
           +   L+ +              G  +L+
Sbjct: 122 SQYPLEKVAEAHENIIHGSGATGKMILL 149

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 88.9 bits (219), Expect = 8e-23
 Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
             I  ++HG PEVL+  +    +P E EI+V NKAIG+NFID Y R G+Y P  +P   G
Sbjct: 2   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLG 61

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASI- 189
            EA G V  VG G+     GD + YA  A+G+Y+    + A+K   +P++I   +A    
Sbjct: 62  TEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQK 121

Query: 190 --MLKGMTAQFLLRRCFKVEPGHTVLI 214
             +     A  +L    +   G ++LI
Sbjct: 122 YPLKDAQRAHEILES--RATQGSSLLI 146

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 88.0 bits (217), Expect = 3e-22
 Identities = 18/159 (11%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 67  TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
           + + +A++  ++ D   +  + +   +  +  + ++    G+N+ D    K      +  
Sbjct: 1   STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREY 60

Query: 127 FT----PGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSID 182
                      V              +           G  +E   +P + +VP+P ++ 
Sbjct: 61  PLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLS 120

Query: 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221
              A    L  +  + +            +L     G V
Sbjct: 121 LKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGRV 158

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 83.8 bits (206), Expect = 9e-21
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 8/152 (5%)

Query: 68  NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPF 127
           +  +A  V +         + + + +  EG++ VR     +N+ D        K  K   
Sbjct: 2   SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYP 61

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAY-----AGGAMGSYAEEQILPANKVVPVPSSID 182
                     V V         GD +            G Y+E   L    +VP+P  ++
Sbjct: 62  -FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE 120

Query: 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
             IA  I L  +          ++  G TV+ 
Sbjct: 121 R-IAQEISLAELPQALKRILRGEL-RGRTVVR 150

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 1e-20
 Identities = 31/191 (16%), Positives = 51/191 (26%), Gaps = 49/191 (25%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA   +E G P  L  E++E+  P   E+R++  A  +   D Y   G       P   G
Sbjct: 8   KAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILG 65

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA------------------------------------ 154
               G V +VG G+T    GD +                                     
Sbjct: 66  HLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDG 125

Query: 155 -----------YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203
                             +++E  ++    V  +   I      +  L            
Sbjct: 126 TSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELM 185

Query: 204 FKVEPGHTVLI 214
              +   TV+ 
Sbjct: 186 HSGKSIRTVVK 196

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 80.7 bits (198), Expect = 2e-19
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 32/172 (18%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTP 129
           KA  V+ +G P  L+ E+V++  PG G++ V+ +A G+   D++  +G +     +PF P
Sbjct: 7   KAAVVHAYGAP--LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMG---------------------------S 162
           G E VG V AVG G+T    GD +                                    
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGG 124

Query: 163 YAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
           YAE  +   N V  +P ++   I    +         +R       G  VL 
Sbjct: 125 YAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMRA--GQIEGRIVLE 174

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 80.3 bits (197), Expect = 5e-19
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 49/199 (24%)

Query: 63  TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           T  +    KA   +E   P  L  E++E+  P   EIR++  A G+   D+Y+       
Sbjct: 2   TVGKVIKCKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK 59

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA---------------------------- 154
              P   G E  G V +VGPG+T    G+ +                             
Sbjct: 60  DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119

Query: 155 -------------------YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195
                                     ++++  ++    V  +  S+      +  +   +
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179

Query: 196 AQFLLRRCFKVEPGHTVLI 214
               +      +   TVL 
Sbjct: 180 VNDAIDLMKHGKCIRTVLS 198

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 77.6 bits (190), Expect = 1e-18
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 4/136 (2%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP- 129
           +A+ + +     +   + ++     EG++ V      LN+ D     G  K  +      
Sbjct: 2   QALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIP 61

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAM---GSYAEEQILPANKVVPVPSSIDPVIA 186
           G++  G V              ++   G      G  AE+  +  + +V +P        
Sbjct: 62  GIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEI 121

Query: 187 ASIMLKGMTAQFLLRR 202
           +           +  +
Sbjct: 122 SLSEAPNFAEAIINNQ 137

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.0 bits (186), Expect = 1e-17
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 36/180 (20%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           + I +  H D +  K    +     + +I ++ +A G+   D++   G +   KMP   G
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVG 67

Query: 131 MEAVGEVVAVGPG-LTGRTVGDIIA----------------------------------Y 155
            E VG+VV +GP   +G  VG  +                                    
Sbjct: 68  HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYED 127

Query: 156 AGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ 215
              + G YA    +  + VVP+P +I              A   + +   V    T++  
Sbjct: 128 GYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKG-DVRYRFTLVGY 186

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 74.8 bits (182), Expect = 4e-17
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 17/175 (9%)

Query: 69  MVKAIRVYEHGDP-EVLKWEDVEIGEP--GEGEIRVRNKAIGLNFIDVYYRKGVY----- 120
             +A+   +HG+P +VL  +  EI +      E+ V+     +N  D+   +GVY     
Sbjct: 3   TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPA 62

Query: 121 -----KPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVV 175
                   +     G E + EV+ VG  ++    GD +  +    G++    +   +  +
Sbjct: 63  KTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFI 122

Query: 176 PVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAA-GGVGSLLCQW 228
            +P        A+    G+T    +   +   +P H +     A    G  L  +
Sbjct: 123 KLP--NPAQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 175

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 72.9 bits (178), Expect = 6e-17
 Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 15/144 (10%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           KA  +   G P  L+  D+   E  EGE+ +R +A+GLNF D   R G Y     P    
Sbjct: 2   KAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIP 59

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIM 190
              V  V           V      A    G  AE   +P   ++P+P     V      
Sbjct: 60  GMEVVGV-----------VEGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPF 108

Query: 191 LKGMTAQFLLRRCFKVEPGHTVLI 214
            +   A   L    +   G  V+ 
Sbjct: 109 AEAEAAFRALLD--RGHTGKVVVR 130

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 37/174 (21%), Positives = 59/174 (33%), Gaps = 36/174 (20%)

Query: 78  HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR---KGVYKPAKMPFTPGMEAV 134
           HG P  L+ E+  I EPG  E+ +R  ++G+   DV+Y    +      K P   G EA 
Sbjct: 14  HG-PGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEAS 72

Query: 135 GEVVAVGPGLTGRTVGDI-------------------------IAYAGG--AMGSYAEEQ 167
           G V  VG  +     GD                          I +       G+     
Sbjct: 73  GTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFY 132

Query: 168 ILPANKVVPVPSSIDPVIAASIML-KGMTAQFLLRRCFKVEPGHTVLIQAAAGG 220
              A     +P ++ P++     L K + A       FK   G  ++++     
Sbjct: 133 KHNAAFCYKLPDNVKPLVTHRFPLEKALEAF----ETFKKGLGLKIMLKCDPSD 182

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 69.2 bits (168), Expect = 4e-15
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 37/178 (20%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY--------KP 122
           +A+R+ E G P  L  +++ + +P   ++ ++ +A G+   DV+ R+G +          
Sbjct: 2   RAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLG 59

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVG--------------------------DIIAYA 156
            K+P T G E  G++  VG  + G + G                                
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119

Query: 157 GGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
               G+YAE  I+P  K +     + P+I  ++ L+           FK   G  VLI
Sbjct: 120 INFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKA-IGRQVLI 176

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 67.3 bits (163), Expect = 2e-14
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 31/167 (18%)

Query: 81  PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKG---VYKPAKMPFTPGMEAVGEV 137
              L+ E   I EP E E+ ++   +G+   DV+Y +         K P   G EA G V
Sbjct: 10  QNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTV 69

Query: 138 VAVGPGLTGRTVGDIIAYAGGA---------------------------MGSYAEEQILP 170
           V VG  +     GD +A   G                             G+ A   +  
Sbjct: 70  VKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHA 129

Query: 171 ANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAA 217
           A+    +P + +     +   K            + +  +T+ +  +
Sbjct: 130 ADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAA-RKKADNTIKVMIS 175

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 47/205 (22%)

Query: 71  KAIRVYEHGDPEVLKWEDVEI----GEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP 126
           + +     G  EV K +  ++    G+  E  + ++  +  +   D +  +G        
Sbjct: 3   RGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL 62

Query: 127 FTPGMEAV--------------GEVVAVGP------------GLTGRTVGDIIAYAGGAM 160
                                 G++V+V                TG  +    A AGGA 
Sbjct: 63  VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAY 122

Query: 161 G---------SYAEEQILPANK--VVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPG 209
           G           AE  ++P     ++ +P     +   +I          L        G
Sbjct: 123 GYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDA-PRGYG 181

Query: 210 HTVLIQAAAGGVGSLLCQWANALGA 234
                   AG     +        A
Sbjct: 182 EF-----DAGVPKKFVIDPHKTFSA 201

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 63.4 bits (153), Expect = 7e-13
 Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 25/194 (12%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           + A      G     + + ++I +P   E+ V+  A G+   D+  R   Y    +P   
Sbjct: 4   IIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVL 60

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAE-----------------EQILPAN 172
           G E  G + A+GP +T   VGD +  + G  G   +                        
Sbjct: 61  GHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 173 KVVPVPSSIDPVIAASIMLKGMTAQFLL--RRCFKVE---PGHTVLIQAAAGGVGSLLCQ 227
                      V              L       KV    P   ++   A   +      
Sbjct: 121 NHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAID 180

Query: 228 WANALGATVIGTVS 241
               +    I  ++
Sbjct: 181 SRKGITLKPIIKIA 194

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 62.7 bits (151), Expect = 9e-13
 Identities = 42/172 (24%), Positives = 59/172 (34%), Gaps = 34/172 (19%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVY-YRKGVYKPAKMPFTP 129
           KA  V +  +P  LK ++VE      GE+ VR KA G+   D++          K+P  P
Sbjct: 2   KAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIP 59

Query: 130 GMEAVGEVVAVGPGLTGRTV---------------------------GDIIAYAGGAMGS 162
           G E VG V  VGPG+T   V                                      G 
Sbjct: 60  GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGG 119

Query: 163 YAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
           YAE     A+ VV +P +    +     +       +L+       G  VL 
Sbjct: 120 YAEYCRAAADYVVKIPDNTIIEVQPLEKI-NEVFDRMLKG---QINGRVVLT 167

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 57/203 (28%)

Query: 63  TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           T+ +    KA   ++ G P  L  E++E+  P   E+R++  A  +   D+       K 
Sbjct: 2   TQGKVIKCKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATD-PKKK 58

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA---------------------------- 154
           A  P   G E  G V +VGPG+T    GD +                             
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118

Query: 155 -----------------------YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIML 191
                                  Y    + S+++  ++    +  V    D  +  +  L
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHAL 178

Query: 192 KGMTAQFLLRRCFKVEPGHTVLI 214
              +    +     ++ G ++  
Sbjct: 179 PFESINDAIDL---MKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 57/201 (28%)

Query: 63  TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           T  +    KA  ++E   P     E+VE+  P   E+R++  A G+   D +   G    
Sbjct: 2   TAGKVIKCKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLV 58

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA---------------------------- 154
             +P   G EA G V ++G G+T    GD +                             
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM 118

Query: 155 -------------------YAGGAMGSYAEEQILPANKVVPVPSSI--DPVIAASIMLKG 193
                              +      ++++  ++    V  + ++   DP+I   +  + 
Sbjct: 119 PRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEK 178

Query: 194 MTAQFLLRRCFKVEPGHTVLI 214
           +   F       +  G ++  
Sbjct: 179 INEGFD-----LLRSGESIRT 194

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 37/162 (22%)

Query: 70  VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTP 129
           +KA+  Y    P  L+  D+   EPG  ++++     G+   D++  +  +     P  P
Sbjct: 1   IKAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 58

Query: 130 GMEAVGEVVAVGPGLTGRTVGDIIA----------------------------------- 154
           G E VG VVAVG  +     GD++                                    
Sbjct: 59  GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPD 118

Query: 155 YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA 196
             G  +G Y+++ ++    V+ +  +   +I A  + +    
Sbjct: 119 EPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYER 160

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 50/185 (27%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
            A+ + +   P  L +++ EI +   G I V   + G+   DV+  +G      +P   G
Sbjct: 6   HAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILG 63

Query: 131 MEAVGEVVAVG----------------------------------------PGLTGRTVG 150
            E  G VV V                                         P      + 
Sbjct: 64  HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGIN 123

Query: 151 DIIAYAGGAMGSYAEEQIL-PANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPG 209
              +      G Y+   +L P   V+ V   I   +          A   L    +    
Sbjct: 124 RGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRLPLK------EANKALELM-ESREA 176

Query: 210 HTVLI 214
             V++
Sbjct: 177 LKVIL 181

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 61/210 (29%)

Query: 63  TRTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           T  +    KA   +E   P  L  E + +  P   E+R++  A G+   D    K    P
Sbjct: 2   TAGKDITCKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLK-EIIP 58

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIA---------------------------- 154
           +K P   G EAVG V ++G G+T    GD +                             
Sbjct: 59  SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 118

Query: 155 -------------------YAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195
                              Y      ++ E  ++    V  +   I+     S  L    
Sbjct: 119 KTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKL---- 174

Query: 196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLL 225
                    ++     +L  +  G    ++
Sbjct: 175 ------TLDQINKAFELLS-SGQGVRSIMI 197

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 57.8 bits (138), Expect = 5e-11
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 34/174 (19%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMP 126
           KA R++E+  P  L+ EDV+     G  ++ VR    G+   D++  +G++      K+P
Sbjct: 1   KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 58

Query: 127 FTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG--------------------------AM 160
           +T G E VG +  V  G+ G   GD +                                 
Sbjct: 59  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNID 118

Query: 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLI 214
           G +AE        V+ +P  +   +    + +       L +  +V  G  VLI
Sbjct: 119 GGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK-GEV-LGRAVLI 170

>d1vj1a1 b.35.1.2 (A:-1-124,A:312-351) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 166

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 7/151 (4%)

Query: 74  RVYEHGDP--EVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP---F 127
           R  ++G+P  E  + E+  + +   EG+++VR   + ++               +     
Sbjct: 13  RPGKNGNPVAENFRVEEFSLLDALNEGQVQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQL 72

Query: 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPV-PSSIDPVIA 186
               +  G  +           GD +        + A        KV P     +     
Sbjct: 73  AQVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGLKVKET 132

Query: 187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAA 217
            +  L+ M   F             V I   
Sbjct: 133 VAKGLENMGVAFQSMMTGGNVGKQIVCISED 163

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC-QWANALGATVIGTVSTKE 244
            A+I +  +TA  +L    K+ PG    IQ            Q    L    I  +  + 
Sbjct: 6   GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 65

Query: 245 KAAQAKDDGCHH 256
              +        
Sbjct: 66  NLDEVVASLKEL 77

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234
           +P+  ++      +I + G+TA F L     V+ G TVL+ AAAG VGS++ Q A   G 
Sbjct: 1   LPLSLAL-----GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC 55

Query: 235 TVIGTVSTKEKAAQAKDDGCHH 256
            V+G   + EK A  K  G   
Sbjct: 56  KVVGAAGSDEKIAYLKQIGFDA 77

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 181 IDPVIAASIMLKGMTAQ---FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVI 237
           +D   A  I   G TA      L           +++  A+GGVGS      + LG  V+
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV 60

Query: 238 GTVSTKEKAAQAKDDG 253
                +      K  G
Sbjct: 61  AVSGRESTHEYLKSLG 76

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 34/157 (21%)

Query: 71  KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPG 130
           K   +        L W + E    G  +  VR  A+     D++         +     G
Sbjct: 2   KGFAMLGINK---LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILG 58

Query: 131 MEAVGEVVAVGPGLTGRTVGDIIA-----------------------------YAGGAMG 161
            EAVGEVV VG  +     GD +                              ++    G
Sbjct: 59  HEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG 118

Query: 162 SYAEEQILPA--NKVVPVPSSIDPVIAASIMLKGMTA 196
            + E   +      +  +P  +D     + +  G   
Sbjct: 119 VFGEYFHVNDADMNLAILPKDVDLSKLVTHVYHGFDH 155

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 35/71 (49%), Positives = 46/71 (64%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA+  LKG+T  +LLR+ ++++P    L  AAAGGVG + CQWA ALGA +IGTV T +K
Sbjct: 6   AAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK 65

Query: 246 AAQAKDDGCHH 256
           A  A   G   
Sbjct: 66  AQSALKAGAWQ 76

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 193 GMTAQFLLRRCFKVEPGH--TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250
           G+T+   ++    +  G   T+++  AAG  GSL  Q  + LG + +  +   ++     
Sbjct: 13  GLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL 72

Query: 251 DDGCHH 256
                 
Sbjct: 73  TSELGF 78

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 15/139 (10%)

Query: 69  MVKAIRV----YEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP 122
           MVKA       +  G P     + + VE+     GE+ +    + ++       K     
Sbjct: 1   MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK----- 55

Query: 123 AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSID 182
            ++     M        V    +    G I+    G   ++         K++       
Sbjct: 56  -RLKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSG-WTTHFISDGKGLEKLLTEWPDKK 113

Query: 183 PVIAASIML--KGMTAQFL 199
                 +    + M A F+
Sbjct: 114 IQYHEHVTKGFENMPAAFI 132

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 18/71 (25%), Positives = 26/71 (36%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
              I     T      +  KV  G T  +    G   S++     A  A +IG    K+K
Sbjct: 6   VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 65

Query: 246 AAQAKDDGCHH 256
            A+AK+ G   
Sbjct: 66  FAKAKEVGATE 76

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 15/71 (21%), Positives = 26/71 (36%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
              +     T         K+EPG    +    G   +++     A  + +IG    K+K
Sbjct: 6   VCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK 65

Query: 246 AAQAKDDGCHH 256
            A+AK+ G   
Sbjct: 66  FARAKEFGATE 76

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 193 GMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249
           G TA   + R  +        +VL+  A GGVG +     N  G  V+ +   +E A   
Sbjct: 5   GFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 64

Query: 250 KDDGCHH 256
           K  G   
Sbjct: 65  KQLGASE 71

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228
           D  + A  M  G TA        +   G TV+IQ  AG +G      
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVI 47

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240
           ++    A I+  G+T    L++     PG  V I    GG+G +  Q+A A+G  V    
Sbjct: 1   VEFAEIAPILCAGVTVYKGLKQT-NARPGQWVAIS-GIGGLGHVAVQYARAMGLHVAAID 58

Query: 241 STKEKAAQAKDDGCHH 256
               K   A+  G   
Sbjct: 59  IDDAKLELARKLGASL 74

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 17/74 (22%), Positives = 27/74 (36%)

Query: 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242
           P+ +  I     T         KV PG T  +    G   S +     A  + +IG  + 
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 243 KEKAAQAKDDGCHH 256
           K+K  +A + G   
Sbjct: 62  KDKFPKAIELGATE 75

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228
           AA+  +  +TA   L    ++ PG  VLI +A GGVG      
Sbjct: 3   AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSI 45

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240
           I   +AA ++  G+T    L R     PG  V I    GG+GS+    + A+GA      
Sbjct: 1   IPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIV-GLGGIGSMGTLISKAMGAETYVIS 58

Query: 241 STKEKAAQAKDDGCHH 256
            +  K   A   G  H
Sbjct: 59  RSSRKREDAMKMGADH 74

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228
           ++ V AA +   G+T    +R+   ++P  T+L+  A GG+G++  Q 
Sbjct: 1   LNAVEAAPLTCSGITTYRAVRKA-SLDPTKTLLVVGAGGGLGTMAVQI 47

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245
           AA I   G+T    L+     +PG  V I    G       Q+A A+G  V+      EK
Sbjct: 6   AAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHV-AVQYAKAMGLNVVAVDIGDEK 63

Query: 246 AAQAKDDGCHH 256
              AK+ G   
Sbjct: 64  LELAKELGADL 74

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 186 AASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242
           A +I   G TA   + R  +         VL+  A GGVGSL        G TV  +   
Sbjct: 6   AMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK 65

Query: 243 KEKAAQAKDDGCHH 256
             +    +  G   
Sbjct: 66  AAEHDYLRVLGAKE 79

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240
           +D    A+I +   TA   L     V+ G +VL+  A+GGVG   CQ A A G  ++GT 
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA 60

Query: 241 STKEKAAQAKDDGCHH 256
            T+E       +G H 
Sbjct: 61  GTEEGQKIVLQNGAHE 76

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 21/72 (29%)

Query: 185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244
               +     T         KVEPG T  +        + +    +A    +I      +
Sbjct: 5   TVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD 64

Query: 245 KAAQAKDDGCHH 256
           K  +AK  G   
Sbjct: 65  KFEKAKVFGATD 76

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK 243
           +   +     T         KV P  + +    AG VG      A   GA  +I     +
Sbjct: 5   LLGPLGCGIQTGAGACINALKVTPASSFVTW-GAGAVGLSALLAAKVCGASIIIAVDIVE 63

Query: 244 EKAAQAKDDGCHH 256
            +   AK  G  H
Sbjct: 64  SRLELAKQLGATH 76

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 2/72 (2%)

Query: 186 AASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT-VSTKE 244
              I     +         KV PG T  +    G VG          GA+ I       E
Sbjct: 6   VCLIGCGFSSGYGAAINTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRIIAIDINGE 64

Query: 245 KAAQAKDDGCHH 256
           K  +AK  G   
Sbjct: 65  KFPKAKALGATD 76

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239
                  A ++  G+T    LR   +  PG  V +    GG+G +  + A+A+GA V+  
Sbjct: 3   QEQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAF 60

Query: 240 VSTKEKAAQAKDDGCHH 256
            +++ K   AK  G   
Sbjct: 61  TTSEAKREAAKALGADE 77

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ 215
           + P  AA+  +  +TA   L+R  +  PG  VL+Q
Sbjct: 1   LSPEEAAAFPVSFLTAYLALKRA-QARPGEKVLVQ 34

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTK 243
               I     T      +  KV+PG T ++    GGVG  +     + GA+ +IG    K
Sbjct: 6   KVCLIGCGFSTGYGAAVKTGKVKPGSTCVVF-GLGGVGLSVIMGCKSAGASRIIGIDLNK 64

Query: 244 EKAAQAKDDGCHH 256
           +K  +A   G   
Sbjct: 65  DKFEKAMAVGATE 77

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251
            G  VL+  A G V S + +     G  V GT  +  K A  + 
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 181 IDPVIAASIMLKGMTA---QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVI 237
           +D   A  I   G TA      L           +++  A+GGVGS      + LG  V+
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV 60

Query: 238 GTVSTKEKAAQAKDDGCHH 256
                +      K  G   
Sbjct: 61  AVSGRESTHEYLKSLGASR 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	100.0
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.97
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.97
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.97
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.96
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.95
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.94
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.94
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.94
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.93
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.71
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.71
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.7
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.7
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.68
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.67
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.63
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.62
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.6
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.58
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.57
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.57
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.57
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.56
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.56
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.53
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.53
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.53
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.52
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.49
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.47
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.41
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.41
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.4
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.38
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.35
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.1
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.73
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.59
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.39
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.38
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.27
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.82
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	95.62
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.43
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.33
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.32
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.19
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	95.07
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.89
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	94.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.65
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.53
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.4
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	94.15
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.0
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	93.93
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.93
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	93.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	93.66
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.36
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	93.35
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	93.28
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	92.92
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.84
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.83
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.8
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.77
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	92.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.18
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.02
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.88
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.84
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	91.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	91.7
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.62
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.57
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.45
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.44
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.36
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	91.11
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.1
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	91.07
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.02
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.92
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.91
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.88
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.76
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.73
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.69
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	90.65
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	90.37
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	90.08
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.98
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	89.83
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.82
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	89.67
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.57
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.53
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.44
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.2
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.19
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.19
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	89.1
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.6
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.52
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.41
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	88.11
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	87.78
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	87.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	87.5
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	87.41
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.23
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	86.79
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	86.52
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.17
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	85.87
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.24
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.23
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.7
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	84.69
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	84.36
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.79
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	83.79
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	83.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.16
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	82.93
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	82.86
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	82.68
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	82.55
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.49
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	82.09
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.07
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	81.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.38
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	81.29
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	80.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	80.56

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=220.27  Aligned_cols=147  Identities=28%  Similarity=0.503  Sum_probs=138.2

Q ss_pred             ceEEEEEcccCCCCceEEE-EeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           69 MVKAIRVYEHGDPEVLKWE-DVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      .|||++++++|+|+.++++ +++.|+|++|||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            5999999999999999986 68999999999999999999999999999997765 467899999999999999999999


Q ss_pred             cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe
Q 036416          147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ  215 (256)
Q Consensus       147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      |++||||++....+|+|+||++++++.++++|+++++++||+++++.+|+|+.+...+..+.|+++||.
T Consensus        82 ~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          82 FKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             CCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             cccCccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            999999999888789999999999999999999999999999999999999999888999999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-31  Score=207.99  Aligned_cols=143  Identities=36%  Similarity=0.588  Sum_probs=130.8

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG  150 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G  150 (256)
                      +++.++++|+|+.|++++.+.|+|++|||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            56889999999999999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             CEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHH--HhhhchhHHHHHHHHHHHcCCCCCCEEEE
Q 036416          151 DIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVI--AASIMLKGMTAQFLLRRCFKVEPGHTVLI  214 (256)
Q Consensus       151 d~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlI  214 (256)
                      |||+......|+|+||++++.+.++++|+++++++  ++++++...++++++.+ .++++|++|||
T Consensus        82 drV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          82 DRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             ceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            99988777789999999999999999999998864  45567777888887765 58999999998

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=5.9e-32  Score=216.57  Aligned_cols=144  Identities=22%  Similarity=0.251  Sum_probs=126.7

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      |+|+ +++   +++++++++|+|+|+++|||||+++++||++|++++.+....   ...|+++|||++|+|+++|+++++
T Consensus         3 maAV-l~g---~~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~   78 (178)
T d1e3ja1           3 LSAV-LYK---QNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   78 (178)
T ss_dssp             EEEE-EEE---TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             eEEE-EEc---CCcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCC
Confidence            5665 553   455999999999999999999999999999999988765322   357889999999999999999999


Q ss_pred             cCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416          147 RTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFL  199 (256)
Q Consensus       147 ~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~  199 (256)
                      |++||||++..                           ..+|+|+||+++|++.++++|+++++++++.++..+.|+|++
T Consensus        79 ~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a  158 (178)
T d1e3ja1          79 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA  158 (178)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHH
T ss_pred             CCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHH
Confidence            99999998642                           235899999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCEEEEecCC
Q 036416          200 LRRCFKVEPGHTVLIQAAA  218 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~  218 (256)
                      ++ .+++++|++|+|+||+
T Consensus       159 ~~-~~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         159 FE-AARKKADNTIKVMISC  176 (178)
T ss_dssp             HH-HHHHCCTTCSEEEEEC
T ss_pred             HH-HhCCCCCCEEEEEccc
Confidence            85 5799999999999976

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=5.3e-31  Score=210.38  Aligned_cols=146  Identities=29%  Similarity=0.392  Sum_probs=129.5

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      .|.||||+++++++.+  ++++++|.|.|++|||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++
T Consensus         2 ~P~tMkA~v~~~~g~p--l~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v   79 (175)
T d1llua1           2 LPQTMKAAVVHAYGAP--LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGV   79 (175)
T ss_dssp             CCSEEEEEEBCSTTSC--CEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cchhcEEEEEEeCCCC--CEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCc
Confidence            5788999999988776  888999999999999999999999999999999998764 5689999999999999999999


Q ss_pred             CccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416          145 TGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ  197 (256)
Q Consensus       145 ~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~  197 (256)
                      +++++||||....                           ..+|+|+||++++++.++++|++++++.++++..++.|++
T Consensus        80 ~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~  159 (175)
T d1llua1          80 TRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQIL  159 (175)
T ss_dssp             CSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHH
T ss_pred             cccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHH
Confidence            9999999998632                           1247999999999999999999999988888888999998


Q ss_pred             HHHHHHcCCCCCCEEEEe
Q 036416          198 FLLRRCFKVEPGHTVLIQ  215 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~  215 (256)
                      +.++ . ...+|++|||+
T Consensus       160 ~~~~-~-g~~~G~~VLVl  175 (175)
T d1llua1         160 DQMR-A-GQIEGRIVLEM  175 (175)
T ss_dssp             HHHH-T-TCCSSEEEEEC
T ss_pred             HHHH-h-CCCCCCEEEeC
Confidence            8874 3 44579999985

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.97  E-value=3.6e-31  Score=215.58  Aligned_cols=149  Identities=21%  Similarity=0.204  Sum_probs=135.9

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ..++++||+++.+++.|  +++++++.|+|+++||||||.++|||++|++.+.|......+|.++|||++|+|+++|+++
T Consensus         4 ~~~~~~kAav~~~~~~p--l~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           4 GKVIKCKAAVAWEANKP--LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             TSCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCceEEEEEEEecCCCC--cEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            34567889999987766  8999999999999999999999999999999999987777789999999999999999999


Q ss_pred             CccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEEC
Q 036416          145 TGRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPV  177 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~i  177 (256)
                      +++++||||++...                                               .+|+|+||++++...++++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~i  161 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEEC
Confidence            99999999987421                                               0389999999999999999


Q ss_pred             CCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe
Q 036416          178 PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ  215 (256)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      |+++++++++++.+++.|++.++......+.|++|||+
T Consensus       162 P~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         162 DPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999999988899999999985

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=212.09  Aligned_cols=148  Identities=21%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      ..++|||+++++++.+  ++++++|.|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~kAav~~~~g~~--l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~   80 (197)
T d2fzwa1           3 EVIKCKAAVAWEAGKP--LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVT   80 (197)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CceEEEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCce
Confidence            4567999999988777  89999999999999999999999999999999999877777999999999999999999999


Q ss_pred             ccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECC
Q 036416          146 GRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVP  178 (256)
Q Consensus       146 ~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip  178 (256)
                      .+++||||++...                                               ..|+|+||+++|+..++++|
T Consensus        81 ~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             ecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            9999999986420                                               02899999999999999999


Q ss_pred             CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe
Q 036416          179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ  215 (256)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      +++++++++.+.+++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999998776566789999985

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=210.14  Aligned_cols=151  Identities=23%  Similarity=0.207  Sum_probs=131.9

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ..|.+||++++..++....+++.+++.++++++|||||+.++|||++|++++.|.++...+|+++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            35778999999999888888988888777899999999999999999999999998877899999999999999999998


Q ss_pred             -CccCCCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhh
Q 036416          145 -TGRTVGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASI  189 (256)
Q Consensus       145 -~~~~~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l  189 (256)
                       +.+++||||....                                  ..+|+|+||+++|...++++|+++++++|+.+
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~  161 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVG  161 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESS
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHH
Confidence             5699999996421                                  12489999999999999999999999887655


Q ss_pred             chhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          190 MLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       190 ~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      ...+.|||+++. .+++++|++|+|+.
T Consensus       162 ~~~~~ta~~~l~-~~~vk~g~~Vvv~~  187 (192)
T d1piwa1         162 EAGVHEAFERME-KGDVRYRFTLVGYD  187 (192)
T ss_dssp             HHHHHHHHHHHH-HTCCSSEEEEECCH
T ss_pred             HHHHHHHHHHHH-HhCCCCCCEEEEEC
Confidence            445678999985 57999999999874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=5.8e-30  Score=208.86  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=128.8

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .++||||+++.+++.|  ++++++|+|+|+++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|++|+
T Consensus         5 ~~~~~KAaV~~~~g~p--l~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           5 KVIKCKAAIAWKTGSP--LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTCC
T ss_pred             CeEEEEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCce
Confidence            5678999999988766  899999999999999999999999999999999998764 4799999999999999999999


Q ss_pred             ccCCCCEEEEeCC---------------------------------------------------CCcceeeEEEecCCCe
Q 036416          146 GRTVGDIIAYAGG---------------------------------------------------AMGSYAEEQILPANKV  174 (256)
Q Consensus       146 ~~~~Gd~V~~~~~---------------------------------------------------~~G~~a~~~~v~~~~~  174 (256)
                      ++++||||++...                                                   ..|+|+||+++++..+
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            9999999986421                                                   0289999999999999


Q ss_pred             EECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          175 VPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      +++|++++++.++++.+++.+++.++..   +++|++|.|+.
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence            9999999999888888888888888753   47899998874

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=7.6e-30  Score=199.10  Aligned_cols=145  Identities=23%  Similarity=0.288  Sum_probs=130.0

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      .+|||+++++++++..+++++++.|+|++|||||||.++|||++|++.+.|.++. ...|.++|+|++|+|++  .+++.
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            3599999999998888889999999999999999999999999999998887654 56899999999999999  56778


Q ss_pred             cCCCCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          147 RTVGDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       147 ~~~Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      +++||+|.....     .+|+|+||+++|.+.++++|+++++ +|++++++.+|+|.++...++++ |++|||.|
T Consensus        80 ~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          80 FREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             cccCCEEEEecCccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            999999998753     2589999999999999999999984 68889999999999988888886 99999975

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=8.7e-30  Score=202.55  Aligned_cols=140  Identities=27%  Similarity=0.371  Sum_probs=125.8

Q ss_pred             EEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           71 KAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        71 ~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ||+++++++.|  +++++++.|++ ++||||||+.+++||++|++++.|.++.   +.+|+++|||++|+|+++|+++++
T Consensus         1 kA~~~~~~g~p--l~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~   78 (171)
T d1h2ba1           1 KAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEG   78 (171)
T ss_dssp             CEEEESSTTSC--CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             CEEEEEeCCCC--CEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCc
Confidence            68999988877  89999999986 6899999999999999999999987642   467999999999999999999999


Q ss_pred             cCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          147 RTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       147 ~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      +++||||++..                          ..+|+|+||+++|.+.++++|++++++.+++++..+.|+|+++
T Consensus        79 ~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al  158 (171)
T d1h2ba1          79 LEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL  158 (171)
T ss_dssp             CCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHH
T ss_pred             CCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHH
Confidence            99999998753                          1358999999999999999999999988888889999999998


Q ss_pred             HHHcCCCCCCEEEE
Q 036416          201 RRCFKVEPGHTVLI  214 (256)
Q Consensus       201 ~~~~~~~~g~~VlI  214 (256)
                      +. +++ .|++|||
T Consensus       159 ~~-~~~-~G~~VlI  170 (171)
T d1h2ba1         159 EK-GEV-LGRAVLI  170 (171)
T ss_dssp             HT-TCC-SSEEEEE
T ss_pred             Hh-cCC-CCCEEEe
Confidence            54 677 8999998

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=1e-28  Score=200.10  Aligned_cols=142  Identities=23%  Similarity=0.261  Sum_probs=122.9

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR  147 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~  147 (256)
                      ++|+|+++.+.+.+  +++++++.|+|++||||||+.++|||++|++++.|.++. ++|.++|||++|+|+++|+++++|
T Consensus         2 k~~~Aav~~~~g~~--l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~   78 (194)
T d1f8fa1           2 KDIIAAVTPCKGAD--FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTEL   78 (194)
T ss_dssp             EEEEEEEBCSTTCC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             ceeEEEEEcCCCCC--cEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeE
Confidence            35899999987765  899999999999999999999999999999999998765 489999999999999999999999


Q ss_pred             CCCCEEEEeCC------------------------------------------------CCcceeeEEEecCCCeEECCC
Q 036416          148 TVGDIIAYAGG------------------------------------------------AMGSYAEEQILPANKVVPVPS  179 (256)
Q Consensus       148 ~~Gd~V~~~~~------------------------------------------------~~G~~a~~~~v~~~~~~~ip~  179 (256)
                      ++||||+....                                                ..|+|+||++++..+++++|+
T Consensus        79 ~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          79 QVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             CTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             ccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            99999965210                                                026899999999999999999


Q ss_pred             CCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEE
Q 036416          180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIG  238 (256)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~  238 (256)
                      +++++++                         ++|.| +|++|++++|+|+.+|++.++
T Consensus       159 ~i~~~~~-------------------------~~i~g-~g~~g~~aiq~a~~~g~~~ii  191 (194)
T d1f8fa1         159 DFPFDQL-------------------------VKFYA-FDEINQAAIDSRKGITLKPII  191 (194)
T ss_dssp             TCCGGGG-------------------------EEEEE-GGGHHHHHHHHHHTSCSEEEE
T ss_pred             CCCcccE-------------------------EEEeC-cHHHHHHHHHHHHHcCCCEEE
Confidence            9886543                         44555 799999999999999996443

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=5.2e-29  Score=197.92  Aligned_cols=141  Identities=32%  Similarity=0.386  Sum_probs=119.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC-CCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++++++.|  +++++++.|+|++|||||||+++|||++|++++.+.. ....+|.++|||++|+|+++|+++++++
T Consensus         1 MkA~v~~~~g~p--l~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~   78 (171)
T d1rjwa1           1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (171)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEecCCCC--cEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCce
Confidence            899999988765  8999999999999999999999999999999887653 3456899999999999999999999999


Q ss_pred             CCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416          149 VGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR  201 (256)
Q Consensus       149 ~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  201 (256)
                      +||||....                           ..+|+|+||+++|.++++++|++++++.|+ +. ...++++.+.
T Consensus        79 vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~~~~  156 (171)
T d1rjwa1          79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFDRML  156 (171)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHHHHH
T ss_pred             eeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHHHHH
Confidence            999997532                           124899999999999999999999987654 33 4556666654


Q ss_pred             HHcCCCCCCEEEEec
Q 036416          202 RCFKVEPGHTVLIQA  216 (256)
Q Consensus       202 ~~~~~~~g~~VlI~g  216 (256)
                      . +.+ +|++|||+|
T Consensus       157 ~-~~~-~G~tVlViG  169 (171)
T d1rjwa1         157 K-GQI-NGRVVLTLE  169 (171)
T ss_dssp             T-TCC-SSEEEEECC
T ss_pred             h-cCC-CCCEEEEeC
Confidence            3 455 599999998

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=3.4e-29  Score=190.38  Aligned_cols=130  Identities=32%  Similarity=0.401  Sum_probs=119.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||++++++|++  +++++.+.|+|++|||+||++++|||++|++++.|.++. ..+|+++|||++|+|           
T Consensus         1 MkA~~~~~~G~~--l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP--LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------   67 (131)
T ss_dssp             CEEEEECSTTSC--EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------
T ss_pred             CcEEEEccCCCC--CEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------
Confidence            899999998876  899999999999999999999999999999999998765 468999999999999           


Q ss_pred             CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe
Q 036416          149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ  215 (256)
Q Consensus       149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  215 (256)
                      +||+|+++.. +|+|+||+.++++.++++|+++++++||++++.+.|||+++.+.+  +.|++||+.
T Consensus        68 vGd~V~~~~~-~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          68 EGRRYAALVP-QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             TTEEEEEECS-SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             ccceEEEEec-cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            3999998875 599999999999999999999999999999999999999997755  569999873

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.4e-29  Score=199.57  Aligned_cols=144  Identities=24%  Similarity=0.285  Sum_probs=120.5

Q ss_pred             ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCC
Q 036416           69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      .+.|+++++   |++++++++++|+|+++||||||.+++||++|++++.+...   ...+|.++|||++|+|+++|++++
T Consensus         7 ~~~a~V~~g---p~~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~   83 (185)
T d1pl8a1           7 NNLSLVVHG---PGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (185)
T ss_dssp             CCEEEEEEE---TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             CCEEEEEeC---CCeEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence            478999994   45699999999999999999999999999999999875422   245789999999999999999999


Q ss_pred             ccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH
Q 036416          146 GRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       146 ~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      +|++||||++..                           ..+|+|+||++++.++++++|+++++++++.+++  .+|++
T Consensus        84 ~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl--~~a~~  161 (185)
T d1pl8a1          84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPL--EKALE  161 (185)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEG--GGHHH
T ss_pred             eecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHH--HHHHH
Confidence            999999998642                           2358899999999999999999999999876653  34555


Q ss_pred             HHHHHcCCCCCCEEEEecCCCh
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGG  220 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~  220 (256)
                      ++. .+++++|++||| | +|+
T Consensus       162 a~~-~~~~~~G~~VlI-g-~GP  180 (185)
T d1pl8a1         162 AFE-TFKKGLGLKIML-K-CDP  180 (185)
T ss_dssp             HHH-HHHTTCCSEEEE-E-CCT
T ss_pred             HHH-HhCCCCCCEEEE-E-eCC
Confidence            553 357899999998 5 454

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=7.3e-29  Score=199.05  Aligned_cols=142  Identities=22%  Similarity=0.266  Sum_probs=121.2

Q ss_pred             cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416           66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT  145 (256)
Q Consensus        66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~  145 (256)
                      ++++|||+++++++.+  ++++++++|+|+++||||||.++|||++|++++.|.++...+|+++|||++|+|+++|++|+
T Consensus         1 m~~k~kA~v~~~~~~p--l~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~   78 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQP--LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKR   78 (184)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCB
T ss_pred             CCceEEEEEEecCCCC--cEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccc
Confidence            3567999999988766  89999999999999999999999999999999999888777999999999999999999986


Q ss_pred             -----ccCCCCEEEEeC-----------------------------------CCCcceeeEEEec-CCCeEECCCCCCHH
Q 036416          146 -----GRTVGDIIAYAG-----------------------------------GAMGSYAEEQILP-ANKVVPVPSSIDPV  184 (256)
Q Consensus       146 -----~~~~Gd~V~~~~-----------------------------------~~~G~~a~~~~v~-~~~~~~ip~~~~~~  184 (256)
                           .+++||+|+...                                   ..+|+|+||++++ +..++++|++++++
T Consensus        79 ~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~  158 (184)
T d1vj0a1          79 DLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHR  158 (184)
T ss_dssp             CTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEE
T ss_pred             ccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHH
Confidence                 468999998632                                   1268999999996 57899999999875


Q ss_pred             HHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       185 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      ++      +.+|++++. .+++++|++|||+.
T Consensus       159 ~p------l~~A~~a~~-~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         159 LP------LKEANKALE-LMESREALKVILYP  183 (184)
T ss_dssp             EE------GGGHHHHHH-HHHHTSCSCEEEEC
T ss_pred             HH------HHHHHHHHH-HhCCCcCCEEEEee
Confidence            32      335666664 46899999999984

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=1.1e-27  Score=191.32  Aligned_cols=141  Identities=28%  Similarity=0.433  Sum_probs=116.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC--------CCCCCCCCCcccEEEEEEeC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--------PAKMPFTPGMEAVGEVVAVG  141 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~~lG~e~~G~V~~vG  141 (256)
                      |||++++++|.|  +++++++.|+|++||||||+.++|||++|++++.|.++        ...+|+++|||++|+|+++|
T Consensus         1 MKA~~~~~~G~p--l~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g   78 (177)
T d1jvba1           1 MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG   78 (177)
T ss_dssp             CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred             CeEEEEEeCCCC--CEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeec
Confidence            899999999876  89999999999999999999999999999999998653        24589999999999999999


Q ss_pred             CCCCccCCCCEEEEeCC--------------------------CCcceeeEEEecCCC-eEECCCCCCHHHHhhhchhHH
Q 036416          142 PGLTGRTVGDIIAYAGG--------------------------AMGSYAEEQILPANK-VVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       142 ~~v~~~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~-~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      ++++++++||||++...                          .+|+|+||++++... ++++|+..+.+.++.+..++.
T Consensus        79 ~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~  158 (177)
T d1jvba1          79 DEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEAN  158 (177)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHH
T ss_pred             cCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHH
Confidence            99999999999986431                          248999999998765 556655544444443345788


Q ss_pred             HHHHHHHHHcCCCCCCEEEE
Q 036416          195 TAQFLLRRCFKVEPGHTVLI  214 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI  214 (256)
                      ++++++.. +++ .|++|||
T Consensus       159 ~a~~~~~~-~~~-~G~~VlI  176 (177)
T d1jvba1         159 EAIDNLEN-FKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHT-TCC-CSEEEEE
T ss_pred             HHHHHHHh-hcc-cCCceEC
Confidence            88888854 455 5999998

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.95  E-value=2.2e-27  Score=192.83  Aligned_cols=146  Identities=19%  Similarity=0.234  Sum_probs=121.3

Q ss_pred             CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      ...++|||+++..++.+  +++++++.|+|+++||||||.++|||++|++++.|.++.+ +|.++|||++|+|+++|+++
T Consensus         4 ~~~~k~KAavl~~~~~~--l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~~-~P~i~GHE~~G~Vv~vG~~v   80 (198)
T d2jhfa1           4 GKVIKCKAAVLWEEKKP--FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGV   80 (198)
T ss_dssp             TSCEEEEEEEBCSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTC
T ss_pred             CCceEEEEEEEecCCCC--CEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcccc-cceecccceeEEEEecCccc
Confidence            34567999999977655  9999999999999999999999999999999999988754 89999999999999999999


Q ss_pred             CccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEEC
Q 036416          145 TGRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPV  177 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~i  177 (256)
                      +++++||||++...                                               ..|+|+||+++|+.+++++
T Consensus        81 ~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~  160 (198)
T d2jhfa1          81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEEC
Confidence            99999999976320                                               1279999999999999999


Q ss_pred             CCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416          178 PSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA  216 (256)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g  216 (256)
                      |+.++++.++....++.+...+.   ..+++|++|+|+.
T Consensus       161 p~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi~  196 (198)
T d2jhfa1         161 DAAFALDPLITHVLPFEKINEGF---DLLRSGESIRTIL  196 (198)
T ss_dssp             CTTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEEE
Confidence            99998877655444433333322   2357899998864

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=1.5e-29  Score=199.49  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=132.8

Q ss_pred             cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416           68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      .+|||+++.+++++..+++++++.|+|++|||||||+|+|||++|++.+.|.++. ...|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            4699999999999999999999999999999999999999999999999998764 45678999999999998  56778


Q ss_pred             cCCCCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChH
Q 036416          147 RTVGDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV  221 (256)
Q Consensus       147 ~~~Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~v  221 (256)
                      +++||+|+....     .+|+|+||+++|++.++++|+++++++||.+++.++|||.++.. .+...+++|||+|++|++
T Consensus        80 ~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga~G~v  158 (162)
T d1tt7a1          80 FAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGRV  158 (162)
T ss_dssp             CCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCCSSEE
T ss_pred             cccceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCcceE
Confidence            999999988753     36899999999999999999999999999999999999976543 234555789999887764

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=3.7e-30  Score=209.62  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=127.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCC-------CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEP-------GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP  142 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~  142 (256)
                      +||+++++++   ++++++++.|++       .++||+|||.+++||++|++++.|.++. .+|+++|||++|+|+++|+
T Consensus         2 ~kA~v~~~~~---~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~   77 (201)
T d1kola1           2 NRGVVYLGSG---KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGR   77 (201)
T ss_dssp             EEEEEEEETT---EEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECT
T ss_pred             cEEEEEeCCC---ceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccc
Confidence            6999999654   599999999865       4699999999999999999999998875 4899999999999999999


Q ss_pred             CCCccCCCCEEEEeC------------------------------------CCCcceeeEEEecCC--CeEECCCCCCHH
Q 036416          143 GLTGRTVGDIIAYAG------------------------------------GAMGSYAEEQILPAN--KVVPVPSSIDPV  184 (256)
Q Consensus       143 ~v~~~~~Gd~V~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~~  184 (256)
                      +|++|++||||.+..                                    ..+|+|+||+++|..  +++++|++.+..
T Consensus        78 ~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~  157 (201)
T d1kola1          78 DVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAM  157 (201)
T ss_dssp             TCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHH
T ss_pred             ccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChH
Confidence            999999999997431                                    124899999999863  699999987777


Q ss_pred             HHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC
Q 036416          185 IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA  234 (256)
Q Consensus       185 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga  234 (256)
                      +++++...+.++++++.. ++.+.|+    +| +|++|++++|+||.+||
T Consensus       158 ~~~~~~~~~~~~~~a~~~-~~~~~g~----~g-~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         158 EKINIAEVVGVQVISLDD-APRGYGE----FD-AGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HTCCHHHHHTEEEECGGG-HHHHHHH----HH-HTCSCEEEECTTCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCCCeE----Ee-eCHHHHHHHHHHHHcCC
Confidence            776666666666665533 2344443    57 69999999999999986

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=1e-29  Score=203.06  Aligned_cols=141  Identities=19%  Similarity=0.161  Sum_probs=114.2

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+++.+++   ++++++.|.|+|+++|||||+.++|||++|++.+.+..+...+|+++|||++|+|+++|+++++|++
T Consensus         1 MKa~v~~~~~---~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~v   77 (177)
T d1jqba1           1 MKGFAMLGIN---KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKP   77 (177)
T ss_dssp             CEEEEEEETT---EEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEeCC---CeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecC
Confidence            8999999654   5999999999999999999999999999999877655555568999999999999999999999999


Q ss_pred             CCEEEEeC-----------------------------CCCcceeeEEEecC--CCeEECCCCCCHHHHhhhchhHHHHHH
Q 036416          150 GDIIAYAG-----------------------------GAMGSYAEEQILPA--NKVVPVPSSIDPVIAASIMLKGMTAQF  198 (256)
Q Consensus       150 Gd~V~~~~-----------------------------~~~G~~a~~~~v~~--~~~~~ip~~~~~~~aa~l~~~~~ta~~  198 (256)
                      ||||++..                             ..+|+|+||+++|.  .+++++|+++++++++......   +.
T Consensus        78 GdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~~---~~  154 (177)
T d1jqba1          78 GDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYHG---FD  154 (177)
T ss_dssp             TCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEES---GG
T ss_pred             CCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHHH---HH
Confidence            99998532                             12589999999996  3689999999998876543322   11


Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLL  225 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~a  225 (256)
                      .+        ++.|+|+| .|++|+.+
T Consensus       155 ~~--------~~~vlv~g-~gp~gl~a  172 (177)
T d1jqba1         155 HI--------EEALLLMK-DKPKDLIK  172 (177)
T ss_dssp             GH--------HHHHHHHH-HCCTTCSE
T ss_pred             Hh--------cCceEEEC-CCHHHhhe
Confidence            11        34477777 48777654

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.94  E-value=8.8e-30  Score=202.83  Aligned_cols=158  Identities=20%  Similarity=0.267  Sum_probs=134.0

Q ss_pred             cceEEEEEcccCCCC-ce--EEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC----------CCCCCCCCcccE
Q 036416           68 NMVKAIRVYEHGDPE-VL--KWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP----------AKMPFTPGMEAV  134 (256)
Q Consensus        68 ~~~~a~~~~~~~~~~-~l--~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~p~~lG~e~~  134 (256)
                      .||||++++++|.|. .+  +..++|.|+|+++||||||++++||++|+++++|..+.          ...|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            369999999999874 34  44567778889999999999999999999999987543          246788999999


Q ss_pred             EEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH-HcCCCCCCEEE
Q 036416          135 GEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR-CFKVEPGHTVL  213 (256)
Q Consensus       135 G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~Vl  213 (256)
                      |+|+++|.++..++.||+|.......|+|+||+.+|++.++++|+.++.+  +++++..+|||+++.. ..++++||+||
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~--~a~~~~~~ta~~~l~~~~~~~~~g~~vl  159 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSK--ANGKPNGLTDAKSIETLYDGTKPLHELY  159 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHH--HTTCSCCCCCCCCEEEECCSSSCHHHHH
T ss_pred             cccccccccccccccccceeccccccccccceeeehhhhccCCCccchhh--hhccchHHHHHHHHHHHhcCCCCCCEEE
Confidence            99999999999999999999888778999999999999999999976544  4456788899988754 45799999999


Q ss_pred             Eec-CCChHHHHHHH
Q 036416          214 IQA-AAGGVGSLLCQ  227 (256)
Q Consensus       214 I~g-a~g~vG~~ai~  227 (256)
                      |+| |+|++|++++|
T Consensus       160 i~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         160 QDGVANSKDGKQLIT  174 (175)
T ss_dssp             HHHHHTGGGSCEEEE
T ss_pred             EECccchhhhheEEe
Confidence            998 45789988776

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.1e-27  Score=181.57  Aligned_cols=129  Identities=16%  Similarity=0.224  Sum_probs=114.6

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT  148 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~  148 (256)
                      |||+++++++++..+++++++.|+|++|||+|||.|+|||+.|++.+.|.++. ..+|.++|+|++|+|+++|.  ..++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            89999999999988999999999999999999999999999999999998655 46899999999999999766  4799


Q ss_pred             CCCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416          149 VGDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL  200 (256)
Q Consensus       149 ~Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l  200 (256)
                      +||+|++...     .+|+|+||+++|.+.++++|+++|+++||+++++++||+..+
T Consensus        79 ~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          79 AGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             TTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             ceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999987653     259999999999999999999999999999999999987654

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.94  E-value=2.4e-27  Score=192.49  Aligned_cols=144  Identities=23%  Similarity=0.280  Sum_probs=121.2

Q ss_pred             ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416           67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG  146 (256)
Q Consensus        67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~  146 (256)
                      ..||||+++++++.+  +++++++.|+|+++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|+++++
T Consensus         6 ~~~~KAav~~~~g~~--l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           6 DITCKAAVAWEPHKP--LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             CEEEEEEEBSSTTSC--CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTCCS
T ss_pred             ceEEEEEEEccCCCC--CEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccccc
Confidence            457999999977655  999999999999999999999999999999999998875 48999999999999999999999


Q ss_pred             cCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCC
Q 036416          147 RTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPS  179 (256)
Q Consensus       147 ~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~  179 (256)
                      +++||||++...                                               ..|+|+||+.++...++++|+
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~  162 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDP  162 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECT
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCC
Confidence            999999986320                                               127899999999999999999


Q ss_pred             CCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416          180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL  224 (256)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~  224 (256)
                      .++.+.++...+...          .+++++.|+|.| +|++|++
T Consensus       163 ~~~~~~~~~~~~~~~----------~v~~~~~vlv~G-~G~iGl~  196 (198)
T d1p0fa1         163 KINVNFLVSTKLTLD----------QINKAFELLSSG-QGVRSIM  196 (198)
T ss_dssp             TSCGGGGEEEEECGG----------GHHHHHHHTTTS-SCSEEEE
T ss_pred             CCCHHHHHHhhcchh----------hcCCCCEEEEEC-CCcceEE
Confidence            999877655444322          234455688888 6888753

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.3e-26  Score=182.12  Aligned_cols=132  Identities=23%  Similarity=0.341  Sum_probs=110.1

Q ss_pred             eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416           70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV  149 (256)
Q Consensus        70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~  149 (256)
                      |||+....+++|  |++++++.|+|++|||||||.++|||++|++.+.|.++...+|+++|||++|+|+++|++|+++++
T Consensus         1 m~a~~~~~~~~p--l~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~v   78 (179)
T d1uufa1           1 IKAVGAYSAKQP--LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAP   78 (179)
T ss_dssp             CEEEEBSSTTSC--CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEccCCCC--CEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCC
Confidence            799999987766  999999999999999999999999999999999998887789999999999999999999999999


Q ss_pred             CCEEEEeC-----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416          150 GDIIAYAG-----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM  194 (256)
Q Consensus       150 Gd~V~~~~-----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~  194 (256)
                      ||+|.+..                                   ..+|+|+||+++|+++++++|+......   +...+.
T Consensus        79 GdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~~---~a~~l~  155 (179)
T d1uufa1          79 GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMI---RADQIN  155 (179)
T ss_dssp             TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEEE---CGGGHH
T ss_pred             CCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcChh---HhchhH
Confidence            99996432                                   1148999999999999999996643222   123556


Q ss_pred             HHHHHHHHHcCCC
Q 036416          195 TAQFLLRRCFKVE  207 (256)
Q Consensus       195 ta~~~l~~~~~~~  207 (256)
                      ++++++.. +.++
T Consensus       156 ~a~~a~~~-a~v~  167 (179)
T d1uufa1         156 EAYERMLR-GDVK  167 (179)
T ss_dssp             HHHHHHHT-TCSS
T ss_pred             HHHHHHHH-hCcc
Confidence            77777643 4443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=9.4e-18  Score=132.84  Aligned_cols=76  Identities=47%  Similarity=0.781  Sum_probs=73.3

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||+++++++|||++|.+.+++++||+|||+||+|++|++++|+|+..|++|++++++++|+++++++|||+
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~   76 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQ   76 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeE
Confidence            5899999999999999999998889999999999999999999999999999999999999999999999999985

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=130.95  Aligned_cols=76  Identities=34%  Similarity=0.462  Sum_probs=73.0

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||+++++++|||+++.+.+++++|++|||+||+|++|++++|+|+.+|++|++++++++|+++++++|+|+
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~   76 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHE   76 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccc
Confidence            5899999999999999999988889999999999998899999999999999999999999999999999999974

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.9e-17  Score=112.61  Aligned_cols=74  Identities=23%  Similarity=0.259  Sum_probs=68.2

Q ss_pred             CCHHHHhhhchhHHHHHHHHH---HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLR---RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +|++||+.++++++|||.++.   +....++|++|||+||+|++|.+++|+|+.+|++|+++++++++.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCC
Confidence            589999999999999997765   44567899999999999999999999999999999999999999999999996

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.70  E-value=2.4e-16  Score=120.80  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=101.0

Q ss_pred             ceEEEEEccc--CCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416           69 MVKAIRVYEH--GDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL  144 (256)
Q Consensus        69 ~~~a~~~~~~--~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v  144 (256)
                      +.|+|.+.+.  |.|  +++++++.++|+|++||||||+.|.++++....   ...+ .....++..+++|+|++  ++.
T Consensus         3 ~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~---~~~~-~~~g~~~~g~~vg~Vv~--S~~   76 (147)
T d1v3va1           3 KAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRI---ASKR-LKEGAVMMGQQVARVVE--SKN   76 (147)
T ss_dssp             EEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHH---HGGG-SCTTSBCCCCEEEEEEE--ESC
T ss_pred             ccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccc---cccc-cccCCccccceEEEEEE--eCC
Confidence            3578888775  444  569999999999999999999999999765332   2212 12334566688999988  778


Q ss_pred             CccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHH-----HHhhhchhHHHH-HHHHHHHcCCCCCCEEEE
Q 036416          145 TGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPV-----IAASIMLKGMTA-QFLLRRCFKVEPGHTVLI  214 (256)
Q Consensus       145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~-----~aa~l~~~~~ta-~~~l~~~~~~~~g~~VlI  214 (256)
                      ++|++||+|++.    ++|+||.+++...+.++|+..+..     ..+++....+|| |..+..  ..+.|++|++
T Consensus        77 ~~f~~GD~V~g~----~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~--~~k~Getvv~  146 (147)
T d1v3va1          77 SAFPAGSIVLAQ----SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN--GANLGKAVVT  146 (147)
T ss_dssp             TTSCTTCEEEEC----CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT--TCCSSEEEEE
T ss_pred             CcccCCCEEEEc----cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhC--CCCCCCEEEe
Confidence            899999999865    679999999999999998765432     345566777775 546644  4578999987

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=5e-17  Score=127.99  Aligned_cols=75  Identities=36%  Similarity=0.469  Sum_probs=71.4

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++||+++++++|||++++. +++++||+|||+||+|++|++++|+|+.+|++|++++++++|+++++++|+|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~   75 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE   75 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce
Confidence            5899999999999999999975 79999999999999999999999999999999999999999999999999984

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=4e-17  Score=129.09  Aligned_cols=76  Identities=24%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             CCHHHHhhhchhHHHHHHHH---HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLL---RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|++|||+++++++|||+++   .+.++.++|++|||+||+|+||.+++|+|+.+|++|++++++++|.++++++|+|+
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce
Confidence            68999999999999999664   45678899999999999999999999999999999999999999999999999985

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.3e-16  Score=125.03  Aligned_cols=73  Identities=29%  Similarity=0.326  Sum_probs=69.9

Q ss_pred             HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          184 VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|||+++++++|||+++.+.+++++||+|||+||+|++|++++|+|+.+|++|+++++++++.++++++|+++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~   73 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY   73 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccc
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999974

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=1.1e-15  Score=119.30  Aligned_cols=74  Identities=27%  Similarity=0.362  Sum_probs=70.0

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||.+++++.|||++++. +++++||+|+|+| +|++|++++|+||.+|++|++++++++|+++++++|+|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~-~~~~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~   74 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQ-TNARPGQWVAISG-IGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASL   74 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEee-ccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccc
Confidence            5899999999999999999965 7999999999999 599999999999999999999999999999999999984

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=120.41  Aligned_cols=74  Identities=26%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++||.+++++.|+|+++.+.+++++||+|+|+| +|++|++++|+|+.+|+ +|++++++++|++++++||||+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~   76 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE   76 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE
Confidence            57899999999999999998889999999999999 59999999999999997 6888889999999999999985

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.58  E-value=2.1e-15  Score=119.63  Aligned_cols=70  Identities=40%  Similarity=0.510  Sum_probs=66.7

Q ss_pred             hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++++++|||++|.+.+++++||+|||+||+|++|++++|+|+..|++||+++++++|.++++++|+++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~   77 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA   77 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh
Confidence            4678899999999999999999999999999999999999999999999999999999999999999984

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.58  E-value=3.3e-15  Score=117.98  Aligned_cols=75  Identities=27%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      .++++||.+++++.|+|+++.+.+++++||+|+|+| +|++|++++|+|+.+|+ +||+++.+++|+++++++|||+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~   77 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE   77 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE
Confidence            358999999999999999998888999999999999 69999999999999996 8999999999999999999985

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.57  E-value=4.3e-15  Score=117.06  Aligned_cols=74  Identities=23%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++||.+++++.|+|+++.+.+++++||+|+|+| +|++|++++|+|+.+|+ +|++++.+++|++++++||+++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~   76 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD   76 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc
Confidence            57899999999999999998889999999999998 69999999999999999 6889999999999999999974

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.57  E-value=3e-15  Score=117.95  Aligned_cols=73  Identities=29%  Similarity=0.263  Sum_probs=68.3

Q ss_pred             HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +.+||.+.|++.|+|+++.+.+++++||+|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|||+
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~   75 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE   75 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE
Confidence            4568999999999999998889999999999999 69999999999999998 7999999999999999999985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.6e-15  Score=116.77  Aligned_cols=73  Identities=29%  Similarity=0.360  Sum_probs=67.8

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +.+.||.+.+++.|+|++++. +++++||+|+|+| +|++|++++|+|+.+|++|++++.+++|+++++++|||+
T Consensus         2 p~e~AApl~cag~Ta~~al~~-~~~~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~   74 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVG-LGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH   74 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEC-CCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE
Confidence            557788999999999999975 6999999999999 599999999999999999999999999999999999984

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.57  E-value=2e-15  Score=120.49  Aligned_cols=76  Identities=25%  Similarity=0.361  Sum_probs=68.2

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe-cCCChHHHHHHHHHHHcCCeEEEEeCCh----hhHHHHHhCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ-AAAGGVGSLLCQWANALGATVIGTVSTK----EKAAQAKDDGCH  255 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-ga~g~vG~~ai~la~~~ga~Vi~~~~~~----~~~~~~~~~Ga~  255 (256)
                      +|+++||+++++++|||++|.+.+++++|++|+|+ ||+|++|++++|+||.+|++||++++++    ++.++++++|+|
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            58999999999999999999998999999998886 7789999999999999999999998653    456678999998


Q ss_pred             C
Q 036416          256 H  256 (256)
Q Consensus       256 ~  256 (256)
                      +
T Consensus        81 ~   81 (189)
T d1gu7a2          81 Q   81 (189)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.8e-15  Score=119.51  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             CCHHHHhhhchhHHHHHHHHH---HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLR---RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+.+|++++++++|||++++   .....+.+++|||+||+|++|.+++|+||.+|++||+++++++|.++++++|+|+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccc
Confidence            588999999999999997754   3334455679999999999999999999999999999999999999999999974

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.56  E-value=6.8e-15  Score=114.71  Aligned_cols=74  Identities=31%  Similarity=0.387  Sum_probs=69.8

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||+++++++|||++++. +++++|++|+|+| +|++|++++|+|+..|++|++++.+++|++++|++|+++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~-~~~~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADL   74 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcce
Confidence            5899999999999999999975 6999999999998 699999999999999999999999999999999999974

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1e-14  Score=114.04  Aligned_cols=75  Identities=27%  Similarity=0.410  Sum_probs=68.7

Q ss_pred             CCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +.++..+|.+.|+..|+|++++ .+++++||+|+|+| +|++|++++|+|+.+|+++++++.+++|+++++++|+|+
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~-~~~~~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~   77 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE   77 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE
T ss_pred             cccHHHHHHHHhHHHHHHHHHH-HhCCCCCCEEEEec-cchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE
Confidence            4567888889999999999995 57999999999999 599999999999999999999999999999999999984

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.53  E-value=9e-15  Score=115.21  Aligned_cols=74  Identities=24%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++++|+.++..+.|+|++++ .+++++||+|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|||+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~-~a~~~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~   75 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAE-LADIEMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD   75 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHH-HTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHH-HhCCCCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc
Confidence            578999999999999999985 47999999999998 59999999999999998 7999999999999999999974

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.53  E-value=1.6e-14  Score=113.72  Aligned_cols=74  Identities=28%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++||.+++++.|+|+++.+.+++++||+|+|+|+ |++|++++++++..|+ +|++++.+++|+++++++|+++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~   76 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE   76 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee
Confidence            578999999999999999998899999999999995 9999999999999986 8999999999999999999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.53  E-value=1.8e-14  Score=113.20  Aligned_cols=74  Identities=23%  Similarity=0.131  Sum_probs=69.6

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++||.+++++.|+|+++.+.+++++||+|+|+| +|++|+.++++++..|+ +|++++++++|+++++++||||
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~   76 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD   76 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcE
Confidence            57899999999999999998889999999999999 69999999999999988 7999999999999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=1.4e-14  Score=114.65  Aligned_cols=74  Identities=30%  Similarity=0.306  Sum_probs=68.6

Q ss_pred             CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +++.+|.+.++++|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~   76 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL   76 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEEC-CCccchhheecccccccccccccccccccccccccccceE
Confidence            45678888999999999999888999999999999 59999999999999999 7999999999999999999974

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.49  E-value=5.9e-14  Score=109.71  Aligned_cols=75  Identities=31%  Similarity=0.492  Sum_probs=69.9

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+.+||.+++++.|||++++. +++++||+|+|+|++|++|++++|+++.+|+ +|++++.+++|+++++++|+|+
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~-~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~   76 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY   76 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce
Confidence            5789999999999999999955 7999999999999889999999999999996 8999999999999999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.47  E-value=6.3e-14  Score=110.15  Aligned_cols=75  Identities=21%  Similarity=0.175  Sum_probs=68.0

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++.|+.+++++.|||+++.+.+++++|++|+|+| +|++|++++|+|+.+|+ .|++++.+++|++++++||+++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~   76 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH   76 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE
Confidence            356788999999999999998889999999999999 59999999999999999 4667788899999999999974

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.45  E-value=2.1e-13  Score=106.48  Aligned_cols=73  Identities=27%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||.+ .++.+||+++.. +++++||+|+|+| +|++|++++|+|+.+|++|++++.+++|+++++++|+++
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~-~~~~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~   73 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRR-AGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV   73 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHH-HTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHH-hCCCCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE
Confidence            578998854 467789999855 6999999999998 799999999999999999999999999999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.5e-13  Score=104.24  Aligned_cols=73  Identities=29%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +|+++||.+ .++.+||++++. +++++||+|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|||+
T Consensus         1 vS~e~Aal~-epla~a~~a~~~-~~~~~gd~VlI~G-~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~   74 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRR-GGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL   74 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHH-HTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHH-hCCCCCCEEEEEC-CCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc
Confidence            578998854 577889999865 6999999999999 59999999999999999 7999999999999999999974

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.41  E-value=4.8e-13  Score=104.72  Aligned_cols=73  Identities=29%  Similarity=0.353  Sum_probs=66.6

Q ss_pred             HHHHhhhchhHHHHHHHHHHHc-CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          183 PVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       183 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      +.++|.++++++|||+++.+.. .+++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|+
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~   80 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH   80 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce
Confidence            5788999999999999998866 489999999999 59999999999999998 6888899999999999999974

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=1.1e-13  Score=107.99  Aligned_cols=66  Identities=27%  Similarity=0.352  Sum_probs=57.5

Q ss_pred             hhHHHHHH---HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416          191 LKGMTAQF---LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       191 ~~~~ta~~---~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++++|||.   +|.+....++|++|||+||+|++|.+++|+||.+|++||+++++++|.++++++|+|+
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~   71 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE   71 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc
Confidence            45667764   4555556778889999999999999999999999999999999999999999999984

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.3e-13  Score=107.23  Aligned_cols=75  Identities=28%  Similarity=0.427  Sum_probs=62.1

Q ss_pred             CCHHHHhhhchhHHHHHHHHHHHcCCCCC--CEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHH-HHHhCCCCC
Q 036416          181 IDPVIAASIMLKGMTAQFLLRRCFKVEPG--HTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAA-QAKDDGCHH  256 (256)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~-~~~~~Ga~~  256 (256)
                      +|+.+.| ++++++|||+++.+.+++++|  ++|||+||+|++|++++|+||..|++ |++++.++++.. .++++|+|+
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            3455543 688999999999999999988  88999999999999999999999995 666677766655 556899984

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=1.5e-12  Score=104.04  Aligned_cols=71  Identities=28%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416          184 VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH  256 (256)
Q Consensus       184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~  256 (256)
                      ++.++|...+.|||+++. .+++++||+|||+| +|++|++++++|+.+|+ +|++++.+++|+++++++|+++
T Consensus         2 ~d~~~l~d~~~ta~~a~~-~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~   73 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI   73 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE
T ss_pred             chHHhcccHHHHHHHHHH-HhCCCCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE
Confidence            567888999999999985 57999999999999 69999999999999998 7999999999999999999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.38  E-value=0.00042  Score=53.46  Aligned_cols=44  Identities=25%  Similarity=0.242  Sum_probs=39.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      =+|++++|.||+|++|..+++.+...|++|+.+++++++.+.+.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            37999999999999999999999999999999999988876553

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.24  E-value=0.00032  Score=53.76  Aligned_cols=46  Identities=28%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +..+|+|+| +|-+|+.++..|+.+||.|.+.|.+.++++.++++|.
T Consensus        28 ~pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          28 PPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            346899999 5999999999999999999999999999999999875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00043  Score=56.35  Aligned_cols=42  Identities=26%  Similarity=0.455  Sum_probs=38.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      +|+++||.||++|+|.+++......|++|+.+++++++++.+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   54 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999999887655

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.88  E-value=0.00097  Score=54.67  Aligned_cols=41  Identities=17%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ  248 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~  248 (256)
                      +|+++||.||++++|.++++.....|++|+.+++++++.+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA   64 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            57999999999999999999999999999999999877543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.73  E-value=0.0019  Score=48.55  Aligned_cols=44  Identities=25%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      +..+|+|+| +|-+|+.++..|+.+|+.|.+.|.+.++++.+++.
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~   74 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL   74 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh
Confidence            457899999 59999999999999999999999999999888754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0045  Score=46.45  Aligned_cols=51  Identities=25%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      .+|....-..+|++|||+| +||.+.+++..+..+|++|+.+.++.+|.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l   57 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEEL   57 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHH
Confidence            3455543346789999999 69999999999999999999999998886654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.39  E-value=0.0037  Score=48.51  Aligned_cols=47  Identities=34%  Similarity=0.429  Sum_probs=43.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH  255 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~  255 (256)
                      .|.+|+|.| .|.+|..+++.+...|++|++.+.+.++.....++|++
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc
Confidence            789999999 79999999999999999999999999988888888764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.38  E-value=0.0032  Score=50.96  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|+++||.||++++|.++++.....|++|+.++++.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            489999999999999999999999999999988763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.0075  Score=45.11  Aligned_cols=49  Identities=10%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHH-hCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAK-DDG  253 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~-~~G  253 (256)
                      .++.++.+|+|+| +||.+.+++..++..|+ +|.++.++.+|.+.+. .++
T Consensus        12 ~~~~~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~   62 (167)
T d1npya1          12 YHLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG   62 (167)
T ss_dssp             TTCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh
Confidence            4666889999999 69999999999999998 7999999988877654 344

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0042  Score=41.80  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|++|+|+| .|..|+.+++++...|++|++.+..+
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            578899999 59999999999999999999999853

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.009  Score=48.79  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=43.7

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+.+.+++++|++||=+|  .|.|..++.+|+..|++|++++.+++..+++++
T Consensus        53 ~~~~~l~l~~G~~VLDiG--CG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVG--CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHHTTTTCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEec--CcchHHHHHHHhcCCcceEEEeccHHHHHHHHH
Confidence            344667899999999999  677889999999999999999999988777654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.049  Score=40.37  Aligned_cols=58  Identities=26%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             HHHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416          195 TAQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG  253 (256)
Q Consensus       195 ta~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G  253 (256)
                      +.+.++.+..+ .-.|++|+|.| .|-+|..+++.++..|++|++++.++-+.-.+.--|
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG   67 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG   67 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT
T ss_pred             hHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc
Confidence            34444444444 45899999999 899999999999999999999999886644443333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.032  Score=41.63  Aligned_cols=49  Identities=22%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      +....-..+|.+|+|.| +|+.+.+++..+...+.+|+++.++.++.+.+
T Consensus         9 l~~~~~~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l   57 (171)
T d1p77a1           9 LQRLNWLRPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKEL   57 (171)
T ss_dssp             HHHTTCCCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHH
Confidence            44432345788999999 69999999888877777999999998887655

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.32  E-value=0.021  Score=40.57  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=37.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDG  253 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~G  253 (256)
                      +|+|.| .|.+|..+++.+...|.+|++++.++++.+.++ ++|
T Consensus         2 ~IvI~G-~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~   44 (132)
T d1lssa_           2 YIIIAG-IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID   44 (132)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh
Confidence            689999 599999999999999999999999999988775 355

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.22  E-value=0.017  Score=43.16  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+.+|.+||..|  .|.|..+..+|+ .|++|+++|.+++-++.+++
T Consensus        16 l~~~~~~rvLd~G--CG~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          16 LNVVPGARVLVPL--CGKSQDMSWLSG-QGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HCCCTTCEEEETT--TCCSHHHHHHHH-HCCEEEEEEECHHHHHHHHH
T ss_pred             cCCCCCCEEEEec--CcCCHHHHHHHH-cCCceEeecccHHHHHHHHH
Confidence            4789999999999  567888999997 59999999999988888865

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.19  E-value=0.011  Score=42.07  Aligned_cols=43  Identities=14%  Similarity=0.181  Sum_probs=38.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      +++|.| .|-+|..+++.+...|.+|++++.++++.+.+++.|.
T Consensus         2 ~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~   44 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYAT   44 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCS
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCC
Confidence            478888 6999999999999999999999999999998887764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.097  Score=41.88  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+++++|++||=.|  .|.|..++.+|+..|  ++|++++.+++..+.+++
T Consensus        97 ~~l~i~pG~~VLDiG--~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          97 MMLDVKEGDRIIDTG--VGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEECC--CCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            557999999999998  344888889999875  589999999998877753

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.06  E-value=0.021  Score=44.51  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH----HhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA----KDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~----~~~Ga~  255 (256)
                      ..+++++|++||.+|  ++.|..++-+|+..|.+|++++..++-.+.+    +++|.+
T Consensus        72 ~~L~l~~g~~VLeIG--sGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~  127 (215)
T d1jg1a_          72 EIANLKPGMNILEVG--TGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK  127 (215)
T ss_dssp             HHHTCCTTCCEEEEC--CTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HhhccCccceEEEec--CCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc
Confidence            456899999999999  7789999999998898899999987655544    445543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.89  E-value=0.065  Score=39.44  Aligned_cols=47  Identities=30%  Similarity=0.321  Sum_probs=39.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga  254 (256)
                      -.+.+|||+| +|.+|..+++.+...|+ +++++.++.+|.+ +++++|.
T Consensus        22 l~~~~ilviG-aG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~   70 (159)
T d1gpja2          22 LHDKTVLVVG-AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG   70 (159)
T ss_dssp             CTTCEEEEES-CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC
T ss_pred             cccCeEEEEC-CCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc
Confidence            4688999999 59999999999999999 6888999877754 6677774

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.68  E-value=0.041  Score=42.56  Aligned_cols=48  Identities=21%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      +.+++++|++||-.|  +|.|..++.+|+..|  .+|++++.+++..+.+++
T Consensus        69 ~~l~l~~g~~VLdiG--~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIG--GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhhhccccceEEEec--CccchhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            557899999999999  445889999999876  489999999887777654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.063  Score=40.28  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=36.2

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA  247 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~  247 (256)
                      ++....---.+.+|+|+| +|+.+.+++..+...|+ +++.+.+++++.+
T Consensus         8 ~l~~~~~~l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~   56 (182)
T d1vi2a1           8 AIKESGFDIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFD   56 (182)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHH
T ss_pred             HHHHcCCCcCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHH
Confidence            344432223678999999 69999999999998998 6888888766544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.53  E-value=0.035  Score=44.93  Aligned_cols=52  Identities=23%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..+.+.+++++|++||=+| || .|..+..+++..|++|++++.+++..+++++
T Consensus        42 ~~~~~~l~l~~g~~VLDiG-CG-~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIG-CG-WGTTMRRAVERFDVNVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEES-CT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEec-CC-chHHHHHHHHhCceeEEEecchHHHHHHHHH
Confidence            3455667899999999999 44 4556788899999999999999988777654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.40  E-value=0.075  Score=39.61  Aligned_cols=49  Identities=20%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      +|.+...--+|++|+|+| +|+++.+++..+...| +|+++.++.+|.+.+
T Consensus         8 ~l~~~~~~~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHHCCCCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHH
Confidence            344433334788999999 6999998887775555 899999998886644

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.15  E-value=0.053  Score=44.09  Aligned_cols=50  Identities=28%  Similarity=0.334  Sum_probs=41.4

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+.+.+++++|++||=+|  .|.|..+..+|+..|++|++++.+++..++++
T Consensus        52 ~~~~~l~l~~G~~VLDiG--CG~G~~~~~~a~~~g~~v~git~s~~q~~~a~  101 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIG--CGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHHTTCCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEec--CcchHHHHHHHHhcCcceeeccchHHHHHHHH
Confidence            344667999999999999  55666788999999999999999988766553

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.00  E-value=0.16  Score=39.67  Aligned_cols=47  Identities=30%  Similarity=0.419  Sum_probs=40.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC  254 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga  254 (256)
                      -.|.+|+|.| .|.+|..+++++...|++|++++.+..+.+.+. +.|+
T Consensus        37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~   84 (230)
T d1leha1          37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA   84 (230)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCC
Confidence            3689999999 799999999999999999999999888776554 4554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.078  Score=41.41  Aligned_cols=51  Identities=35%  Similarity=0.577  Sum_probs=41.5

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+...+++++|++||=+|  .|.|..+..+++..|++|++++.+++-.+.+++
T Consensus        24 ~l~~~~~l~pg~~VLDiG--CG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLG--SGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHTCCCTTCEEEEET--CTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEc--CCCCHHHHHHHHhcCCEEEEEecccchhhHHHH
Confidence            355778999999999888  556777888998889999999999887766543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.93  E-value=0.087  Score=36.41  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +..+..++++|+|.| .|.+|+-.++.++..|.+|..+.+.+.
T Consensus        15 ~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          15 EELDYEPGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHCCSCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHhhCCCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence            335677899999999 599999999999999999999998643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=93.75  E-value=0.088  Score=41.05  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=39.1

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++++|++||-+|  +|.|..++.+|+. +.+|++++.+++-.+.+++
T Consensus        64 ~~L~l~~g~~VLdIG--~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          64 DELDLHKGQKVLEIG--TGIGYYTALIAEI-VDKVVSVEINEKMYNYASK  110 (224)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHH
T ss_pred             HHhhhcccceEEEec--CCCCHHHHHHHHH-hcccccccccHHHHHHHHH
Confidence            556899999999999  4578888888875 6799999999888777765

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.16  Score=40.17  Aligned_cols=70  Identities=21%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             CeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          173 KVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       173 ~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      ..+.+.+++.|-.    .....|...  .+..  ..++|++||=.| || .|..++.+++ .|++|++++.+++-.+.++
T Consensus        89 ~~i~i~pg~aFGT----G~H~TT~l~l~~l~~--~~~~g~~VLDiG-cG-sG~l~i~aa~-~g~~V~gvDis~~av~~A~  159 (254)
T d2nxca1          89 IPLVIEPGMAFGT----GHHETTRLALKALAR--HLRPGDKVLDLG-TG-SGVLAIAAEK-LGGKALGVDIDPMVLPQAE  159 (254)
T ss_dssp             EEEECCCC---------CCSHHHHHHHHHHHH--HCCTTCEEEEET-CT-TSHHHHHHHH-TTCEEEEEESCGGGHHHHH
T ss_pred             eEEEEccccccCc----cccchhhHHHHHHHh--hcCccCEEEEcc-cc-hhHHHHHHHh-cCCEEEEEECChHHHHHHH
Confidence            4455666665533    223333332  2222  368999999998 45 4777776655 6899999999988777665


Q ss_pred             h
Q 036416          251 D  251 (256)
Q Consensus       251 ~  251 (256)
                      +
T Consensus       160 ~  160 (254)
T d2nxca1         160 A  160 (254)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.36  E-value=0.096  Score=35.09  Aligned_cols=48  Identities=13%  Similarity=0.121  Sum_probs=39.0

Q ss_pred             CCCCCEEEEecCCChHHHHH-HHHHHHcCCeEEEEeCC-hhhHHHHHhCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLL-CQWANALGATVIGTVST-KEKAAQAKDDGC  254 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~a-i~la~~~ga~Vi~~~~~-~~~~~~~~~~Ga  254 (256)
                      .+..+++.+.| -|++|+.+ +++++..|.+|.+.|.. ....+.+++.|+
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi   54 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA   54 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC
T ss_pred             chhCCEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCC
Confidence            45678899999 79999887 89999999999999986 334566777786

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.35  E-value=0.079  Score=41.03  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +...+.+++|++||=+|  .|.|..+..+++ .+++|+++|.+++-++.++
T Consensus         8 l~~~~~~~~~~rILDiG--cGtG~~~~~la~-~~~~v~gvD~S~~~l~~A~   55 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIG--AGAGHTALAFSP-YVQECIGVDATKEMVEVAS   55 (234)
T ss_dssp             HHHHHTCCTTCEEEEES--CTTSHHHHHHGG-GSSEEEEEESCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeC--CcCcHHHHHHHH-hCCeEEEEeCChhhhhhhh
Confidence            55678999999999998  567888888887 4789999999987766654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.11  Score=40.47  Aligned_cols=44  Identities=27%  Similarity=0.373  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~  250 (256)
                      ++++|++||-.|  .|.|..++.+|+..|.  +|++++..++-.+.++
T Consensus        73 ~l~~g~~VLdiG--~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVG--SGSGILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEET--CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            789999999999  6778999999998764  8999999987766553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.23  E-value=0.14  Score=35.71  Aligned_cols=42  Identities=12%  Similarity=0.007  Sum_probs=34.6

Q ss_pred             HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .....-..+++|+|.| +|.+|+-+++.+..+|.+|..+...+
T Consensus        22 ~~~~~~~~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          22 KQKTVDPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             HHHHTCTTCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HHHhhccCCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence            3444456678999999 59999999999999999999997753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.062  Score=40.44  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=33.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ...+.+|+|+| +|+.|+.++..+..+|.+|+..+..+
T Consensus        40 ~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccC
Confidence            45678999999 59999999999999999999999764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.92  E-value=0.077  Score=41.35  Aligned_cols=44  Identities=20%  Similarity=0.370  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC-------CeEEEEeCChhhHHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALG-------ATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g-------a~Vi~~~~~~~~~~~~~  250 (256)
                      ++++|++||.+|  ++.|..++.+++..|       .+|+.++..++-.+.++
T Consensus        77 ~l~~g~~VLeIG--tGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          77 HLKPGARILDVG--SGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             TCCTTCEEEEES--CTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEec--CCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            789999999999  566777777777653       38999999877655553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.084  Score=36.42  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             CCCC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          206 VEPG-HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       206 ~~~g-~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +.++ .+|.|.| .|-+|.+.++.|+.+|.++++.+.+++
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3444 5699999 599999999999999999999997643

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.83  E-value=0.16  Score=39.95  Aligned_cols=35  Identities=37%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -.|.+|+|.| .|.+|..+++++...|++|+++...
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence            4789999999 7999999999999999999887753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.18  Score=33.21  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             CEEEEecCCChHHHHH-HHHHHHcCCeEEEEeCCh-hhHHHHHhCCCC
Q 036416          210 HTVLIQAAAGGVGSLL-CQWANALGATVIGTVSTK-EKAAQAKDDGCH  255 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~a-i~la~~~ga~Vi~~~~~~-~~~~~~~~~Ga~  255 (256)
                      .+|-+.| -|++|+.+ +++++..|+.|.+.|..+ +..+.++++|+.
T Consensus         2 ~~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~   48 (89)
T d1j6ua1           2 MKIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIP   48 (89)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCC
T ss_pred             cEEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCe
Confidence            3577888 79999865 688899999999999875 446678888864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.77  E-value=0.082  Score=40.36  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|+| .|.+|..++++++..|++|++.+....
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhcccccccCcccc
Confidence            478999999 799999999999999999999987643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.58  E-value=0.12  Score=35.72  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..++..++|+|.| +|.+|+-+++.+...|.+|..+.+.+
T Consensus        17 ~~l~~p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             hccCCCCEEEEEC-CchHHHHHHHHHHhccccceeeehhc
Confidence            3556678999999 59999999999999999999999753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.51  E-value=0.13  Score=35.28  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|||.| .|.+|..-++.+...||+|++++..
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecc
Confidence            578999999 5999999999999999998888764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.18  E-value=0.092  Score=40.67  Aligned_cols=36  Identities=31%  Similarity=0.217  Sum_probs=32.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +.+++|+|+| +|+.|+.++..++..|.+|++++..+
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence            5678999999 59999999999999999999998764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.02  E-value=0.13  Score=35.27  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +..++++|.| +|.+|+-+++.+..+|.+|..+.+.+.
T Consensus        20 ~~p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          20 EVPKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hcCCeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence            3457899999 599999999999999999999987653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.88  E-value=0.63  Score=34.04  Aligned_cols=44  Identities=32%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA  249 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~  249 (256)
                      -+-.|++++|.| -|-+|.-+++-+|.+|++|++++.+|-+.-.+
T Consensus        19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQA   62 (163)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHH
Confidence            346899999999 89999999999999999999999998654333

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.84  E-value=0.16  Score=35.28  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .++++++++|.| +|.+|+-++..++..|.+|..+.+.+
T Consensus        26 ~~~~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          26 GLRPQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             HCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hhhcCCeEEEEC-cchhHHHHHHHhhcccceEEEEeecc
Confidence            356789999999 59999999999999999999998764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.74  E-value=0.14  Score=40.62  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++||++||=.|  .|.|.+++.+|+..|  .+|++++.+++..+.+++
T Consensus        79 ~~l~i~pG~rVLEiG--~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          79 MRCGLRPGMDILEVG--VGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             --CCCCTTCEEEEEC--CTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEee--eeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            446899999999998  455888889998875  489999999988887754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=91.70  E-value=0.16  Score=40.36  Aligned_cols=50  Identities=10%  Similarity=0.018  Sum_probs=40.7

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      +.....+++|++||=+|  .|.|..+..+++..|++|++++.++...+.+++
T Consensus        59 l~~~~~l~~~~~vLDiG--cG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLG--AGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEET--CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeC--CCCcHHHhhhhccCCcEEEEEeccchhhhhhhc
Confidence            44556889999999998  457778889998889999999999887766653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.62  E-value=0.11  Score=41.28  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ......+|+|+| +|..|+.++..+...|.+|.+++..+
T Consensus        26 ~~~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            345567999999 59999999998888999999998753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.57  E-value=0.11  Score=38.97  Aligned_cols=35  Identities=31%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|...+++++..|++|++.++.+
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEec-cccccccceeeeeccccccccccccc
Confidence            578999999 79999999999999999999999864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.45  E-value=0.097  Score=39.96  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|..++++++..|++|++.++..
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeee-cccccccccccccccceeeeccCCcc
Confidence            468999999 79999999999999999999999753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.44  E-value=0.096  Score=37.80  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .|.+|||.|| |.+|..-+..+...||+|+++..
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999995 99999999999999999888864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=0.086  Score=33.97  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      ++|.|.| +|-+|.+.++-|+.+|.++++.+.+++
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            4799999 599999999999999999999997543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=91.11  E-value=0.16  Score=38.77  Aligned_cols=48  Identities=21%  Similarity=0.176  Sum_probs=38.1

Q ss_pred             HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +.+.++++++++||=+| || .|..+..+++ .|++|++++.+++-.+.++
T Consensus         7 ll~~~~l~~~~rVLDiG-cG-~G~~~~~l~~-~~~~v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVA-TG-GGHVANAFAP-FVKKVVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHHTCCSCCEEEEET-CT-TCHHHHHHGG-GSSEEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEec-cc-CcHHHHHHHH-hCCEEEEEECCHHHHhhhh
Confidence            33567999999999999 34 7888887775 4889999999987666654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.10  E-value=0.26  Score=39.08  Aligned_cols=34  Identities=24%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.|.+|+|.| .|.||..+++.+...|++|+++..
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            3789999999 799999999999999999988764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.14  Score=39.49  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~  243 (256)
                      +.+|||.||+|-+|..+++.+...|.  +|+++++++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            46899999999999999998887785  799998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.02  E-value=0.27  Score=34.64  Aligned_cols=38  Identities=11%  Similarity=0.065  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .++.+.+|+|.| +|.+|+-++..++.+|.+|..+...+
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeecc
Confidence            567789999999 59999999999999999999999754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.92  E-value=0.13  Score=39.00  Aligned_cols=34  Identities=29%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      .|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCc
Confidence            578999999 7999999999999999999999975

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.16  Score=39.19  Aligned_cols=47  Identities=17%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ....+.+|.+||..| || .|..+..+|+ .|++|+++|.+++-++.+++
T Consensus        39 ~~l~~~~~~rvLd~G-CG-~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          39 TFLKGKSGLRVFFPL-CG-KAVEMKWFAD-RGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHTTCCSCEEEETT-CT-TCTHHHHHHH-TTCEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeC-CC-CcHHHHHHHh-CCCcEEEEeCCHHHHHHHHH
Confidence            334678999999998 44 5888888887 69999999999887776653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.88  E-value=0.22  Score=40.44  Aligned_cols=33  Identities=30%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      -.++||.||+|-+|..++..+...|.+|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            467999999999999999999999999999975

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.76  E-value=0.22  Score=34.41  Aligned_cols=36  Identities=22%  Similarity=0.105  Sum_probs=31.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +..++++|.| +|.+|+=.++..+.+|.+|..+...+
T Consensus        20 ~~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeec
Confidence            3458899999 59999999999999999999998754

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.73  E-value=0.16  Score=41.11  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS  241 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~  241 (256)
                      .|.+|+|.| .|.||..+++.+...|++|+++..
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence            578999999 799999999999999999998874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.69  E-value=0.21  Score=34.71  Aligned_cols=35  Identities=17%  Similarity=0.090  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..++++|.| +|.+|+-+++.+..+|++|..+.+.+
T Consensus        22 ~p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEEC-CCchHHHHHHHHHhhCcceeEEEecc
Confidence            347899999 59999999999999999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.21  Score=34.24  Aligned_cols=35  Identities=26%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..++|+|.| +|.+|+-+++.++.+|.+|..+.+.+
T Consensus        20 ~p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEEEC-CChhhHHHHHHhhccccEEEEEeecc
Confidence            347899999 59999999999999999999999864

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=90.57  E-value=0.54  Score=37.44  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=40.8

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....++++.+|+... +|..|++++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus        53 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~  108 (292)
T d2bhsa1          53 KRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAE  108 (292)
T ss_dssp             HTTSCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCE
T ss_pred             HhCCcCCCceeeeec-ccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCC
Confidence            334556666665555 799999999999999997555554   57788999999985

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.37  E-value=0.34  Score=38.53  Aligned_cols=48  Identities=27%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++||++||=.|  .|.|.+++.+|+..|.  +|+.++.+++..+.+++
T Consensus        90 ~~l~i~PG~~VLE~G--~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          90 HEGDIFPGARVLEAG--AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHTTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEecC--cCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            457999999999888  6779999999999874  89999999998887764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.08  E-value=0.28  Score=41.52  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~  251 (256)
                      +..++++|++++=.|  .|+|..+.++|+..|+ +|++++.++.-.+.+++
T Consensus       210 ~~l~Lkpgd~fLDLG--CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         210 QQCQLKKGDTFMDLG--SGVGNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHTTCCTTCEEEEES--CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHhCCCCCCEEEeCC--CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            556999999988887  7889999999999997 79999999887776653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.98  E-value=0.23  Score=33.94  Aligned_cols=35  Identities=20%  Similarity=0.157  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      ..++++|.| +|.+|+-+++.++.+|.+|..+.+.+
T Consensus        20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence            348899999 59999999999999999999998754

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.71  Score=37.98  Aligned_cols=53  Identities=25%  Similarity=0.285  Sum_probs=41.9

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ....+++++.|+... +|..|.+++..|+.+|.+.+++..   +++|.+.++.+||+
T Consensus        90 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~  145 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAE  145 (355)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCE
T ss_pred             HcCCcccCceEEEec-ccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCe
Confidence            344567777766665 799999999999999997666553   47789999999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.82  E-value=0.33  Score=36.07  Aligned_cols=46  Identities=11%  Similarity=0.028  Sum_probs=35.7

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++|++||=.|  .|.|..++.+|+. +.+|++++.+++..+.+++
T Consensus        28 ~l~~~~g~~VLDiG--cGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          28 LAEPGKNDVAVDVG--CGTGGVTLELAGR-VRRVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHCCCTTCEEEEES--CTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEE--CCeEccccccccc-ceEEEEecCCHHHHHHHHH
Confidence            35899999998887  4556677777764 6699999999887776643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.38  Score=39.37  Aligned_cols=48  Identities=29%  Similarity=0.432  Sum_probs=40.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~  251 (256)
                      ..++++||++||=.|  .|.|.+++.+|+..|.  +|+.++.+++..+.+++
T Consensus        92 ~~l~i~pG~rVLE~G--tGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          92 SMMDINPGDTVLEAG--SGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHTCCTTCEEEEEC--CTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEec--ccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            446999999999888  4559999999999875  89999999988877653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.59  E-value=0.27  Score=35.17  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      .+|.|+|+.|.+|...+..++..|.+|.+.+++++......
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~   50 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI   50 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh
Confidence            57999997799999999999999999999999866544433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.57  E-value=0.21  Score=34.65  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +..++++|.| +|-+|+=+++....+|.+|.++.+.+.
T Consensus        23 ~~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            4568999999 599999999999999999999987643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.53  E-value=0.26  Score=34.39  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=31.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +..++++|.| .|.+|+=+++..+.+|.+|..+...+
T Consensus        24 ~~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4468999999 59999999999999999999998754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.44  E-value=0.24  Score=40.52  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ....+|||.||+|-+|..++..+...|.+|++++..
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            356789999999999999999999999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.32  Score=33.77  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .++++|.| .|.+|+-+++.++.+|.+|+.+.+.+
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeecc
Confidence            47899999 59999999999999999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.19  E-value=0.26  Score=34.20  Aligned_cols=34  Identities=18%  Similarity=0.103  Sum_probs=30.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      ..++++|.| +|.+|+-.+++++.+|.+|..+.++
T Consensus        19 ~P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence            456899999 5999999999999999999988764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.19  E-value=0.25  Score=37.07  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.+|.|.| .|.+|...++.++..|++|+..++...
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEEEEeeccc
Confidence            578999999 799999999999999999999997543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.51  Score=38.49  Aligned_cols=47  Identities=21%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~  250 (256)
                      ...+++++++|+=.|  .|.|..+.++|+..++ ++++++.+++..+.++
T Consensus       145 ~~~~l~~~~~vlD~G--cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         145 DEIKMTDDDLFVDLG--SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHSCCCTTCEEEEET--CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHcCCCCCCEEEEcC--CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            556899999999988  6789999999999988 6999999988776664

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=88.60  E-value=0.8  Score=33.60  Aligned_cols=57  Identities=18%  Similarity=-0.025  Sum_probs=44.5

Q ss_pred             hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .+|++....+..|....---.|++|+|.|-+.-+|.-...++...||+|+.+.....
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~   72 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK   72 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccc
Confidence            356666666666665543457999999998888999999999999999988876543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.52  E-value=0.64  Score=36.10  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHH-HHcCCeEEEEeC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWA-NALGATVIGTVS  241 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la-~~~ga~Vi~~~~  241 (256)
                      -.|.+|+|.| .|.||..+++.+ +..|++|+++..
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence            4689999999 799999999877 578999988774

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.41  E-value=0.42  Score=35.64  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      .|.++.|.| .|.+|..++++++..|++|++.++...
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cceeeeecc-ccchhHHHHHHhhhccceEEeecCCCC
Confidence            578999999 799999999999999999999997643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=88.11  E-value=0.36  Score=36.32  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      |.++.|+| .|.+|...+++++..|++|+..+...
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccceEEee-cccchHHHHHHHHhhccccccccccc
Confidence            79999999 79999999999999999999998753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.78  E-value=0.42  Score=36.43  Aligned_cols=45  Identities=11%  Similarity=0.174  Sum_probs=36.9

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHH
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~  250 (256)
                      ..++||++||=.|  .|.|..+..+++..+ .+|++++.+++..+.++
T Consensus        52 l~lkpg~~VLDlG--cG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~   97 (209)
T d1nt2a_          52 LKLRGDERVLYLG--AASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL   97 (209)
T ss_dssp             CCCCSSCEEEEET--CTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH
T ss_pred             CCCCCCCEEEEeC--CcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH
Confidence            5789999999999  355678888888875 48999999998877664

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.54  E-value=0.29  Score=38.81  Aligned_cols=45  Identities=20%  Similarity=0.086  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+++|++||-.+  .++|..++.+|+.-+++|++++.+++-.+++++
T Consensus       104 ~~~~g~~VlD~~--aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~  148 (260)
T d2frna1         104 VAKPDELVVDMF--AGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE  148 (260)
T ss_dssp             HCCTTCEEEETT--CTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH
T ss_pred             hcCCccEEEECc--ceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHH
Confidence            468999999887  566777788887655699999999988877753

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.50  E-value=0.3  Score=37.88  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~  251 (256)
                      ...++||++||=.|  .+.|..+..+|+..|.  +|++++.+++..+.+++
T Consensus        68 ~l~i~pG~~VLDlG--aGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~  116 (227)
T d1g8aa_          68 NFPIKPGKSVLYLG--IASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             CCCCCTTCEEEEET--TTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             ccccCCCCEEEEec--cCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            34789999999998  4668899999999874  89999999888776653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.41  E-value=0.47  Score=35.62  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .++++++||=+|  .|.|..+..+++ .|++|+++|.+++-.+.+++
T Consensus        34 ~l~~~~~ILDiG--cG~G~~~~~la~-~~~~v~giD~S~~~i~~ak~   77 (226)
T d1ve3a1          34 YMKKRGKVLDLA--CGVGGFSFLLED-YGFEVVGVDISEDMIRKARE   77 (226)
T ss_dssp             SCCSCCEEEEET--CTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCEEEEEC--CCcchhhhhHhh-hhcccccccccccchhhhhh
Confidence            467889999998  455888888887 58999999999887777654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.91  Score=33.40  Aligned_cols=58  Identities=16%  Similarity=-0.000  Sum_probs=45.3

Q ss_pred             hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416          187 ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE  244 (256)
Q Consensus       187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~  244 (256)
                      +.+|++..+.+..|....---.|.+|+|.|.+.-+|.-+..+....||+|+.+.....
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~   74 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA   74 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc
Confidence            3456666666666665533348999999998888999999999999999999887543

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.79  E-value=0.89  Score=37.94  Aligned_cols=50  Identities=20%  Similarity=0.135  Sum_probs=39.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ++++|++|+- ..+|..|.+++..|+.+|.+++++..   ++.|.+.++.+||+
T Consensus       140 ~~~~g~~VVe-aSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAe  192 (382)
T d1wkva1         140 RVEKGSLVAD-ATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQ  192 (382)
T ss_dssp             TSCTTCEEEE-ECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             ccCCCCEEEE-eCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcc
Confidence            5778876544 44799999999999999998666654   46788899999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.42  Score=35.71  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      .|.+|.|+| .|.+|..++++++..|++|+..+...
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence            578999999 79999999999999999999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.17  E-value=0.55  Score=32.26  Aligned_cols=36  Identities=19%  Similarity=0.074  Sum_probs=31.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      +.+.+++|.| .|.+|+-+++.+...|.+|..+.+.+
T Consensus        30 ~~~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence            3457899999 59999999999999999999998764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=0.28  Score=37.77  Aligned_cols=44  Identities=14%  Similarity=-0.071  Sum_probs=37.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD  252 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~  252 (256)
                      .+|.+||=+|  .|.|..+..+++..+.+|++++.+++-.+.+++.
T Consensus        52 ~~g~~VLdIG--cG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~   95 (229)
T d1zx0a1          52 SKGGRVLEVG--FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW   95 (229)
T ss_dssp             TTCEEEEEEC--CTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHH
T ss_pred             cCCCeEEEee--ccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHH
Confidence            6789999998  6778888999987777999999999888887653

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.24  E-value=1.5  Score=35.33  Aligned_cols=53  Identities=28%  Similarity=0.305  Sum_probs=41.1

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ...++.+...+|...+|..|.+++..|+..|.+.+++..   ++.|.+.++.+|++
T Consensus        58 ~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~  113 (320)
T d1z7wa1          58 KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVE  113 (320)
T ss_dssp             TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             cCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcc
Confidence            345666666666666899999999999999997555553   47788999999984

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=85.23  E-value=1.4  Score=35.30  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ..+.++++|+... +|.-|.+++..|+..|.+.+++..   ++.|.+.++.+||+
T Consensus        56 g~~~~~~~vv~~S-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~  109 (310)
T d1y7la1          56 GTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVN  109 (310)
T ss_dssp             TSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             CCCCCCceeeeec-CCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCc
Confidence            4567787776666 799999999999999997554443   36788889999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.70  E-value=0.45  Score=37.81  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      |+|+| +|..|+.++.-|...|++|++++..
T Consensus        19 VlVIG-~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVG-SGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEEEecC
Confidence            89999 5999999999999999999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=84.69  E-value=0.62  Score=35.39  Aligned_cols=46  Identities=24%  Similarity=0.257  Sum_probs=38.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC  254 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga  254 (256)
                      ..++.+||=.|  .|.|..+..+++ .|++|++++.+++-++.+++.+.
T Consensus        40 ~~~~~~vLDiG--cG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~   85 (246)
T d2avna1          40 LKNPCRVLDLG--GGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKGV   85 (246)
T ss_dssp             CCSCCEEEEET--CTTCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHTC
T ss_pred             cCCCCEEEEEC--CCCchhcccccc-cceEEEEeecccccccccccccc
Confidence            56788998888  448999998886 59999999999999999987654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.36  E-value=0.99  Score=32.06  Aligned_cols=46  Identities=17%  Similarity=0.088  Sum_probs=36.8

Q ss_pred             HHHHHHHHHcCCCCCCEEEEe--cCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416          195 TAQFLLRRCFKVEPGHTVLIQ--AAAGGVGSLLCQWANALGATVIGTVSTK  243 (256)
Q Consensus       195 ta~~~l~~~~~~~~g~~VlI~--ga~g~vG~~ai~la~~~ga~Vi~~~~~~  243 (256)
                      |....+.  .+..++..|+|+  | .|-+|+-+++.+...|++|..++..+
T Consensus        27 t~~d~l~--~~~~~~~~vvi~d~g-gg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVMD--GKKKIGKRVVILNAD-TYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CHHHHHH--TCSCCCSEEEEEECC-CSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHhc--CccccCCceEEEecC-CChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4444442  467889999887  5 48999999999999999999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.79  E-value=0.87  Score=32.74  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=28.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCC
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVST  242 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~  242 (256)
                      ..+++|+|+|| |.+|+=++..+...||+ |+.+.+.
T Consensus        43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence            35778999995 99999999888889995 7677654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.79  E-value=0.72  Score=35.62  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHh
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ...+++|++||=.|  .|.|..+..+|+.. +..|++++.+++-.+.+++
T Consensus        69 ~l~ikpG~~VLDlG--cGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~  116 (230)
T d1g8sa_          69 VMPIKRDSKILYLG--ASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCTTCEEEEES--CCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCCEEEEeC--EEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            35789999999999  45677888888864 3589999999988777764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.63  E-value=1.4  Score=32.56  Aligned_cols=46  Identities=15%  Similarity=0.061  Sum_probs=36.2

Q ss_pred             HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +.....++++||=.|  .|.|..++.+++ .+.+|++++.++.-.+.++
T Consensus        46 ~~l~~~~~~~VLDiG--cG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~   91 (194)
T d1dusa_          46 ENVVVDKDDDILDLG--CGYGVIGIALAD-EVKSTTMADINRRAIKLAK   91 (194)
T ss_dssp             HHCCCCTTCEEEEET--CTTSHHHHHHGG-GSSEEEEEESCHHHHHHHH
T ss_pred             HhCCcCCCCeEEEEe--ecCChhHHHHHh-hccccceeeeccccchhHH
Confidence            456788999999988  566777777775 5679999999988777765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.16  E-value=0.7  Score=35.75  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416          209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST  242 (256)
Q Consensus       209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~  242 (256)
                      ..+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus        30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            46899999 79999999999999999 67777653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.93  E-value=0.62  Score=37.00  Aligned_cols=45  Identities=20%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416          204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      .+.+.+.+||=.|  .|.|..++.+|+. |++|++++.+++-++.+++
T Consensus        52 l~~~~~~~vLD~G--cG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~   96 (292)
T d1xvaa_          52 LRQHGCHRVLDVA--CGTGVDSIMLVEE-GFSVTSVDASDKMLKYALK   96 (292)
T ss_dssp             HHHTTCCEEEESS--CTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             hhhcCCCEEEEec--CCCcHHHHHHHHc-CCeeeeccCchHHHHHHHH
Confidence            3445678999888  5678888899875 8999999999887766643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.86  E-value=1.4  Score=32.52  Aligned_cols=41  Identities=24%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK  250 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~  250 (256)
                      +++| +||=+| | |.|..+..+++ .|++|++++.+++-++.++
T Consensus        29 ~~~g-rvLDiG-c-G~G~~~~~la~-~g~~v~gvD~s~~~l~~a~   69 (198)
T d2i6ga1          29 VAPG-RTLDLG-C-GNGRNSLYLAA-NGYDVTAWDKNPASMANLE   69 (198)
T ss_dssp             SCSC-EEEEET-C-TTSHHHHHHHH-TTCEEEEEESCHHHHHHHH
T ss_pred             CCCC-cEEEEC-C-CCCHHHHHHHH-HhhhhccccCcHHHHHHHH
Confidence            4555 899998 4 48988888886 5999999999988777654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=82.68  E-value=1.1  Score=32.11  Aligned_cols=39  Identities=13%  Similarity=0.067  Sum_probs=31.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhH
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKA  246 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~  246 (256)
                      ++..+|.|+|+ |.+|..++.++...+. +++.++.++++.
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            45678999995 9999988888877775 898888776553

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=82.55  E-value=0.89  Score=36.80  Aligned_cols=58  Identities=14%  Similarity=0.144  Sum_probs=41.4

Q ss_pred             HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ++.+.....-.+..+|+... +|..|.+++..|+..|.+++++..   +++|.+.++.+||+
T Consensus        63 ~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~  123 (331)
T d1tdja1          63 YAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGE  123 (331)
T ss_dssp             HHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCE
T ss_pred             HHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCE
Confidence            33443333334555566665 799999999999999997666664   36788899999985

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.49  E-value=0.56  Score=37.66  Aligned_cols=31  Identities=32%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          211 TVLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      -|+|+| +|..|+.++.-|...|++|++++..
T Consensus        21 DVvVIG-aG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVG-AGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            389999 6999999999998999999999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.09  E-value=1.8  Score=33.52  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=28.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHH-HHcCCeEEEEeCC
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWA-NALGATVIGTVST  242 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la-~~~ga~Vi~~~~~  242 (256)
                      .|.+|+|.| .|.||..+++++ +..|++|+++...
T Consensus        31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          31 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence            789999999 799999999876 5679998887653

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.07  E-value=3.2  Score=32.59  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416          203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH  255 (256)
Q Consensus       203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~  255 (256)
                      ...+++|.+|+..+ +|..|.+++..|+..|.+++++..   ++.+.+.++.+|++
T Consensus        55 ~g~~~~~~~vv~as-sGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~  109 (302)
T d1fcja_          55 RGVLKPGVELVEPT-NGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGAN  109 (302)
T ss_dssp             HTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCE
T ss_pred             cCCCCCCceEEEec-cccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccc
Confidence            34677777766655 799999999999999986554443   46778888999974

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.72  E-value=1.5  Score=31.16  Aligned_cols=38  Identities=21%  Similarity=0.206  Sum_probs=31.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhh
Q 036416          207 EPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEK  245 (256)
Q Consensus       207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~  245 (256)
                      ..+.+|.|+|+ |.+|..++..+...+.  ++..+|..+++
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            45678999995 9999998888888774  79999988776

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.38  E-value=0.63  Score=37.27  Aligned_cols=30  Identities=33%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416          212 VLIQAAAGGVGSLLCQWANALGATVIGTVST  242 (256)
Q Consensus       212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~  242 (256)
                      |+|+| +|..|+.++.-|...|++|++++..
T Consensus        26 VvVIG-~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          26 VVIIG-SGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             EEEEC-SSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            89999 5999999988888899999999865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=1.2  Score=35.55  Aligned_cols=43  Identities=23%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChh
Q 036416          199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKE  244 (256)
Q Consensus       199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~  244 (256)
                      ++.....+.+|++||-.| +| .|.+++.+|+ .|+ +|++++.++.
T Consensus        26 ai~~~~~~~~~~~VLDiG-cG-~G~lsl~aa~-~Ga~~V~aid~s~~   69 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVG-CG-TGILSMFAAK-AGAKKVLGVDQSEI   69 (311)
T ss_dssp             HHHHCGGGTTTCEEEEET-CT-TSHHHHHHHH-TTCSEEEEEESSTH
T ss_pred             HHHhccccCCcCEEEEEC-CC-CCHHHHHHHH-cCCCEEEEEeCHHH
Confidence            454545667899999998 45 7777777776 577 7999998864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=80.67  E-value=1.3  Score=33.40  Aligned_cols=44  Identities=11%  Similarity=0.114  Sum_probs=36.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHH---cCCeEEEEeCChhhHHHHHh
Q 036416          206 VEPGHTVLIQAAAGGVGSLLCQWANA---LGATVIGTVSTKEKAAQAKD  251 (256)
Q Consensus       206 ~~~g~~VlI~ga~g~vG~~ai~la~~---~ga~Vi~~~~~~~~~~~~~~  251 (256)
                      ++++.+||=.|  .|.|..+..+++.   .+++|+++|.+++-++.+++
T Consensus        37 ~~~~~~vLDlG--CGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~   83 (225)
T d1im8a_          37 VTADSNVYDLG--CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ   83 (225)
T ss_dssp             CCTTCEEEEES--CTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHH
T ss_pred             cCCCCEEEEec--cchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHH
Confidence            68999999998  5678888888875   47899999999987777754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.56  E-value=1.4  Score=29.73  Aligned_cols=35  Identities=17%  Similarity=0.076  Sum_probs=27.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc---CCeEEEEeCCh
Q 036416          208 PGHTVLIQAAAGGVGSLLCQWANAL---GATVIGTVSTK  243 (256)
Q Consensus       208 ~g~~VlI~ga~g~vG~~ai~la~~~---ga~Vi~~~~~~  243 (256)
                      ..++++|.|| |.+|+-++++...+   |.+|..+.+.+
T Consensus        17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             cCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            4589999995 99998877765543   77899988754