Citrus Sinensis ID: 036431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIRAATYSSESNDSF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHEEHEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
sskpkerdneylkqglpaveglsnefTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRnlqkkngttsassppplsppirslVKFINLPKQFMSDIraatyssesndsf
Flexible Loop (DISEMBL)
sskpkerdneylkqglpaveglsNEFTNVKKAARIEHDTfintcsslgsrvVEIRQLVTRcasserggfLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNlqkkngttsassppplsppIRSLVKFINLPKQFMSDIRaatyssesndsf
Low Complexity Region (SEG)
SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNLQKKNGTTsassppplsppirsLVKFINLPKQFMSDIRAATYSSESNDSF
Disordered region (IsUnstruct)
*********************LSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADIS************************LVKFINLPKQF*****************
Disordered Region (DISOPRED)
**********YLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLV**********FLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCAD******************************************************
Disordered Region (DISEMBL)
***********LKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNLQK************LSPPIRSLVKFINLPKQFMSDIRAA**********
Disordered Region (DISPRO)
*****ERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNL************************FINLP**FMSDI*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKLEHPLQLFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIRAATYSSESNDSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
O04532	760	Formin-like protein 8 OS=	yes	no	0.914	0.196	0.402	4e-29
O48682	763	Formin-like protein 4 OS=	no	no	0.828	0.176	0.391	4e-26
A3AB67	906	Formin-like protein 16 OS	yes	no	0.871	0.156	0.336	2e-23
Q9XIE0	929	Formin-like protein 7 OS=	no	no	0.871	0.152	0.377	3e-21
Q10Q99	892	Formin-like protein 8 OS=	no	no	0.638	0.116	0.286	9e-11
O22824	894	Formin-like protein 2 OS=	no	no	0.644	0.117	0.283	2e-10
Q8H8K7	849	Formin-like protein 4 OS=	no	no	0.601	0.115	0.307	3e-10
Q6ZKB2	882	Formin-like protein 9 OS=	no	no	0.650	0.120	0.338	4e-10
A2YVG8	884	Formin-like protein 9 OS=	N/A	no	0.650	0.119	0.338	5e-10
Q6MWG9	906	Formin-like protein 18 OS	no	no	0.957	0.172	0.254	5e-10

>sp|O04532|FH8_ARATH Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 35/184 (19%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           +E++ EYLK GLP V GLS+EF+NVKKAA ++++T + TCS+L  R  + + ++  C   
Sbjct: 581 EEQEKEYLKLGLPVVGGLSSEFSNVKKAACVDYETVVATCSALAVRAKDAKTVIGECEDG 640

Query: 65  ERGGFLKEMKAFLEDCEEELKL---------------------------EHPLQLFVIVK 97
           E G F+K M  FL+  EEE+K+                           ++PL LFVIV+
Sbjct: 641 EGGRFVKTMMTFLDSVEEEVKIAKGEERKVMELVKRTTDYYQAGAVTKGKNPLHLFVIVR 700

Query: 98  EFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPI-RSLVKFINLPKQFMSDIRAATYS 156
           +FL+MVD+VC DI RN+Q++   +      P+SP   R+ VKF  LP  FMSD RA + S
Sbjct: 701 DFLAMVDKVCLDIMRNMQRRKVGS------PISPSSQRNAVKFPVLPPNFMSD-RAWSDS 753

Query: 157 SESN 160
             S+
Sbjct: 754 GGSD 757

Might be involved in the organization and polarity of the actin cytoskeleton. Interacts with the barbed end of actin filaments and nucleates actin-filament polymerization in vitro.
Arabidopsis thaliana (taxid: 3702)

>sp|O48682|FH4_ARATH Formin-like protein 4 OS=Arabidopsis thaliana GN=FH4 PE=1 SV=2

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 36/171 (21%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           +E++ EYL+ GLP V GLS+EFTNVKKAA +++DT   TC +L SR  + R+++ +    
Sbjct: 586 EEQEKEYLRLGLPVVGGLSSEFTNVKKAAAVDYDTVAATCLALTSRAKDARRVLAQSEGD 645

Query: 65  ERGG--FLKEMKAFLEDCEEELKL--------------------------EHPLQLFVIV 96
            + G  F+K+M  FL+  EEE+KL                          ++PL LFVIV
Sbjct: 646 NKEGVRFVKKMNEFLDSVEEEVKLAKEEEKKVLELVKRTTEYYQAGAVKGKNPLHLFVIV 705

Query: 97  KEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFM 147
           ++FL+MVD+VC +I+RNLQ+++   S           R+ VKF  LP  FM
Sbjct: 706 RDFLAMVDKVCVEIARNLQRRSSMGSTQQ--------RNAVKFPVLPPNFM 748

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica GN=FH16 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 93/199 (46%), Gaps = 57/199 (28%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           +ER NEYL  GLP V GLS EF NVKKAA +++DT +N C+ LG+R+   ++L+      
Sbjct: 700 EERQNEYLNLGLPIVGGLSTEFANVKKAALVDYDTVVNECAILGNRLAGTKKLLETYGDD 759

Query: 65  ERGGFLKEMKAFLEDCEEEL----------------------------KLEHPLQLFVIV 96
              GF + ++ F++  E+EL                            K  HPLQLF+IV
Sbjct: 760 ---GFARGLRGFVKAAEQELNELKGNQEKVLELVQRTTEYYHTGATKDKNAHPLQLFIIV 816

Query: 97  KEFLSMVDRVCADISRNLQKK-------------------NGTTSASSPPPLSPP----- 132
           ++FL MVD+ C DI R LQ++                    G    +  P   PP     
Sbjct: 817 RDFLGMVDQACVDIKRKLQQQKKPTPPPSSSQPAAPAATTKGAADDAPAPAQKPPEEVDS 876

Query: 133 --IRSLVKFINLPKQFMSD 149
              R + +F NLP  FM D
Sbjct: 877 KRKRVMPRFPNLPAHFMKD 895

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XIE0|FH7_ARATH Formin-like protein 7 OS=Arabidopsis thaliana GN=FH7 PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 38/180 (21%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           +E++ E++K GLP + GLS+EFTNVKKAA I++D+F+ T  +LG+RV E ++L+ +    
Sbjct: 735 EEQEIEFIKMGLPIIGGLSSEFTNVKKAAGIDYDSFVATTLALGTRVKETKRLLDQSKGK 794

Query: 65  ERGGFLKEMKAFLEDCEEELKL--------------------------EHPLQLFVIVKE 98
           E G  L ++++F E  EEELK+                           +  QLFVI+++
Sbjct: 795 EDG-CLTKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGALKERNLFQLFVIIRD 853

Query: 99  FLSMVDRVCADISRNLQKKN----GTT--SASSPPPLSP-----PIRSLVKFINLPKQFM 147
           FL MVD  C++I+RN +K+      TT   ASS P  +P     P R+ V+F  LP  FM
Sbjct: 854 FLGMVDNACSEIARNQRKQQQQRPATTVAGASSSPAETPSVAAAPQRNAVRFPILPPNFM 913

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 32/136 (23%)

Query: 13  KQGLPAVEGLSNEFTNVKKAARIEHDT---FINTCSSLGSRVVEIRQLVTRCASSERGGF 69
           K GL  V GLS+E  NVKKAA ++ D    ++N   +   ++  + QL  +C   +R  F
Sbjct: 721 KHGLKVVSGLSSELGNVKKAATMDFDVLHGYVNKLETGLEKIKSVLQLEKKCTQGQR--F 778

Query: 70  LKEMKAFLEDCEEELKL---------------------------EHPLQLFVIVKEFLSM 102
              M+ FL++ E E++                             HPL++F++V++FLS 
Sbjct: 779 FMSMQDFLKEAEREIERVRGEERRALGRVKDITEYFHGDTAKEEAHPLRIFMVVRDFLST 838

Query: 103 VDRVCADISRNLQKKN 118
           +D+VC ++ R  Q + 
Sbjct: 839 LDQVCREVGRMQQDRT 854

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 29/134 (21%)

Query: 6   ERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRC---A 62
           + D E  K GL  V GLS++  NVKKAA ++ ++ IN  + +   + ++++++T      
Sbjct: 716 QDDLELKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVITELKQET 775

Query: 63  SSERGGFLKEMKAFLEDCEEEL-KLE-----------------------HPLQLFVIVKE 98
             ER  FL+ M +FL   E+E+ +L+                       HP ++F +V++
Sbjct: 776 GVER--FLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNSETHPFRIFAVVRD 833

Query: 99  FLSMVDRVCADISR 112
           FL+++D+VC ++ R
Sbjct: 834 FLTILDQVCKEVGR 847

Might be involved in the organization and polarity of the actin cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 32/130 (24%)

Query: 13  KQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIR---QLVTRCASSERGGF 69
           +QGL  V GLS E  NVK+AA ++ D      S L + + +I+   QL  +C  S+   F
Sbjct: 679 RQGLKVVSGLSTELGNVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLEKQC--SQGVNF 736

Query: 70  LKEMKAFLEDCEEELKL---------------------------EHPLQLFVIVKEFLSM 102
              M+ FL++ E+E++                             HPL++F++V++FLSM
Sbjct: 737 FATMREFLKEAEQEIEQVRHDEKAALGRVKEITEYFHGNAVKEEAHPLRIFMVVRDFLSM 796

Query: 103 VDRVCADISR 112
           +D VC ++S+
Sbjct: 797 LDHVCREVSQ 806

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZKB2|FH9_ORYSJ Formin-like protein 9 OS=Oryza sativa subsp. japonica GN=FH9 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 30/136 (22%)

Query: 4   PKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS 63
           P ER+ EY   G   V  LSNE  NVKK A I+ DT  N+ S+L   + ++R LV +  +
Sbjct: 732 PTERE-EYSSMGTEFVSELSNELGNVKKVASIDLDTLRNSISNLSCGLAQLRNLVEKDLA 790

Query: 64  SE--RGGFLKEMKAFLEDCE---EELKLEHP------------------------LQLFV 94
           S+     FL+ MK+FL   E   + LK +                          LQ+F+
Sbjct: 791 SDDKNNNFLQCMKSFLNHAENTMQGLKADEAQVLLNVRELTEYYHGEVSKDESNLLQIFI 850

Query: 95  IVKEFLSMVDRVCADI 110
           IVK+FL ++D+VC ++
Sbjct: 851 IVKDFLGLLDKVCREM 866

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YVG8|FH9_ORYSI Formin-like protein 9 OS=Oryza sativa subsp. indica GN=FH9 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 30/136 (22%)

Query: 4   PKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS 63
           P ER+ EY   G   V  LSNE  NVKK A I+ DT  N+ S+L   + ++R LV +  +
Sbjct: 734 PTERE-EYSSMGTEFVSELSNELGNVKKVASIDLDTLRNSISNLSCGLAQLRNLVEKDLA 792

Query: 64  SE--RGGFLKEMKAFLEDCE---EELKLEHP------------------------LQLFV 94
           S+     FL+ MK+FL   E   + LK +                          LQ+F+
Sbjct: 793 SDDKNNNFLQCMKSFLNHAENTMQGLKADEAQVLLNVRELTEYYHGEVSKDESNLLQIFI 852

Query: 95  IVKEFLSMVDRVCADI 110
           IVK+FL ++D+VC ++
Sbjct: 853 IVKDFLGLLDKVCREM 868

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6MWG9|FH18_ORYSJ Formin-like protein 18 OS=Oryza sativa subsp. japonica GN=FH18 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 29/185 (15%)

Query: 1   SSKPKERDN--EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLV 58
           SS  +E+D    Y + GL  V  L ++  NV+KAA  + D    T +SLG R+V+  + +
Sbjct: 709 SSLEQEQDETERYRQLGLGVVSSLGDDLQNVRKAASFDADALTITVASLGHRLVKANEFL 768

Query: 59  TRCASS--ERGGFLKEMKAFLEDCEEELKL-------------------------EHPLQ 91
           +    S  E  GF + + +F++  +E++                           +  L+
Sbjct: 769 STGMRSLEEDSGFQRRLASFVQQSQEQVTRLLEDEKRLRSLVRATVDYFHGSTGKDEGLR 828

Query: 92  LFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIR 151
           LFV+V++FL ++D+VC ++               P P     +S       P+Q + D R
Sbjct: 829 LFVVVRDFLGILDKVCREVKEQAAANAKAKKQQQPTPAPRSRQSSQSSFRDPRQQIQDRR 888

Query: 152 AATYS 156
           AA  S
Sbjct: 889 AAALS 893

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
359491274	734	PREDICTED: formin-like protein 8-like [V	0.932	0.207	0.513	4e-41
297733852	1369	unnamed protein product [Vitis vinifera]	0.920	0.109	0.489	2e-38
224102661	760	predicted protein [Populus trichocarpa]	0.993	0.213	0.427	1e-33
224135717	580	predicted protein [Populus trichocarpa]	0.975	0.274	0.481	1e-33
224091461	327	predicted protein [Populus trichocarpa]	0.987	0.492	0.432	2e-31
224102493	783	predicted protein [Populus trichocarpa]	0.987	0.205	0.432	3e-31
255558350	849	actin binding protein, putative [Ricinus	0.901	0.173	0.417	2e-30
296086486	724	unnamed protein product [Vitis vinifera]	0.871	0.196	0.444	3e-30
296082879	751	unnamed protein product [Vitis vinifera]	0.907	0.197	0.432	3e-29
225452747	819	PREDICTED: formin-like protein 4 [Vitis	0.907	0.180	0.432	3e-29

>gi|359491274|ref|XP_002280505.2| PREDICTED: formin-like protein 8-like [Vitis vinifera]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 112/181 (61%), Gaps = 29/181 (16%)

Query: 11  YLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFL 70
           YL  GLP + GLS EF NVKKAA I+HDTFIN CS+L +RV EI+ LV  C++ E+G F+
Sbjct: 555 YLMLGLPVLGGLSTEFYNVKKAAVIDHDTFINMCSTLTARVAEIQLLVASCSNGEKGRFV 614

Query: 71  KEMKAFLEDCEEELKL----------------------------EHPLQLFVIVKEFLSM 102
           +EMK FLE+CEEELK+                              PLQLF+IVK+FL M
Sbjct: 615 QEMKGFLEECEEELKVVRVEQTRVMELVKRTTEYYQAGASKDKGGQPLQLFLIVKDFLDM 674

Query: 103 VDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIRAATYSSESNDS 162
           VD+ C DI R LQKKN T +  S PPLS P R  V+F NL  QFMSD+   T SS+S D 
Sbjct: 675 VDQACQDIYRRLQKKNVTKTVGSSPPLS-PTRQAVRFTNLQLQFMSDMCRTTSSSDSEDD 733

Query: 163 F 163
           F
Sbjct: 734 F 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733852|emb|CBI15099.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 110/182 (60%), Gaps = 32/182 (17%)

Query: 11  YLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFL 70
           YL  GLP + GLS EF NVKKAA I+HDTFIN CS+L +RV EI+ LV  C++ E+G F+
Sbjct: 703 YLMLGLPVLGGLSTEFYNVKKAAVIDHDTFINMCSTLTARVAEIQLLVASCSNGEKGRFV 762

Query: 71  KEMKAFLEDCEEELKL----------------------------EHPLQLFVIVKEFLSM 102
           +EMK FLE+CEEELK+                              PLQLF+IVK+FL M
Sbjct: 763 QEMKGFLEECEEELKVVRVEQTRVMELVKRTTEYYQAGASKDKGGQPLQLFLIVKDFLDM 822

Query: 103 VDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDI---RAATYSSES 159
           VD+ C DI R LQKKN T +  S PPLS P R  V+F NL  QFMSD+   R + Y+   
Sbjct: 823 VDQACQDIYRRLQKKNVTKTVGSSPPLS-PTRQAVRFTNLQLQFMSDMSTPRPSNYTHRG 881

Query: 160 ND 161
            +
Sbjct: 882 RE 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102661|ref|XP_002312768.1| predicted protein [Populus trichocarpa] gi|222852588|gb|EEE90135.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 115/192 (59%), Gaps = 30/192 (15%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+   ER+ EY+  GLPAV GLS EF+NVKKAA+I++DTF  TCS+L +   E+R  +++
Sbjct: 570 SASKGEREKEYMMLGLPAVGGLSIEFSNVKKAAQIDYDTFAATCSALATGAREVRAFMSQ 629

Query: 61  CASSE-RGGFLKEMKAFLEDCEEELKL----------------------------EHPLQ 91
           CA++   GGF++EMK FLE  EEELK                              H LQ
Sbjct: 630 CAAANGEGGFVREMKGFLEAAEEELKGLTKEQTRVMDLVKKTTEYYHAGASKDQEAHALQ 689

Query: 92  LFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIR 151
           LF I+K+FL MVD+VC +I+RNLQ++  ++ +    P SP  R  V+F NLP+ FM + +
Sbjct: 690 LFSIIKDFLCMVDQVCIEITRNLQRRKTSSRSVESSPKSPASRIPVRFPNLPQHFMKE-K 748

Query: 152 AATYSSESNDSF 163
           +   SSES+  F
Sbjct: 749 SMNCSSESDSDF 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135717|ref|XP_002322143.1| predicted protein [Populus trichocarpa] gi|222869139|gb|EEF06270.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 112/187 (59%), Gaps = 28/187 (14%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           +ER+ EYL  GLPA+  +  EF+NVK+AA IE D+F+NTCSSL +RV E +QLV    +S
Sbjct: 394 EERNKEYLLLGLPALRDMIAEFSNVKRAAAIEFDSFVNTCSSLTARVTETQQLVVNFGNS 453

Query: 65  ERGGFLKEMKAFLEDCEEELKL----------------------------EHPLQLFVIV 96
           E GGFL +MK FLEDCEEELK+                             + LQLFVIV
Sbjct: 454 EAGGFLMQMKGFLEDCEEELKVVRDEQKRIMEVVKRTTEYYQAGASKQKEANLLQLFVIV 513

Query: 97  KEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIRAATYS 156
           K+FL MVDRV  DIS+ +QKKN    A S  P SPP  + V+F +     MSD+  AT  
Sbjct: 514 KDFLDMVDRVSVDISQKVQKKNVAARAGSSSPPSPPSSNPVRFPDFRLHPMSDMSRATSW 573

Query: 157 SESNDSF 163
           SES+D F
Sbjct: 574 SESDDGF 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091461|ref|XP_002334953.1| predicted protein [Populus trichocarpa] gi|222832466|gb|EEE70943.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 31/192 (16%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+  ++R+ EY+  GLPAV GLS EF+NVKKAA I++D F +TCS L +R  E+R  V++
Sbjct: 122 STSKEKREKEYMMLGLPAVGGLSAEFSNVKKAALIDYDAFASTCSVLAARAREVRAFVSQ 181

Query: 61  CASSE-RGGFLKEMKAFLEDCEEELK---------LE-------------------HPLQ 91
           CA++   GGF+KEMK FLE  EEELK         +E                   H LQ
Sbjct: 182 CAAANGEGGFVKEMKGFLEAAEEELKSLTKEQTRVMELVKKTTEYYHAGASKDQEAHALQ 241

Query: 92  LFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIR 151
           LF I+K+FL MVD+ C  I+RNL++K  ++S    P  SP  R  V+F NLP++FM + +
Sbjct: 242 LFAILKDFLYMVDQACVVIARNLRRKTPSSSIEHSPK-SPASRVPVRFPNLPERFMLE-K 299

Query: 152 AATYSSESNDSF 163
             + S ES+  F
Sbjct: 300 CMSSSRESDSDF 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102493|ref|XP_002312698.1| predicted protein [Populus trichocarpa] gi|222852518|gb|EEE90065.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 31/192 (16%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+  ++R+ EY+  GLPAV GLS EF+NVKKAA I++D F +TCS L +R  E+R  V++
Sbjct: 578 STSKEKREKEYMMLGLPAVGGLSAEFSNVKKAALIDYDAFASTCSVLAARAREVRAFVSQ 637

Query: 61  CASSE-RGGFLKEMKAFLEDCEEELK---------LE-------------------HPLQ 91
           CA++   GGF+KEMK FLE  EEELK         +E                   H LQ
Sbjct: 638 CAAANGEGGFVKEMKGFLEAAEEELKSLTKEQTRVMELVKKTTEYYHAGASKDQEAHALQ 697

Query: 92  LFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFMSDIR 151
           LF I+K+FL MVD+ C  I+RNL++K  ++S    P  SP  R  V+F NLP++FM + +
Sbjct: 698 LFAIIKDFLYMVDQACVVIARNLRRKTPSSSIEHSPK-SPASRVPVRFPNLPERFMLE-K 755

Query: 152 AATYSSESNDSF 163
             + S ES+  F
Sbjct: 756 CMSSSRESDSDF 767

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558350|ref|XP_002520202.1| actin binding protein, putative [Ricinus communis] gi|223540694|gb|EEF42257.1| actin binding protein, putative [Ricinus communis]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 102/175 (58%), Gaps = 28/175 (16%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+   ER+ EY+  GLP V GLS EF+NVKKAA+I++++F  T S+L +RV E+R + ++
Sbjct: 660 SASKDEREKEYIMLGLPMVGGLSAEFSNVKKAAQIDYNSFAGTYSALTARVAEVRLIASQ 719

Query: 61  CASSERGGFLKEMKAFLEDCEEELKLEH----------------------------PLQL 92
           CA++  G F  EMK+F+E  E ELK+                              PLQL
Sbjct: 720 CAANGEGNFANEMKSFVEAAEYELKVLREEENRIMELVRKTTEYYQAGASKKKGAPPLQL 779

Query: 93  FVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFM 147
           F I+K+FL MVDRVC +I+RN+Q++   +      P SP  R  VKF NLP+ FM
Sbjct: 780 FAIIKDFLGMVDRVCIEITRNMQRRKTPSPNFGSSPKSPASRVPVKFPNLPEHFM 834

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086486|emb|CBI32075.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 102/171 (59%), Gaps = 29/171 (16%)

Query: 5   KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
           ++R+ EY+  GLP V GLS EF+NVKKAA I+++ F   CS+L +   EI+Q V + A+S
Sbjct: 539 EDREKEYIMIGLPVVGGLSAEFSNVKKAAVIDYNAFAGVCSTLTAHSTEIKQFVAQFANS 598

Query: 65  ERGGFLKEMKAFLEDCEEEL----------------------------KLEHPLQLFVIV 96
           + GGFL++MK+FL+  +EEL                            K   P+QLFVIV
Sbjct: 599 D-GGFLRKMKSFLKASDEELREVREEQTRVMELVRRTTEYYQPRSSKNKEASPVQLFVIV 657

Query: 97  KEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSLVKFINLPKQFM 147
           K FL MVD+VC DI+RNLQ++  TT++      SPP R  VKF NLP  FM
Sbjct: 658 KNFLGMVDQVCVDIARNLQRRKTTTASLGSSTKSPPSRIPVKFPNLPPNFM 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082879|emb|CBI22180.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 103/178 (57%), Gaps = 30/178 (16%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+  ++R+ EY+  GLP V  LS EF+NVKK A ++++ F   CS+L +   EI+Q V  
Sbjct: 561 SASREDREKEYIMIGLPVVGSLSAEFSNVKKVAEMDYNAFGGVCSTLTAHSTEIKQFVAP 620

Query: 61  CASSERGGFLKEMKAFLEDCEEEL----------------------------KLEHPLQL 92
            A+S+ GGFL++MK+FLE   EEL                            K   PLQL
Sbjct: 621 FANSD-GGFLRKMKSFLEAAGEELREVREEQTRVMELLRRTTEYYQPRSSKNKEASPLQL 679

Query: 93  FVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPL-SPPIRSLVKFINLPKQFMSD 149
           F+IVK+FL MVD+VC DI+RNLQ++  TT++  P    SPP R  VKF NLP  FM D
Sbjct: 680 FIIVKDFLGMVDQVCVDIARNLQRRKTTTASLGPSSTKSPPSRIPVKFPNLPPNFMPD 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452747|ref|XP_002277455.1| PREDICTED: formin-like protein 4 [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 103/178 (57%), Gaps = 30/178 (16%)

Query: 1   SSKPKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR 60
           S+  ++R+ EY+  GLP V  LS EF+NVKK A ++++ F   CS+L +   EI+Q V  
Sbjct: 629 SASREDREKEYIMIGLPVVGSLSAEFSNVKKVAEMDYNAFGGVCSTLTAHSTEIKQFVAP 688

Query: 61  CASSERGGFLKEMKAFLEDCEEEL----------------------------KLEHPLQL 92
            A+S+ GGFL++MK+FLE   EEL                            K   PLQL
Sbjct: 689 FANSD-GGFLRKMKSFLEAAGEELREVREEQTRVMELLRRTTEYYQPRSSKNKEASPLQL 747

Query: 93  FVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPL-SPPIRSLVKFINLPKQFMSD 149
           F+IVK+FL MVD+VC DI+RNLQ++  TT++  P    SPP R  VKF NLP  FM D
Sbjct: 748 FIIVKDFLGMVDQVCVDIARNLQRRKTTTASLGPSSTKSPPSRIPVKFPNLPPNFMPD 805

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2020568	760	FH8 "formin 8" [Arabidopsis th	0.503	0.107	0.463	6.3e-26
TAIR|locus:2025981	929	AT1G59910 [Arabidopsis thalian	0.570	0.100	0.437	6e-23
TAIR|locus:2158576	899	FH6 "formin homolog 6" [Arabid	0.447	0.081	0.333	7e-11
TAIR|locus:2172129	900	Fh5 "formin homology5" [Arabid	0.570	0.103	0.298	2.5e-09
TAIR|locus:2094493	1051	AFH1 "formin homology 1" [Arab	0.429	0.066	0.320	4e-07
TAIR|locus:2043989	894	AT2G43800 [Arabidopsis thalian	0.552	0.100	0.336	1.2e-06
TAIR|locus:2079807	884	AT3G05470 [Arabidopsis thalian	0.503	0.092	0.297	0.00022

TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
 Identities = 38/82 (46%), Positives = 57/82 (69%)

Query:     5 KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
             +E++ EYLK GLP V GLS+EF+NVKKAA ++++T + TCS+L  R  + + ++  C   
Sbjct:   581 EEQEKEYLKLGLPVVGGLSSEFSNVKKAACVDYETVVATCSALAVRAKDAKTVIGECEDG 640

Query:    65 ERGGFLKEMKAFLEDCEEELKL 86
             E G F+K M  FL+  EEE+K+
Sbjct:   641 EGGRFVKTMMTFLDSVEEEVKI 662

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005522 "profilin binding" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

GO:0045010 "actin nucleation" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
 Identities = 42/96 (43%), Positives = 68/96 (70%)

Query:     5 KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS 64
             +E++ E++K GLP + GLS+EFTNVKKAA I++D+F+ T  +LG+RV E ++L+ +    
Sbjct:   735 EEQEIEFIKMGLPIIGGLSSEFTNVKKAAGIDYDSFVATTLALGTRVKETKRLLDQSKGK 794

Query:    65 ERGGFLKEMKAFLEDCEEELKL--EHPLQLFVIVKE 98
             E  G L ++++F E  EEELK+  E  L++  +VK+
Sbjct:   795 E-DGCLTKLRSFFESAEEELKVITEEQLRIMELVKK 829

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query:    11 YLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFL 70
             + KQGL  V GLS +  NVKK+A ++ D   +  + L   + ++R  +     + +G F 
Sbjct:   724 FRKQGLQVVAGLSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLRSFLK--TETTQGRFF 781

Query:    71 KEMKAFLEDCEEELK 85
               MK FL++ EEE++
Sbjct:   782 DSMKTFLKEAEEEIR 796

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 29/97 (29%), Positives = 49/97 (50%)

Query:     5 KERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTR--CA 62
             +E +  Y   GL  V GLS+E  +VKK+A I+ D    T   +G  + + R  V     +
Sbjct:   714 EESEENYRNLGLEKVSGLSSELEHVKKSANIDADGLTGTVLKMGHALSKARDFVNSEMKS 773

Query:    63 SSERGGFLKEMKAFLEDCEEELK--LEHPLQLFVIVK 97
             S E  GF + ++ F+++ E  +   LE   ++  +VK
Sbjct:   774 SGEESGFREALEDFIQNAEGSIMSILEEEKRIMALVK 810

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009960 "endosperm development" evidence=IMP

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0045010 "actin nucleation" evidence=IDA

GO:0048317 "seed morphogenesis" evidence=IGI

TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query:    13 KQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRV------VEIRQLVTRCASSER 66
             K GL  V  L +E +NVKKAA ++ +   +  S L   +      ++++  +T  ++S+R
Sbjct:   863 KLGLQVVSSLCSELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQR 922

Query:    67 GGFLKEMKAFLEDCEEEL 84
               F + MK FL+  EEE+
Sbjct:   923 --FSESMKTFLKRAEEEI 938

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=IDA

GO:0051016 "barbed-end actin filament capping" evidence=IDA

TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 32/95 (33%), Positives = 55/95 (57%)

Query:     8 DNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERG 67
             D E  K GL  V GLS++  NVKKAA ++ ++ IN  + +   + ++++++T     E G
Sbjct:   718 DLELKKLGLQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVITEL-KQETG 776

Query:    68 --GFLKEMKAFLEDCEEEL-KLE-HPLQLFVIVKE 98
                FL+ M +FL   E+E+ +L+ H   +  +VKE
Sbjct:   777 VERFLESMNSFLNKGEKEITELQSHGDNVMKMVKE 811

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query:     4 PKERDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRC-- 61
             P+E++ +Y + GL  V GL+ E  NVKK A I+ +  + + S+L   + ++  L +    
Sbjct:   733 PEEKEEDYRRMGLDLVSGLNTELRNVKKTATIDLEGLVTSVSNLRDGLGQLSCLASEKLK 792

Query:    62 ASSERGGFLKEMKAFLEDCEEELK 85
                E   F+  M +FL   E+ L+
Sbjct:   793 GDEENRAFVSSMSSFLRYGEKSLE 816


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       149   0.00078  104 3  11 22  0.48    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  123 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.69u 0.24s 14.93t   Elapsed:  00:00:01
  Total cpu time:  14.69u 0.24s 14.93t   Elapsed:  00:00:01
  Start:  Sat May 11 16:01:07 2013   End:  Sat May 11 16:01:08 2013

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016043 "cellular component organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	5e-11

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 27/122 (22%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSE--RG 67
           + +++ LP +   S+E ++V+KAA+++ +        L   + ++ + +   A  E    
Sbjct: 251 KIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEKGLKKLERELELSALDEHPDD 310

Query: 68  GFLKEMKAFLEDCEEELKL-------------------------EHPLQLFVIVKEFLSM 102
            F+++MK FLE+ EE+L                             P + F I+++FL M
Sbjct: 311 KFVEKMKEFLEEAEEKLDKLESLLKEAMELFKELTEYFGEDPKETSPEEFFKILRDFLRM 370

Query: 103 VD 104
             
Sbjct: 371 FK 372

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	99.8
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	99.12
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	98.24
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	97.03
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	92.83
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	87.56

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=99.80  E-value=1.3e-19  Score=171.52  Aligned_cols=148  Identities=21%  Similarity=0.318  Sum_probs=120.9

Q ss_pred             hhHHHHhcChhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHH-hcccc---ccCchHHHHHHHHHHHHH
Q 036431            7 RDNEYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVT-RCASS---ERGGFLKEMKAFLEDCEE   82 (163)
Q Consensus         7 ~e~ey~~lGL~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~-~~~~~---e~~~F~~~M~~Fl~~AEe   82 (163)
                      .++.|+++|+++|.+++.||.||++||.||+++|...|++|..|+.+++..+. ...++   ..++|...|+.|+..||.
T Consensus       653 ~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~  732 (833)
T KOG1922|consen  653 DVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEK  732 (833)
T ss_pred             hhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHH
Confidence            56799999999999999999999999999999999999999999999999885 54333   358999999999999999


Q ss_pred             hhcc--------------------------cCCceeehhHHHHHHhHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccc
Q 036431           83 ELKL--------------------------EHPLQLFVIVKEFLSMVDRVCADISRNLQKKNGTTSASSPPPLSPPIRSL  136 (163)
Q Consensus        83 Ei~~--------------------------~~plriFvIVRDFL~mLD~vCkEv~~~~q~~~~~~s~~ss~p~~p~~r~~  136 (163)
                      |+..                          .+++++|+||||||.|+|+||+|+++..++..+. +     ...+..+.+
T Consensus       733 ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~-~-----~~~~~~~~~  806 (833)
T KOG1922|consen  733 EVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKEKTY-E-----AEEKRANKE  806 (833)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c-----ccccccccc
Confidence            9865                          6889999999999999999999998754433322 1     222334566


Q ss_pred             ccccCcchhhhhhhhccCCCCCCC
Q 036431          137 VKFINLPKQFMSDIRAATYSSESN  160 (163)
Q Consensus       137 ~~Fp~~~~~~m~~~s~~~sss~sd  160 (163)
                      ..++.++..++....+.++++.++
T Consensus       807 ~~~~~~~~~~~~~~~~~~~~~~~~  830 (833)
T KOG1922|consen  807 AELEELKNISQAVSKRTSDSESSL  830 (833)
T ss_pred             cccccccccccccccccccccccc
Confidence            778888888877766555555444

>smart00498 FH2 Formin Homology 2 Domain

Probab=99.12  E-value=1.4e-10  Score=103.76  Aligned_cols=102  Identities=25%  Similarity=0.370  Sum_probs=87.4

Q ss_pred             HHHhcChhhhhcCchhhhhh----hHhhhcchhHHHHHHHHHhhhHHHHHHHHHhcccc---cc--CchHHHHHHHHHHH
Q 036431           10 EYLKQGLPAVEGLSNEFTNV----KKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS---ER--GGFLKEMKAFLEDC   80 (163)
Q Consensus        10 ey~~lGL~vVsgLssEL~NV----KKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~~---e~--~~F~~~M~~Fl~~A   80 (163)
                      ++...||+.+.+++.++.+|    .++|..+++.|...+.++...+.++.++...+...   ++  +.|.+-|..|.+.+
T Consensus       295 e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~  374 (432)
T smart00498      295 ETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAA  374 (432)
T ss_pred             HHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45567888888999999999    99999999999999999999999999988765432   11  56778888888888


Q ss_pred             HHhhcc---------------------------cCCceeehhHHHHHHhHHHHHHHHH
Q 036431           81 EEELKL---------------------------EHPLQLFVIVKEFLSMVDRVCADIS  111 (163)
Q Consensus        81 EeEi~~---------------------------~~plriFvIVRDFL~mLD~vCkEv~  111 (163)
                      +++++.                           +||+++|++|+||++|+|++|++++
T Consensus       375 ~en~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~  432 (432)
T smart00498      375 EENIKKEEEEEERRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG  432 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence            877643                           7999999999999999999999973

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=98.24  E-value=2.9e-06  Score=73.47  Aligned_cols=76  Identities=22%  Similarity=0.415  Sum_probs=64.7

Q ss_pred             HHhcChhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc--cccCchHHHHHHHHHHHHHhhcc
Q 036431           11 YLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERGGFLKEMKAFLEDCEEELKL   86 (163)
Q Consensus        11 y~~lGL~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~--~e~~~F~~~M~~Fl~~AEeEi~~   86 (163)
                      +...+.+-+..+..||..|.+|+.+|.+.|...+..|..++.+++..+.....  +.++.|...|..|++.|+.++..
T Consensus       250 ~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~  327 (370)
T PF02181_consen  250 IVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDE  327 (370)
T ss_dssp             HHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            44446677888999999999999999999999999999999999999988754  34589999999999999988854

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>smart00498 FH2 Formin Homology 2 Domain

Probab=97.03  E-value=0.0038  Score=56.19  Aligned_cols=94  Identities=15%  Similarity=0.259  Sum_probs=76.1

Q ss_pred             hhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc--cccCchHHHHHHHHHHHHHhhcc---------
Q 036431           18 AVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERGGFLKEMKAFLEDCEEELKL---------   86 (163)
Q Consensus        18 vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~--~e~~~F~~~M~~Fl~~AEeEi~~---------   86 (163)
                      -+..+..||..|.+|+.++ +.|...+..|..++..+..-+.....  +.++.|...|..|++.|+.++..         
T Consensus       259 ~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~  337 (432)
T smart00498      259 DLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLK  337 (432)
T ss_pred             hhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566899999999999999 99999999999999988764443322  22378999999999999988754         


Q ss_pred             ----------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431           87 ----------------EHPLQLFVIVKEFLSMVDRVCADISR  112 (163)
Q Consensus        87 ----------------~~plriFvIVRDFL~mLD~vCkEv~~  112 (163)
                                      ..|=-.|-++.+|+..+.++++|-.+
T Consensus       338 ~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~  379 (432)
T smart00498      338 TRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIK  379 (432)
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            23455778999999999999988654

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=92.83  E-value=0.29  Score=49.06  Aligned_cols=69  Identities=16%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             hhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhcc--ccccCchHHHHHHHHHHHHHhhcc
Q 036431           18 AVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCA--SSERGGFLKEMKAFLEDCEEELKL   86 (163)
Q Consensus        18 vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~--~~e~~~F~~~M~~Fl~~AEeEi~~   86 (163)
                      =+.....||..|-||.-+.+|.+..++..+...+.++..-+..+.  ..+.+.|.+.|..|.+.|.++...
T Consensus       877 d~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~  947 (1102)
T KOG1924|consen  877 DILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSK  947 (1102)
T ss_pred             hhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999998887764  235689999999999999988754

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=87.56  E-value=4.8  Score=39.19  Aligned_cols=66  Identities=15%  Similarity=0.339  Sum_probs=47.7

Q ss_pred             hcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccccc-cCchHHHHHHHHHHHHHhhc
Q 036431           20 EGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSE-RGGFLKEMKAFLEDCEEELK   85 (163)
Q Consensus        20 sgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~~e-~~~F~~~M~~Fl~~AEeEi~   85 (163)
                      +.|=+|+.-|-+.|-+|++-|.-++-.|...-.---+-|.....-| .-.....|..||+++.+.|.
T Consensus       531 sDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~  597 (817)
T KOG1925|consen  531 SDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRIA  597 (817)
T ss_pred             hhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999999988888776544334333322111 13577889999999888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	9e-10
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	1e-09
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	2e-09
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 18/135 (13%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERG 67
           E  +   P V    +E  +V+KA+R+  +    +   +  ++ ++ + V    +   E+ 
Sbjct: 185 ELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD 244

Query: 68  GFLKEMKAFLEDCEEELKL-------------------------EHPLQLFVIVKEFLSM 102
            F+++M +F++D +E+                                + F+ +  F +M
Sbjct: 245 KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM 304

Query: 103 VDRVCADISRNLQKK 117
             +   +  +  + +
Sbjct: 305 FLQAVKENQKRRETE 319

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 18/135 (13%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERG 67
           E  +   P V    +E  +V+KA+R+  +    +   +  ++ ++ + V    +   E+ 
Sbjct: 256 ELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD 315

Query: 68  GFLKEMKAFLEDCEEELKL-------------------------EHPLQLFVIVKEFLSM 102
            F+++M +F++D +E+                                + F+ +  F +M
Sbjct: 316 KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM 375

Query: 103 VDRVCADISRNLQKK 117
             +   +  +  + +
Sbjct: 376 FLQAVKENQKRRETE 390

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 28/136 (20%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS---ER 66
             ++   P+V  L+ E  ++ +AA++         S+L S +  +   +    S      
Sbjct: 267 TIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPG 326

Query: 67  GGFLKEMKAFLEDCEEELKL-------------------------EHPLQLFVIVKEFLS 101
             F+  +  F+                                    P + F I  +FL 
Sbjct: 327 DKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQ 386

Query: 102 MVDRVCADISRNLQKK 117
            V     +     +KK
Sbjct: 387 AVSEAKQENENMRKKK 402

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 14/140 (10%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASS----- 64
           + ++   P+     +E   V    ++  +  +N C      +V + + V     S     
Sbjct: 266 KIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKF 325

Query: 65  -ERGGFLKEMKAFLEDCEEELKL--------------------------EHPLQLFVIVK 97
                 L +    L +  ++  L                             +  F    
Sbjct: 326 HPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFA 385

Query: 98  EFLSMVDRVCADISRNLQKK 117
           +F++   +  A      +++
Sbjct: 386 DFINEYKKAQAQNLAAEEEE 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 29/146 (19%)

Query: 28  NVKKAARIEHDTFINTCSSL-GSR---VVEIRQLVTRCASS---ERGGFLK-EMKAFLED 79
           NV+ A     + F  +C  L  +R   V +     T    S           E+K+ L  
Sbjct: 252 NVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 80  C----EEELKLE----HPLQLFVIVKEFLSMVDRVCADISRNLQ-KKNGTTSASSPPPLS 130
                 ++L  E    +P +L +I +     +     D  +++   K  T   SS   L 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLE 367

Query: 131 PPI-----RSLVKF---INLPKQFMS 148
           P         L  F    ++P   +S
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLS 393

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	99.15
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	99.04
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	98.98
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	98.88
4eah_A	402	Formin-like protein 3, actin, alpha skeletal muscl	98.34

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1

Probab=99.15  E-value=9.3e-11  Score=100.37  Aligned_cols=97  Identities=18%  Similarity=0.390  Sum_probs=84.6

Q ss_pred             hhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhcc--ccccCchHHHHHHHHHHHHHhhcc-------
Q 036431           16 LPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCA--SSERGGFLKEMKAFLEDCEEELKL-------   86 (163)
Q Consensus        16 L~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~--~~e~~~F~~~M~~Fl~~AEeEi~~-------   86 (163)
                      .+-+.++..||.+|.+||.++++.|...+..|..++..++.-+....  .++.++|...|..|++.|++++..       
T Consensus       191 ~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~  270 (340)
T 1v9d_A          191 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSN  270 (340)
T ss_dssp             CCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999998777653  234578999999999999987753       


Q ss_pred             ------------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431           87 ------------------EHPLQLFVIVKEFLSMVDRVCADISR  112 (163)
Q Consensus        87 ------------------~~plriFvIVRDFL~mLD~vCkEv~~  112 (163)
                                        ..|-.+|.|+++|+.+++++|+|..+
T Consensus       271 ~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~  314 (340)
T 1v9d_A          271 METLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK  314 (340)
T ss_dssp             HHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              35678999999999999999999864

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A

Probab=99.04  E-value=4e-10  Score=98.35  Aligned_cols=97  Identities=13%  Similarity=0.259  Sum_probs=84.1

Q ss_pred             hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc------cccCchHHHHHHHHHHHHHhhcc----
Q 036431           17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS------SERGGFLKEMKAFLEDCEEELKL----   86 (163)
Q Consensus        17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~------~e~~~F~~~M~~Fl~~AEeEi~~----   86 (163)
                      +-+.++..||.+|.+||.+|++.|...|..|..|+.+++.-+.....      ...+.|...|..|++.|+.++..    
T Consensus       273 p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~  352 (411)
T 1ux5_A          273 PSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDE  352 (411)
T ss_dssp             GGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66789999999999999999999999999999999999998875421      23478999999999999987753    


Q ss_pred             -------------------c---CCceeehhHHHHHHhHHHHHHHHHHH
Q 036431           87 -------------------E---HPLQLFVIVKEFLSMVDRVCADISRN  113 (163)
Q Consensus        87 -------------------~---~plriFvIVRDFL~mLD~vCkEv~~~  113 (163)
                                         .   +|-.+|.++++|+.+++++|+|+.+.
T Consensus       353 ~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~  401 (411)
T 1ux5_A          353 VKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAA  401 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               2   46789999999999999999998763

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=98.98  E-value=1.2e-09  Score=97.75  Aligned_cols=96  Identities=19%  Similarity=0.277  Sum_probs=83.3

Q ss_pred             hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc---cccCchHHHHHHHHHHHHHhhcc-------
Q 036431           17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS---SERGGFLKEMKAFLEDCEEELKL-------   86 (163)
Q Consensus        17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~---~e~~~F~~~M~~Fl~~AEeEi~~-------   86 (163)
                      +-+.++..||.+|.+||.++++.|...|..|..|+.+++.-+.....   ..++.|...|..|++.|+.++..       
T Consensus       274 p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~  353 (483)
T 2j1d_G          274 PSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAE  353 (483)
T ss_dssp             GGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999987776532   23478999999999999988753       


Q ss_pred             ------------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431           87 ------------------EHPLQLFVIVKEFLSMVDRVCADISR  112 (163)
Q Consensus        87 ------------------~~plriFvIVRDFL~mLD~vCkEv~~  112 (163)
                                        ..|-.+|.|+.+|+.+++++|+|+.+
T Consensus       354 ~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~  397 (483)
T 2j1d_G          354 AKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENEN  397 (483)
T ss_dssp             HHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              35678999999999999999999853

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D

Probab=98.88  E-value=3.9e-09  Score=94.44  Aligned_cols=95  Identities=18%  Similarity=0.394  Sum_probs=83.0

Q ss_pred             hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc--cccCchHHHHHHHHHHHHHhhcc--------
Q 036431           17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERGGFLKEMKAFLEDCEEELKL--------   86 (163)
Q Consensus        17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~--~e~~~F~~~M~~Fl~~AEeEi~~--------   86 (163)
                      +-+.++..||.+|.+||.|+++.|...|.+|..++..++.-++....  +..+.|+..|..|++.|++++..        
T Consensus       263 p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~  342 (457)
T 3obv_E          263 PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM  342 (457)
T ss_dssp             GGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999988876532  23478999999999999988753        


Q ss_pred             -----------------cCCceeehhHHHHHHhHHHHHHHHH
Q 036431           87 -----------------EHPLQLFVIVKEFLSMVDRVCADIS  111 (163)
Q Consensus        87 -----------------~~plriFvIVRDFL~mLD~vCkEv~  111 (163)
                                       ..|-.+|.|+.+|+.++.++|+|..
T Consensus       343 ~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~  384 (457)
T 3obv_E          343 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ  384 (457)
T ss_dssp             HHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             3456799999999999999999874

>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}

Probab=98.34  E-value=8.3e-07  Score=78.08  Aligned_cols=90  Identities=19%  Similarity=0.275  Sum_probs=75.7

Q ss_pred             hhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccccccCchHHHHHHHHHHHHHhhcc---------
Q 036431           16 LPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKL---------   86 (163)
Q Consensus        16 L~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~~e~~~F~~~M~~Fl~~AEeEi~~---------   86 (163)
                      .+-+.++..||.+|.+||.++++.|...|.+|..|+..++.-+..  .+     ...|..|++.|++++..         
T Consensus       268 ~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~--~d-----~~~l~~Fl~~a~~~~~~L~~~~~~~~  340 (402)
T 4eah_A          268 YPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSI--HD-----NSVLRNFLSTNEGKLDKLQRDAKTAE  340 (402)
T ss_dssp             CGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHT--TC-----CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--cc-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999998753332  11     23799999999988754         


Q ss_pred             ----------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431           87 ----------------EHPLQLFVIVKEFLSMVDRVCADISR  112 (163)
Q Consensus        87 ----------------~~plriFvIVRDFL~mLD~vCkEv~~  112 (163)
                                      ..|-.+|.++.+|+.++.++|+|..+
T Consensus       341 ~~~~~l~~yFgedpk~~~~~~fF~~~~~F~~~fk~A~~en~~  382 (402)
T 4eah_A          341 EAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENEA  382 (402)
T ss_dssp             HHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            34668999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	5e-09
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	2e-06

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (123), Expect = 5e-09
 Identities = 14/140 (10%), Positives = 39/140 (27%), Gaps = 32/140 (22%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSE---- 65
           + ++   P+     +E   V    ++  +  +N C      +V + + V     S+    
Sbjct: 266 KIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKF 325

Query: 66  --RGGFLKEMKAFLEDCEEELKL--------------------------EHPLQLFVIVK 97
                 L +    L +  ++  L                             +  F    
Sbjct: 326 HPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFA 385

Query: 98  EFLSMVDRVCADISRNLQKK 117
           +F++   +  A      +++
Sbjct: 386 DFINEYKKAQAQNLAAEEEE 405

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 27/135 (20%)

Query: 10  EYLKQGLPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSE--RG 67
           E  +   P V    +E  +V+KA+R+  +    +   +  ++ ++ + V    ++   + 
Sbjct: 180 ELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD 239

Query: 68  GFLKEMKAFLEDCEEELKL-------------------------EHPLQLFVIVKEFLSM 102
            F+++M +F++D +E+                                + F+ +  F +M
Sbjct: 240 KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM 299

Query: 103 VDRVCADISRNLQKK 117
             +   +  +  + +
Sbjct: 300 FLQAVKENQKRRETE 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	98.72
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.51

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2e-08  Score=83.09  Aligned_cols=96  Identities=18%  Similarity=0.399  Sum_probs=83.7

Q ss_pred             hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc--cccCchHHHHHHHHHHHHHhhcc--------
Q 036431           17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERGGFLKEMKAFLEDCEEELKL--------   86 (163)
Q Consensus        17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~--~e~~~F~~~M~~Fl~~AEeEi~~--------   86 (163)
                      +-+.++..||.+|.+||.++++.|...+..|..++.+++.-+.....  +.++.|...|..|++.|+.++..        
T Consensus       187 p~l~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~  266 (332)
T d1v9da_         187 PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM  266 (332)
T ss_dssp             CTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999988876532  33478999999999999988864        


Q ss_pred             -----------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431           87 -----------------EHPLQLFVIVKEFLSMVDRVCADISR  112 (163)
Q Consensus        87 -----------------~~plriFvIVRDFL~mLD~vCkEv~~  112 (163)
                                       ..|-.+|-++.+|+.+++++|+|..+
T Consensus       267 ~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~~a~~e~~~  309 (332)
T d1v9da_         267 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK  309 (332)
T ss_dssp             HHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             35678999999999999999999854

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=1.1e-07  Score=80.52  Aligned_cols=97  Identities=13%  Similarity=0.259  Sum_probs=81.9

Q ss_pred             hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc------cccCchHHHHHHHHHHHHHhhcc----
Q 036431           17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS------SERGGFLKEMKAFLEDCEEELKL----   86 (163)
Q Consensus        17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~------~e~~~F~~~M~~Fl~~AEeEi~~----   86 (163)
                      +-+..+.+||..|.+||.++++.|.+.+..|..++.++++-++....      ...++|...|..|++.|+.++..    
T Consensus       273 p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~  352 (411)
T d1ux5a_         273 PSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDE  352 (411)
T ss_dssp             GGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHhhccHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999998875421      12478999999999999988754    


Q ss_pred             -------------------c---CCceeehhHHHHHHhHHHHHHHHHHH
Q 036431           87 -------------------E---HPLQLFVIVKEFLSMVDRVCADISRN  113 (163)
Q Consensus        87 -------------------~---~plriFvIVRDFL~mLD~vCkEv~~~  113 (163)
                                         .   .|-.+|.|+.+|+.+++++|+|..+.
T Consensus       353 ~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~  401 (411)
T d1ux5a_         353 VKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAA  401 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               1   24569999999999999999987553