Citrus Sinensis ID: 036451

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
cccccccHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHcccc
cEEEccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEcccccccccccEcccccccccccEEEEEEccccccEEEEEcccEEEEEEcccEEEEEEEEEEcccccEEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHccc
GFRVQHSSLVEKMKAETQdffnlpiekknkywqrpgdiegfgGTLEIFLTEVECLSLKMLDQMAKALrmdpnemkemnyyppclqpnqvislnshsdASALTIRLQINemngiqtkkdgkWVLILTNGIYCNIEHCATINSMKERLSfatfcnpkldgefgptpnlitpespslfkriNVVDHLKELFSIEL
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEmngiqtkkdgkWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITpespslfkrinVVDHLKELFSIEL
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
******************DFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKAL*********MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITP**PSLFKRINVVDHLKELF****
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GFRVQHSSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRINVVDHLKELFSIEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query192 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.953 0.511 0.369 9e-41
D4N500364 Thebaine 6-O-demethylase N/A no 0.937 0.494 0.368 9e-38
D4N502360 Codeine O-demethylase OS= N/A no 0.958 0.511 0.365 1e-36
D4N501364 Probable 2-oxoglutarate/F N/A no 0.947 0.5 0.353 2e-36
A2A1A0352 S-norcoclaurine synthase N/A no 0.953 0.519 0.3 2e-23
Q96323356 Leucoanthocyanidin dioxyg no no 0.958 0.516 0.270 1e-16
Q9M547334 Flavonol synthase/flavano N/A no 0.781 0.449 0.284 2e-16
Q9FFQ5308 Flavonol synthase 3 OS=Ar no no 0.859 0.535 0.275 1e-15
P51091357 Leucoanthocyanidin dioxyg N/A no 0.916 0.492 0.264 1e-15
Q07512348 Flavonol synthase/flavano N/A no 0.562 0.310 0.349 2e-15
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 135/252 (53%), Gaps = 69/252 (27%)

Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFG------------------------ 42
           SS ++K+K+E QDFFNLP+E+K K+WQRP +IEGFG                        
Sbjct: 93  SSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPV 152

Query: 43  ----------------GTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE---------- 76
                            TLE++ +EV+ ++  ++ +MA+AL + P E+++          
Sbjct: 153 ELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQS 212

Query: 77  --MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWV------------ 122
             MNYYPPC QP+QVI L  HSD+  LT+ +Q+N++ G+Q KKDGKWV            
Sbjct: 213 MRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVN 272

Query: 123 -----LILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKR 177
                 I+TNG Y +IEH   +NS KERLS ATF N  +  E GP  +L+  +  + FKR
Sbjct: 273 IGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKR 332

Query: 178 INVVDHLKELFS 189
           + + ++   LFS
Sbjct: 333 LTMKEYNDGLFS 344

Arabidopsis thaliana (taxid: 3702)
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q9FFQ5|FLS3_ARATH Flavonol synthase 3 OS=Arabidopsis thaliana GN=FLS3 PE=2 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
297734657 316 unnamed protein product [Vitis vinifera] 0.968 0.588 0.446 1e-53
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.968 0.510 0.446 1e-53
147776748 395 hypothetical protein VITISV_032872 [Viti 0.968 0.470 0.442 3e-52
225453295 348 PREDICTED: protein SRG1 [Vitis vinifera] 0.968 0.534 0.442 4e-52
297734658 367 unnamed protein product [Vitis vinifera] 0.968 0.506 0.442 4e-52
225462507 366 PREDICTED: protein SRG1 [Vitis vinifera] 0.968 0.508 0.446 3e-51
255575133 317 Naringenin,2-oxoglutarate 3-dioxygenase, 0.968 0.586 0.497 8e-51
449434270 358 PREDICTED: protein SRG1-like [Cucumis sa 0.958 0.513 0.438 2e-49
359483589 361 PREDICTED: LOW QUALITY PROTEIN: protein 0.968 0.515 0.431 1e-48
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.968 0.510 0.425 1e-47
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/253 (44%), Positives = 151/253 (59%), Gaps = 67/253 (26%)

Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFG------------------------ 42
           SSLVEK+KAETQ+FFNLP+E+K K+WQ+PG++EGFG                        
Sbjct: 44  SSLVEKVKAETQEFFNLPLEEKKKFWQKPGEVEGFGQAFVVSEEQKLDWGDIFFMSTLPT 103

Query: 43  ----------------GTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE---------- 76
                            TLE+++ E+  L+L ML  M KAL+++ NEM++          
Sbjct: 104 HFRKPHLFPKLPLPFRDTLEVYVVEMRNLALTMLSFMEKALKIEVNEMRKLFEQGLQAMR 163

Query: 77  MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLI------------ 124
           MNYYPPC +P QVI L  HSD+  LTI LQ+NE+ G+Q +KDG W+ I            
Sbjct: 164 MNYYPPCPKPEQVIGLTPHSDSVGLTILLQVNEVEGLQIRKDGMWIPITPLPNAFIVNIG 223

Query: 125 -----LTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRIN 179
                 +NGIY +IEH A +NS+KERLS ATF NP++D E GP P+LITPE P+LF+R+ 
Sbjct: 224 DILEIFSNGIYKSIEHRAVVNSVKERLSIATFYNPQMDAEIGPVPSLITPEFPALFRRVG 283

Query: 180 VVDHLKELFSIEL 192
           V D++K+LFS EL
Sbjct: 284 VADYVKKLFSREL 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453295|ref|XP_002269432.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734658|emb|CBI16709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575133|ref|XP_002528471.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] gi|223532080|gb|EEF33888.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.635 0.337 0.381 2.3e-31
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.484 0.259 0.420 1.3e-29
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.625 0.339 0.361 4.9e-17
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.5 0.275 0.336 9e-22
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.640 0.345 0.347 2.7e-14
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.552 0.303 0.322 7.1e-20
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.630 0.332 0.335 2.7e-18
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.489 0.270 0.299 5.5e-17
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.354 0.192 0.420 1e-16
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.671 0.362 0.366 1.5e-16
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 215 (80.7 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 53/139 (38%), Positives = 79/139 (56%)

Query:    11 EKMKAETQDFFNL---PIEKKNKYWQRPGDIEGFGGTLEIFLTEVECLSLKMLDQMAKAL 67
             E  K +  D F L   P++ + ++      +  F  TL+++ T V+ ++  +L +MAKAL
Sbjct:   136 EDQKLDWADLFFLIMQPVQLRKRHLFPKLPLP-FRDTLDMYSTRVKSIAKILLAKMAKAL 194

Query:    68 RMDPNEMKE-----------MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTK 116
             ++ P E++E           MNYYPPC QPN V  L  HSDA  LTI LQ+NE++G+Q K
Sbjct:   195 QIKPEEVEEIFGDDMMQSMRMNYYPPCPQPNLVTGLIPHSDAVGLTILLQVNEVDGLQIK 254

Query:   117 KDGKWVLI--LTNGIYCNI 133
             K+GKW  +  L N    N+
Sbjct:   255 KNGKWFFVKPLQNAFIVNV 273
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-59
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-34
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-29
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-26
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-26
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 8e-24
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-21
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 7e-20
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-19
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-18
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-16
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-15
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 6e-15
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-14
PLN02947374 PLN02947, PLN02947, oxidoreductase 7e-14
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-13
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-13
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 6e-13
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-12
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-07
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-06
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 5e-06
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 6e-06
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-04
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  189 bits (482), Expect = 1e-59
 Identities = 101/254 (39%), Positives = 132/254 (51%), Gaps = 68/254 (26%)

Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFG------------------------ 42
           SS ++K+K+E QDFFNLP+E+K K WQRPG+IEGFG                        
Sbjct: 93  SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPV 152

Query: 43  ----------------GTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE---------- 76
                            TLE +  EV+ ++  +  +MA AL + P EM++          
Sbjct: 153 RLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSI 212

Query: 77  -MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL------------ 123
            MNYYPPC QP+QVI L  HSDA  LTI LQ+NE+ G+Q KKDGKWV             
Sbjct: 213 RMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNV 272

Query: 124 -----ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPESPSLFKRI 178
                I+TNG Y +IEH   +NS KERLS ATF N  +  E GP  +L+  +  +LFK +
Sbjct: 273 GDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSL 332

Query: 179 NVVDHLKELFSIEL 192
              ++   LFS EL
Sbjct: 333 TTKEYFDGLFSREL 346

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 192
PLN02216357 protein SRG1 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN02997325 flavonol synthase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.78
PLN03176120 flavanone-3-hydroxylase; Provisional 98.25
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 98.2
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 90.83
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 82.34
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=6e-54  Score=368.73  Aligned_cols=189  Identities=54%  Similarity=0.911  Sum_probs=174.2

Q ss_pred             ccCc---HHHHHHHHHHHhHhcCCCHHHHcccccCCCCCCCcH-------------------------------------
Q 036451            3 RVQH---SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFG-------------------------------------   42 (192)
Q Consensus         3 ~~nh---~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~-------------------------------------   42 (192)
                      |+||   .++++++++++++||+||.|+|+++...++..+||+                                     
T Consensus        86 v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~  165 (357)
T PLN02216         86 LVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPL  165 (357)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchH
Confidence            6899   899999999999999999999999865443445552                                     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHCCCChhhhhh-----------ccccCCCCCCCcccccCCCCCCCCceEEeecC
Q 036451           43 ---GTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE-----------MNYYPPCLQPNQVISLNSHSDASALTIRLQIN  108 (192)
Q Consensus        43 ---~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------l~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~  108 (192)
                         .++++|+++|.+|+.+||++||++|||++++|.+           +||||||++++..+|+++|||+|+||||+|++
T Consensus       166 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~  245 (357)
T PLN02216        166 PFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVN  245 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecC
Confidence               2899999999999999999999999999988765           89999999988899999999999999999966


Q ss_pred             CcceeEEeeCCeEEE-----------------eecCCeeecccCCCCCCCCCCeeeeEeecCCCCCceeecCCCCCCCCC
Q 036451          109 EMNGIQTKKDGKWVL-----------------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLITPES  171 (192)
Q Consensus       109 ~~~GLqV~~~g~W~~-----------------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~~  171 (192)
                      +++||||+++|+|++                 +||||+|||+.|||+.++.++|||||||++|+.|++|+|+++++++++
T Consensus       246 ~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~  325 (357)
T PLN02216        246 EVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQK  325 (357)
T ss_pred             CCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCC
Confidence            799999999999999                 999999999999999888889999999999999999999999999999


Q ss_pred             CCCcccccHHHHHHHHHhcc
Q 036451          172 PSLFKRINVVDHLKELFSIE  191 (192)
Q Consensus       172 ~~~y~~~~~~e~~~~~~~~~  191 (192)
                      |++|++++++||+..++++.
T Consensus       326 p~~Y~~~t~~ey~~~~~~~~  345 (357)
T PLN02216        326 AALFKSLTTKEYFDGLFSRE  345 (357)
T ss_pred             CCCCCCcCHHHHHHHHHhcc
Confidence            99999999999999988754

>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-17
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-17
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-17
1w9y_A319 The Structure Of Acc Oxidase Length = 319 8e-13
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 75/259 (28%)
Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYW--QRPGDIEGFGGTL------------------- 45
           + L+E++K   ++FF+L +E+K KY   Q  G I+G+G  L                   
Sbjct: 89  ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY 148
Query: 46  ------------------EIFLTEVECLSL---KMLDQMAKALRMDPNEMKE-------- 76
                             E      +CL L   K+   ++  L ++P+ +++        
Sbjct: 149 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 208
Query: 77  -----MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL-------- 123
                +NYYP C QP   + + +H+D SALT  L  N + G+Q   +GKWV         
Sbjct: 209 LLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSI 267
Query: 124 ---------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDG-EFGPTPNLITPESPS 173
                    IL+NG Y +I H   +N  K R+S+A FC P  D     P P +++ ESP+
Sbjct: 268 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 327
Query: 174 LFKRINVVDHLK-ELFSIE 191
            F       H++ +LF  E
Sbjct: 328 KFPPRTFAQHIEHKLFGKE 346
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-58
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-53
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-29
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-20
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-20
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vlb_A 907 Aldehyde oxidoreductase; iron-sulphur cluster; HET 9e-05
1dgj_A 907 Aldehyde oxidoreductase; beta half-barrel, four-he 1e-04
3hrd_A425 Nicotinate dehydrogenase large molybdopterin subun 1e-04
2w3s_B 777 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 2e-04
3nvz_C 755 Xanthine dehydrogenase/oxidase; hydroxylase, homod 3e-04
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  184 bits (469), Expect = 3e-58
 Identities = 46/252 (18%), Positives = 98/252 (38%), Gaps = 66/252 (26%)

Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGG----------------------- 43
             +++ ++  T+  +   +E++ K       +EG                          
Sbjct: 43  REVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISE 102

Query: 44  ----------TLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE-------------MNYY 80
                      +  F   +E L+ ++LD + + L ++   +K              ++ Y
Sbjct: 103 VPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNY 162

Query: 81  PPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL----------------- 123
           PPC +P+ +  L +H+DA  + +  Q ++++G+Q  KDG+W+                  
Sbjct: 163 PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLE 222

Query: 124 ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLI---TPESPSLFKRINV 180
           ++TNG Y ++ H         R+S A+F NP  D    P P L+     E+  ++ +   
Sbjct: 223 VITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVF 282

Query: 181 VDHLKELFSIEL 192
            D++K    ++ 
Sbjct: 283 DDYMKLYAGLKF 294
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A* Length = 907 Back     alignment and structure
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Length = 907 Back     alignment and structure
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Length = 425 Back     alignment and structure
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* Length = 777 Back     alignment and structure
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C* Length = 755 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=9.4e-53  Score=360.34  Aligned_cols=189  Identities=33%  Similarity=0.644  Sum_probs=173.2

Q ss_pred             cccCc---HHHHHHHHHHHhHhcCCCHHHHcccccCCC--CCCCcH----------------------------------
Q 036451            2 FRVQH---SSLVEKMKAETQDFFNLPIEKKNKYWQRPG--DIEGFG----------------------------------   42 (192)
Q Consensus         2 ~~~nh---~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~--~~~Gy~----------------------------------   42 (192)
                      +|+||   .++++++++.+++||+||.|+|+++...+.  ..+||+                                  
T Consensus        81 ~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~  160 (356)
T 1gp6_A           81 HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  160 (356)
T ss_dssp             EEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCC
Confidence            35899   999999999999999999999999876432  344442                                  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHCCCChhhhhh-------------ccccCCCCCCCcccccCCCCCCCCceE
Q 036451           43 ------GTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE-------------MNYYPPCLQPNQVISLNSHSDASALTI  103 (192)
Q Consensus        43 ------~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------l~~Yp~~~~~~~~~g~~~HtD~g~lTl  103 (192)
                            .++++|+++|.+|+.+|+++||++||+++++|.+             +||||||++++..+|+++|||+|+|||
T Consensus       161 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTl  240 (356)
T 1gp6_A          161 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  240 (356)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEE
Confidence                  2999999999999999999999999999887743             899999999888899999999999999


Q ss_pred             EeecCCcceeEEeeCCeEEE-----------------eecCCeeecccCCCCCCCCCCeeeeEeecCCCCCc-eeecCCC
Q 036451          104 RLQINEMNGIQTKKDGKWVL-----------------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDG-EFGPTPN  165 (192)
Q Consensus       104 L~q~~~~~GLqV~~~g~W~~-----------------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~-~i~pl~~  165 (192)
                      |+| |+++||||+++|+|++                 +||||+||||.|||++++.++|+|+|||++|+.|+ +|+|+++
T Consensus       241 L~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~  319 (356)
T 1gp6_A          241 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  319 (356)
T ss_dssp             EEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             EEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChh
Confidence            999 6799999999999999                 99999999999999998889999999999999999 9999999


Q ss_pred             CCCCCCCCCcccccHHHHHHHHHhcc
Q 036451          166 LITPESPSLFKRINVVDHLKELFSIE  191 (192)
Q Consensus       166 ~~~~~~~~~y~~~~~~e~~~~~~~~~  191 (192)
                      ++++++|++|+++|++||+..+++.+
T Consensus       320 ~~~~~~p~~y~~~t~~eyl~~~~~~~  345 (356)
T 1gp6_A          320 MVSVESPAKFPPRTFAQHIEHKLFGK  345 (356)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHHH
T ss_pred             hcCCCCCccCCCccHHHHHHHHHHhc
Confidence            99999999999999999999988753
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 192
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-19
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-18
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-09
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-07
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score = 81.1 bits (199), Expect = 3e-19
 Identities = 46/252 (18%), Positives = 98/252 (38%), Gaps = 66/252 (26%)

Query: 7   SSLVEKMKAETQDFFNLPIEKKNKYWQRPGDIEGFGG----------------------- 43
             +++ ++  T+  +   +E++ K       +EG                          
Sbjct: 42  REVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISE 101

Query: 44  ----------TLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE-------------MNYY 80
                      +  F   +E L+ ++LD + + L ++   +K              ++ Y
Sbjct: 102 VPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNY 161

Query: 81  PPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLI---------------- 124
           PPC +P+ +  L +H+DA  + +  Q ++++G+Q  KDG+W+ +                
Sbjct: 162 PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLE 221

Query: 125 -LTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEFGPTPNLI---TPESPSLFKRINV 180
            +TNG Y ++ H         R+S A+F NP  D    P P L+     E+  ++ +   
Sbjct: 222 VITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVF 281

Query: 181 VDHLKELFSIEL 192
            D++K    ++ 
Sbjct: 282 DDYMKLYAGLKF 293
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.1e-52  Score=351.35  Aligned_cols=188  Identities=33%  Similarity=0.634  Sum_probs=171.2

Q ss_pred             ccCc---HHHHHHHHHHHhHhcCCCHHHHcccccCC--CCCCCc------------------------------------
Q 036451            3 RVQH---SSLVEKMKAETQDFFNLPIEKKNKYWQRP--GDIEGF------------------------------------   41 (192)
Q Consensus         3 ~~nh---~~~~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy------------------------------------   41 (192)
                      |+||   .++++++++++++||+||.|+|+++....  +...||                                    
T Consensus        81 l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~  160 (349)
T d1gp6a_          81 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  160 (349)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccc
Confidence            5899   99999999999999999999999997643  222222                                    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHCCCChhhhhh-------------ccccCCCCCCCcccccCCCCCCCCceEE
Q 036451           42 ----GGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKE-------------MNYYPPCLQPNQVISLNSHSDASALTIR  104 (192)
Q Consensus        42 ----~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------l~~Yp~~~~~~~~~g~~~HtD~g~lTlL  104 (192)
                          ...+++|+++|.+++.+|+++++++||+++++|.+             ++|||+++.+...+|+++|||+|+||||
T Consensus       161 ~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL  240 (349)
T d1gp6a_         161 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  240 (349)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEE
Confidence                12899999999999999999999999999988764             8899999988888999999999999999


Q ss_pred             eecCCcceeEEeeCCeEEE-----------------eecCCeeecccCCCCCCCCCCeeeeEeecCCCCCcee-ecCCCC
Q 036451          105 LQINEMNGIQTKKDGKWVL-----------------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDGEF-GPTPNL  166 (192)
Q Consensus       105 ~q~~~~~GLqV~~~g~W~~-----------------~~Tng~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i-~pl~~~  166 (192)
                      +| ++++||||+++|+|++                 +||||+||||.|||+.+++++||||+||++|+.|++| +|+++|
T Consensus       241 ~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~  319 (349)
T d1gp6a_         241 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  319 (349)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             ec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHH
Confidence            99 7899999999999999                 9999999999999999988999999999999999865 899999


Q ss_pred             CCCCCCCCcccccHHHHHHHHHhcc
Q 036451          167 ITPESPSLFKRINVVDHLKELFSIE  191 (192)
Q Consensus       167 ~~~~~~~~y~~~~~~e~~~~~~~~~  191 (192)
                      +++++|++|++||++||++.|+..+
T Consensus       320 v~~~~p~~y~~~t~~e~~~~rl~~~  344 (349)
T d1gp6a_         320 VSVESPAKFPPRTFAQHIEHKLFGK  344 (349)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCccHHHHHHHHHhcc
Confidence            9999999999999999999998653
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure